Psyllid ID: psy12591

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRARAVSEI
Secondary Structure (PSIPRED)
cccccccccccccccccccEEcccccHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHHHHHHHHHHHccEEEEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEEEEccccHHHHHHHHHccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccccHEEccccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHccccccHHHccccc
Coil and Loop (DISEMBL)
vsfwstspelsnkqRFEYftrtipsdhHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKlvkdsgvaeetAYDDIVLKLLTKPRARGLFKRLKLVkdsgvaeetaYDDIVLKLLTKPRARAVSEI
Flexible Loop (DISEMBL)
vsfwstspelsnkqrFEYFTrtipsdhhqVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEklvkdsgvaeeTAYDDIVLKLltkprarglfkrlklvkdsgvaeetayddivlklltkpraravsei
Low Complexity Region (SEG)
VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRARAVSEI
Disordered region (IsUnstruct)
***************FEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLT**********
Disordered Region (DISOPRED)
VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRARAVS**
Disordered Region (DISEMBL)
*********LSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRARAVSEI
Disordered Region (DISPRO)
*SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKP**R*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRARAVSEI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q9QYS2	879	Metabotropic glutamate re	yes	N/A	0.708	0.116	0.409	3e-18
P31422	879	Metabotropic glutamate re	yes	N/A	0.708	0.116	0.409	4e-18
Q14832	879	Metabotropic glutamate re	yes	N/A	0.708	0.116	0.409	4e-18
Q5RAL3	879	Metabotropic glutamate re	yes	N/A	0.708	0.116	0.409	4e-18
Q1ZZH1	879	Metabotropic glutamate re	N/A	N/A	0.708	0.116	0.409	4e-18
P31421	872	Metabotropic glutamate re	no	N/A	0.708	0.116	0.4	1e-17
Q14BI2	872	Metabotropic glutamate re	no	N/A	0.708	0.116	0.4	1e-17
Q14416	872	Metabotropic glutamate re	no	N/A	0.708	0.116	0.4	1e-17
P91685	976	Metabotropic glutamate re	no	N/A	0.743	0.109	0.428	1e-17
P31424	1203	Metabotropic glutamate re	no	N/A	0.708	0.084	0.405	2e-17

>sp|Q9QYS2|GRM3_MOUSE Metabotropic glutamate receptor 3 OS=Mus musculus GN=Grm3 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 169 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRYFNWTYVSTVASEGDYGETGIE 228

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
             E      +ICIA  EK+ + +      +YD ++ +LL KP AR
Sbjct: 229 AFEQEARLRNICIATAEKVGRSN---IRKSYDSVIRELLQKPNAR 270

Receptor for glutamate. The activity of this receptor is mediated by a G-protein that inhibits adenylate cyclase activity.
Mus musculus (taxid: 10090)

>sp|P31422|GRM3_RAT Metabotropic glutamate receptor 3 OS=Rattus norvegicus GN=Grm3 PE=1 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 169 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 228

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
             E      +ICIA  EK+ + +      +YD ++ +LL KP AR
Sbjct: 229 AFEQEARLRNICIATAEKVGRSN---IRKSYDSVIRELLQKPNAR 270

Receptor for glutamate. The activity of this receptor is mediated by a G-protein that inhibits adenylate cyclase activity.

Rattus norvegicus (taxid: 10116)

>sp|Q14832|GRM3_HUMAN Metabotropic glutamate receptor 3 OS=Homo sapiens GN=GRM3 PE=1 SV=2

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 169 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 228

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
             E      +ICIA  EK+ + +      +YD ++ +LL KP AR
Sbjct: 229 AFEQEARLRNICIATAEKVGRSN---IRKSYDSVIRELLQKPNAR 270

Receptor for glutamate. The activity of this receptor is mediated by a G-protein that inhibits adenylate cyclase activity.

Homo sapiens (taxid: 9606)

>sp|Q5RAL3|GRM3_PONAB Metabotropic glutamate receptor 3 OS=Pongo abelii GN=GRM3 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 169 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 228

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
             E      +ICIA  EK+ + +      +YD ++ +LL KP AR
Sbjct: 229 AFEQEARLRNICIATAEKVGRSN---IRKSYDSVIRELLQKPNAR 270

Receptor for glutamate. The activity of this receptor is mediated by a G-protein that inhibits adenylate cyclase activity.

Pongo abelii (taxid: 9601)

>sp|Q1ZZH1|GRM3_MACFA Metabotropic glutamate receptor 3 OS=Macaca fascicularis GN=GRM3 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 169 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 228

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
             E      +ICIA  EK+ + +      +YD ++ +LL KP AR
Sbjct: 229 AFEQEARLRNICIATAEKVGRSN---IRKSYDSVIRELLQKPNAR 270

Receptor for glutamate. The activity of this receptor is mediated by a G-protein that inhibits adenylate cyclase activity.

Macaca fascicularis (taxid: 9541)

>sp|P31421|GRM2_RAT Metabotropic glutamate receptor 2 OS=Rattus norvegicus GN=Grm2 PE=1 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 3/105 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D  Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 163 ISYASTSAKLSDKSRYDYFARTVPPDFFQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 222

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
             E+     +IC+A  EK+ +        A++ +V  LL KP AR
Sbjct: 223 AFELEARARNICVATSEKVGR---AMSRAAFEGVVRALLQKPSAR 264

Receptor for glutamate. The activity of this receptor is mediated by a G-protein that inhibits adenylate cyclase activity. May mediate suppression of neurotransmission or may be involved in synaptogenesis or synaptic stabilization.

Rattus norvegicus (taxid: 10116)

>sp|Q14BI2|GRM2_MOUSE Metabotropic glutamate receptor 2 OS=Mus musculus GN=Grm2 PE=2 SV=2

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 3/105 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D  Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 163 ISYASTSAKLSDKSRYDYFARTVPPDFFQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 222

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
             E+     +IC+A  EK+ +        A++ +V  LL KP AR
Sbjct: 223 AFELEARARNICVATSEKVGR---AMSRAAFEGVVRALLQKPSAR 264

Receptor for glutamate. The activity of this receptor is mediated by a G-protein that inhibits adenylate cyclase activity. May mediate suppression of neurotransmission or may be involved in synaptogenesis or synaptic stabilization.

Mus musculus (taxid: 10090)

>sp|Q14416|GRM2_HUMAN Metabotropic glutamate receptor 2 OS=Homo sapiens GN=GRM2 PE=2 SV=2

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 62/105 (59%), Gaps = 3/105 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D  Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 163 ISYASTSAKLSDKSRYDYFARTVPPDFFQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 222

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
             E+     +IC+A  EK+ +        A++ +V  LL KP AR
Sbjct: 223 AFELEARARNICVATSEKVGR---AMSRAAFEGVVRALLQKPSAR 264

Receptor for glutamate. The activity of this receptor is mediated by a G-protein that inhibits adenylate cyclase activity. May mediate suppression of neurotransmission or may be involved in synaptogenesis or synaptic stabilization.

Homo sapiens (taxid: 9606)

>sp|P91685|GRM_DROME Metabotropic glutamate receptor OS=Drosophila melanogaster GN=mGluRA PE=1 SV=2

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 48/112 (42%), Positives = 66/112 (58%), Gaps = 5/112 (4%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           VS  ST+  LS+K RF+ F RT+P D  Q  A+V+I+K   WSYVS I+ E +YG    E
Sbjct: 176 VSPASTAKTLSDKTRFDLFARTVPPDTFQSVALVDILKNFNWSYVSTIHSEGSYGEYGIE 235

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG--LFKR 110
            L     + ++CIA+ EK+      A++  +D I+ KL  KP ARG  LF R
Sbjct: 236 ALHKEATERNVCIAVAEKV---PSAADDKVFDSIISKLQKKPNARGVVLFTR 284

Receptor for glutamate, glutamate activates the metabotropic receptors coupled to G-proteins.

Drosophila melanogaster (taxid: 7227)

>sp|P31424|GRM5_RAT Metabotropic glutamate receptor 5 OS=Rattus norvegicus GN=Grm5 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 68/106 (64%), Gaps = 4/106 (3%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +++ +TS +LS+K  F+YF R +PSD  Q +AMV+IVK+  W+YVS ++ E NYG    E
Sbjct: 169 IAYSATSMDLSDKTLFKYFMRVVPSDAQQARAMVDIVKRYNWTYVSAVHTEGNYGESGME 228

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTK-PRAR 105
             + + AK  ICIA   K+  ++G   E ++D ++ KL +  P+AR
Sbjct: 229 AFKDMSAKEGICIAHSYKIYSNAG---EQSFDKLLKKLRSHLPKAR 271

Receptor for glutamate. The activity of this receptor is mediated by a G-protein that activates a phosphatidylinositol-calcium second messenger system and generates a calcium-activated chloride current.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
383855430	2033	PREDICTED: uncharacterized protein LOC10	0.736	0.052	0.886	5e-49
442622906	1472	mangetout, isoform G [Drosophila melanog	0.736	0.072	0.858	1e-48
221330059	1248	mangetout, isoform F [Drosophila melanog	0.736	0.084	0.858	1e-48
221330057	1095	mangetout, isoform E [Drosophila melanog	0.736	0.096	0.858	1e-48
221330055	1415	mangetout, isoform D [Drosophila melanog	0.736	0.074	0.858	1e-48
195332500	1292	GM20683 [Drosophila sechellia] gi|194124	0.736	0.082	0.858	1e-48
194863463	1259	GG10638 [Drosophila erecta] gi|190662320	0.736	0.084	0.858	1e-48
42538965	1073	metabotropic X receptor [Drosophila mela	0.736	0.098	0.858	1e-48
195474735	1306	GE22975 [Drosophila yakuba] gi|194175746	0.736	0.081	0.858	2e-48
194753055	1293	GF12584 [Drosophila ananassae] gi|190620	0.736	0.081	0.858	2e-48

>gi|383855430|ref|XP_003703215.1| PREDICTED: uncharacterized protein LOC100881789 [Megachile rotundata]

 Score =  198 bits (504), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 94/106 (88%), Positives = 102/106 (96%)

Query: 1    VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
            VSF+STSPELSNKQRFEYFTRTIPSDH+QVKAM++IV K+GWSYVSIIYEESNYG+KAFE
Sbjct: 1225 VSFFSTSPELSNKQRFEYFTRTIPSDHYQVKAMIDIVLKMGWSYVSIIYEESNYGIKAFE 1284

Query: 61   ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106
            ELE LL K+ ICIAIKEKLVKDSGVAEETAYD+IVLKLLTKPRARG
Sbjct: 1285 ELEELLGKHDICIAIKEKLVKDSGVAEETAYDNIVLKLLTKPRARG 1330

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442622906|ref|NP_001260806.1| mangetout, isoform G [Drosophila melanogaster] gi|440214203|gb|AGB93339.1| mangetout, isoform G [Drosophila melanogaster]

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/106 (85%), Positives = 103/106 (97%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           VS++STSPELSNKQRFEYF+RTIPSDH+QVKAMVEIVK++GWSYVSIIYEESNYG+KAFE
Sbjct: 517 VSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVKRMGWSYVSIIYEESNYGIKAFE 576

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106
           ELE LLA+++ICIAIKEKLVKDSGVAE+ AYD+IV KLLTKPRARG
Sbjct: 577 ELEELLARHNICIAIKEKLVKDSGVAEDIAYDNIVQKLLTKPRARG 622

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330059|ref|NP_724683.2| mangetout, isoform F [Drosophila melanogaster] gi|220902130|gb|AAF59082.3| mangetout, isoform F [Drosophila melanogaster]

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/106 (85%), Positives = 103/106 (97%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           VS++STSPELSNKQRFEYF+RTIPSDH+QVKAMVEIVK++GWSYVSIIYEESNYG+KAFE
Sbjct: 350 VSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVKRMGWSYVSIIYEESNYGIKAFE 409

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106
           ELE LLA+++ICIAIKEKLVKDSGVAE+ AYD+IV KLLTKPRARG
Sbjct: 410 ELEELLARHNICIAIKEKLVKDSGVAEDIAYDNIVQKLLTKPRARG 455

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330057|ref|NP_610386.2| mangetout, isoform E [Drosophila melanogaster] gi|220902129|gb|AAF59081.3| mangetout, isoform E [Drosophila melanogaster]

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/106 (85%), Positives = 103/106 (97%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           VS++STSPELSNKQRFEYF+RTIPSDH+QVKAMVEIVK++GWSYVSIIYEESNYG+KAFE
Sbjct: 197 VSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVKRMGWSYVSIIYEESNYGIKAFE 256

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106
           ELE LLA+++ICIAIKEKLVKDSGVAE+ AYD+IV KLLTKPRARG
Sbjct: 257 ELEELLARHNICIAIKEKLVKDSGVAEDIAYDNIVQKLLTKPRARG 302

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330055|ref|NP_001137619.1| mangetout, isoform D [Drosophila melanogaster] gi|220902128|gb|ACL83073.1| mangetout, isoform D [Drosophila melanogaster]

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/106 (85%), Positives = 103/106 (97%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           VS++STSPELSNKQRFEYF+RTIPSDH+QVKAMVEIVK++GWSYVSIIYEESNYG+KAFE
Sbjct: 517 VSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVKRMGWSYVSIIYEESNYGIKAFE 576

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106
           ELE LLA+++ICIAIKEKLVKDSGVAE+ AYD+IV KLLTKPRARG
Sbjct: 577 ELEELLARHNICIAIKEKLVKDSGVAEDIAYDNIVQKLLTKPRARG 622

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195332500|ref|XP_002032935.1| GM20683 [Drosophila sechellia] gi|194124905|gb|EDW46948.1| GM20683 [Drosophila sechellia]

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/106 (85%), Positives = 103/106 (97%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           VS++STSPELSNKQRFEYF+RTIPSDH+QVKAMVEIVK++GWSYVSIIYEESNYG+KAFE
Sbjct: 350 VSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVKRMGWSYVSIIYEESNYGIKAFE 409

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106
           ELE LLA+++ICIAIKEKLVKDSGVAE+ AYD+IV KLLTKPRARG
Sbjct: 410 ELEELLARHNICIAIKEKLVKDSGVAEDIAYDNIVQKLLTKPRARG 455

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194863463|ref|XP_001970453.1| GG10638 [Drosophila erecta] gi|190662320|gb|EDV59512.1| GG10638 [Drosophila erecta]

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/106 (85%), Positives = 103/106 (97%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           VS++STSPELSNKQRFEYF+RTIPSDH+QVKAMVEIVK++GWSYVSIIYEESNYG+KAFE
Sbjct: 352 VSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVKRMGWSYVSIIYEESNYGIKAFE 411

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106
           ELE LLA+++ICIAIKEKLVKDSGVAE+ AYD+IV KLLTKPRARG
Sbjct: 412 ELEELLARHNICIAIKEKLVKDSGVAEDIAYDNIVQKLLTKPRARG 457

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|42538965|emb|CAE46392.1| metabotropic X receptor [Drosophila melanogaster]

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 91/106 (85%), Positives = 103/106 (97%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           VS++STSPELSNKQRFEYF+RTIPSDH+QVKAMVEIVK++GWSYVSIIYEESNYG+KAFE
Sbjct: 174 VSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVKRMGWSYVSIIYEESNYGIKAFE 233

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106
           ELE LLA+++ICIAIKEKLVKDSGVAE+ AYD+IV KLLTKPRARG
Sbjct: 234 ELEELLARHNICIAIKEKLVKDSGVAEDIAYDNIVQKLLTKPRARG 279

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195474735|ref|XP_002089645.1| GE22975 [Drosophila yakuba] gi|194175746|gb|EDW89357.1| GE22975 [Drosophila yakuba]

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 91/106 (85%), Positives = 103/106 (97%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           VS++STSPELSNKQRFEYF+RTIPSDH+QVKAMVEIVK++GWSYVSIIYEESNYG+KAFE
Sbjct: 365 VSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVKRMGWSYVSIIYEESNYGIKAFE 424

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106
           ELE LLA+++ICIAIKEKLVKDSGVAE+ AYD+IV KLLTKPRARG
Sbjct: 425 ELEELLARHNICIAIKEKLVKDSGVAEDIAYDNIVQKLLTKPRARG 470

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194753055|ref|XP_001958834.1| GF12584 [Drosophila ananassae] gi|190620132|gb|EDV35656.1| GF12584 [Drosophila ananassae]

 Score =  196 bits (498), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 91/106 (85%), Positives = 103/106 (97%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           VS++STSPELSNKQRFEYF+RTIPSDH+QVKAMVEIVK++GWSYVSIIYEESNYG+KAFE
Sbjct: 359 VSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVKRMGWSYVSIIYEESNYGIKAFE 418

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106
           ELE LLA+++ICIAIKEKLVKDSGVAE+ AYD+IV KLLTKPRARG
Sbjct: 419 ELEELLARHNICIAIKEKLVKDSGVAEDIAYDNIVQKLLTKPRARG 464

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
FB|FBgn0050361	1415	mtt "mangetout" [Drosophila me	0.736	0.074	0.858	1e-43
UNIPROTKB|Q2PNZ6	535	GRM3 "Metabotropic glutamate r	0.708	0.190	0.419	2.8e-18
UNIPROTKB|G5E9K2	537	GRM3 "Glutamate receptor, meta	0.708	0.189	0.419	2.9e-18
UNIPROTKB|F5GYZ2	751	GRM3 "Metabotropic glutamate r	0.708	0.135	0.419	7.8e-18
UNIPROTKB|C9J2I2	171	GRM3 "Metabotropic glutamate r	0.708	0.596	0.419	9.5e-18
UNIPROTKB|E1BUE5	879	GRM3 "Uncharacterized protein"	0.708	0.116	0.419	1e-17
MGI|MGI:1351340	879	Grm3 "glutamate receptor, meta	0.708	0.116	0.419	1.3e-17
UNIPROTKB|Q14832	879	GRM3 "Metabotropic glutamate r	0.708	0.116	0.419	1.3e-17
UNIPROTKB|A5D7D8	879	GRM3 "GRM3 protein" [Bos tauru	0.708	0.116	0.419	1.6e-17
RGD|2744	879	Grm3 "glutamate receptor, meta	0.708	0.116	0.419	1.6e-17

FB|FBgn0050361 mtt "mangetout" [Drosophila melanogaster (taxid:7227)]

 Score = 474 (171.9 bits), Expect = 1.0e-43, P = 1.0e-43
 Identities = 91/106 (85%), Positives = 103/106 (97%)

Query:     1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
             VS++STSPELSNKQRFEYF+RTIPSDH+QVKAMVEIVK++GWSYVSIIYEESNYG+KAFE
Sbjct:   517 VSYFSTSPELSNKQRFEYFSRTIPSDHYQVKAMVEIVKRMGWSYVSIIYEESNYGIKAFE 576

Query:    61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG 106
             ELE LLA+++ICIAIKEKLVKDSGVAE+ AYD+IV KLLTKPRARG
Sbjct:   577 ELEELLARHNICIAIKEKLVKDSGVAEDIAYDNIVQKLLTKPRARG 622

GO:0016021 "integral to membrane" evidence=ISS

GO:0016595 "glutamate binding" evidence=ISS;IDA

GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IDA

GO:0004930 "G-protein coupled receptor activity" evidence=IDA

GO:0008066 "glutamate receptor activity" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0017085 "response to insecticide" evidence=IMP;IDA

GO:0008343 "adult feeding behavior" evidence=IMP

UNIPROTKB|Q2PNZ6 GRM3 "Metabotropic glutamate receptor 3" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 44/105 (41%), Positives = 66/105 (62%)

Query:     1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
             +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct:   167 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 226

Query:    61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
               E      +ICIA  EK+ + S + +  +YD ++ +LL KP AR
Sbjct:   227 AFEQEARLRNICIATAEKVGR-SNIRK--SYDSVIRELLQKPNAR 268

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G5E9K2 GRM3 "Glutamate receptor, metabotropic 3, isoform CRA_a" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
 Identities = 44/105 (41%), Positives = 66/105 (62%)

Query:     1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
             +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct:   169 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 228

Query:    61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
               E      +ICIA  EK+ + S + +  +YD ++ +LL KP AR
Sbjct:   229 AFEQEARLRNICIATAEKVGR-SNIRK--SYDSVIRELLQKPNAR 270

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F5GYZ2 GRM3 "Metabotropic glutamate receptor 3" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 7.8e-18, Sum P(2) = 7.8e-18
 Identities = 44/105 (41%), Positives = 66/105 (62%)

Query:     1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
             +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct:    41 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 100

Query:    61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
               E      +ICIA  EK+ + S + +  +YD ++ +LL KP AR
Sbjct:   101 AFEQEARLRNICIATAEKVGR-SNIRK--SYDSVIRELLQKPNAR 142

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|C9J2I2 GRM3 "Metabotropic glutamate receptor 3" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
 Identities = 44/105 (41%), Positives = 66/105 (62%)

Query:     1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
             +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct:    41 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 100

Query:    61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
               E      +ICIA  EK+ + S + +  +YD ++ +LL KP AR
Sbjct:   101 AFEQEARLRNICIATAEKVGR-SNIRK--SYDSVIRELLQKPNAR 142

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BUE5 GRM3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 216 (81.1 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
 Identities = 44/105 (41%), Positives = 66/105 (62%)

Query:     1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
             +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct:   169 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 228

Query:    61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
               E      +ICIA  EK+ + S + +  +YD ++ +LL KP AR
Sbjct:   229 AFEQEARLRNICIATSEKVGR-SNIRK--SYDGVIRELLQKPNAR 270

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0001641 "group II metabotropic glutamate receptor activity" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

MGI|MGI:1351340 Grm3 "glutamate receptor, metabotropic 3" [Mus musculus (taxid:10090)]

 Score = 217 (81.4 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
 Identities = 44/105 (41%), Positives = 66/105 (62%)

Query:     1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
             +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct:   169 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRYFNWTYVSTVASEGDYGETGIE 228

Query:    61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
               E      +ICIA  EK+ + S + +  +YD ++ +LL KP AR
Sbjct:   229 AFEQEARLRNICIATAEKVGR-SNIRK--SYDSVIRELLQKPNAR 270

GO:0001641 "group II metabotropic glutamate receptor activity" evidence=ISO;IDA

GO:0004871 "signal transducer activity" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007165 "signal transduction" evidence=IEA

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0007196 "adenylate cyclase-inhibiting G-protein coupled glutamate receptor signaling pathway" evidence=IDA

GO:0014069 "postsynaptic density" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=TAS

GO:0030424 "axon" evidence=IDA

GO:0035249 "synaptic transmission, glutamatergic" evidence=TAS

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0048786 "presynaptic active zone" evidence=NAS

GO:0050804 "regulation of synaptic transmission" evidence=ISO

GO:0051930 "regulation of sensory perception of pain" evidence=NAS

GO:0097449 "astrocyte projection" evidence=ISO

UNIPROTKB|Q14832 GRM3 "Metabotropic glutamate receptor 3" [Homo sapiens (taxid:9606)]

 Score = 216 (81.1 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
 Identities = 44/105 (41%), Positives = 66/105 (62%)

Query:     1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
             +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct:   169 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 228

Query:    61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
               E      +ICIA  EK+ + S + +  +YD ++ +LL KP AR
Sbjct:   229 AFEQEARLRNICIATAEKVGR-SNIRK--SYDSVIRELLQKPNAR 270

GO:0001641 "group II metabotropic glutamate receptor activity" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0050804 "regulation of synaptic transmission" evidence=IEA

GO:0004930 "G-protein coupled receptor activity" evidence=TAS

GO:0008066 "glutamate receptor activity" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007194 "negative regulation of adenylate cyclase activity" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

UNIPROTKB|A5D7D8 GRM3 "GRM3 protein" [Bos taurus (taxid:9913)]

 Score = 216 (81.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 44/105 (41%), Positives = 66/105 (62%)

Query:     1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
             +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct:   169 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 228

Query:    61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
               E      +ICIA  EK+ + S + +  +YD ++ +LL KP AR
Sbjct:   229 AFEQEARLRNICIATAEKVGR-SNIRK--SYDSVIRELLQKPNAR 270

GO:0005886 "plasma membrane" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0005246 "calcium channel regulator activity" evidence=IEA

GO:0001641 "group II metabotropic glutamate receptor activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|2744 Grm3 "glutamate receptor, metabotropic 3" [Rattus norvegicus (taxid:10116)]

 Score = 216 (81.1 bits), Expect = 1.6e-17, Sum P(2) = 1.6e-17
 Identities = 44/105 (41%), Positives = 66/105 (62%)

Query:     1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
             +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct:   169 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 228

Query:    61 ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
               E      +ICIA  EK+ + S + +  +YD ++ +LL KP AR
Sbjct:   229 AFEQEARLRNICIATAEKVGR-SNIRK--SYDSVIRELLQKPNAR 270

GO:0001641 "group II metabotropic glutamate receptor activity" evidence=IEA;ISO;IMP

GO:0005246 "calcium channel regulator activity" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0007196 "adenylate cyclase-inhibiting G-protein coupled glutamate receptor signaling pathway" evidence=ISO

GO:0014069 "postsynaptic density" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0019233 "sensory perception of pain" evidence=TAS

GO:0030424 "axon" evidence=IEA;ISO

GO:0042734 "presynaptic membrane" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0043197 "dendritic spine" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=IEA;ISO

GO:0050804 "regulation of synaptic transmission" evidence=IDA

GO:0097449 "astrocyte projection" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	144
cd06362	452	cd06362, PBP1_mGluR, Ligand binding domain of the	1e-46
cd06350	348	cd06350, PBP1_GPCR_family_C_like, Ligand-binding d	7e-29
cd06375	458	cd06375, PBP1_mGluR_groupII, Ligand binding domain	9e-28
cd06374	472	cd06374, PBP1_mGluR_groupI, Ligand binding domain	1e-26
cd06269	298	cd06269, PBP1_glutamate_receptors_like, Family C G	6e-23
cd06376	463	cd06376, PBP1_mGluR_groupIII, Ligand-binding domai	4e-22
pfam01094	343	pfam01094, ANF_receptor, Receptor family ligand bi	7e-22
cd06363	410	cd06363, PBP1_Taste_receptor, Ligand-binding domai	5e-19
cd06366	350	cd06366, PBP1_GABAb_receptor, Ligand-binding domai	9e-19
cd06361	403	cd06361, PBP1_GPC6A_like, Ligand-binding domain of	2e-18
cd04509	299	cd04509, PBP1_ABC_transporter_GCPR_C_like, Family	5e-14
cd06364	510	cd06364, PBP1_CaSR, Ligand-binding domain of the C	6e-13
cd06346	312	cd06346, PBP1_ABC_ligand_binding_like_11, Type I p	2e-10
cd06352	389	cd06352, PBP1_NPR_GC_like, Ligand-binding domain o	1e-08
cd01391	269	cd01391, Periplasmic_Binding_Protein_Type_1, Type	1e-08
cd06365	469	cd06365, PBP1_Pheromone_receptor, Ligand-binding d	1e-06
cd06268	298	cd06268, PBP1_ABC_transporter_LIVBP_like, Periplas	2e-06
cd06370	404	cd06370, PBP1_Speract_GC_like, Ligand-binding doma	2e-05
cd06351	328	cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leuci	6e-05
cd06340	347	cd06340, PBP1_ABC_ligand_binding_like_6, Type I pe	1e-04
cd06344	332	cd06344, PBP1_ABC_ligand_binding_like_9, Type I pe	1e-04
COG0683	366	COG0683, LivK, ABC-type branched-chain amino acid	9e-04

>gnl|CDD|107357 cd06362, PBP1_mGluR, Ligand binding domain of the metabotropic glutamate receptors (mGluR)

 Score =  156 bits (397), Expect = 1e-46
 Identities = 55/110 (50%), Positives = 72/110 (65%), Gaps = 5/110 (4%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STSPELS+K R++YF+RT+P D  Q +AMV+IVK   W+YVS +  E NYG K  E
Sbjct: 131 ISYASTSPELSDKTRYDYFSRTVPPDSFQAQAMVDIVKAFNWTYVSTVASEGNYGEKGIE 190

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG--LF 108
             E L A+  ICIA  EK+      A E  +D+I+ KLL+KP AR   LF
Sbjct: 191 AFEKLAAERGICIAGSEKIPSS---ATEEEFDNIIRKLLSKPNARVVVLF 237

Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III. Length = 452

>gnl|CDD|153138 cd06350, PBP1_GPCR_family_C_like, Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)

 Score =  107 bits (269), Expect = 7e-29
 Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 14/123 (11%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ +TSP LS+K +F  F RT+PSD  Q  A+V ++K  GW++V ++Y + +YG     
Sbjct: 119 ISYGATSPLLSDKLQFPSFFRTVPSDTSQALAIVALLKHFGWTWVGLVYSDDDYGRSGLS 178

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPR-----------ARGLFK 109
           +LE  L K  ICIA  E +   S    E     I+ KL +              A  LF 
Sbjct: 179 DLEEELEKNGICIAFVEAIPPSS---TEEDIKRILKKLKSSTARVIVVFGDEDDALRLFC 235

Query: 110 RLK 112
              
Sbjct: 236 EAY 238

Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extracellular region is further devided into the ligand-binding domain (LBD) and the cysteine-rich domain. The LBD has sequence similarity to the LIVBP, which is a bacterial periplasmic protein (PBP), as well as to the extracellular region of both iGluR and the gamma-aminobutyric acid (GABA)b receptor. iGluRs are divided into three main subtypes based on pharmacological profile: NMDA, AMPA, and kainate receptors. All family C GPCRs have a large extracellular N terminus that contain a domain with homology to bacterial periplasmic amino acid-binding proteins. Length = 348

>gnl|CDD|107370 cd06375, PBP1_mGluR_groupII, Ligand binding domain of the group II metabotropic glutamate receptor

 Score =  106 bits (265), Expect = 9e-28
 Identities = 48/112 (42%), Positives = 67/112 (59%), Gaps = 5/112 (4%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 133 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 192

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARG--LFKR 110
             E      +ICIA  EK+      A+  +YD ++ KLL KP AR   LF R
Sbjct: 193 AFEQEARLRNICIATSEKV---GRSADRKSYDSVIRKLLQKPNARVVVLFTR 241

Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. Length = 458

>gnl|CDD|107369 cd06374, PBP1_mGluR_groupI, Ligand binding domain of the group I metabotropic glutamate receptor

 Score =  103 bits (257), Expect = 1e-26
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 16/131 (12%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +++ +TS +LS+K  F+YF R +PSD  Q +AM++IVK+  W+YVS ++ E NYG    E
Sbjct: 145 IAYSATSIDLSDKTLFKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGME 204

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL---LTKPRA----------RGL 107
             + L A   +CIA  +K+  ++G   E ++D ++ KL   L K R           RGL
Sbjct: 205 AFKELAAHEGLCIAHSDKIYSNAG---EQSFDRLLRKLRSRLPKARVVVCFCEGMTVRGL 261

Query: 108 FKRLKLVKDSG 118
              ++ +   G
Sbjct: 262 LMAMRRLGVGG 272

Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. Length = 472

>gnl|CDD|153137 cd06269, PBP1_glutamate_receptors_like, Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors

 Score = 91.0 bits (226), Expect = 6e-23
 Identities = 34/83 (40%), Positives = 55/83 (66%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ +TSP LS+K++F  F RT+PSD  Q +A+V+++K  GW++V ++Y + +YG +  E
Sbjct: 99  ISYSATSPLLSDKEQFPSFLRTVPSDSSQAQAIVDLLKHFGWTWVGLVYSDDDYGRRLLE 158

Query: 61  ELEVLLAKYSICIAIKEKLVKDS 83
            LE  L K  IC+A  E +   S
Sbjct: 159 LLEEELEKNGICVAFVESIPDGS 181

This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing variants of the orphan receptors are not included in this CD. The family C GPCRs are activated by endogenous agonists such as amino acids, ions, and sugar based molecules. Their amino terminal ligand-binding region is homologous to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). The ionotropic glutamate receptors (iGluRs) have an integral ion channel and are subdivided into three major groups based on their pharmacology and structural similarities: NMDA receptors, AMPA receptors, and kainate receptors. The family of membrane bound guanylyl cyclases is further divided into three subfamilies: the ANP receptor (GC-A)/C-type natriuretic peptide receptor (GC-B), the heat-stable enterotoxin receptor (GC-C)/sensory organ specific membrane GCs such as retinal receptors (GC-E, GC-F), and olfactory receptors (GC-D and GC-G). Length = 298

>gnl|CDD|107371 cd06376, PBP1_mGluR_groupIII, Ligand-binding domain of the group III metabotropic glutamate receptor

 Score = 90.3 bits (224), Expect = 4e-22
 Identities = 42/108 (38%), Positives = 66/108 (61%), Gaps = 4/108 (3%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ ST+PELS+ +R+++F+R +P D  Q +AMV+IVK LGW+YVS +  E NYG    E
Sbjct: 131 ISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGNYGESGVE 190

Query: 61  E-LEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGL 107
              ++      +CIA   K+ ++    E   +D I+ +LL  P AR +
Sbjct: 191 AFTQISREAGGVCIAQSIKIPREPRPGE---FDKIIKRLLETPNARAV 235

Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes. Length = 463

>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region

 Score = 88.7 bits (220), Expect = 7e-22
 Identities = 36/106 (33%), Positives = 60/106 (56%), Gaps = 5/106 (4%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ +TSPELS+K R+  F RT+PSD  Q +A+ +I+K  GW  V++IY++ +YG    E
Sbjct: 78  ISYGATSPELSDKTRYPTFARTVPSDSKQARAIADILKHFGWKRVAVIYDDDDYGEGGLE 137

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL-LTKPRAR 105
            LE  L +      +    V    +A +  +  ++ +L   K +AR
Sbjct: 138 ALEDALRE----AGLNVVAVASEVIASDDDFTALLKELKDIKSKAR 179

This family includes extracellular ligand binding domains of a wide range of receptors. This family also includes the bacterial amino acid binding proteins of known structure. Length = 343

>gnl|CDD|107358 cd06363, PBP1_Taste_receptor, Ligand-binding domain of the T1R taste receptor

 Score = 81.2 bits (201), Expect = 5e-19
 Identities = 32/98 (32%), Positives = 59/98 (60%), Gaps = 2/98 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ ++S  LSNK+ +  F RT+PSD  Q++AMV+++++ GW++V+ +  +  YG    +
Sbjct: 135 ISYGASSEVLSNKELYPSFLRTVPSDKDQIEAMVQLLQEFGWNWVAFLGSDDEYGRDGLQ 194

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL 98
               L+A   ICIA +  +  D+    ET Y  I+ ++
Sbjct: 195 LFSELIANTGICIAYQGLIPLDT--DPETDYQQILKQI 230

Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors. Length = 410

>gnl|CDD|107361 cd06366, PBP1_GABAb_receptor, Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)

 Score = 80.4 bits (199), Expect = 9e-19
 Identities = 35/102 (34%), Positives = 53/102 (51%), Gaps = 3/102 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +SF +TSP LS++ ++ YF RT PSD  Q  A+  ++KK GW  V+ IYE+ +YG     
Sbjct: 94  LSFAATSPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKFGWRRVATIYEDDDYGSGGLP 153

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKP 102
           +L   L +  I I+ +         A +    D + KL  K 
Sbjct: 154 DLVDALQEAGIEISYRAAF---PPSANDDDITDALKKLKEKD 192

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example. Length = 350

>gnl|CDD|107356 cd06361, PBP1_GPC6A_like, Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor

 Score = 79.5 bits (196), Expect = 2e-18
 Identities = 36/79 (45%), Positives = 49/79 (62%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           VS+ ST+  LS+K RF  F RT+PSD +Q KAM  ++KK GW++V II  + +YG  A E
Sbjct: 131 VSYASTAEILSDKIRFPSFLRTVPSDFYQTKAMAHLIKKSGWNWVGIIITDDDYGRSALE 190

Query: 61  ELEVLLAKYSICIAIKEKL 79
              +      +CIA KE L
Sbjct: 191 TFIIQAEANGVCIAFKEIL 209

This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. Length = 403

>gnl|CDD|107261 cd04509, PBP1_ABC_transporter_GCPR_C_like, Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems

 Score = 66.7 bits (163), Expect = 5e-14
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 6/105 (5%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S  +T+P L++K+ + Y  RT PSD  Q +A+ + +K+  W  V+I+Y++ +YG    E
Sbjct: 95  ISPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNWKKVAILYDDDSYGRGLLE 154

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL-TKPRA 104
             +    K    +     + ++      T +  ++ KL   KP  
Sbjct: 155 AFKAAFKKKGGTV-----VGEEYYPLGTTDFTSLLQKLKAAKPDV 194

This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4- isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts through either mGluRs or iGluRs. mGluRs subunits possess seven transmembrane segments and a large N-terminal extracellular domain. ABC-type leucine-isoleucine-valine-binding protein (LIVBP) is a bacterial periplasmic binding protein that has homology with the amino-terminal domain of the glutamate-receptor ion channels (iGluRs). The extracellular regions of iGluRs are made of two PBP-like domains in tandem, a LIVBP-like domain that constitutes the N terminus - which is included in this CD - followed by a domain related to lysine-arginine-ornithine-binding protein (LAOBP) that belongs to the type II periplasmic binding fold protein superfamily. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group. Length = 299

>gnl|CDD|107359 cd06364, PBP1_CaSR, Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily

 Score = 64.3 bits (156), Expect = 6e-13
 Identities = 32/87 (36%), Positives = 48/87 (55%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           VS+ S+S  LSNK +F+ F RTIP+D HQ  AM +I++   W++V  I  + +YG    E
Sbjct: 146 VSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIE 205

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAE 87
           +      +  ICI   E + + S   E
Sbjct: 206 KFREEAEERDICIDFSELISQYSDEEE 232

Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calcium metabolism. Additionally, the family C GPCRs includes at least two receptors with broad-spectrum amino acid-sensing properties: GPRC6A which recognizes basic and various aliphatic amino acids, its gold-fish homolog the 5.24 chemoreceptor, and a specific taste receptor (T1R) which responds to aliphatic, polar, charged, and branched amino acids, but not to aromatic amino acids. Length = 510

>gnl|CDD|107341 cd06346, PBP1_ABC_ligand_binding_like_11, Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 5   STSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGV-------K 57
           STSP L+       F RT PSD  Q +A+ ++  + G+  V+  Y  ++YGV       K
Sbjct: 100 STSPTLTTLDDNGLFFRTAPSDALQGQALAQLAAERGYKSVATTYINNDYGVGLADAFTK 159

Query: 58  AFEEL 62
           AFE L
Sbjct: 160 AFEAL 164

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally. Length = 312

>gnl|CDD|107347 cd06352, PBP1_NPR_GC_like, Ligand-binding domain of membrane guanylyl-cyclase receptors

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 22/106 (20%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIY-EESNYGVKAF 59
           +S+   +  LS+K  +   TRT+P      +A++ +++   W    ++Y ++S       
Sbjct: 96  ISWGCVALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNWHVAVVVYSDDSENCFFTL 155

Query: 60  EELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
           E LE  L ++++ ++    +  +SG  +     +I+     K R+R
Sbjct: 156 EALEAALREFNLTVSHVVFMEDNSGAED---LLEILQD--IKRRSR 196

Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The ligand binding domain of the NPRs exhibits strong structural similarity to the type I periplasmic binding fold protein family. Length = 389

>gnl|CDD|107248 cd01391, Periplasmic_Binding_Protein_Type_1, Type 1 periplasmic binding fold superfamily

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 8/109 (7%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYE-ESNYGVKAF 59
           VS  +T+P+L+    + Y  R  P +    +A  E + + GW  V++IY  +  YG +  
Sbjct: 86  VSLDATAPDLT---GYPYVFRVGPDNEQAGEAAAEYLAEKGWKRVALIYGDDGAYGRERL 142

Query: 60  EELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLF 108
           E  +  L K  I +      ++   +  E  +  ++  L   P+   +F
Sbjct: 143 EGFKAALKKAGIEVV----AIEYGDLDTEKGFQALLQLLKAAPKPDAIF 187

Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The core structures of periplasmic binding proteins are classified into two types, and they differ in number and order of beta strands: type 1 has six beta strands, while type 2 has five beta strands per sub-domain. These two structural folds are thought to be distantly related via a common ancestor. Notably, while the N-terminal LIVBP-like domain of iGluRs belongs to the type 1 periplasmic-binding fold protein superfamily, the glutamate-binding domain of the iGluR is structurally similar to the type 2 periplasmic-binding fold. Length = 269

>gnl|CDD|107360 cd06365, PBP1_Pheromone_receptor, Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 17/79 (21%), Positives = 38/79 (48%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +++    P LS++ +F    +  P D      MV ++    W++V ++  + + G +   
Sbjct: 131 LTYGPFDPLLSDRVQFPSLYQMAPKDTSLPLGMVSLMLHFSWTWVGLVISDDDRGEQFLS 190

Query: 61  ELEVLLAKYSICIAIKEKL 79
           +L   + +  IC+A  EK+
Sbjct: 191 DLREEMQRNGICLAFVEKI 209

Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors. Length = 469

>gnl|CDD|107263 cd06268, PBP1_ABC_transporter_LIVBP_like, Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 5/65 (7%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVE-IVKKLGWSYVSIIYEESNYGV--- 56
           +S  +TSP L+ K    Y  RT PSD  Q  A+ + + +K     V+IIY++  YG    
Sbjct: 94  ISPGATSPALTGKGN-PYVFRTAPSDAQQAAALADYLAEKGKVKKVAIIYDDYAYGRGLA 152

Query: 57  KAFEE 61
            AF E
Sbjct: 153 AAFRE 157

Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC-type Leucine-Isoleucine-Valine-Binding Proteins (LIVBP), which are homologous to the aliphatic amidase transcriptional repressor, AmiC, of Pseudomonas aeruginosa. The uncharacterized periplasmic components of various ABC-type transport systems are included in this group. Length = 298

>gnl|CDD|107365 cd06370, PBP1_Speract_GC_like, Ligand-binding domain of membrane bound guanylyl cyclases

 Score = 42.3 bits (100), Expect = 2e-05
 Identities = 19/73 (26%), Positives = 37/73 (50%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+      +S+K ++  F RT+P     VK+++ ++K   W+  S++YE  +     FE
Sbjct: 95  ISYKCDEEPVSDKSKYPTFARTVPPSIQVVKSVIALLKHFNWNKFSVVYENDSKYSSVFE 154

Query: 61  ELEVLLAKYSICI 73
            L+      +I I
Sbjct: 155 TLKEEAELRNITI 167

Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model. Length = 404

>gnl|CDD|107346 cd06351, PBP1_iGluR_N_LIVBP_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)

 Score = 41.0 bits (96), Expect = 6e-05
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S    S  LS+K+      +  PS      A++++++   W+  +IIY +S+ G+   +
Sbjct: 91  ISISGGSEGLSDKEESSTTLQLYPSLEDLADALLDLLEYYNWTKFAIIY-DSDEGLSRLQ 149

Query: 61  EL 62
           EL
Sbjct: 150 EL 151

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors. NMDA receptors have intrinsically slow kinetics, are highly permeable to Ca2+, and are blocked by extracellular Mg2+ in a voltage-dependent manner. On the other hand, non-NMDA receptors have faster kinetics, are weakly permeable to Ca2+, and are not blocked by extracellular Mg2+. While non-NMDA receptors typically mediate excitatory synaptic responses at resting membrane potentials, NMDA receptors contribute to several forms of synaptic plasticity and are suggested to play an important role in the development of synaptic pathways. Length = 328

>gnl|CDD|107335 cd06340, PBP1_ABC_ligand_binding_like_6, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 14/80 (17%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 5   STSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSY------VSIIYEESNYGVKA 58
           + S  ++ ++ F+Y  R  P D    + M + +K L          V++++E++ +G   
Sbjct: 102 AVSDSIT-ERGFKYTFRITPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHEDTEFGTSV 160

Query: 59  FEELEVLLAKYSICIAIKEK 78
            E ++    +    I     
Sbjct: 161 AEAIKKFAKERGFEIVEDIS 180

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Length = 347

>gnl|CDD|107339 cd06344, PBP1_ABC_ligand_binding_like_9, Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 5   STSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSY-VSIIY-EESNYGVKAFEEL 62
           STS +LSN     YF RT+PS+    +A+ + +KK      V+I Y   S Y     +E 
Sbjct: 98  STSVKLSNP--GPYFFRTVPSNAVAARALAKYLKKKNKIKKVAIFYNSTSPYSQSLKQEF 155

Query: 63  EVLLAKY 69
              L + 
Sbjct: 156 TSALLER 162

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally. Length = 332

>gnl|CDD|223755 COG0683, LivK, ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]

 Score = 37.8 bits (88), Expect = 9e-04
 Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVE-IVKKLGWSYVSIIYEESNYGVKAF 59
           +S  +T+P+L+ +       RT P+D+ Q  A  + +VKK G   V+II ++  YG    
Sbjct: 106 ISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGGKKRVAIIGDDYAYGEGLA 165

Query: 60  EELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL 99
           +  +  L      + ++E          +T +  +V K+ 
Sbjct: 166 DAFKAALKALGGEVVVEEVY-----APGDTDFSALVAKIK 200

Length = 366

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
cd06375	458	PBP1_mGluR_groupII Ligand binding domain of the gr	99.9
cd06365	469	PBP1_Pheromone_receptor Ligand-binding domain of t	99.9
cd06361	403	PBP1_GPC6A_like Ligand-binding domain of the promi	99.9
KOG1056|consensus	878		99.88
cd06364	510	PBP1_CaSR Ligand-binding domain of the CaSR calciu	99.87
cd06374	472	PBP1_mGluR_groupI Ligand binding domain of the gro	99.86
cd06379	377	PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/	99.84
cd06362	452	PBP1_mGluR Ligand binding domain of the metabotrop	99.84
cd06376	463	PBP1_mGluR_groupIII Ligand-binding domain of the g	99.83
cd06367	362	PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali	99.81
cd06350	348	PBP1_GPCR_family_C_like Ligand-binding domain of m	99.79
cd06371	382	PBP1_sensory_GC_DEF_like Ligand-binding domain of	99.77
cd06363	410	PBP1_Taste_receptor Ligand-binding domain of the T	99.77
cd06386	387	PBP1_NPR_C_like Ligand-binding domain of type C na	99.77
cd06366	350	PBP1_GABAb_receptor Ligand-binding domain of GABAb	99.75
cd06370	404	PBP1_Speract_GC_like Ligand-binding domain of memb	99.72
cd06269	298	PBP1_glutamate_receptors_like Family C G-protein c	99.72
cd06385	405	PBP1_NPR_A Ligand-binding domain of type A natriur	99.71
cd06378	362	PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/	99.69
PF01094	348	ANF_receptor: Receptor family ligand binding regio	99.68
cd06373	396	PBP1_NPR_like Ligand binding domain of natriuretic	99.66
cd06384	399	PBP1_NPR_B Ligand-binding domain of type B natriur	99.66
cd06346	312	PBP1_ABC_ligand_binding_like_11 Type I periplasmic	99.66
cd06352	389	PBP1_NPR_GC_like Ligand-binding domain of membrane	99.63
cd06372	391	PBP1_GC_G_like Ligand-binding domain of membrane g	99.59
cd06338	345	PBP1_ABC_ligand_binding_like_5 Type I periplasmic	99.55
cd06345	344	PBP1_ABC_ligand_binding_like_10 Type I periplasmic	99.52
cd06393	384	PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol	99.51
cd06342	334	PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind	99.47
cd06343	362	PBP1_ABC_ligand_binding_like_8 Type I periplasmic	99.46
cd06380	382	PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali	99.46
cd06340	347	PBP1_ABC_ligand_binding_like_6 Type I periplasmic	99.45
cd06336	347	PBP1_ABC_ligand_binding_like_3 Type I periplasmic	99.45
cd06382	327	PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v	99.44
cd06390	364	PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin	99.42
cd06329	342	PBP1_SBP_like_3 Periplasmic solute-binding domain	99.41
cd06335	347	PBP1_ABC_ligand_binding_like_2 Type I periplasmic	99.4
cd06334	351	PBP1_ABC_ligand_binding_like_1 Type I periplasmic	99.4
cd06368	324	PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu	99.4
PRK15404	369	leucine ABC transporter subunit substrate-binding	99.39
cd06383	368	PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine	99.39
cd04509	299	PBP1_ABC_transporter_GCPR_C_like Family C of G-pro	99.39
cd06349	340	PBP1_ABC_ligand_binding_like_14 Type I periplasmic	99.39
cd06351	328	PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc	99.39
cd06327	334	PBP1_SBP_like_1 Periplasmic solute-binding domain	99.38
cd06360	336	PBP1_alkylbenzenes_like Type I periplasmic binding	99.37
cd06344	332	PBP1_ABC_ligand_binding_like_9 Type I periplasmic	99.36
COG0683	366	LivK ABC-type branched-chain amino acid transport	99.33
cd06347	334	PBP1_ABC_ligand_binding_like_12 Type I periplasmic	99.32
cd06328	333	PBP1_SBP_like_2 Periplasmic solute-binding domain	99.31
cd06330	346	PBP1_Arsenic_SBP_like Periplasmic solute-binding d	99.31
KOG1055|consensus	865		99.3
cd06391	400	PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v	99.3
cd06348	344	PBP1_ABC_ligand_binding_like_13 Type I periplasmic	99.29
cd06389	370	PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin	99.22
cd06359	333	PBP1_Nba_like Type I periplasmic binding component	99.16
cd06332	333	PBP1_aromatic_compounds_like Type I periplasmic bi	99.14
cd06268	298	PBP1_ABC_transporter_LIVBP_like Periplasmic bindin	99.13
TIGR03863	347	PQQ_ABC_bind ABC transporter, substrate binding pr	99.13
cd06339	336	PBP1_YraM_LppC_lipoprotein_like Periplasmic bindin	99.13
cd06333	312	PBP1_ABC-type_HAAT_like Type I periplasmic binding	99.11
cd06355	348	PBP1_FmdD_like Periplasmic component (FmdD) of an	99.11
cd06331	333	PBP1_AmiC_like Type I periplasmic components of am	99.09
cd06326	336	PBP1_STKc_like Type I periplasmic binding domain o	99.07
cd06394	333	PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu	99.06
cd06358	333	PBP1_NHase Type I periplasmic-binding protein of t	99.04
TIGR03407	359	urea_ABC_UrtA urea ABC transporter, urea binding p	99.03
KOG4440|consensus	993		99.02
TIGR03669	374	urea_ABC_arch urea ABC transporter, substrate-bind	98.99
cd06337	357	PBP1_ABC_ligand_binding_like_4 Type I periplasmic	98.98
cd06388	371	PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin	98.98
cd06356	334	PBP1_Amide_Urea_BP_like Periplasmic component (Fmd	98.97
PF13458	343	Peripla_BP_6: Periplasmic binding protein; PDB: 4E	98.96
cd06387	372	PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin	98.89
cd06392	400	PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v	98.79
cd06341	341	PBP1_ABC_ligand_binding_like_7 Type I periplasmic	98.68
cd06357	360	PBP1_AmiC Periplasmic binding domain of amidase (A	98.64
cd06381	363	PBP1_iGluR_delta_like N-terminal leucine/isoleucin	98.59
cd06377	382	PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/	98.51
cd01391	269	Periplasmic_Binding_Protein_Type_1 Type 1 periplas	98.51
PF13433	363	Peripla_BP_5: Periplasmic binding protein domain;	98.06
KOG1053|consensus	1258		97.78
cd06369	380	PBP1_GC_C_enterotoxin_receptor Ligand-binding doma	97.42
KOG1054|consensus	897		97.04
TIGR02990	239	ectoine_eutA ectoine utilization protein EutA. Mem	96.55
PF04348	536	LppC: LppC putative lipoprotein; InterPro: IPR0074	95.14
cd01537	264	PBP1_Repressors_Sugar_Binding_like Ligand-binding	95.14
cd01536	267	PBP1_ABC_sugar_binding_like Periplasmic sugar-bind	94.86
PRK09860	383	putative alcohol dehydrogenase; Provisional	94.74
cd08192	370	Fe-ADH7 Iron-containing alcohol dehydrogenases-lik	94.43
COG1454	377	EutG Alcohol dehydrogenase, class IV [Energy produ	94.42
cd08190	414	HOT Hydroxyacid-oxoacid transhydrogenase (HOT) inv	94.11
cd08551	370	Fe-ADH iron-containing alcohol dehydrogenases (Fe-	94.1
PRK15454	395	ethanol dehydrogenase EutG; Provisional	93.99
PRK10624	382	L-1,2-propanediol oxidoreductase; Provisional	93.9
cd06325	281	PBP1_ABC_uncharacterized_transporter Type I peripl	93.66
cd08193	376	HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyze	93.65
PF00465	366	Fe-ADH: Iron-containing alcohol dehydrogenase ; In	93.46
cd08189	374	Fe-ADH5 Iron-containing alcohol dehydrogenases-lik	93.36
cd06267	264	PBP1_LacI_sugar_binding_like Ligand binding domain	93.31
cd08194	375	Fe-ADH6 Iron-containing alcohol dehydrogenases-lik	93.13
cd06282	266	PBP1_GntR_like_2 Ligand-binding domain of putative	92.88
cd08185	380	Fe-ADH1 Iron-containing alcohol dehydrogenases-lik	92.66
TIGR02638	379	lactal_redase lactaldehyde reductase. This clade o	92.64
cd08188	377	Fe-ADH4 Iron-containing alcohol dehydrogenases-lik	92.14
KOG3857|consensus	465		91.99
cd08176	377	LPO Lactadehyde:propanediol oxidoreductase (LPO) c	91.23
cd08191	386	HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyz	91.11
cd06300	272	PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi	90.96
cd08181	357	PPD-like 1,3-propanediol dehydrogenase-like (PPD).	90.91
cd08182	367	HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) c	90.83
cd08170	351	GlyDH Glycerol dehydrogenases (GlyDH) catalyzes ox	90.32
cd08187	382	BDH Butanol dehydrogenase catalyzes the conversion	90.1
cd08171	345	GlyDH-like2 Glycerol dehydrogenase-like. Glycerol	89.36
PF13685	250	Fe-ADH_2: Iron-containing alcohol dehydrogenase; P	89.08
cd07766	332	DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like)	88.77
cd08186	383	Fe-ADH8 Iron-containing alcohol dehydrogenase. Typ	88.68
cd06273	268	PBP1_GntR_like_1 This group includes the ligand-bi	88.44
PRK09423	366	gldA glycerol dehydrogenase; Provisional	87.41
cd08550	349	GlyDH-like Glycerol_dehydrogenase-like. Families o	87.01
cd08183	374	Fe-ADH2 Iron-containing alcohol dehydrogenases-lik	85.32
TIGR02667	163	moaB_proteo molybdenum cofactor biosynthesis prote	85.04
cd06320	275	PBP1_allose_binding Periplasmic allose-binding dom	84.8
cd03364	79	TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The top	84.5
cd08179	375	NADPH_BDH NADPH-dependent butanol dehydrogenase in	84.4
cd06323	268	PBP1_ribose_binding Periplasmic sugar-binding doma	84.28
cd08178	398	AAD_C C-terminal alcohol dehydrogenase domain of t	83.98
cd06278	266	PBP1_LacI_like_2 Ligand-binding domain of uncharac	82.51
COG2984	322	ABC-type uncharacterized transport system, peripla	82.48
cd06353	258	PBP1_BmpA_Med_like Periplasmic binding domain of t	82.31
cd08175	348	G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) c	82.01
TIGR01481	329	ccpA catabolite control protein A. Catabolite cont	81.77
cd06301	272	PBP1_rhizopine_binding_like Periplasmic binding pr	81.69
cd08180	332	PDD 1,3-propanediol dehydrogenase (PPD) catalyzes	81.41
cd00886	152	MogA_MoaB MogA_MoaB family. Members of this family	81.35
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	80.93
cd06310	273	PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi	80.7
PF13607	138	Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin	80.67
cd06284	267	PBP1_LacI_like_6 Ligand-binding domain of an uncha	80.44

>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor

Probab=99.90  E-value=2.1e-23  Score=168.71  Aligned_cols=138  Identities=34%  Similarity=0.551  Sum_probs=118.4

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      ||++++++.|+++.+|||||||.|+|..|+.++++++++|+|+||++|+++++||...++.|.+.+++.|+||+..+.++
T Consensus       133 Is~~sts~~Ls~~~~~~~ffRt~psd~~qa~ai~~ll~~~~W~~Vaii~~~~~yG~~~~~~~~~~~~~~gi~i~~~~~i~  212 (458)
T cd06375         133 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATSEKVG  212 (458)
T ss_pred             eeeccCChhhcccccCCCeEEecCCcHHHHHHHHHHHHHCCCeEEEEEEeCchHHHHHHHHHHHHHHHCCeeEEEEEEec
Confidence            68899999999988899999999999999999999999999999999999999999999999999999999999999897


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee-------------------EEeeeCCcchhh-h----hHHHHHHHhcCc
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL-------------------KLVKDSGVAEET-A----YDDIVLKLLTKP  136 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~-------------------~~~~~~g~~~~~-~----~~~~~~~~~~~~  136 (144)
                      ..+   .+.++..+|++|++.+++||||++.                   .|+..+||.... .    -+.++|.+++.|
T Consensus       213 ~~~---~~~d~~~~l~~l~~~~~a~vVvl~~~~~~~~~ll~~a~~~g~~~~wigs~~~~~~~~~~~~~~~~~~G~i~~~~  289 (458)
T cd06375         213 RSA---DRKSYDSVIRKLLQKPNARVVVLFTRSEDARELLAAAKRLNASFTWVASDGWGAQESIVKGSEDVAEGAITIEL  289 (458)
T ss_pred             CCC---CHHHHHHHHHHHhccCCCEEEEEecChHHHHHHHHHHHHcCCcEEEEEeccccccchhhhccchhhceEEEEEe
Confidence            654   3689999999998457899999874                   468888886542 2    236777777777


Q ss_pred             ccccc
Q psy12591        137 RARAV  141 (144)
Q Consensus       137 ~~~~~  141 (144)
                      +..-+
T Consensus       290 ~~~~i  294 (458)
T cd06375         290 ASHPI  294 (458)
T ss_pred             ccccc
Confidence            66443

Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes

>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=99.90  E-value=1.6e-23  Score=169.75  Aligned_cols=137  Identities=16%  Similarity=0.274  Sum_probs=116.3

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |||+++++.|+++.+|||||||.|+|..|+.++++++++|+|+||++|+++++||....+.|.+++++.|+||+..+.++
T Consensus       131 Is~~sts~~lsd~~~yp~ffRt~psd~~q~~ai~~li~~f~W~~Vaiv~~d~~yg~~~~~~~~~~~~~~gi~I~~~~~i~  210 (469)
T cd06365         131 LTYGPFDPLLSDRVQFPSLYQMAPKDTSLPLGMVSLMLHFSWTWVGLVISDDDRGEQFLSDLREEMQRNGICLAFVEKIP  210 (469)
T ss_pred             eeeccCCccccchhhCCcceEecCCchhHHHHHHHHHHhcCCeEEEEEEecChhHHHHHHHHHHHHHHCCeEEEEEEEec
Confidence            68899999999988899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee--------------------EEeeeCCcchhh-----hhHHHHHHHhcC
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL--------------------KLVKDSGVAEET-----AYDDIVLKLLTK  135 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~--------------------~~~~~~g~~~~~-----~~~~~~~~~~~~  135 (144)
                      .... ..+.++..+|++|+ .+++|+||+++                    .|+.++||....     ..+.++|.+++.
T Consensus       211 ~~~~-~~~~~~~~~l~~i~-~~~arvIvl~~~~~~~~~l~~~~~~~~~~~~~wi~s~~w~~~~~~~~~~~~~~~G~lg~~  288 (469)
T cd06365         211 VNMQ-LYLTRAEKYYNQIM-TSSAKVIIIYGDTDSLLEVSFRLWQYLLIGKVWITTSQWDVTTSPKDFTLNSFHGTLIFS  288 (469)
T ss_pred             CCch-hhHHHHHHHHHHhh-cCCCeEEEEEcCcHHHHHHHHHHHHhccCceEEEeeccccccccccccccceeeEEEEEE
Confidence            7642 11348899999998 79999999985                    367777775432     234667777776


Q ss_pred             cccc
Q psy12591        136 PRAR  139 (144)
Q Consensus       136 ~~~~  139 (144)
                      |+..
T Consensus       289 ~~~~  292 (469)
T cd06365         289 HHHS  292 (469)
T ss_pred             eccC
Confidence            6654

Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.

>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor

Probab=99.90  E-value=3.8e-23  Score=164.85  Aligned_cols=137  Identities=27%  Similarity=0.352  Sum_probs=111.9

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |||+++++.|+++.+|||||||.|+|..|+.++++++++|+|+||++|+++++||++..+.|.+.++++|+||+..+.++
T Consensus       131 IS~~ats~~Ls~~~~~~~ffRt~p~D~~qa~ai~~li~~~~w~~Vaii~~~d~yG~~~~~~f~~~~~~~GicIa~~e~~~  210 (403)
T cd06361         131 VSYASTAEILSDKIRFPSFLRTVPSDFYQTKAMAHLIKKSGWNWVGIIITDDDYGRSALETFIIQAEANGVCIAFKEILP  210 (403)
T ss_pred             EecCcCCcccCCcccCCCeeECCCchHhHHHHHHHHHHHcCCcEEEEEEecCchHHHHHHHHHHHHHHCCeEEEEEEEec
Confidence            58999999999988899999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCc--chhhHHHHHHHHhcCCCceEEEEee-------------------EEeeeCCcchh-hhh-----HHHHHHHh
Q psy12591         81 KDSGVA--EETAYDDIVLKLLTKPRARGLFKRL-------------------KLVKDSGVAEE-TAY-----DDIVLKLL  133 (144)
Q Consensus        81 ~~~~~~--~~~~~~~~l~~lk~~~~arvii~~~-------------------~~~~~~g~~~~-~~~-----~~~~~~~~  133 (144)
                      .+.+..  ...+++.+++.+| .+++|+||+++                   .|+..+||... .++     ..+.|.++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~ik-~~~a~vVvv~~~~~~~~~l~~~a~~~g~~~~wigs~~w~~~~~~~~~~~~~~~~g~ig  289 (403)
T cd06361         211 ASLSDNTKLNRIIRTTEKIIE-ENKVNVIVVFARQFHVFLLFNKAIERNINKVWIASDNWSTAKKILTDPNVKKIGKVVG  289 (403)
T ss_pred             CccCcchhHHHHHHHHHHHHh-cCCCeEEEEEeChHHHHHHHHHHHHhCCCeEEEEECcccCccccccCCcccccceEEE
Confidence            753200  0145666666677 78999999875                   37888888763 222     34455555


Q ss_pred             cCccc
Q psy12591        134 TKPRA  138 (144)
Q Consensus       134 ~~~~~  138 (144)
                      +.|+.
T Consensus       290 ~~~~~  294 (403)
T cd06361         290 FTFKS  294 (403)
T ss_pred             EEecC
Confidence            55543

This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.

>KOG1056|consensus

Probab=99.88  E-value=2.5e-22  Score=169.22  Aligned_cols=138  Identities=37%  Similarity=0.568  Sum_probs=117.9

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |||+++++.|+|+.+|+||.|++|+|.+|++|+++++++|+|+||+.+++.++||+.+.++|++..+++|+||+.+++++
T Consensus       153 isyaSts~~LSdk~ry~~F~RtVP~D~~Qa~Am~~il~~f~W~yVstv~s~~dYGE~Gieaf~~~a~~~~iCIa~s~ki~  232 (878)
T KOG1056|consen  153 ISYASTSPDLSDKTRYDYFLRTVPSDVFQAQAMVDILKKFNWNYVSTVASEGDYGESGIEAFKEEAAERGICIAFSEKIY  232 (878)
T ss_pred             eccccCCcccccchhhhceeeecCChHHHHHHHHHHHHHhCeeEeeehhcCccchhhhHHHHHHhHHhcCceEEehhhcc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee---------------------EEeeeCCcchh-----hhhHHHHHHHhc
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL---------------------KLVKDSGVAEE-----TAYDDIVLKLLT  134 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~---------------------~~~~~~g~~~~-----~~~~~~~~~~~~  134 (144)
                      ..+   .+..|+.++++|...+++|++|+|.                     .|+.++||.+.     ..-...+|.+..
T Consensus       233 ~~~---~~~~~~~~l~kl~~~~~a~vvV~F~~~~~~r~~~~aa~~~n~~g~~~wiaSd~W~~~~~~~~~~e~~a~g~i~i  309 (878)
T KOG1056|consen  233 QLS---IEQEFDCVLRKLLETPNARVVVVFCRGEDARRLLKAARRANLTGEFLWIASDGWASQNSPTEAPEREAEGAITI  309 (878)
T ss_pred             ccc---chhHHHHHHHHHhhcCCCeEEEEecCcchHHHHHHHHHHhCCCcceEEEecchhhccCChhhhhhhhhceeEEE
Confidence            764   4889999999999669999999985                     35667777662     112245555555


Q ss_pred             Ccccccc
Q psy12591        135 KPRARAV  141 (144)
Q Consensus       135 ~~~~~~~  141 (144)
                      ++..+.|
T Consensus       310 ~l~~~~v  316 (878)
T KOG1056|consen  310 KLASPQV  316 (878)
T ss_pred             EecCCcc
Confidence            5555444

>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=99.87  E-value=1.6e-21  Score=159.67  Aligned_cols=108  Identities=31%  Similarity=0.506  Sum_probs=99.4

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      ||++++++.|+++..||+||||.|+|..|+.++++++++|+|+||++|+.+++||+...+.|.+.+++.|+||+..+.++
T Consensus       146 IS~~sss~~ls~~~~yp~ffRt~psd~~q~~Ai~~l~~~f~wk~VaiI~~dd~yG~~~~~~~~~~~~~~Gi~I~~~~~i~  225 (510)
T cd06364         146 VSYASSSRLLSNKNQFKSFLRTIPNDEHQATAMADIIEYFRWNWVGTIAADDDYGRPGIEKFREEAEERDICIDFSELIS  225 (510)
T ss_pred             cccccCCcccCCccccCCeeEcCCChHHHHHHHHHHHHHcCCeEEEEEEecCcchHHHHHHHHHHHHHCCcEEEEEEEeC
Confidence            58889999999988899999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      ...   .+.++..+|++|+ .+++|+||++..
T Consensus       226 ~~~---~~~d~~~~l~klk-~~~a~vVvl~~~  253 (510)
T cd06364         226 QYS---DEEEIQRVVEVIQ-NSTAKVIVVFSS  253 (510)
T ss_pred             CCC---CHHHHHHHHHHHH-hcCCeEEEEEeC
Confidence            643   2679999999999 689999998764

Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci

>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor

Probab=99.86  E-value=7.8e-21  Score=154.07  Aligned_cols=108  Identities=37%  Similarity=0.654  Sum_probs=97.8

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      ||++++++.++++..||||||+.|++..++.++++++++|+|++|++|+++++||+...+.|.+.+++.|+||+..+.++
T Consensus       145 Is~~ats~~ls~~~~~p~~fRt~p~d~~~~~al~~l~~~~~W~~Vaii~~~~~yg~~~~~~~~~~~~~~gi~i~~~~~i~  224 (472)
T cd06374         145 IAYSATSIDLSDKTLFKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMEAFKELAAHEGLCIAHSDKIY  224 (472)
T ss_pred             cccccCchhhcccccCCceEEcCCChHHHHHHHHHHHHHCCCcEEEEEEecchHHHHHHHHHHHHHHHCCeeEEEEEEec
Confidence            67889999999988899999999999999999999999999999999999999999999999999999999999998886


Q ss_pred             CCCCCcchhhHHHHHHHHhc-CCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLT-KPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~-~~~arvii~~~  111 (144)
                      ...   .+.+++.+|++||+ .+++|||+++.
T Consensus       225 ~~~---~~~d~~~~l~~lk~~~~da~vvv~~~  253 (472)
T cd06374         225 SNA---GEQSFDRLLRKLRSRLPKARVVVCFC  253 (472)
T ss_pred             CCC---chHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            543   26899999999995 36788888763

Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor

Probab=99.84  E-value=3.3e-20  Score=146.21  Aligned_cols=127  Identities=17%  Similarity=0.242  Sum_probs=108.1

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCce----EEEEE
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSI----CIAIK   76 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi----~V~~~   76 (144)
                      |+++++++.++++..||||||+.|++..|+.++++++++|+|++|++++++++||.+..+.|++.+++.|+    ||+..
T Consensus       113 Is~~a~~~~ls~~~~~~~~~R~~psd~~~~~a~~~~l~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~~~~~v~~~  192 (377)
T cd06379         113 VGISTRDSIFSDKNIHLSFLRTVPPYSHQADVWLEMLRSFKWNKVILLVSDDHEGRAAQKRFETLLEEREIEFKIKVEKV  192 (377)
T ss_pred             EecccCCccccCccccccEEEecCCHHHHHHHHHHHHHHcCCeEEEEEEEcCcchhHHHHHHHHHHHhcCCccceeeeEE
Confidence            46788888898877799999999999999999999999999999999999999999999999999999999    88888


Q ss_pred             ecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCccc
Q psy12591         77 EKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRA  138 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  138 (144)
                      +.++.+     +.|++.+|++|| ..++|+||+++.     .-+...++.++.....+++.|
T Consensus       193 ~~~~~~-----~~d~~~~l~~ik-~~~~~vIvl~~~-----~~~~~~l~~qa~~~g~~~~~~  243 (377)
T cd06379         193 VEFEPG-----EKNVTSLLQEAK-ELTSRVILLSAS-----EDDAAVIYRNAGMLNMTGEGY  243 (377)
T ss_pred             EecCCc-----hhhHHHHHHHHh-hcCCeEEEEEcC-----HHHHHHHHHHHHHcCCCCCCE
Confidence            888654     578999999999 689999998875     333445566666666665544

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore

>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR)

Probab=99.84  E-value=4.6e-20  Score=148.45  Aligned_cols=108  Identities=48%  Similarity=0.786  Sum_probs=98.3

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++++..||||||+.|++..++.++++++++|+|++|++|+++++||....+.|.+.+++.|+||+..+.++
T Consensus       131 Is~~sts~~ls~~~~~~~~fR~~p~d~~~~~a~~~~l~~~~w~~vaii~~~~~~G~~~~~~~~~~~~~~gi~i~~~~~~~  210 (452)
T cd06362         131 ISYASTSPELSDKTRYDYFSRTVPPDSFQAQAMVDIVKAFNWTYVSTVASEGNYGEKGIEAFEKLAAERGICIAGSEKIP  210 (452)
T ss_pred             cccccCchhhccccccCCEEEecCChHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHHHHHHCCeeEEEEEEcC
Confidence            57889999999887899999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      ...   .+.+++.+|++|++.+++|+||++.
T Consensus       211 ~~~---~~~d~~~~l~~l~~~~~a~viil~~  238 (452)
T cd06362         211 SSA---TEEEFDNIIRKLLSKPNARVVVLFC  238 (452)
T ss_pred             CCC---CHHHHHHHHHHHhhcCCCeEEEEEc
Confidence            653   2689999999998446799998875

Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.

>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor

Probab=99.83  E-value=8.6e-20  Score=147.61  Aligned_cols=108  Identities=38%  Similarity=0.724  Sum_probs=95.8

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhC-ceEEEEEecc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKY-SICIAIKEKL   79 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~-Gi~V~~~~~~   79 (144)
                      ||++++++.|+++..||||||+.|++..|+.++++++++|+|++|++|+++++||....+.|.+.+++. |+||+..+.+
T Consensus       131 Is~~ats~~ls~~~~~~~ffR~~p~d~~~~~ai~~~i~~~~w~~Vaii~~~~~yg~~~~~~~~~~~~~~g~~~v~~~~~i  210 (463)
T cd06376         131 ISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGNYGESGVEAFTQISREAGGVCIAQSIKI  210 (463)
T ss_pred             cccccCChhhcccccCCceEEccCCHHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHHHHHHHcCCceEEEEEec
Confidence            578899999998778999999999999999999999999999999999999999999999999999986 5899877766


Q ss_pred             cCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +..+   .+.||+.+|++||+.+++|+||+++
T Consensus       211 ~~~~---~~~d~~~~l~~ik~~~~~~vIvl~~  239 (463)
T cd06376         211 PREP---RPGEFDKIIKRLLETPNARAVIIFA  239 (463)
T ss_pred             CCCC---CHHHHHHHHHHHhccCCCeEEEEec
Confidence            5554   3689999999998447899999865

Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors

Probab=99.81  E-value=2.1e-19  Score=140.73  Aligned_cols=128  Identities=18%  Similarity=0.196  Sum_probs=104.9

Q ss_pred             CcccCCCCCC-cCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceE--EEEEe
Q psy12591          1 VSFWSTSPEL-SNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSIC--IAIKE   77 (144)
Q Consensus         1 Is~~at~~~l-s~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~--V~~~~   77 (144)
                      ||++++++.+ +++..||||||+.|++..|+.++++++++|+|++|++|+++++||++..+.+++.+++.|+|  ++...
T Consensus        94 Is~~~~~~~~~s~~~~~~~~~R~~p~~~~~~~ai~~ll~~~~w~~vaii~~~~~~g~~~~~~l~~~l~~~g~~~~i~~~~  173 (362)
T cd06367          94 VGISGRESIFMSDKNIHSLFLQTGPSLEQQADVMLEILEEYDWHQFSVVTSRDPGYRDFLDRVETTLEESFVGWEFQLVL  173 (362)
T ss_pred             EEeeccccccccCCCcccceEeecCcHHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhcccceeeeeeE
Confidence            5788888888 88888999999999999999999999999999999999999999999999999999999999  77666


Q ss_pred             cccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCccc
Q psy12591         78 KLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRA  138 (144)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  138 (144)
                      .++...    ..+++.++.+|+ +.++|+||+++..     .+...++.++.....++|.|
T Consensus       174 ~~~~~~----~~~~~~~l~~l~-~~~~~vivl~~~~-----~~~~~il~~a~~~g~~~~~~  224 (362)
T cd06367         174 TLDLSD----DDGDARLLRQLK-KLESRVILLYCSK-----EEAERIFEAAASLGLTGPGY  224 (362)
T ss_pred             EeccCC----CcchHHHHHHHH-hcCCcEEEEeCCH-----HHHHHHHHHHHHcCCCCCCc
Confidence            666542    237889999999 6889999988752     23344555555555555433

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits

>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)

Probab=99.79  E-value=2.2e-18  Score=133.74  Aligned_cols=108  Identities=37%  Similarity=0.603  Sum_probs=98.6

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++++..||+|||+.|++..++.++++++++++|+++++++.+++||....+.|.+.+++.|+||+..+.++
T Consensus       119 is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~~~  198 (348)
T cd06350         119 ISYGATSPLLSDKLQFPSFFRTVPSDTSQALAIVALLKHFGWTWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEAIP  198 (348)
T ss_pred             ecccCCChhhccccccCCeeEecCCcHHHHHHHHHHHHHCCCeEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEEcc
Confidence            57888889998887899999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      .+.   +..++..++++|| .+++|+||++..
T Consensus       199 ~~~---~~~d~~~~l~~l~-~~~~~vvv~~~~  226 (348)
T cd06350         199 PSS---TEEDIKRILKKLK-SSTARVIVVFGD  226 (348)
T ss_pred             CCC---cHHHHHHHHHHHH-hCCCcEEEEEeC
Confidence            753   2579999999999 688899998864

Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr

>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues

Probab=99.77  E-value=5.4e-18  Score=134.23  Aligned_cols=128  Identities=17%  Similarity=0.267  Sum_probs=104.2

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      ||++++++.++++..||+|+|+.|++   +.++++++++|+|++|++|+++++||.+..+.+.+.+++.|+||+..+.++
T Consensus        94 Is~~a~~~~lt~~~~y~~f~r~~~~~---~~~~~~~~~~~~w~~vaii~~~~~~~~~~~~~l~~~l~~~gi~v~~~~~~~  170 (382)
T cd06371          94 FSWGCVNYELDDVRSYPTFARTLPSP---SRVLFTVLRYFRWAHVAIVSSPQDIWVETAQKLASALRAHGLPVGLVTSMG  170 (382)
T ss_pred             EecccCchhhcCcccCCCceecCCCc---HHHHHHHHHHCCCeEEEEEEecccchHHHHHHHHHHHHHCCCcEEEEEEec
Confidence            57888999999877899999999987   466888999999999999999999999999999999999999999888887


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCc
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKP  136 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~  136 (144)
                      .+     +.|++.+|++||....+||||++.......|-+...++.++...-.++.
T Consensus       171 ~~-----~~d~~~~L~~lk~~~~~~viv~~~~~~~~~~~~~~~i~~qa~~~Gm~~~  221 (382)
T cd06371         171 PD-----EKGAREALKKVRSADRVRVVIMCMHSVLIGGEEQRLLLETALEMGMTDG  221 (382)
T ss_pred             CC-----HHHHHHHHHHHhcCCCcEEEEEEeeccccCcHHHHHHHHHHHHcCCcCC
Confidence            55     5799999999994334799999876544333344466666666555543

This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge

>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor

Probab=99.77  E-value=8e-18  Score=134.20  Aligned_cols=108  Identities=30%  Similarity=0.570  Sum_probs=97.2

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++++..|||+||+.|++..++.++++++++|+|++|++++++++||....+.+.+.+++.|+||+..+.++
T Consensus       135 is~~~~~~~lt~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~k~vaii~~~~~~g~~~~~~~~~~l~~~gi~i~~~~~~~  214 (410)
T cd06363         135 ISYGASSEVLSNKELYPSFLRTVPSDKDQIEAMVQLLQEFGWNWVAFLGSDDEYGRDGLQLFSELIANTGICIAYQGLIP  214 (410)
T ss_pred             ccccccCccccccccCCCeeEecCCcHHHHHHHHHHHHHCCCcEEEEEEeCChhHHHHHHHHHHHHHHCCeEEEEEEEec
Confidence            56788888898877799999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      ....  .+.|++.+|++|| .+++++||++.
T Consensus       215 ~~~~--~~~d~~~~l~~i~-~~~~dvIil~~  242 (410)
T cd06363         215 LDTD--PETDYQQILKQIN-QTKVNVIVVFA  242 (410)
T ss_pred             CCCc--hHHHHHHHHHHHh-cCCCeEEEEEc
Confidence            5421  3689999999999 68899998865

Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.

>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor

Probab=99.77  E-value=4.8e-18  Score=134.70  Aligned_cols=105  Identities=14%  Similarity=0.237  Sum_probs=92.0

Q ss_pred             CcccCCCCCCcC-CCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHH---HHHHHHHhhhCceEEEEE
Q psy12591          1 VSFWSTSPELSN-KQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKA---FEELEVLLAKYSICIAIK   76 (144)
Q Consensus         1 Is~~at~~~ls~-~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~---~~~~~~~l~~~Gi~V~~~   76 (144)
                      ||++++++.+++ +..||++||+.|++..++.++++++++|+|++|++|+++++||++.   .+.|.+.+++.|+||+..
T Consensus        95 Is~~a~~~~~s~~~~~yp~~~R~~p~~~~~~~a~~~ll~~~~W~~vaiiy~~~~~~~~~~~~~~~l~~~~~~~gi~v~~~  174 (387)
T cd06386          95 ISAGALAAGFSHKKSEYSHLTRVAPSYVKMGETFSALFERFHWRSALLVYEDDKQERNCYFTLEGVHHVFQEEGYHMSIY  174 (387)
T ss_pred             EccccCchhhccCcccCCeeEEecCchHHHHHHHHHHHHhCCCeEEEEEEEcCCCCccceehHHHHHHHHHhcCceEEEE
Confidence            578888899987 6679999999999999999999999999999999999999999876   899999999999999876


Q ss_pred             ecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         77 EKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      +.++..     +.++..+|++|| ... |+||+++.
T Consensus       175 ~~~~~~-----~~d~~~~l~~ik-~~~-rvii~~~~  203 (387)
T cd06386         175 PFDETK-----DLDLDEIIRAIQ-ASE-RVVIMCAG  203 (387)
T ss_pred             ecCCCC-----cccHHHHHHHHH-hcC-cEEEEecC
Confidence            655333     468999999999 454 99999875

Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.

>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)

Probab=99.75  E-value=2.3e-17  Score=128.38  Aligned_cols=108  Identities=31%  Similarity=0.541  Sum_probs=97.0

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++++..+||+||+.|++..++.++++++++++|+++++++.+++||....+.+++.+++.|+||+..+.++
T Consensus        94 i~~~~~~~~l~~~~~~~~~~r~~p~~~~~~~a~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~  173 (350)
T cd06366          94 LSFAATSPSLSSRLQYPYFFRTTPSDSSQNPAIAALLKKFGWRRVATIYEDDDYGSGGLPDLVDALQEAGIEISYRAAFP  173 (350)
T ss_pred             EeccCCCccccccccCCceEEcccchHhHHHHHHHHHHHCCCcEEEEEEEcCcccchhHHHHHHHHHHcCCEEEEEeccC
Confidence            46778888887777799999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      .+.   +..|+..+|++|+ .+++++|+++..
T Consensus       174 ~~~---~~~d~~~~l~~i~-~~~~dvvi~~~~  201 (350)
T cd06366         174 PSA---NDDDITDALKKLK-EKDSRVIVVHFS  201 (350)
T ss_pred             CCC---ChhHHHHHHHHHh-cCCCeEEEEECC
Confidence            752   2579999999999 678999998764

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.

>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases

Probab=99.72  E-value=7.6e-17  Score=128.36  Aligned_cols=109  Identities=21%  Similarity=0.333  Sum_probs=94.2

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++++..||+|||+.|++..++.++++++++|+|++|++|+++++||++..+.|++.+++.|+||+..+.++
T Consensus        95 Is~~a~~~~l~~~~~~~~f~r~~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~~g~~~~~~~~~~~~~~g~~iv~~~~~~  174 (404)
T cd06370          95 ISYKCDEEPVSDKSKYPTFARTVPPSIQVVKSVIALLKHFNWNKFSVVYENDSKYSSVFETLKEEAELRNITISHVEYYA  174 (404)
T ss_pred             EecccCCccccccccCCCeEEcCCCHHHHHHHHHHHHHHCCCcEEEEEEecCcccHHHHHHHHHHHHHcCCEEEEEEEEC
Confidence            47788888999887899999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCC--cchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGV--AEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~--~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+...  ....++..+|++++  +.++++|++.
T Consensus       175 ~~~~~~~~~~~~~~~~l~~~~--~~~~~~v~~~  205 (404)
T cd06370         175 DFYPPDPIMDNPFEDIIQRTK--ETTRIYVFIG  205 (404)
T ss_pred             CCCCchhhhHHHHHHHHHhcc--CCCEEEEEEc
Confidence            65200  01468999999887  3578888765

Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.

>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors

Probab=99.72  E-value=1.5e-16  Score=119.33  Aligned_cols=106  Identities=34%  Similarity=0.623  Sum_probs=96.4

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++++..+|+++|+.|++..++.++++++++++|++++++++++++|....+.+++.+++.|+|+.....++
T Consensus        99 is~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  178 (298)
T cd06269          99 ISYSATSPLLSDKEQFPSFLRTVPSDSSQAQAIVDLLKHFGWTWVGLVYSDDDYGRRLLELLEEELEKNGICVAFVESIP  178 (298)
T ss_pred             EecccCchhhcChhhCCCeEecCCCcHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCeeEEEEEEcC
Confidence            46777788888877899999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      ..     ..++..++++|+ ..++||||++..
T Consensus       179 ~~-----~~~~~~~l~~l~-~~~~~viv~~~~  204 (298)
T cd06269         179 DG-----SEDIRRLLKELK-SSTARVIVVFSS  204 (298)
T ss_pred             CC-----HHHHHHHHHHHH-hcCCcEEEEEec
Confidence            65     478999999999 677899999875

This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va

>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor

Probab=99.71  E-value=1.2e-16  Score=127.08  Aligned_cols=105  Identities=19%  Similarity=0.305  Sum_probs=86.1

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEE-EEEeCC-cchH---HHHHHHHHhhhCceEEEE
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSI-IYEESN-YGVK---AFEELEVLLAKYSICIAI   75 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vai-i~~~~~-~g~~---~~~~~~~~l~~~Gi~V~~   75 (144)
                      ||++++++.++++..||||||+.|++..++.++++++++|+|+++++ ++.+++ +++.   ..+.+.+.+++.|+||+.
T Consensus       102 Is~~a~~~~l~~~~~~~~~~R~~p~~~~~~~a~~~~~~~~~w~~va~ii~~~~~~~~~~~~~~~~~l~~~~~~~gi~v~~  181 (405)
T cd06385         102 VTAGAPALGFGVKDEYATITRTGPTHKKLGEFVLHIHQHFGWRSHAMLIYSDNKVDDRPCYFAMEGLYMELKKNNITVVD  181 (405)
T ss_pred             EccccChhhcCCcccCcceEEecCchHHHHHHHHHHHHhCCCeEEEEEEEecCcccccchHHHHHHHHHHHHhCCeEEEE
Confidence            57889999999888899999999999999999999999999999995 555443 3333   568899999999999988


Q ss_pred             EecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         76 KEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      .+ +...    ++.+++.+|++|| . .+|+||+++.
T Consensus       182 ~~-~~~~----~~~d~~~~l~~ik-~-~~~iii~~~~  211 (405)
T cd06385         182 LV-FEED----DLINYTTLLQDIK-Q-KGRVIYVCCS  211 (405)
T ss_pred             ee-ccCC----chhhHHHHHHHHh-h-cceEEEEeCC
Confidence            76 4322    1578999999998 3 4599998774

Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.

>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family

Probab=99.69  E-value=2.5e-16  Score=124.24  Aligned_cols=123  Identities=14%  Similarity=0.094  Sum_probs=96.8

Q ss_pred             CCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcc
Q psy12591          8 PELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAE   87 (144)
Q Consensus         8 ~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~   87 (144)
                      ..++++..+|+|+|+.|++.+|+.++++++++|+|++|++|++.++.+..+.+.+++.+...++|+.....++...+  .
T Consensus       101 ~~ls~~~~~p~flr~~Psd~~q~~Ai~~Ii~~f~W~~v~iV~~~~~g~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~--~  178 (362)
T cd06378         101 MIMAAKDSGSTFLQFGPSIEQQAAVMLKIMEEYDWHAFSVVTSRFPGYDDFVSAVRTTVDNSFVGWELQSVLTLDMS--D  178 (362)
T ss_pred             ccccCCCCCceEEEeCCCHHHHHHHHHHHHHHCCCeEEEEEEEcCCCHHHHHHHHHHHHhhcccceeEEEEEeeccC--C
Confidence            46677778999999999999999999999999999999999999888888888888888777788766554444321  1


Q ss_pred             hhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCccc
Q psy12591         88 ETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRA  138 (144)
Q Consensus        88 ~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  138 (144)
                      +.++..++.+|| +.++|+||++++.     -....++..+.....|++.|
T Consensus       179 ~~~~~~~l~~lk-~~~arViVl~~s~-----~~a~~if~~A~~~gm~g~~y  223 (362)
T cd06378         179 DDGDARTQRQLK-KLESQVILLYCSK-----EEAEYIFRAARSAGLTGPGY  223 (362)
T ss_pred             CcchHHHHHHHH-hcCCCEEEEECCH-----HHHHHHHHHHHHcCCcCCCe
Confidence            334778888998 6889999999862     23356677777777777655

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in

>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure []

Probab=99.68  E-value=4.1e-16  Score=120.10  Aligned_cols=108  Identities=31%  Similarity=0.563  Sum_probs=86.8

Q ss_pred             CcccCCCCCCcC-CCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhC-ceEEEEEec
Q psy12591          1 VSFWSTSPELSN-KQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKY-SICIAIKEK   78 (144)
Q Consensus         1 Is~~at~~~ls~-~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~-Gi~V~~~~~   78 (144)
                      ||++++++.|++ +..||+|+|+.|++..++.++++++++|+|++|++|++++++|.+..+.|++.+++. +.|+.....
T Consensus        79 is~~~~~~~ls~~~~~~~~~~r~~p~~~~~~~a~~~~l~~~~w~~v~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (348)
T PF01094_consen   79 ISPGSTSPSLSDRKTRYPTFFRTVPSDSSQARALVDLLKHFGWTRVSVVYSDDDYGNSLADSFQDLLRERGGICVAFISV  158 (348)
T ss_dssp             EESSGGSGGGGSTTTTTTTEEESSB-HHHHHHHHHHHHHHTTSSEEEEEEESSHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             eeccccccccccchhhccccccccccHHHHHHHHHHhhhcCCCceeeeeccccccccccchhhhhhhcccccceeccccc
Confidence            578899999999 889999999999999999999999999999999999999999999999999999994 577766233


Q ss_pred             ccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         79 LVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      .....  .+..++...+.+ + +.++|+||+++.
T Consensus       159 ~~~~~--~~~~~~~~~l~~-~-~~~~rvvil~~~  188 (348)
T PF01094_consen  159 VISSD--SDAEELLKKLKE-I-KSGARVVILCSS  188 (348)
T ss_dssp             EETTT--SHHHHHHHHHHH-H-TTTTSEEEEESB
T ss_pred             ccccc--cchhhhhhhhhh-c-cccceeeeeecc
Confidence            33321  123444445544 3 488999999875

; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....

>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family

Probab=99.66  E-value=7.8e-16  Score=122.00  Aligned_cols=106  Identities=17%  Similarity=0.282  Sum_probs=88.2

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcc----hHHHHHHHHHhhhCceEEEEE
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYG----VKAFEELEVLLAKYSICIAIK   76 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g----~~~~~~~~~~l~~~Gi~V~~~   76 (144)
                      ||++++++.|+++..||||||+.|++..++.++++++++|+|+++++++++++++    ....+.+.+.+++.|+||+..
T Consensus       101 Is~~as~~~lt~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vaii~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~  180 (396)
T cd06373         101 LTAGAPAAGFSDKSEYSTLTRTGPSYTKLGEFVLALHEHFNWSRAALLYHDDKNDDRPCYFTLEGVYTVLKEENITVSDF  180 (396)
T ss_pred             ECccCCccccccchhcCceeeccccHHHHHHHHHHHHHHcCCeEEEEEEECCCCCcchHHHHHHHHHHHHhhcCceeeEE
Confidence            5788888999986679999999999999999999999999999999999988764    557888999999999999754


Q ss_pred             ecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         77 EKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                       .+..+.   ...|++.+|++|| .. +|+||+++.
T Consensus       181 -~~~~~~---~~~d~~~~l~~ik-~~-~~vii~~~~  210 (396)
T cd06373         181 -PFDEDK---ELDDYKELLRDIS-KK-GRVVIMCAS  210 (396)
T ss_pred             -eecCCc---cccCHHHHHHHHH-hc-CcEEEEecC
Confidence             354331   1368999999999 44 488888764

Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli

>cd06384 PBP1_NPR_B Ligand-binding domain of type B natriuretic peptide receptor

Probab=99.66  E-value=1.1e-15  Score=121.50  Aligned_cols=127  Identities=12%  Similarity=0.058  Sum_probs=96.2

Q ss_pred             CcccCCCCCCcCC-CCCCceEEecCCchHHHHHHHHHHHhCCCc-EEEEEEEeCCc---ch-HHHHHHHHHhhhCceEEE
Q psy12591          1 VSFWSTSPELSNK-QRFEYFTRTIPSDHHQVKAMVEIVKKLGWS-YVSIIYEESNY---GV-KAFEELEVLLAKYSICIA   74 (144)
Q Consensus         1 Is~~at~~~ls~~-~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~-~Vaii~~~~~~---g~-~~~~~~~~~l~~~Gi~V~   74 (144)
                      |+++++++.++++ ..||+|||+.|++..++.++..++++|+|+ ++++|+.++.+   +. ...+.+.+.++++|+||+
T Consensus       101 Is~~at~~~ls~~~~~y~~~fR~~p~~~~~~~~~~~i~~~~~w~~~vaiiy~~~~~~~~~~~~~~~~~~~~~~~~gi~v~  180 (399)
T cd06384         101 ITAGAPAFGFSNKTDEYRTTVRTGPSTTKLGEFVNHLHEHFNWTSRAALLYLDLKTDDRPHYFISEGVFLALQEENANVS  180 (399)
T ss_pred             EeeccchhhhccccccCCceEEecCcHHHHHHHHHHHHHhCCCcEEEEEEEecCCccCCcceEehHHHHHHHHhcCceEE
Confidence            5788888889876 579999999999999999988899999999 58899865322   21 135667788899999998


Q ss_pred             EEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCcccc
Q psy12591         75 IKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRAR  139 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  139 (144)
                      ..+.+..+     +.|++.+|++|| . ++||||+++.     ......+..++..+-.++|.|-
T Consensus       181 ~~~~~~~~-----~~d~~~~l~~ik-~-~~~vIi~~~~-----~~~~~~i~~qa~~~g~~~~~y~  233 (399)
T cd06384         181 AHPYHIEK-----NSDIIEIIQFIK-Q-NGRIVYICGP-----LETFLEIMLQAQREGLTPGDYV  233 (399)
T ss_pred             EEEEeccc-----hhhHHHHHHHHh-h-cccEEEEeCC-----chHHHHHHHHHHHcCCCCCcEE
Confidence            76554433     579999999999 4 7999998764     2233455667666666666553

Ligand-binding domain of type B natriuretic peptide receptor (NPR-B). NPR-B is one of three known single membrane-spanning natriuretic peptide receptors that have been identified. Natriuretic peptides are family of structurally related but genetically distinct hormones/paracrine factors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B (or GC-B) is a transmembrane guanylyl cyclase, an enzyme that catalyzes the synthesis of cGMP. NPR-B is the predominant natriuretic peptide receptor in the brain. The rank of order activation of NPR-B by natriuretic peptides is CNPANPBNP. Homozygous inactivating mutations in human NPR-B cause a form of short-limbed dwarfism known as acromesomelic dysplasia type Maroteaux.

>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.66  E-value=2.1e-15  Score=116.05  Aligned_cols=105  Identities=22%  Similarity=0.242  Sum_probs=94.7

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++++..++||||+.|++..++.++++++.+++|+++++++.+++||+...+.+++.+++.|++|+..+.++
T Consensus        96 i~~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~  175 (312)
T cd06346          96 ISPSSTSPTLTTLDDNGLFFRTAPSDALQGQALAQLAAERGYKSVATTYINNDYGVGLADAFTKAFEALGGTVTNVVAHE  175 (312)
T ss_pred             EecCCCCccceecCCCceEEEecCCcHHHHHHHHHHHHHcCCCeEEEEEccCchhhHHHHHHHHHHHHcCCEEEEEEeeC
Confidence            45677788888876689999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+     +.||+.++++|+ ..++++|++..
T Consensus       176 ~~-----~~d~~~~v~~l~-~~~pd~v~~~~  200 (312)
T cd06346         176 EG-----KSSYSSEVAAAA-AGGPDALVVIG  200 (312)
T ss_pred             CC-----CCCHHHHHHHHH-hcCCCEEEEec
Confidence            66     578999999999 68899988764

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors

Probab=99.63  E-value=3.6e-15  Score=117.58  Aligned_cols=106  Identities=17%  Similarity=0.320  Sum_probs=93.2

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC-cchHHHHHHHHHhhhCceEEEEEecc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN-YGVKAFEELEVLLAKYSICIAIKEKL   79 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~-~g~~~~~~~~~~l~~~Gi~V~~~~~~   79 (144)
                      |+++++++.++++..|||+||+.|++..++.++++++++++|++++++++++. ||....+.+.+.+++.|+||+..+.+
T Consensus        96 Is~~~~~~~~~~~~~~~~~fr~~~~~~~~~~a~~~~l~~~~~~~v~ii~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~  175 (389)
T cd06352          96 ISWGCVALSLSDKSEYPTLTRTLPPARKLGEAVLALLRWFNWHVAVVVYSDDSENCFFTLEALEAALREFNLTVSHVVFM  175 (389)
T ss_pred             ecccccccccCccccCCceeecCCcHHHHHHHHHHHHHHcCceEEEEEEecCCccHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence            46788888888776799999999999999999999999999999999999887 99999999999999999999999888


Q ss_pred             cCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +.+.   ...++..+|++++ ... |+||+++
T Consensus       176 ~~~~---~~~d~~~~l~~i~-~~~-~vii~~~  202 (389)
T cd06352         176 EDNS---GAEDLLEILQDIK-RRS-RIIIMCG  202 (389)
T ss_pred             cCCc---cchhHHHHHHHhh-hcc-eEEEEEC
Confidence            7652   1468999999999 455 8888765

Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l

>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G

Probab=99.59  E-value=1.5e-14  Score=114.49  Aligned_cols=105  Identities=12%  Similarity=0.288  Sum_probs=82.8

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeC---Ccc--hHHHHHHHHHhhhCceEEEE
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEES---NYG--VKAFEELEVLLAKYSICIAI   75 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~---~~g--~~~~~~~~~~l~~~Gi~V~~   75 (144)
                      ||++++++.++++..||+++|+.|++..++.++++++++|+|++|+++++++   .|+  ....+.+.+.++ .|+++..
T Consensus        96 is~~s~s~~ls~~~~~~~~~r~~p~~~~~~~a~~~l~~~~~w~~vaii~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~  174 (391)
T cd06372          96 FGFVGQTAKLDNRFLYDTYVKLVPPKQKIGEVLQKSLQHFGWKHIGLFGGSSRDSSWDEVDELWKAVENQLK-FHFNITA  174 (391)
T ss_pred             EEeecCCccccccccCCceEEecCchhhHHHHHHHHHHHCCCeEEEEEEeccccchhhhHHHHHHHHHHHHh-hCEEEEE
Confidence            5788889999988889999999999999999999999999999999998542   344  234555566664 6799988


Q ss_pred             EecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         76 KEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      .+.+..+     +.++...+.+.+ .+++|+||+++.
T Consensus       175 ~~~~~~~-----~~d~~~~~l~~~-~~~~~vii~~~~  205 (391)
T cd06372         175 TVRYSSS-----NPDLLQEKLRYI-SSVARVIILICS  205 (391)
T ss_pred             EEecCCC-----ChHHHHHHHHhh-hccceEEEEEcC
Confidence            8877655     356766665666 478999998864

This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.

>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.55  E-value=5.1e-14  Score=109.23  Aligned_cols=104  Identities=15%  Similarity=0.187  Sum_probs=90.9

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCC--CcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEec
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLG--WSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEK   78 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~--W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~   78 (144)
                      |+++++++.++ +..+|++||+.|++..++.++++++++++  |+++++++.++.||....+.+.+.+++.|++|+....
T Consensus        99 i~~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~  177 (345)
T cd06338          99 VAGSGASDSIF-AQGFKYVFGTLPPASQYAKSLLEMLVALDPRPKKVAILYADDPFSQDVAEGAREKAEAAGLEVVYDET  177 (345)
T ss_pred             EecCCCCchHh-hcCCceEEEecCchHHHHHHHHHHHHhcCCCCceEEEEecCCcccHHHHHHHHHHHHHcCCEEEEEec
Confidence            35566666666 44689999999999999999999999888  9999999999999999999999999999999998887


Q ss_pred             ccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         79 LVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      ++.+     ..||+.++++|+ ..++++|+++.
T Consensus       178 ~~~~-----~~d~~~~v~~l~-~~~~d~i~~~~  204 (345)
T cd06338         178 YPPG-----TADLSPLISKAK-AAGPDAVVVAG  204 (345)
T ss_pred             cCCC-----ccchHHHHHHHH-hcCCCEEEECC
Confidence            8755     468999999999 68899998765

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.

>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.52  E-value=2.2e-13  Score=105.96  Aligned_cols=105  Identities=16%  Similarity=0.333  Sum_probs=90.8

Q ss_pred             cccCCCCCCcC---CCCCCceEEecCCchHHHHHHHHHHHh-----CCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEE
Q psy12591          2 SFWSTSPELSN---KQRFEYFTRTIPSDHHQVKAMVEIVKK-----LGWSYVSIIYEESNYGVKAFEELEVLLAKYSICI   73 (144)
Q Consensus         2 s~~at~~~ls~---~~~~p~ffRt~p~d~~~~~a~~~ll~~-----f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V   73 (144)
                      +++++++.+++   +..+|++||+.|++..++..++.++++     ++|++|++++.++.||......+++.+++.|++|
T Consensus        96 ~~~~~~~~~t~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~l~~~~~~g~~~~~~~~~~~~~~G~~v  175 (344)
T cd06345          96 VTGAASPEITTADDYETYKYVFRAGPTNSSYAQSVADALKETLVDKHGFKTAAIVAEDAAWGKGIDAGIKALLPEAGLEV  175 (344)
T ss_pred             eccCCCCcccccccccCCceEEecCCCcHHHHHHHHHHHHHhhcccCCCceEEEEecCchhhhHHHHHHHHHHHHcCCeE
Confidence            55666677763   556999999999999999999998875     8999999999999999999999999999999999


Q ss_pred             EEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         74 AIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      +..+.++.+     ..+++.++++|+ .+++++|++...
T Consensus       176 v~~~~~~~~-----~~d~~~~v~~l~-~~~~d~v~~~~~  208 (344)
T cd06345         176 VSVERFSPD-----TTDFTPILQQIK-AADPDVIIAGFS  208 (344)
T ss_pred             EEEEecCCC-----CCchHHHHHHHH-hcCCCEEEEeec
Confidence            988888765     468999999999 688998887653

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor

Probab=99.51  E-value=2.3e-13  Score=107.73  Aligned_cols=102  Identities=19%  Similarity=0.372  Sum_probs=82.3

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++++  .++|+|+.|++..++.++++++++|+|++|+++|++++ |....+.|.+.+++.|+||+. +.++
T Consensus       100 Is~~~t~~~lt~~--~~~~~~~~~~~~~~~~a~~~~~~~~~wk~vaily~~~~-g~~~l~~~~~~~~~~g~~v~~-~~~~  175 (384)
T cd06393         100 IQLRWKHHPLDNK--DTFYVNLYPDYASLSHAILDLVQYLKWRSATVVYDDST-GLIRLQELIMAPSRYNIRLKI-RQLP  175 (384)
T ss_pred             EeccCCCcccCcc--ceeEEEeccCHHHHHHHHHHHHHHcCCcEEEEEEeCch-hHHHHHHHHHhhhccCceEEE-EECC
Confidence            4677888888865  35778888888899999999999999999999998764 655566788888899999986 4465


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      .+     +.||+.+|++|| ..++++||+.+.
T Consensus       176 ~~-----~~d~~~~L~~ik-~~~~~~iil~~~  201 (384)
T cd06393         176 TD-----SDDARPLLKEMK-RGREFRIIFDCS  201 (384)
T ss_pred             CC-----chHHHHHHHHHh-hcCceEEEEECC
Confidence            44     579999999999 677887777653

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated

>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)

Probab=99.47  E-value=6.3e-13  Score=102.38  Aligned_cols=103  Identities=20%  Similarity=0.262  Sum_probs=88.6

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHH-HhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIV-KKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll-~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      +++++++.+++. .||++||+.|++..++.++++++ ++++|++|++++.+++||+...+.+.+.+++.|++|+..+.++
T Consensus        95 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~  173 (334)
T cd06342          95 SPAATNPKLTER-GYKNVFRVVARDDQQGPAAAKYAVETLKAKKVAIIDDKTAYGQGLADEFKKALKAAGGKVVAREGTT  173 (334)
T ss_pred             ecCCCCchhhcC-CCceEEeccCCcHHHHHHHHHHHHHhcCCCEEEEEeCCcchhhHHHHHHHHHHHHcCCEEEEEecCC
Confidence            455555556554 58999999999999999999975 6789999999999999999999999999999999999988887


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+     ..+++.++.+|+ ..++++|++..
T Consensus       174 ~~-----~~d~~~~l~~i~-~~~~~~vi~~~  198 (334)
T cd06342         174 DG-----ATDFSAILTKIK-AANPDAVFFGG  198 (334)
T ss_pred             CC-----CccHHHHHHHHH-hcCCCEEEEcC
Confidence            65     468999999999 67889888753

This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.

>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.46  E-value=6.5e-13  Score=103.86  Aligned_cols=104  Identities=15%  Similarity=0.183  Sum_probs=90.9

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHH-HHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEI-VKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~l-l~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      ++.++++.++++..+||+||+.|++..++.+++++ +++++|+++++++.++.||....+.+.+.+++.|+|++..+.++
T Consensus       103 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~  182 (362)
T cd06343         103 FPASGASKWNDPKPFPWTFGWQPSYQDEARIYAKYLVEEKPNAKIAVLYQNDDFGKDYLKGLKDGLGDAGLEIVAETSYE  182 (362)
T ss_pred             ecccccHhhhCCCCCCceEecCCChHHHHHHHHHHHHHhCCCceEEEEEeccHHHHHHHHHHHHHHHHcCCeEEEEeeec
Confidence            44455666777656999999999999999999996 56789999999999999999999999999999999999988887


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+     ..|++.++++|+ ..++++|+++.
T Consensus       183 ~~-----~~d~~~~v~~i~-~~~~d~v~~~~  207 (362)
T cd06343         183 VT-----EPDFDSQVAKLK-AAGADVVVLAT  207 (362)
T ss_pred             CC-----CccHHHHHHHHH-hcCCCEEEEEc
Confidence            65     568999999999 68899998865

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor

Probab=99.46  E-value=1.4e-12  Score=102.94  Aligned_cols=101  Identities=14%  Similarity=0.329  Sum_probs=76.4

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCc--eEEEEEec
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYS--ICIAIKEK   78 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~G--i~V~~~~~   78 (144)
                      |+++++.+.+++  .+||+||+.|+.   ..++++++++++|++|++++++++ |....+.+.+.+++.|  +.|... .
T Consensus        90 i~~~~~~~~l~~--~~~~~fr~~p~~---~~a~~~~~~~~~wk~vaii~~~~~-~~~~~~~~~~~~~~~g~~i~v~~~-~  162 (382)
T cd06380          90 ITPSFPTNDLDD--GNQFVLQMRPSL---IQALVDLIEHYGWRKVVYLYDSDR-GLLRLQQLLDYLREKDNKWQVTAR-R  162 (382)
T ss_pred             EecCCCcccCCC--CCcEEEEeccch---hHHHHHHHHhcCCeEEEEEECCCc-chHHHHHHHHHHhccCCceEEEEE-E
Confidence            456677777743  589999998863   458889999999999999998775 5566777888888888  666543 2


Q ss_pred             ccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         79 LVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      +....   .+.||+.+|++|| ..++|+||+.+.
T Consensus       163 ~~~~~---~~~d~~~~L~~ik-~~~~~~iil~~~  192 (382)
T cd06380         163 VDNVT---DEEEFLRLLEDLD-RRKEKRIVLDCE  192 (382)
T ss_pred             ecCCC---cHHHHHHHHHHhh-cccceEEEEECC
Confidence            33221   2579999999999 678999998754

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita

>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.45  E-value=6e-13  Score=103.82  Aligned_cols=103  Identities=17%  Similarity=0.267  Sum_probs=89.0

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCC------CcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEE
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLG------WSYVSIIYEESNYGVKAFEELEVLLAKYSICIAI   75 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~------W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~   75 (144)
                      +++++++.++.. .+||+||+.|++..++.++++++.+++      |+++++++.++.||....+.+...+++.|++|+.
T Consensus        99 ~~~~~~~~l~~~-~~~~~fr~~p~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~vv~  177 (347)
T cd06340          99 VDGAVSDSITER-GFKYTFRITPHDGMFTRDMFDFLKDLNEKTGKPLKTVALVHEDTEFGTSVAEAIKKFAKERGFEIVE  177 (347)
T ss_pred             eccccchHHhhc-CCceEEecCCChHHHHHHHHHHHHHhhHhcCCCCceEEEEecCchHhHHHHHHHHHHHHHcCCEEEE
Confidence            445566667643 589999999999999999999988764      5999999999999999999999999999999999


Q ss_pred             EecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         76 KEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++.+     +.||+.++.+|+ ..++++|++..
T Consensus       178 ~~~~~~~-----~~d~~~~i~~l~-~~~~d~v~~~~  207 (347)
T cd06340         178 DISYPAN-----ARDLTSEVLKLK-AANPDAILPAS  207 (347)
T ss_pred             eeccCCC-----CcchHHHHHHHH-hcCCCEEEEcc
Confidence            8888765     468999999999 68899888764

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.45  E-value=1.1e-12  Score=102.43  Aligned_cols=103  Identities=17%  Similarity=0.125  Sum_probs=90.3

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      ++.++++.++.. .+|++||+.|++..++.+++++++..+|++|++++.|+.||....+.+++.+++.|++|+....++.
T Consensus        99 ~~~~~~~~~~~~-~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~~~g~~~~~~~~~~l~~~G~~vv~~~~~~~  177 (347)
T cd06336          99 TAYSSDLSIDTA-GNPLTFRVPPIYNVYGVPFLAYAKKPGGKKVALLGPNDAYGQPWVAAYKAAWEAAGGKVVSEEPYDP  177 (347)
T ss_pred             eccCCccccccc-CCceEEEecCCchhHHHHHHHHHhhcCCceEEEEccCCchhHHHHHHHHHHHHHcCCEEeeecccCC
Confidence            455666666633 4799999999999999999999887999999999999999999999999999999999998888876


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +     ..||+.++.+|| .+++++|+++.
T Consensus       178 ~-----~~D~s~~i~~i~-~~~~d~v~~~~  201 (347)
T cd06336         178 G-----TTDFSPIVTKLL-AEKPDVIFLGG  201 (347)
T ss_pred             C-----CcchHHHHHHHH-hcCCCEEEEcC
Confidence            5     578999999999 68899988764

This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors

Probab=99.44  E-value=1.3e-12  Score=100.90  Aligned_cols=116  Identities=16%  Similarity=0.214  Sum_probs=81.8

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCce---EEEEEe
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSI---CIAIKE   77 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi---~V~~~~   77 (144)
                      |+++++++.++   .++++||+.|++..++.++++++++++|+++++++++++++..+.    +.+++.|.   .+.. +
T Consensus        91 Is~~~~~~~~~---~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~vavl~~~~~~~~~l~----~~~~~~~~~g~~v~~-~  162 (327)
T cd06382          91 IQTRWDPEPKS---NRQFTINLYPSNADLSRAYADIVKSFNWKSFTIIYESAEGLLRLQ----ELLQAFGISGITITV-R  162 (327)
T ss_pred             eeccCCcCccc---cccceEEeCCCHHHHHHHHHHHHHhcCCcEEEEEecChHHHHHHH----HHHHhhccCCCeEEE-E
Confidence            35566666665   367899999999999999999999999999999999988765544    44444444   3443 4


Q ss_pred             cccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCc
Q psy12591         78 KLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKP  136 (144)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~  136 (144)
                      .++.+     . ||+.+|++|| ..++++||+++.     +-+...++.++.....++|
T Consensus       163 ~~~~~-----~-d~~~~l~~i~-~~~~d~vv~~~~-----~~~~~~~~~qa~~~g~~~~  209 (327)
T cd06382         163 QLDDD-----L-DYRPLLKEIK-NSGDNRIIIDCS-----ADILIELLKQAQQVGMMSE  209 (327)
T ss_pred             EccCC-----c-cHHHHHHHHH-hcCceEEEEECC-----HHHHHHHHHHHHHhCcccc
Confidence            45443     4 8999999999 688999988764     2223344444444444443

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri

>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor

Probab=99.42  E-value=2.7e-12  Score=101.43  Aligned_cols=87  Identities=15%  Similarity=0.286  Sum_probs=77.0

Q ss_pred             CCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH
Q psy12591         16 FEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV   95 (144)
Q Consensus        16 ~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l   95 (144)
                      .+|+.++.|+   +++|+++++++|+|++|++||+++ ||....+.|.+.++++|+||.....++.+     +.+++.+|
T Consensus        94 ~~~~i~~~P~---~~~Ai~diI~~~~W~~v~iIYd~d-~g~~~lq~l~~~~~~~~~~I~~~~~~~~~-----~~d~~~~L  164 (364)
T cd06390          94 NQFVLQLRPE---LQDALISVIEHYKWQKFVYIYDAD-RGLSVLQKVLDTAAEKNWQVTAVNILTTT-----EEGYRKLF  164 (364)
T ss_pred             CceEEEeChh---HHHHHHHHHHHcCCcEEEEEEeCC-ccHHHHHHHHHhhhccCceeeEEEeecCC-----hHHHHHHH
Confidence            4578999997   899999999999999999999655 99999999999999999999987766533     56899999


Q ss_pred             HHHhcCCCceEEEEeeE
Q psy12591         96 LKLLTKPRARGLFKRLK  112 (144)
Q Consensus        96 ~~lk~~~~arvii~~~~  112 (144)
                      ++|| +.++|+||++++
T Consensus       165 ~~ik-~~~~rvIVl~~~  180 (364)
T cd06390         165 QDLD-KKKERLIVVDCE  180 (364)
T ss_pred             Hhcc-ccCCeEEEEECC
Confidence            9998 789999999874

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins

Probab=99.41  E-value=2.1e-12  Score=100.50  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=89.6

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCC-CcEEEEEEEeCCcchHHHHHHHHHhhh--CceEEEEEec
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLG-WSYVSIIYEESNYGVKAFEELEVLLAK--YSICIAIKEK   78 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~-W~~Vaii~~~~~~g~~~~~~~~~~l~~--~Gi~V~~~~~   78 (144)
                      +++++++.+++...+|++||+.|++..++..+++++...+ |+++++++.++.||....+.+.+.+++  .|++|+..+.
T Consensus       102 ~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~l~~~~~~~~~~k~v~i~~~~~~~g~~~~~~~~~~~~~~~~G~~vv~~~~  181 (342)
T cd06329         102 NYASVAPALTGEKCSFWHFRTDANTDMKMEALASYIKKQPDGKKVYLINQDYSWGQDVAAAFKAMLAAKRPDIQIVGEDL  181 (342)
T ss_pred             ecCCCCchhhhccCcceEEEecCChHHHHHHHHHHHHhcccCceEEEEeCChHHHHHHHHHHHHHHHhhcCCcEEeceec
Confidence            4455666777655689999999999999999999987765 999999999999999999999999999  9999998877


Q ss_pred             ccCCCCCcch-hhHHHHHHHHhcCCCceEEEEee
Q psy12591         79 LVKDSGVAEE-TAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        79 ~~~~~~~~~~-~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      ++.+     . .|++.++++|+ ..++++|++..
T Consensus       182 ~~~~-----~~~d~~~~i~~l~-~~~~d~v~~~~  209 (342)
T cd06329         182 HPLG-----KVKDFSPYVAKIK-ASGADTVITGN  209 (342)
T ss_pred             cCCC-----CCCchHHHHHHHH-HcCCCEEEEcc
Confidence            7655     4 68999999999 68888888754

Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.

>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.40  E-value=5.4e-12  Score=98.46  Aligned_cols=104  Identities=15%  Similarity=0.220  Sum_probs=88.3

Q ss_pred             cccCCCCCCcCC-CCCCceEEecCCchHHHHHHHHHH-HhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecc
Q psy12591          2 SFWSTSPELSNK-QRFEYFTRTIPSDHHQVKAMVEIV-KKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKL   79 (144)
Q Consensus         2 s~~at~~~ls~~-~~~p~ffRt~p~d~~~~~a~~~ll-~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~   79 (144)
                      ++.++.+.++.. ..++|+||+.|++..++.++++++ ++.+|++|++++.+++||+...+.+.+.+++.|++++....+
T Consensus        96 ~~~~~~~~l~~~~~~~~~~Fr~~~~~~~~~~~~a~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~  175 (347)
T cd06335          96 GPWAAGTPITRNGAPPNYIFRVSADDSIQAPFLVDEAVKRGGFKKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWF  175 (347)
T ss_pred             ecCCCCcccccCCCCCCCEEEeccChHHHHHHHHHHHHHhcCCCeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeee
Confidence            445555556543 347899999999999999999976 567799999999999999999999999999999999988888


Q ss_pred             cCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +.+     ..|++.++++|+ ..++++|++..
T Consensus       176 ~~~-----~~d~s~~i~~i~-~~~~d~v~~~~  201 (347)
T cd06335         176 NWG-----DKDMTAQLLRAK-AAGADAIIIVG  201 (347)
T ss_pred             cCC-----CccHHHHHHHHH-hCCCCEEEEEe
Confidence            765     468999999999 68898888765

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=99.40  E-value=3.1e-12  Score=100.37  Aligned_cols=104  Identities=14%  Similarity=0.159  Sum_probs=88.8

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCC-----CcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEE
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLG-----WSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIK   76 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~-----W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~   76 (144)
                      +++++++.+++...+||+||+.|++..++.++++++...+     .++|++++.|+.||+...+.+.+.+++.|++|+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~Fr~~~~~~~~~~~l~~~~~~~~~~~~~~~kvaiv~~~~~~g~~~~~~~~~~~~~~G~~vv~~  174 (351)
T cd06334          95 SGSYGATLADDGAVFPYNFPVGPTYSDQARALVQYIAEQEGGKLKGKKIALVYHDSPFGKEPIEALKALAEKLGFEVVLE  174 (351)
T ss_pred             ecccchhhccCCCCCCeeeeCCCCHHHHHHHHHHHHHHhcccCCCCCeEEEEeCCCccchhhHHHHHHHHHHcCCeeeee
Confidence            3444455555455699999999999999999999886654     69999999999999999999999999999999988


Q ss_pred             ecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         77 EKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +.++.+     ..||+.++.+|| ..++++|++..
T Consensus       175 ~~~~~~-----~~D~~~~v~~i~-~~~pd~V~~~~  203 (351)
T cd06334         175 PVPPPG-----PNDQKAQWLQIR-RSGPDYVILWG  203 (351)
T ss_pred             ccCCCC-----cccHHHHHHHHH-HcCCCEEEEec
Confidence            888766     579999999999 68899998764

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors

Probab=99.40  E-value=3.6e-12  Score=98.06  Aligned_cols=118  Identities=14%  Similarity=0.226  Sum_probs=82.7

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++.  .+++.|  .|++..++.++++++++++|+++++++++++++.. .+.+.+.++++|++|+..+.. 
T Consensus        90 is~~~~~~~~~~--~~~~~~--~~~~~~~~~a~~~~~~~~~w~~vaii~~~~~~~~~-l~~~~~~~~~~g~~v~~~~~~-  163 (324)
T cd06368          90 ITTSWSPNPKPR--QFTINL--YPSMRDLSDALLDLIKYFGWRKFVYIYDSDEGLLR-LQELLDALSPKGIQVTVRRLD-  163 (324)
T ss_pred             EEecCCcCCCCC--cceEEe--cCCHHHHHHHHHHHHHhcCCCEEEEEECCcHhHHH-HHHHHHhhccCCceEEEEEec-
Confidence            456677776662  355544  47777999999999999999999999987765544 455667788889999876533 


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcC
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTK  135 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~  135 (144)
                      ..     ..|++.+|++|| ..++++||+++.     +-+...+++++.....+.
T Consensus       164 ~~-----~~d~~~~l~~i~-~~~~d~Vi~~~~-----~~~~~~i~~qa~~~g~~~  207 (324)
T cd06368         164 DD-----TDMYRPLLKEIK-REKERRIILDCS-----PERLKEFLEQAVEVGMMS  207 (324)
T ss_pred             CC-----chHHHHHHHHHh-hccCceEEEECC-----HHHHHHHHHHHHHhcccc
Confidence            33     238999999999 688999988763     233334455544443333

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors

>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional

Probab=99.39  E-value=2.7e-12  Score=101.34  Aligned_cols=103  Identities=17%  Similarity=0.270  Sum_probs=90.0

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHH-HhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIV-KKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKL   79 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll-~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~   79 (144)
                      |++.++++.+++. .+||+||+.|.+..++.++++++ +.++|+++++++.|+.||+...+.+.+.+++.|++++..+.+
T Consensus       120 i~~~s~~~~l~~~-~~~~~fr~~~~~~~~~~~~~~~~~~~~~~k~va~i~~d~~~g~~~~~~~~~~~~~~G~~v~~~~~~  198 (369)
T PRK15404        120 ITPAATAPELTAR-GYQLIFRTIGLDSDQGPTAAKYILEKVKPKRIAVLHDKQQYGEGLARSVKDGLKKAGANVVFFEGI  198 (369)
T ss_pred             EecCCCCHHHhcC-CCceEEeCCCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEee
Confidence            3566777888763 58999999999999999999965 667999999999999999999999999999999999988888


Q ss_pred             cCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      +.+     ..||+.++++|| ..++++|++.
T Consensus       199 ~~g-----~~D~~~~v~~l~-~~~~d~v~~~  223 (369)
T PRK15404        199 TAG-----DKDFSALIAKLK-KENVDFVYYG  223 (369)
T ss_pred             CCC-----CCchHHHHHHHH-hcCCCEEEEC
Confidence            776     468999999999 6889988753

>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors

Probab=99.39  E-value=6.7e-12  Score=99.30  Aligned_cols=108  Identities=13%  Similarity=0.081  Sum_probs=74.3

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcch-HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGV-KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD   93 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~-~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~   93 (144)
                      +||+|+|+.|++..++.++++++++|+|++|++||++++.+. ...+.+++.....++|+.     +..     ..++..
T Consensus       106 ~~p~~ir~~Ps~~~~~~Ai~dlI~~f~W~~v~iIYddd~gl~~~l~~~l~~~~~~~~~~v~-----~~~-----~~~~~~  175 (368)
T cd06383         106 EQPYLIQLMPPADDIVEAIRDIVSYYNITNAAILYDDDFVMDHKYKSLLQNWPTRHVITII-----NSI-----IDEVRE  175 (368)
T ss_pred             cCceEEEEeCChHHHHHHHHHHHHHCCCcEEEEEEEcCchhhHHHHHHHHhHHhcCCEEEE-----ecc-----chhHHH
Confidence            699999999999999999999999999999999997776544 233344434445566653     111     246889


Q ss_pred             HHHHHhcCCCc-eEEEEeeEEeeeCCcchhhhhHHHHHHHhcCccc
Q psy12591         94 IVLKLLTKPRA-RGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRA  138 (144)
Q Consensus        94 ~l~~lk~~~~a-rvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  138 (144)
                      +|++|| ..++ ||||.+..     .-....++..+.....++..|
T Consensus       176 ~Lk~lk-~~~~~rIIi~~s~-----~~~~~~il~qA~~lgm~~~~y  215 (368)
T cd06383         176 QIKRLR-NLDIKNIFILGST-----EEIIRYVLDQALAEGFMGRKY  215 (368)
T ss_pred             HHHHHH-hCCCeEEEEEeCC-----HHHHHHHHHHHHHcCCcCCce
Confidence            999999 5667 55555442     012344556666555555554

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.

>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems

Probab=99.39  E-value=8.4e-12  Score=93.42  Aligned_cols=105  Identities=25%  Similarity=0.409  Sum_probs=88.0

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      ++.+..+.++++..+|++||+.|++..++..+++++++++|+++++++.++.+|....+.+++.+++.|+++.....++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~iv~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~  175 (299)
T cd04509          96 SPGATAPGLTDKKGYPYLFRTGPSDEQQAEALADYIKEYNWKKVAILYDDDSYGRGLLEAFKAAFKKKGGTVVGEEYYPL  175 (299)
T ss_pred             eccCCCcccccccCCCCEEEecCCcHHHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEecCCC
Confidence            34445555555556999999999999999999999999999999999999889999999999999999999987766665


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      +     ..++...+++++ ..++++|+++..
T Consensus       176 ~-----~~~~~~~~~~l~-~~~~~~v~~~~~  200 (299)
T cd04509         176 G-----TTDFTSLLQKLK-AAKPDVIVLCGS  200 (299)
T ss_pred             C-----CccHHHHHHHHH-hcCCCEEEEccc
Confidence            4     357889999998 566888888764

This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th

>cd06349 PBP1_ABC_ligand_binding_like_14 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems

Probab=99.39  E-value=7.2e-12  Score=97.20  Aligned_cols=102  Identities=15%  Similarity=0.236  Sum_probs=88.1

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHH-HhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIV-KKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll-~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      +++++.+.+++.  .+|+||+.|++..++.++++++ ++++|+++++++.+++||......+...+++.|++|+....++
T Consensus        96 ~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~  173 (340)
T cd06349          96 SPTNSHPDFTKG--GDFIFRNSTSQAIEAPLLADYAVKDLGFKKVAILSVNTDWGRTSADIFVKAAEKLGGQVVAHEEYV  173 (340)
T ss_pred             ecCCCCCccccC--CCeEEEccCCcHHHHHHHHHHHHHHcCCcEEEEEecCChHhHHHHHHHHHHHHHcCCEEEEEEEeC
Confidence            455566666653  6899999999999999999975 7789999999999999999999999999999999999888777


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+     ..|++.++.+|+ .+++++|++..
T Consensus       174 ~~-----~~d~~~~v~~l~-~~~~d~v~~~~  198 (340)
T cd06349         174 PG-----EKDFRPTITRLR-DANPDAIILIS  198 (340)
T ss_pred             CC-----CCcHHHHHHHHH-hcCCCEEEEcc
Confidence            65     468999999999 68899988765

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)

Probab=99.39  E-value=7.6e-12  Score=95.82  Aligned_cols=125  Identities=17%  Similarity=0.190  Sum_probs=86.4

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      +++++.+.++++..+|+++|+.|++..++.++++++++|+|++++++|+++++.....+ +.+.....|.++... .+..
T Consensus        92 s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~a~~~~l~~~~w~~v~iiy~~~~~~~~l~~-~~~~~~~~~~~v~~~-~~~~  169 (328)
T cd06351          92 SISGGSEGLSDKEESSTTLQLYPSLEDLADALLDLLEYYNWTKFAIIYDSDEGLSRLQE-LLDESGIKGIQVTVR-RLDL  169 (328)
T ss_pred             EeecCcccccccccccceEEecCCHHHHHHHHHHHHHHcCCcEEEEEEeCchHHHHHHH-HHHhhcccCceEEEE-EecC
Confidence            45666676776567999999999999999999999999999999999999886544433 333333445555443 4444


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCc-eEEEEeeEEeeeCCcchhhhhHHHHHHHhcCcccc
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRA-RGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRAR  139 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~a-rvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  139 (144)
                      +     ..+++.+|++++ ..++ ++|+++...     -....++.++.....+++.|.
T Consensus       170 ~-----~~~~~~~l~~l~-~~~~~~vil~~~~~-----~~~~~~l~~a~~~gm~~~~~~  217 (328)
T cd06351         170 D-----DDNYRQLLKELK-RSESRRIILDCSSE-----EEAKEILEQAVELGMMGYGYH  217 (328)
T ss_pred             C-----chhHHHHHHHHh-hcccceEEEECCcH-----HHHHHHHHHHHHhccccCCcE
Confidence            3     237999999999 6777 777666531     222345666555555555553

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors

>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family

Probab=99.38  E-value=4e-12  Score=98.48  Aligned_cols=105  Identities=10%  Similarity=-0.019  Sum_probs=91.5

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      +++++++.+++...+||+||+.|++..++..+++++...+++++++++.++.||+...+.+++.+++.|++|+....++.
T Consensus        95 ~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~  174 (334)
T cd06327          95 VTGAGSDDLTGKDCSPYTFHWAYDTYMLANGTAPALVKAGGKKWFFLTADYAFGHSLERDARKVVKANGGKVVGSVRHPL  174 (334)
T ss_pred             ecCCCccccccCCCCCceEEccCChHHHHHHHHHHHHHhcCCeEEEEecchHHhHHHHHHHHHHHHhcCCEEcCcccCCC
Confidence            55666777776655899999999999999999998766679999999999999999999999999999999998888876


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      +     ..||+.++++|+ ..++++|++...
T Consensus       175 ~-----~~d~~~~v~~l~-~~~~d~v~~~~~  199 (334)
T cd06327         175 G-----TSDFSSYLLQAQ-ASGADVLVLANA  199 (334)
T ss_pred             C-----CccHHHHHHHHH-hCCCCEEEEecc
Confidence            5     568999999999 688999888653

Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.

>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene

Probab=99.37  E-value=1.2e-11  Score=95.51  Aligned_cols=104  Identities=12%  Similarity=0.088  Sum_probs=89.3

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      +++++++.+++...+|++||+.|++..++..+++++...+|+++++++.++.||+...+.+.+.+++.|++++....++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~  173 (336)
T cd06360          94 NPNAGADDLTGRLCAPNFFRTSFSNAQWAAPMGKYAADDGYKKVVTVAWDYAFGYEVVEGFKEAFTEAGGKIVKELWVPF  173 (336)
T ss_pred             ecCCCCccccccCCCCcEEEEeCchHHHHHHHHHHHHHcCCCeEEEEeccchhhHHHHHHHHHHHHHcCCEEEEEEecCC
Confidence            44556666776656899999999999999999999988899999999999999999999999999999999988777765


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +     ..||+.++++|+ ..++++|++..
T Consensus       174 ~-----~~d~~~~v~~~~-~~~pd~v~~~~  197 (336)
T cd06360         174 G-----TSDFASYLAQIP-DDVPDAVFVFF  197 (336)
T ss_pred             C-----CcchHHHHHHHH-hcCCCEEEEec
Confidence            5     569999999999 67888887653

This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.

>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.36  E-value=7.5e-12  Score=96.96  Aligned_cols=103  Identities=25%  Similarity=0.241  Sum_probs=85.2

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCC-CcEEEEEEEeCC-cchHHHHHHHHHhhh-CceEEEEEe
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLG-WSYVSIIYEESN-YGVKAFEELEVLLAK-YSICIAIKE   77 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~-W~~Vaii~~~~~-~g~~~~~~~~~~l~~-~Gi~V~~~~   77 (144)
                      |+++++++.+++  .+||+||+.|++..++.++++++++.+ |+++++++.+++ ||+...+.+.+.+++ .|+++....
T Consensus        94 i~~~a~~~~lt~--~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~g~~~~~~~~~~~~~~~g~~v~~~~  171 (332)
T cd06344          94 ISPTSTSVKLSN--PGPYFFRTVPSNAVAARALAKYLKKKNKIKKVAIFYNSTSPYSQSLKQEFTSALLERGGGIVVTPC  171 (332)
T ss_pred             EccCcCchhhcC--CCCcEEEeCCCcHHHHHHHHHHHHhhcCCCeEEEEeCCCchHhHHHHHHHHHHHHHhcCCeeeeec
Confidence            355566677763  489999999999999999999998776 999999999876 999999999999999 599987655


Q ss_pred             cccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         78 KLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+...     +.++..++.+|+ ..++++|++..
T Consensus       172 ~~~~~-----~~~~~~~v~~i~-~~~~d~v~~~~  199 (332)
T cd06344         172 DLSSP-----DFNANTAVSQAI-NNGATVLVLFP  199 (332)
T ss_pred             cCCCC-----CCCHHHHHHHHH-hcCCCEEEEeC
Confidence            44432     467889999999 67889888764

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]

Probab=99.33  E-value=1.5e-11  Score=97.01  Aligned_cols=104  Identities=22%  Similarity=0.282  Sum_probs=88.3

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHH-HhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIV-KKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKL   79 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll-~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~   79 (144)
                      |+++++++.+......+++||+.|++..|+..+++++ +.++.+++++++.++.||++..+.+++.++++|++++..+.+
T Consensus       106 i~p~st~~~~~~~~~~~~vfr~~~~~~~q~~~~~~~l~~~~~~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~  185 (366)
T COG0683         106 ISPSATAPQLTGRGLKPNVFRTGPTDNQQAAAAADYLVKKGGKKRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVY  185 (366)
T ss_pred             EeecCCCCcccccccccceEEecCChHHHHHHHHHHHHHhcCCcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEEEEee
Confidence            4677888888777655669999999999999999976 567777999999999999999999999999999986666777


Q ss_pred             cCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      .+..     .+|..++++++ ..++++|++.
T Consensus       186 ~~~~-----~~~~~~v~~i~-~~~~d~v~~~  210 (366)
T COG0683         186 APGD-----TDFSALVAKIK-AAGPDAVLVG  210 (366)
T ss_pred             CCCC-----CChHHHHHHHH-hcCCCEEEEC
Confidence            7663     45999999999 6888876654

>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.32  E-value=3.5e-11  Score=92.57  Aligned_cols=102  Identities=17%  Similarity=0.216  Sum_probs=85.5

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHH-HhCCCcEEEEEEEeC-CcchHHHHHHHHHhhhCceEEEEEecc
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIV-KKLGWSYVSIIYEES-NYGVKAFEELEVLLAKYSICIAIKEKL   79 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll-~~f~W~~Vaii~~~~-~~g~~~~~~~~~~l~~~Gi~V~~~~~~   79 (144)
                      +++++.+.+++.  .+++||+.|++..++.++++++ ++++|++|++|+.++ +|+....+.+++.+++.|+|++....+
T Consensus        96 ~~~~~~~~~~~~--~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~  173 (334)
T cd06347          96 TPSATNPKVTQG--KDYVFRVCFIDPFQGTVMAKFATENLKAKKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAEETF  173 (334)
T ss_pred             cCCCCCCCcccC--CCeEEEeeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEEe
Confidence            455556666554  3489999999999999999976 678999999999876 899999999999999999999988888


Q ss_pred             cCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +.+     ..++..++++++ ..++++|++..
T Consensus       174 ~~~-----~~d~~~~~~~~~-~~~~d~i~~~~  199 (334)
T cd06347         174 NAG-----DTDFSAQLTKIK-AKNPDVIFLPG  199 (334)
T ss_pred             cCC-----CCcHHHHHHHHH-hcCCCEEEEcC
Confidence            765     457999999999 67899888764

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria

Probab=99.31  E-value=2.4e-11  Score=94.34  Aligned_cols=102  Identities=17%  Similarity=0.178  Sum_probs=87.0

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      +++++++.++....++|+||+.+++..+...+...+... +++|++++.+++||++..+.+.+.+++.|++++....++.
T Consensus        97 ~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~v~~i~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~  175 (333)
T cd06328          97 VEPAAADSITGKNWNRYTFRTGRNSSQDAIAAAAALGKP-GKKIATLAQDYAFGRDGVAAFKAALEKLGAAIVTEEYAPT  175 (333)
T ss_pred             ecCCCCchhhccCCCCcEEEecCChHHHHHHHHHHHHhc-CCeEEEEecCccccHHHHHHHHHHHHhCCCEEeeeeeCCC
Confidence            455667777765546999999998888888888777655 8999999999999999999999999999999999888877


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      +     ..||+.++.+|+ ..++++|++.
T Consensus       176 ~-----~~d~~~~v~~l~-~~~pd~V~~~  198 (333)
T cd06328         176 D-----TTDFTPYAQRLL-DALKKVLFVI  198 (333)
T ss_pred             C-----CcchHHHHHHHH-hcCCCEEEEE
Confidence            5     578999999999 6888888764

Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.

>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins

Probab=99.31  E-value=1.7e-11  Score=95.18  Aligned_cols=105  Identities=18%  Similarity=0.188  Sum_probs=84.6

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCC--CcEEEEEEEeCCcchHHHHHHHHHhhhCceE--EEEEe
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLG--WSYVSIIYEESNYGVKAFEELEVLLAKYSIC--IAIKE   77 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~--W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~--V~~~~   77 (144)
                      ++.++++.+.+...+|++||+.|++..+...+++++++++  |+++++++.++.||....+.+++.+++.|++  ++...
T Consensus        96 ~~~s~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~g~~~~~~~~~~~~~~g~~~~~v~~~  175 (346)
T cd06330          96 ATDPGTPRLTEEPDNPYVFRTRNSTIMDAVAGALYAAKLDKKAKTWATINPDYAYGQDAWADFKAALKRLRPDVEVVSEQ  175 (346)
T ss_pred             EcCCCCcccccCCCCCceEEecCChHHHHHHHHHHHHHhCcCccEEEEECCchHHHHHHHHHHHHHHHHhCCCCeecccc
Confidence            4456666676655699999999999999999999988774  9999999999999999999999999998654  44333


Q ss_pred             cccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         78 KLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        78 ~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      .++..     ..|++.++.+|+ ..++++|+++..
T Consensus       176 ~~~~~-----~~d~~~~v~~i~-~~~~d~ii~~~~  204 (346)
T cd06330         176 WPKLG-----APDYGSEITALL-AAKPDAIFSSLW  204 (346)
T ss_pred             cCCCC-----CcccHHHHHHHH-hcCCCEEEEecc
Confidence            33322     578999999999 678888887643

Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.

>KOG1055|consensus

Probab=99.30  E-value=7.2e-13  Score=110.55  Aligned_cols=102  Identities=28%  Similarity=0.457  Sum_probs=92.4

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      .||++++|.|+++++||+||||.|+...+.+..+.++++|+|++|+.+..+..-.....+.+...+.+.|++++..+.|.
T Consensus       140 lsy~~ssp~ls~r~rfp~~frt~PS~~~~np~rl~l~~~~~w~rvgt~~q~e~~f~~~~~dl~~~~~~~~ieiv~~qsf~  219 (865)
T KOG1055|consen  140 LSYGASSPALSNRKRFPTFFRTHPSANAHNPTRIKLLKKFGWKRVATLQQTEEVFSSTLNDLEARLKEAGIEIVFRQSFS  219 (865)
T ss_pred             ecccCCCccccchhhcchhhhcCCccccCCcceeeechhcCcceeeeeeeehhhhcchHHHHHHhhhccccEEEEeeccc
Confidence            38999999999999999999999999999999999999999999999999998888899999999999999999998886


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .++        ...+.+++ .+++|+|+-++
T Consensus       220 ~dp--------~~~vk~l~-~~D~RiI~g~f  241 (865)
T KOG1055|consen  220 SDP--------ADSVKNLK-RQDARIIVGLF  241 (865)
T ss_pred             cCH--------HHHHhhcc-ccchhheeccc
Confidence            653        45778898 78999998654

>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family

Probab=99.30  E-value=4.4e-11  Score=95.67  Aligned_cols=95  Identities=11%  Similarity=0.253  Sum_probs=67.7

Q ss_pred             CCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHH
Q psy12591         13 KQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYD   92 (144)
Q Consensus        13 ~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~   92 (144)
                      +..||+++|  |+ ..++.++++++++|+|++++++ .+++||....+.+.+.++++|+||.... +......+-...++
T Consensus       112 ~~~y~~~~r--p~-~~~~~ai~~li~~f~W~~v~i~-~d~~~~~~~l~~l~~~~~~~~i~I~~~~-~~~~~~~~~~~~~~  186 (400)
T cd06391         112 NDDYTLSVR--PP-VYLNDVILRVVTEYAWQKFIIF-YDTDYDIRGIQEFLDKVSQQGMDVALQK-VENNINKMITGLFR  186 (400)
T ss_pred             cccceEEec--Ch-HHHHHHHHHHHHHcCCcEEEEE-EeCCccHHHHHHHHHHHHHcCCeEEEEe-cCcchhhhhHHHHH
Confidence            556888988  43 6788999999999999998875 5677888999999999999999999743 22211000012233


Q ss_pred             H-HHHHHhc-CCCceEEEEeeE
Q psy12591         93 D-IVLKLLT-KPRARGLFKRLK  112 (144)
Q Consensus        93 ~-~l~~lk~-~~~arvii~~~~  112 (144)
                      . .+++|++ .+.+|+||+++.
T Consensus       187 ~~~~~~l~~~~~~~rviVl~~~  208 (400)
T cd06391         187 TMRIEELNRYRDTLRRAILVMN  208 (400)
T ss_pred             HHHHHHHHhhcccccEEEEECC
Confidence            2 4556652 166899999875

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a

>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=99.29  E-value=5.3e-11  Score=92.45  Aligned_cols=102  Identities=13%  Similarity=0.180  Sum_probs=81.7

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHH-HHHHHhC-CCcEEEEEEEeCC-cchHHHHHHHHHhhhCceEEEEEec
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAM-VEIVKKL-GWSYVSIIYEESN-YGVKAFEELEVLLAKYSICIAIKEK   78 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~-~~ll~~f-~W~~Vaii~~~~~-~g~~~~~~~~~~l~~~Gi~V~~~~~   78 (144)
                      +++++++.+..  .+||+||+.+++..+...+ ..+++++ +|+++++++.+++ ||....+.+++.+++.|++|+....
T Consensus        96 ~~~~~~~~~~~--~~~~~fr~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~  173 (344)
T cd06348          96 GPSNTAKGIPE--IGPYVFRVSAPEAVVAPAAIAAALKLNPGIKRVAVFYAQDDAFSVSETEIFQKALRDQGLNLVTVQT  173 (344)
T ss_pred             eccCCCCCcCC--CCCeEEEccCcHHHHHHHHHHHHHHHhcCCeEEEEEEeCCchHHHHHHHHHHHHHHHcCCEEEEEEe
Confidence            44444454433  4789999988776655444 4567788 9999999997655 9999999999999999999998888


Q ss_pred             ccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         79 LVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      ++.+     +.||+.++.+|| .+++++|++..
T Consensus       174 ~~~~-----~~d~~~~v~~i~-~~~~d~vi~~~  200 (344)
T cd06348         174 FQTG-----DTDFQAQITAVL-NSKPDLIVISA  200 (344)
T ss_pred             eCCC-----CCCHHHHHHHHH-hcCCCEEEECC
Confidence            8765     568999999999 78899988764

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor

Probab=99.22  E-value=1.5e-10  Score=91.49  Aligned_cols=90  Identities=13%  Similarity=0.303  Sum_probs=73.7

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEe--cccCCCCCcchhhHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKE--KLVKDSGVAEETAYD   92 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~--~~~~~~~~~~~~~~~   92 (144)
                      .|++.+++.|+   ...++++++++|+|++++++|+ ++||....+.+.+.+++.|+.|+..+  .+....   .+.||+
T Consensus        94 ~~~f~~~~~p~---~~~ai~d~i~~~~wk~vailYd-sd~gl~~lq~l~~~~~~~g~~V~~~~~~~i~~~~---~~~d~~  166 (370)
T cd06389          94 THPFVIQMRPD---LKGALLSLIEYYQWDKFAYLYD-SDRGLSTLQAVLDSAAEKKWQVTAINVGNINNDR---KDEAYR  166 (370)
T ss_pred             CCceEEEecch---hhhHHHHHHHhcCCcEEEEEec-CchHHHHHHHHHHhhccCCceEEEEEeecCCCcc---chHHHH
Confidence            57888888888   5789999999999999999997 56999999999999999997776443  222111   256999


Q ss_pred             HHHHHHhcCCCceEEEEeeE
Q psy12591         93 DIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        93 ~~l~~lk~~~~arvii~~~~  112 (144)
                      .+|++|| ..++++||+.+.
T Consensus       167 ~~L~~ik-~~~~~~Iil~~~  185 (370)
T cd06389         167 SLFQDLE-NKKERRVILDCE  185 (370)
T ss_pred             HHHHHhc-cccceEEEEECC
Confidence            9999999 789999998653

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06359 PBP1_Nba_like Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway

Probab=99.16  E-value=3.7e-10  Score=87.53  Aligned_cols=101  Identities=16%  Similarity=0.134  Sum_probs=80.8

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      +++++.+.+.+...+||+||+.|++..++.++.+++...+|+++++++.+++||+...+.+++.++   ..++....++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~g~~~vail~~~~~~g~~~~~~~~~~~~---~~v~~~~~~~~  170 (333)
T cd06359          94 STNAGPSQLAGKQCSPYFFSTSWQNDQVHEAMGKYAQDKGYKRVFLIAPNYQAGKDALAGFKRTFK---GEVVGEVYTKL  170 (333)
T ss_pred             ecCCCccccccccCCCcEEEeeCChHhhHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHhC---ceeeeeecCCC
Confidence            344444556554458999999999999999999999888999999999999999999998888874   34555554543


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +     ..||+.++.+|+ ..++++|+++.
T Consensus       171 ~-----~~d~~~~i~~l~-~~~pd~v~~~~  194 (333)
T cd06359         171 G-----QLDFSAELAQIR-AAKPDAVFVFL  194 (333)
T ss_pred             C-----CcchHHHHHHHH-hCCCCEEEEEc
Confidence            3     578999999999 68899998753

This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.

>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes

Probab=99.14  E-value=9.3e-10  Score=84.62  Aligned_cols=101  Identities=16%  Similarity=0.125  Sum_probs=81.8

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      ++++..+.+++...+|++||+.|++..++..+++++...+|+++++++.++.||....+.+.+.++  | .+.....++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~v~il~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~  170 (333)
T cd06332          94 SPNAGPSDLAGKLCSPNFFRTSWQNDQVHEAMGKYAADKGYKKVVIIAPDYAAGKDAVAGFKRTFK--G-EVVEEVYTPL  170 (333)
T ss_pred             ecCCCCccccccCCCCcEEEeeCChHHhHHHHHHHHHHhCCceEEEEecCcchhHHHHHHHHHhhc--E-EEeeEEecCC
Confidence            445555666666558999999999999999999999888999999999999999999999999887  3 5555555544


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +     ..|+..++++|+ ..++++|+++.
T Consensus       171 ~-----~~d~~~~i~~l~-~~~~d~i~~~~  194 (333)
T cd06332         171 G-----QLDFSAELAQIR-AAKPDAVFVFL  194 (333)
T ss_pred             C-----CcchHHHHHHHH-hcCCCEEEEec
Confidence            3     457889999998 67889888764

This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.

>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily

Probab=99.13  E-value=1.3e-09  Score=81.52  Aligned_cols=103  Identities=25%  Similarity=0.321  Sum_probs=83.9

Q ss_pred             ccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCC-CcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          3 FWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLG-WSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         3 ~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~-W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      +.+..+.+.+ ..+|++|++.|++..++..++++++..+ |+++++++.+++++....+.+.+.+++.|+++.....++.
T Consensus        96 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~  174 (298)
T cd06268          96 PGATSPALTG-KGNPYVFRTAPSDAQQAAALADYLAEKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPP  174 (298)
T ss_pred             cCCCCccccc-CCCceEEEcccCcHHHHHHHHHHHHHhcCCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCC
Confidence            3444444443 2489999999999999999999998887 9999999999899999999999999999999887766654


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      +     ..++...+++|+ ..++++|++...
T Consensus       175 ~-----~~~~~~~~~~l~-~~~~~~vi~~~~  199 (298)
T cd06268         175 G-----ATDFSPLIAKLK-AAGPDAVFLAGY  199 (298)
T ss_pred             C-----CccHHHHHHHHH-hcCCCEEEEccc
Confidence            4     357889999998 567788877653

Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC

>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system

Probab=99.13  E-value=2.5e-10  Score=89.78  Aligned_cols=107  Identities=9%  Similarity=0.067  Sum_probs=84.9

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      +++++++.++.+.-+||+||+.|++..++.++++++..-+.+++++|+.|++||....+.+++.+++.|++|+..+.++.
T Consensus        88 ~~~a~~~~lt~~~c~~~~Fr~~~~~~~~~~ala~~~~~~g~kkvaii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~  167 (347)
T TIGR03863        88 NAGAPDDALRGADCRANLLHTLPSRAMLADALAQYLAAKRWRRILLIQGPLPADALYADAFRRSAKRFGAKIVAERPFTF  167 (347)
T ss_pred             eCCCCChHHhCCCCCCCEEEecCChHhHHHHHHHHHHHcCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEEeEEecc
Confidence            45677777887656799999999999999999998876799999999999999999999999999999999999888876


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      +.+ ....+++.....++ .+++++|++.
T Consensus       168 ~~~-~~~~d~s~~~~~~~-~s~pDvv~~~  194 (347)
T TIGR03863       168 SGD-PRRTDQSEVPLFTQ-GADYDVVVVA  194 (347)
T ss_pred             CCc-hhhhhcccCceeec-CCCCCEEEEe
Confidence            531 11234543222234 4678888763

Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.

>cd06339 PBP1_YraM_LppC_lipoprotein_like Periplasmic binding component of lipoprotein LppC, an immunodominant antigen

Probab=99.13  E-value=6.4e-10  Score=86.66  Aligned_cols=81  Identities=12%  Similarity=0.095  Sum_probs=74.7

Q ss_pred             CCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH
Q psy12591         16 FEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV   95 (144)
Q Consensus        16 ~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l   95 (144)
                      .|++||+.+++..++.++++++...|++++++++.+++||....+.|.+.+++.|++|+..+.++.+     ..||+.++
T Consensus        98 ~~~~f~~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~f~~~~~~~G~~vv~~~~~~~~-----~~d~~~~i  172 (336)
T cd06339          98 GPNLFYFGLSPEDEARRAAEYARSQGKRRPLVLAPDGAYGQRVADAFRQAWQQLGGTVVAIESYDPS-----PTDLSDAI  172 (336)
T ss_pred             CCCEEEecCChHHHHHHHHHHHHhcCccceEEEecCChHHHHHHHHHHHHHHHcCCceeeeEecCCC-----HHHHHHHH
Confidence            6899999999999999999998777999999999999999999999999999999999998888765     67999999


Q ss_pred             HHHhcCC
Q psy12591         96 LKLLTKP  102 (144)
Q Consensus        96 ~~lk~~~  102 (144)
                      ++|+ ..
T Consensus       173 ~~i~-~~  178 (336)
T cd06339         173 RRLL-GV  178 (336)
T ss_pred             HHHh-cc
Confidence            9999 45

This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).

>cd06333 PBP1_ABC-type_HAAT_like Type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids

Probab=99.11  E-value=1.5e-09  Score=83.12  Aligned_cols=91  Identities=23%  Similarity=0.314  Sum_probs=79.1

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI   94 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~   94 (144)
                      ..+++||+.+++..++..+++++...||++|++++.++.+|....+.+.+.+++.|+++.....++.+     +.++...
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~vail~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~-----~~d~~~~  180 (312)
T cd06333         106 KRKWVFKTPQNDRLMAEAILADMKKRGVKTVAFIGFSDAYGESGLKELKALAPKYGIEVVADERYGRT-----DTSVTAQ  180 (312)
T ss_pred             CCCcEEEcCCCcHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEeeCCC-----CcCHHHH
Confidence            36899999999999999999999999999999999988899999999999999999999877777654     3578889


Q ss_pred             HHHHhcCCCceEEEEee
Q psy12591         95 VLKLLTKPRARGLFKRL  111 (144)
Q Consensus        95 l~~lk~~~~arvii~~~  111 (144)
                      +.+++ ..++++|++..
T Consensus       181 ~~~l~-~~~pdaIi~~~  196 (312)
T cd06333         181 LLKIR-AARPDAVLIWG  196 (312)
T ss_pred             HHHHH-hCCCCEEEEec
Confidence            99998 56788888764

This subgroup includes the type I periplasmic binding component of ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in uptake of amino acids. Members of this subgroup are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.

>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)

Probab=99.11  E-value=1.3e-09  Score=85.15  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=81.0

Q ss_pred             CCCceEEecCCchHHHHHHHHHHH-hCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVK-KLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD   93 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~-~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~   93 (144)
                      ..|++||+.+.+..++..+++++. ..+++++++++.|++||....+.+++.+++.|+.|+..+.++.+     ..||+.
T Consensus       105 ~~~~~f~~~~~~~~~~~~~~~~~~~~~g~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-----~~D~~~  179 (348)
T cd06355         105 QSPNVFYTGAAPNQQIIPAVDWLMSNKGGKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLG-----HTDFQS  179 (348)
T ss_pred             CCCCEEEeCCChHHhHHHHHHHHHhccCCCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCC-----hhhHHH
Confidence            478999999999999998989765 46899999999999999999999999999999999998888765     579999


Q ss_pred             HHHHHhcCCCceEEEEee
Q psy12591         94 IVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        94 ~l~~lk~~~~arvii~~~  111 (144)
                      ++++|+ ..++++|++..
T Consensus       180 ~v~~l~-~~~pd~v~~~~  196 (348)
T cd06355         180 IINKIK-AAKPDVVVSTV  196 (348)
T ss_pred             HHHHHH-HhCCCEEEEec
Confidence            999999 68899888753

This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.

>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF)

Probab=99.09  E-value=1.2e-09  Score=84.68  Aligned_cols=91  Identities=10%  Similarity=0.023  Sum_probs=80.8

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI   94 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~   94 (144)
                      ..|++||+.|++..++.++++++...+|++|++++.|+.||....+.+.+.+++.|.+|+....++.+     ..||+.+
T Consensus       105 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~il~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-----~~d~~~~  179 (333)
T cd06331         105 CSPNVFYTGATPNQQLLPLIPYLMEKYGKRFYLIGSDYVWPRESNRIARALLEELGGEVVGEEYLPLG-----TSDFGSV  179 (333)
T ss_pred             CCCCeEEccCChHHhHHHHHHHHHHhcCCeEEEECCCchhHHHHHHHHHHHHHHcCCEEEEEEEecCC-----cccHHHH
Confidence            36899999999999999999977555599999999999999999999999999999999988888865     5789999


Q ss_pred             HHHHhcCCCceEEEEee
Q psy12591         95 VLKLLTKPRARGLFKRL  111 (144)
Q Consensus        95 l~~lk~~~~arvii~~~  111 (144)
                      +.+++ ..++++|+++.
T Consensus       180 v~~~~-~~~~d~v~~~~  195 (333)
T cd06331         180 IEKIK-AAGPDVVLSTL  195 (333)
T ss_pred             HHHHH-HcCCCEEEEec
Confidence            99999 68899888764

This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t

>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins

Probab=99.07  E-value=1.9e-09  Score=83.16  Aligned_cols=91  Identities=14%  Similarity=0.200  Sum_probs=80.1

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI   94 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~   94 (144)
                      ..|++||+.+++..++..+++++...||+++++++.++.++....+.+++.+++.|+++.....++.+     ..++..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~-----~~d~~~~  183 (336)
T cd06326         109 PDRNVFNVRASYADEIAAIVRHLVTLGLKRIAVFYQDDAFGKDGLAGVEKALAARGLKPVATASYERN-----TADVAAA  183 (336)
T ss_pred             CCCceEEeCCChHHHHHHHHHHHHHhCCceEEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEeecCC-----cccHHHH
Confidence            37899999999999999999999899999999999988899999999999999999998777667654     4689999


Q ss_pred             HHHHhcCCCceEEEEee
Q psy12591         95 VLKLLTKPRARGLFKRL  111 (144)
Q Consensus        95 l~~lk~~~~arvii~~~  111 (144)
                      +.+|+ .+++++|++..
T Consensus       184 ~~~l~-~~~~dav~~~~  199 (336)
T cd06326         184 VAQLA-AARPQAVIMVG  199 (336)
T ss_pred             HHHHH-hcCCCEEEEEc
Confidence            99999 56788888764

The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.

>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor

Probab=99.06  E-value=1.3e-09  Score=85.25  Aligned_cols=84  Identities=10%  Similarity=0.136  Sum_probs=62.8

Q ss_pred             EEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh
Q psy12591         20 TRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL   99 (144)
Q Consensus        20 fRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk   99 (144)
                      .++.|++..|++|+++++++|+|+++.+||+++++...+.+.++.. ...+..+...    ...   .+.||+.+|++||
T Consensus       112 i~l~P~~~~~~~Ai~dli~~~~W~~v~~iYe~d~~l~~L~~~l~~~-~~~~~~i~~~----~~~---~~~d~~~~L~~ik  183 (333)
T cd06394         112 VNLHPSNEDISVAVAGILNSFNYPTASLICAKAECLLRLEELLRQF-LISKETLSVR----MLD---DSRDPTPLLKEIR  183 (333)
T ss_pred             EEecCCHHHHHHHHHHHHHhcCCCEEEEEEeCcHHHHHHHHHHHhh-cccCCceeeE----Ecc---CcccHHHHHHHHH
Confidence            7888999999999999999999999999999999855554444432 1222222211    111   2568999999999


Q ss_pred             cCCCceEEEEeeE
Q psy12591        100 TKPRARGLFKRLK  112 (144)
Q Consensus       100 ~~~~arvii~~~~  112 (144)
                       ..++|+||+.++
T Consensus       184 -~~~~~~iVv~~~  195 (333)
T cd06394         184 -DDKTATIIIDAN  195 (333)
T ss_pred             -hcCCCEEEEECC
Confidence             688999998764

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act

>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides

Probab=99.04  E-value=3.4e-09  Score=82.14  Aligned_cols=90  Identities=9%  Similarity=0.039  Sum_probs=79.0

Q ss_pred             CCCceEEecCCchHHHHHHHHHH-HhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIV-KKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD   93 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll-~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~   93 (144)
                      ..|++||+.+++..++..++..+ +..+|++|++++.++.||+...+.+++.+++.|+.|+....++.+     ..||+.
T Consensus       104 ~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~-----~~d~~~  178 (333)
T cd06358         104 CNPGVFLTGETPEQQLAPAIPWLAEEKGARRWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLG-----TTDFTS  178 (333)
T ss_pred             CCCCEEEcCCCcHHHHHHHHHHHHHhcCCCeEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCC-----hHHHHH
Confidence            46899999999998887777765 668999999999999999999999999999999999988888765     579999


Q ss_pred             HHHHHhcCCCceEEEEe
Q psy12591         94 IVLKLLTKPRARGLFKR  110 (144)
Q Consensus        94 ~l~~lk~~~~arvii~~  110 (144)
                      ++++|| ..++++|++.
T Consensus       179 ~v~~l~-~~~pd~v~~~  194 (333)
T cd06358         179 VLERIA-ASGADAVLST  194 (333)
T ss_pred             HHHHHH-HcCCCEEEEe
Confidence            999999 6788888764

This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int

>TIGR03407 urea_ABC_UrtA urea ABC transporter, urea binding protein

Probab=99.03  E-value=2.6e-09  Score=83.85  Aligned_cols=90  Identities=11%  Similarity=0.061  Sum_probs=80.0

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHh-CCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKK-LGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD   93 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~-f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~   93 (144)
                      ..|++||+.+++..++..+++++.. .|.+++++++.|++||....+.+++.+++.|+.|+....++.+     ..||+.
T Consensus       106 ~~~~~F~~~~~~~~~~~~~~~~~~~~~g~k~v~~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-----~~D~s~  180 (359)
T TIGR03407       106 CSPNIFYTGAAPNQQIIPAVDYLLSKKGAKRFFLLGSDYVFPRTANKIIKAYLKSLGGTVVGEDYTPLG-----HTDFQT  180 (359)
T ss_pred             cCCCEEEcCCChHHHHHHHHHHHHhccCCceEEEecCccHHHHHHHHHHHHHHHHcCCEEEeeEEecCC-----hHhHHH
Confidence            4789999999999999999897755 6999999999999999999999999999999999988888765     579999


Q ss_pred             HHHHHhcCCCceEEEEe
Q psy12591         94 IVLKLLTKPRARGLFKR  110 (144)
Q Consensus        94 ~l~~lk~~~~arvii~~  110 (144)
                      ++++|+ ..++++|++.
T Consensus       181 ~v~~l~-~~~pDav~~~  196 (359)
T TIGR03407       181 IINKIK-AFKPDVVFNT  196 (359)
T ss_pred             HHHHHH-HhCCCEEEEe
Confidence            999999 6888888754

Members of this protein family are ABC transporter substrate-binding proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. Members of this protein family tend to have the twin-arginine signal for Sec-independent transport across the plasma membrane.

>KOG4440|consensus

Probab=99.02  E-value=9.4e-10  Score=90.48  Aligned_cols=103  Identities=17%  Similarity=0.209  Sum_probs=90.3

Q ss_pred             cCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCC
Q psy12591          4 WSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDS   83 (144)
Q Consensus         4 ~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~   83 (144)
                      ...+..++++..|+.|+|+.|+..+|+...+.+|.+|.|++|.++.++|.-|+.....++..+++..-++.....|.++ 
T Consensus       131 ~~Rda~fSdKnIh~sFlRtvpPyshqa~VwleMl~~~~y~~vi~l~s~d~~gra~~~r~qt~~e~~~~~~e~v~~f~p~-  209 (993)
T KOG4440|consen  131 TTRDAIFSDKNIHLSFLRTVPPYSHQASVWLEMLRVYSYNHVILLVSDDHEGRAAQKRLQTLLEERESKAEKVLQFDPG-  209 (993)
T ss_pred             eehhhhhccCceeeeEeecCCCccchhHHHHHHHHHhhcceEEEEEcccccchhHHhHHHHHHHHHhhhhhhheecCcc-
Confidence            3456779999999999999999999999999999999999999999999999888888888888777677666677766 


Q ss_pred             CCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         84 GVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        84 ~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                          .+++++.|...| ...+||+++.++
T Consensus       210 ----~~~~t~~l~~~k-~~~~rv~~~~as  233 (993)
T KOG4440|consen  210 ----TKNVTALLMEAK-ELEARVIILSAS  233 (993)
T ss_pred             ----cchHHHHHhhhh-hhhheeEEeecc
Confidence                468999999999 789999999874

>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type

Probab=98.99  E-value=6.1e-09  Score=82.60  Aligned_cols=89  Identities=13%  Similarity=0.157  Sum_probs=79.0

Q ss_pred             CCceEEecCCchHHHHHHHHHHH-hCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591         16 FEYFTRTIPSDHHQVKAMVEIVK-KLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI   94 (144)
Q Consensus        16 ~p~ffRt~p~d~~~~~a~~~ll~-~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~   94 (144)
                      .||+||+.|++..++.++++++. ..+ +++++++.|++||+...+.+++.+++.|+.|+..+.++.+     ..||+.+
T Consensus       107 ~~~~Fr~~~~~~~~~~~~~~~~~~~~g-~~va~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g-----~~Df~~~  180 (374)
T TIGR03669       107 DEYTFAVGATARQQLGTVVPYMVEEYG-KKIYTIAADYNFGQLSADWVRVIAKENGAEVVGEEFIPLS-----VSQFSST  180 (374)
T ss_pred             CCCEEEcCCChHHHHHHHHHHHHHcCC-CeEEEEcCCcHHHHHHHHHHHHHHHHcCCeEEeEEecCCC-----cchHHHH
Confidence            58999999999999999999875 456 5799999999999999999999999999999988888766     5799999


Q ss_pred             HHHHhcCCCceEEEEee
Q psy12591         95 VLKLLTKPRARGLFKRL  111 (144)
Q Consensus        95 l~~lk~~~~arvii~~~  111 (144)
                      +++|| ..++++|+++.
T Consensus       181 l~~i~-~~~pD~V~~~~  196 (374)
T TIGR03669       181 IQNIQ-KADPDFVMSML  196 (374)
T ss_pred             HHHHH-HcCCCEEEEcC
Confidence            99999 68899998753

Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.

>cd06337 PBP1_ABC_ligand_binding_like_4 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=98.98  E-value=5.3e-09  Score=82.03  Aligned_cols=91  Identities=12%  Similarity=0.076  Sum_probs=77.9

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCC-CcEEEEEEEeCCcchHHHHHHH---HHhhhCceEEEEEecccCCCCCcchhh
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLG-WSYVSIIYEESNYGVKAFEELE---VLLAKYSICIAIKEKLVKDSGVAEETA   90 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~-W~~Vaii~~~~~~g~~~~~~~~---~~l~~~Gi~V~~~~~~~~~~~~~~~~~   90 (144)
                      .++|+||..+++..+..+++.+++..+ ++++++++.++.||....+.+.   +.+++.|+.|+..+.++.+     ..|
T Consensus       117 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~k~v~ii~~~~~~g~~~~~~~~~~~~~~~~~G~~vv~~~~~~~~-----~~D  191 (357)
T cd06337         117 GFKWTYHFFWGAEDVVATYVGMWKQLETNKKVGILYPNDPDGNAFADPVIGLPAALADAGYKLVDPGRFEPG-----TDD  191 (357)
T ss_pred             CCceeEEecCCHHHHHHHHHHHHHhCCCCceEEEEeecCchhHHHHHhhhcccHHHHhCCcEEecccccCCC-----CCc
Confidence            378999999988888888888888777 9999999999999998777665   5667799999988888876     568


Q ss_pred             HHHHHHHHhcCCCceEEEEee
Q psy12591         91 YDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        91 ~~~~l~~lk~~~~arvii~~~  111 (144)
                      |+.++++|| .+++++|++..
T Consensus       192 ~~~~v~~ik-~a~pD~v~~~~  211 (357)
T cd06337         192 FSSQINAFK-REGVDIVTGFA  211 (357)
T ss_pred             HHHHHHHHH-hcCCCEEEeCC
Confidence            999999999 78899988653

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor

Probab=98.98  E-value=8e-09  Score=81.86  Aligned_cols=86  Identities=7%  Similarity=0.102  Sum_probs=65.2

Q ss_pred             ceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHH
Q psy12591         18 YFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLK   97 (144)
Q Consensus        18 ~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~   97 (144)
                      +.||+...+. +..++++++++|+|++++++|+++ +|....+.|.+.+++.|+.|+..+....+     +.||+.+|++
T Consensus       101 ~~f~i~~~p~-~~~a~~~~i~~~~wk~vaiiYd~~-~~~~~lq~l~~~~~~~g~~v~~~~~~~~~-----~~d~~~~L~~  173 (371)
T cd06388         101 SQFVLQLRPS-LRGALLSLLDHYEWNRFVFLYDTD-RGYSILQAIMEKAGQNGWQVSAICVENFN-----DASYRRLLED  173 (371)
T ss_pred             CceEEEeChh-hhhHHHHHHHhcCceEEEEEecCC-ccHHHHHHHHHhhHhcCCeeeeEEeccCC-----cHHHHHHHHH
Confidence            3344444443 457788899999999999999633 44467889999999999998875544332     4599999999


Q ss_pred             HhcCCCceEEEEee
Q psy12591         98 LLTKPRARGLFKRL  111 (144)
Q Consensus        98 lk~~~~arvii~~~  111 (144)
                      || ..+.++||+.+
T Consensus       174 ik-~~~~~~iil~~  186 (371)
T cd06388         174 LD-RRQEKKFVIDC  186 (371)
T ss_pred             hc-ccccEEEEEEC
Confidence            99 68899888765

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF)

Probab=98.97  E-value=5.7e-09  Score=81.10  Aligned_cols=90  Identities=13%  Similarity=0.051  Sum_probs=79.0

Q ss_pred             CCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH
Q psy12591         16 FEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV   95 (144)
Q Consensus        16 ~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l   95 (144)
                      .|++||+.+++..++.++++++...+-+++++++.|++||......+.+.+++.|+.++....++.+     ..||+.++
T Consensus       106 ~~~~F~~~~~~~~~~~~~~~~~~~~~~~~vail~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-----~~d~~~~v  180 (334)
T cd06356         106 DRNTFCTGATPAQQFSTLVPYMMEKYGKKVYTIAADYNFGQISAEWVRKIVEENGGEVVGEEFIPLD-----VSDFGSTI  180 (334)
T ss_pred             cCCEEEeCCCcHHHHHHHHHHHHHccCCeEEEECCCchhhHHHHHHHHHHHHHcCCEEEeeeecCCC-----chhHHHHH
Confidence            5799999999999999999987654337899999999999999999999999999999988888776     57999999


Q ss_pred             HHHhcCCCceEEEEee
Q psy12591         96 LKLLTKPRARGLFKRL  111 (144)
Q Consensus        96 ~~lk~~~~arvii~~~  111 (144)
                      ++|+ ..++++|++..
T Consensus       181 ~~l~-~~~pd~v~~~~  195 (334)
T cd06356         181 QKIQ-AAKPDFVMSIL  195 (334)
T ss_pred             HHHH-hcCCCEEEEec
Confidence            9999 68899888643

This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.

>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A

Probab=98.96  E-value=6.7e-09  Score=80.15  Aligned_cols=92  Identities=23%  Similarity=0.248  Sum_probs=79.2

Q ss_pred             CCCCceEEecCCchHHHHHHHHHH-HhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHH
Q psy12591         14 QRFEYFTRTIPSDHHQVKAMVEIV-KKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYD   92 (144)
Q Consensus        14 ~~~p~ffRt~p~d~~~~~a~~~ll-~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~   92 (144)
                      ..+|++||..|++..++.++++.+ ++++.+++++++.++.||....+.+.+.+++.|+.++....++.+     ..|++
T Consensus       106 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~-----~~d~~  180 (343)
T PF13458_consen  106 PDSPNVFRLSPSDSQQAAALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYPPG-----DTDFS  180 (343)
T ss_dssp             TTHTTEEESS--HHHHHHHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE-TT-----SSHHH
T ss_pred             CCCCcEEEEeccccHHHHHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHHHHHhhcCceeccceecccc-----cccch
Confidence            458999999999999999999975 568999999999999999999999999999999999888888866     47999


Q ss_pred             HHHHHHhcCCCceEEEEee
Q psy12591         93 DIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        93 ~~l~~lk~~~~arvii~~~  111 (144)
                      .++++|+ ..++++|+++.
T Consensus       181 ~~~~~l~-~~~~d~v~~~~  198 (343)
T PF13458_consen  181 ALVQQLK-SAGPDVVVLAG  198 (343)
T ss_dssp             HHHHHHH-HTTTSEEEEES
T ss_pred             HHHHHHh-hcCCCEEEEec
Confidence            9999999 57888877654

...

>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor

Probab=98.89  E-value=2.7e-08  Score=78.98  Aligned_cols=89  Identities=7%  Similarity=0.207  Sum_probs=72.5

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI   94 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~   94 (144)
                      ..++.+.+.|+   ++.|+++++++|+|+++.++| ++++|....+.+.+.+...+..|......+...    ..+++.+
T Consensus       100 ~~~~~l~l~P~---l~~Ai~diI~~~~Wr~~~~iY-d~d~gl~~Lq~L~~~~~~~~~~V~~~~v~~~~~----~~~~~~~  171 (372)
T cd06387         100 DVQFVIQMRPA---LKGAILSLLAHYKWEKFVYLY-DTERGFSILQAIMEAAVQNNWQVTARSVGNIKD----VQEFRRI  171 (372)
T ss_pred             CCceEEEEChh---HHHHHHHHHHhcCCCEEEEEe-cCchhHHHHHHHHHhhccCCceEEEEEeccCCc----hHHHHHH
Confidence            34677788888   789999999999999999999 668898899999999999998887664333222    4689999


Q ss_pred             HHHHhcCCCceEEEEeeE
Q psy12591         95 VLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        95 l~~lk~~~~arvii~~~~  112 (144)
                      +++|+ +.+.|+||+.++
T Consensus       172 l~el~-~~~~r~iIld~s  188 (372)
T cd06387         172 IEEMD-RRQEKRYLIDCE  188 (372)
T ss_pred             HHHhc-cccceEEEEECC
Confidence            99999 677888888764

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family

Probab=98.79  E-value=7.5e-08  Score=77.17  Aligned_cols=91  Identities=12%  Similarity=0.271  Sum_probs=63.5

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCC--C--cchhh
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSG--V--AEETA   90 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~--~--~~~~~   90 (144)
                      +||++.|+  + ..+..|+++++.+|+|+++.++| |++||....+.+.+.+.+.+..|.+.. +..+..  .  .-...
T Consensus       114 ~~~~~lrp--~-~~~~~Ai~dlV~~~~W~~v~~iY-D~d~gl~~lq~L~~~~~~~~~~I~~~~-v~~~~~~~~~~~l~~~  188 (400)
T cd06392         114 EYTLAARP--P-VRLNDVMLKLVTELRWQKFIVFY-DSEYDIRGLQSFLDQASRLGLDVSLQK-VDRNISRVFTNLFTTM  188 (400)
T ss_pred             ceeEEecC--c-hHHHHHHHHHHHhCCCcEEEEEE-ECcccHHHHHHHHHHHhhcCceEEEEE-cccCcchhhhhHHHHH
Confidence            46666665  3 46778999999999999999999 799999999999999999998888654 221100  0  00223


Q ss_pred             HHHHHHHHhcCCCceEEEEeeE
Q psy12591         91 YDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        91 ~~~~l~~lk~~~~arvii~~~~  112 (144)
                      ..+.|.+++ ... |+||+.++
T Consensus       189 ~~~~L~~~~-~~~-r~iVv~~s  208 (400)
T cd06392         189 KTEELNRYR-DTL-RRAILLLS  208 (400)
T ss_pred             HHhhhhhcc-ccc-eEEEEEcC
Confidence            344555565 234 67766653

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel

>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=98.68  E-value=2.2e-07  Score=71.99  Aligned_cols=90  Identities=10%  Similarity=-0.064  Sum_probs=76.8

Q ss_pred             CCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC-cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591         16 FEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN-YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI   94 (144)
Q Consensus        16 ~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~-~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~   94 (144)
                      .|++||+.+++..++..+++++..-+.+++++++.++. ||......+++.+++.|+.++....++.+     ..|+..+
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~-----~~d~~~~  180 (341)
T cd06341         106 SPNSFPFSGGTPASLTTWGDFAKDQGGTRAVALVTALSAAVSAAAALLARSLAAAGVSVAGIVVITAT-----APDPTPQ  180 (341)
T ss_pred             CCCeEEecCCCcchhHHHHHHHHHcCCcEEEEEEeCCcHHHHHHHHHHHHHHHHcCCccccccccCCC-----CCCHHHH
Confidence            57889999999999999999988888999999987665 99999999999999999998877666654     4689999


Q ss_pred             HHHHhcCCCceEEEEee
Q psy12591         95 VLKLLTKPRARGLFKRL  111 (144)
Q Consensus        95 l~~lk~~~~arvii~~~  111 (144)
                      +++|+ ..++++|++..
T Consensus       181 ~~~i~-~~~pdaV~~~~  196 (341)
T cd06341         181 AQQAA-AAGADAIITVL  196 (341)
T ss_pred             HHHHH-hcCCCEEEEec
Confidence            99999 57899887764

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06357 PBP1_AmiC Periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family

Probab=98.64  E-value=6.1e-07  Score=70.53  Aligned_cols=91  Identities=11%  Similarity=0.060  Sum_probs=74.7

Q ss_pred             CceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHH
Q psy12591         17 EYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVL   96 (144)
Q Consensus        17 p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~   96 (144)
                      |++|++.++...+..++++++..-+-+++++++.|+.||+...+.+.+.+++.|+.++....++.++   .+.||+.+++
T Consensus       107 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~---~~~d~s~~v~  183 (360)
T cd06357         107 PNVIYTGAAPNQNSVPLADYLLRHYGKRVFLVGSNYIYPYESNRIMRDLLEQRGGEVLGERYLPLGA---SDEDFARIVE  183 (360)
T ss_pred             CCEEEeCCCcHHHHHHHHHHHHhcCCcEEEEECCCCcchHHHHHHHHHHHHHcCCEEEEEEEecCCC---chhhHHHHHH
Confidence            6788888887777888888775434489999999999999999999999999999998765555443   2679999999


Q ss_pred             HHhcCCCceEEEEee
Q psy12591         97 KLLTKPRARGLFKRL  111 (144)
Q Consensus        97 ~lk~~~~arvii~~~  111 (144)
                      +|| ..++++|++..
T Consensus       184 ~l~-~~~pd~V~~~~  197 (360)
T cd06357         184 EIR-EAQPDFIFSTL  197 (360)
T ss_pred             HHH-HcCCCEEEEeC
Confidence            999 68899888653

This group includes the periplasmic binding domain of amidase (AmiC) that belongs to the type I periplasmic binding fold protein family. AmiC controls expression of the amidase operon by the ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon are induced.

>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2

Probab=98.59  E-value=9.1e-07  Score=70.05  Aligned_cols=57  Identities=16%  Similarity=0.320  Sum_probs=43.8

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEE
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAI   75 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~   75 (144)
                      .|++++|  |++ .++.++.+++++|+|++|+++|++++++ ...+.+.+.+++.|+.+..
T Consensus       114 ~~~f~~r--p~~-~~~~ai~~lv~~~~wkkvavly~~d~g~-~~l~~~~~~~~~~g~~v~~  170 (363)
T cd06381         114 QYTLALR--PPV-RLNDVMLRLVTEWRWQKFVYFYDNDYDI-RGLQEFLDQLSRQGIDVLL  170 (363)
T ss_pred             eeEEEEe--ccH-HHHHHHHHHHHhCCCeEEEEEEECCchH-HHHHHHHHHHHhcCceEEE
Confidence            3555544  664 6889999999999999999999987754 4447777888899986653

This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G

>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family

Probab=98.51  E-value=1.5e-06  Score=69.22  Aligned_cols=91  Identities=8%  Similarity=0.069  Sum_probs=60.8

Q ss_pred             ceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCce-EEEEEecccCCCCCcchhhH-HHHH
Q psy12591         18 YFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSI-CIAIKEKLVKDSGVAEETAY-DDIV   95 (144)
Q Consensus        18 ~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi-~V~~~~~~~~~~~~~~~~~~-~~~l   95 (144)
                      +-.++.|+..+++.++++++++|+|+++.+||+.+.....+.+.++.... .+. .+..........  .+..++ +.+|
T Consensus       127 l~L~l~P~~~~l~~a~~~ll~~~~W~~f~~iy~~~~gl~~lq~l~~~~~~-~~~~~~i~v~~~~~~~--~d~~~~~~~~L  203 (382)
T cd06377         127 LQMSWASPLSTLLDVLLSVLQRNGWEDVSLVLCRERDPTGLLLLWTNHAR-FHLGSVLNLSRNDPST--ADLLDFLRAQL  203 (382)
T ss_pred             EEEEecCCHHHHHHHHHHHHHHCCCcEEEEEEecCcCHHHHHHHHHHhcc-cccCceEEEEeccCcc--CChhHHHHHHH
Confidence            34577999999999999999999999999999988765544443333322 121 122222232111  013345 9999


Q ss_pred             HHHhcCCC-ceEEEEeeE
Q psy12591         96 LKLLTKPR-ARGLFKRLK  112 (144)
Q Consensus        96 ~~lk~~~~-arvii~~~~  112 (144)
                      +.|| ++. +++|++.++
T Consensus       204 ~~i~-~~~~~~~ill~cs  220 (382)
T cd06377         204 ELLK-DPPGPAVVLFGCD  220 (382)
T ss_pred             HHhh-cccCceEEEEECC
Confidence            9999 677 888888875

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in

>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily

Probab=98.51  E-value=2.1e-06  Score=62.49  Aligned_cols=93  Identities=24%  Similarity=0.415  Sum_probs=74.3

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeC-CcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEES-NYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD   93 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~-~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~   93 (144)
                      .+++++++.+++..++..+++++.+++|+++++++.+. .++....+.+++.+++.|+++.........    ++.+++.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  172 (269)
T cd01391          97 GYPYVFRVGPDNEQAGEAAAEYLAEKGWKRVALIYGDDGAYGRERLEGFKAALKKAGIEVVAIEYGDLD----TEKGFQA  172 (269)
T ss_pred             CCceEEEEcCCcHHHHHHHHHHHHHhCCceEEEEecCCcchhhHHHHHHHHHHHhcCcEEEeccccCCC----ccccHHH
Confidence            36899999999999999999999999999999999877 677778899999999999777654444333    1357777


Q ss_pred             HHHHHhcCCCceEEEEee
Q psy12591         94 IVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        94 ~l~~lk~~~~arvii~~~  111 (144)
                      ....|+..+++++|+++.
T Consensus       173 ~~~~l~~~~~~~~i~~~~  190 (269)
T cd01391         173 LLQLLKAAPKPDAIFACN  190 (269)
T ss_pred             HHHHHhcCCCCCEEEEcC
Confidence            888887433788888775

Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con

>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A

Probab=98.06  E-value=3.4e-05  Score=61.00  Aligned_cols=103  Identities=17%  Similarity=0.147  Sum_probs=75.4

Q ss_pred             CCceEEecCCchHHHHHHHHH-HHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591         16 FEYFTRTIPSDHHQVKAMVEI-VKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI   94 (144)
Q Consensus        16 ~p~ffRt~p~d~~~~~a~~~l-l~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~   94 (144)
                      -|+++=|.....+|..-+++. +.+||-+++.+|.+|-.|++.....+++.+++.|+.|+....++-+     .++|..+
T Consensus       107 S~nviYtGa~PNQ~~~pl~~~~~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg-----~td~~~i  181 (363)
T PF13433_consen  107 SPNVIYTGAAPNQQLLPLIDYLLENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLG-----ATDFDPI  181 (363)
T ss_dssp             -TTEEE-S--GGGTHHHHHHHHHHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S------HHHHHHH
T ss_pred             CCceEEcCCCchhhHHHHHHHHHhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCC-----chhHHHH
Confidence            467888999999999999995 5899999999999999999999999999999999999999999987     6899999


Q ss_pred             HHHHhcCCCceEEEEeeEEeeeCCcchhhhhH
Q psy12591         95 VLKLLTKPRARGLFKRLKLVKDSGVAEETAYD  126 (144)
Q Consensus        95 l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~  126 (144)
                      +.+|+ ..++++|  +.+.+.++.+...+.+.
T Consensus       182 i~~I~-~~~Pd~V--~stlvG~s~~aF~r~~~  210 (363)
T PF13433_consen  182 IAEIK-AAKPDFV--FSTLVGDSNVAFYRAYA  210 (363)
T ss_dssp             HHHHH-HHT-SEE--EEE--TTCHHHHHHHHH
T ss_pred             HHHHH-hhCCCEE--EEeCcCCcHHHHHHHHH
Confidence            99999 5566654  55556444444444433

>KOG1053|consensus

Probab=97.78  E-value=0.00047  Score=59.66  Aligned_cols=124  Identities=15%  Similarity=0.083  Sum_probs=86.1

Q ss_pred             CCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhh--CceEEEEEecccCCCC
Q psy12591          7 SPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAK--YSICIAIKEKLVKDSG   84 (144)
Q Consensus         7 ~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~--~Gi~V~~~~~~~~~~~   84 (144)
                      ...++++..-..|++..|+-.+|+.+++++|..|+|..++++..--+..+.+...++.....  .|..+........+. 
T Consensus       138 a~~~~~kd~gs~flQlg~Sieqqa~Vml~iL~~ydW~~Fs~vtt~~pg~~~f~~~ir~~~d~s~vgwe~i~v~~l~~s~-  216 (1258)
T KOG1053|consen  138 AMVLTPKDLGSTFLQLGPSIEQQAQVMLKILEEYDWYNFSLVTTQFPGNRTFVSLIRQTNDNSHVGWEMINVLTLDPST-  216 (1258)
T ss_pred             cceecCCCCcceEEEeCCcHHHHHHHHHHHHHHcCcceeEEEEeecCchHHHHHHHHHhhhhccccceeeeeeecCCCC-
Confidence            34455555456899999999999999999999999999999998877777777777776654  454444333333332 


Q ss_pred             CcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCccccc
Q psy12591         85 VAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRARA  140 (144)
Q Consensus        85 ~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  140 (144)
                         +........+|| +-++.||+++++     -=..+.+|.+.+..=.|+|.|+-
T Consensus       217 ---~d~~a~~q~qLk-ki~a~VillyC~-----~eea~~IF~~A~q~Gl~g~~y~W  263 (1258)
T KOG1053|consen  217 ---DDLLAKLQAQLK-KIQAPVILLYCS-----REEAERIFEEAEQAGLTGPGYVW  263 (1258)
T ss_pred             ---CchHHHHHHHHH-hcCCcEEEEEec-----HHHHHHHHHHHHhcCCcCCceEE
Confidence               222333444555 455889999885     11224668888888888888763

>cd06369 PBP1_GC_C_enterotoxin_receptor Ligand-binding domain of the membrane guanylyl cyclase C

Probab=97.42  E-value=0.00049  Score=54.65  Aligned_cols=88  Identities=19%  Similarity=0.236  Sum_probs=63.9

Q ss_pred             CCceEEecCCchHHHHHHHHHH------HhCCCcEEEEEEEeCCc---chHHHHHHHHHhhhCceEEEEEecccCCCCCc
Q psy12591         16 FEYFTRTIPSDHHQVKAMVEIV------KKLGWSYVSIIYEESNY---GVKAFEELEVLLAKYSICIAIKEKLVKDSGVA   86 (144)
Q Consensus        16 ~p~ffRt~p~d~~~~~a~~~ll------~~f~W~~Vaii~~~~~~---g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~   86 (144)
                      ++++-|..|+.+..+..++++.      ++++|+..- ||.+++-   |--...+++.....-+..+...+....     
T Consensus       121 k~~LTR~~pparK~~~~~~~f~~~~~~~~~~~W~~ay-vyk~~~~~edCf~~i~al~a~~~~f~~~~~~~~~l~~-----  194 (380)
T cd06369         121 KENLTRLLPPARKISDFFVDFWKEKNFPKKPKWETAY-VYKKQENTEDCFWYINALEAGVAYFSSALKFKELLRT-----  194 (380)
T ss_pred             hhhhhhcCchHHHHHHHHHHHHhcccccCCCCCceeE-EEcCCCCccceeeEhHhhhhhhhhhhhcccceeeecC-----
Confidence            4489999999999999999999      599998555 8876533   222456666655555555554444332     


Q ss_pred             chhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         87 EETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        87 ~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                       +.++.++|++++  ..+||||+|++
T Consensus       195 -~~~~~~il~~~~--~~sRIiImCG~  217 (380)
T cd06369         195 -EEELQKLLTDKN--RKSNVIIMCGT  217 (380)
T ss_pred             -chhHHHHHHHhc--cCccEEEEeCC
Confidence             468999999887  67999999975

Ligand-binding domain of the membrane guanylyl cyclase C (GC-C or StaR). StaR is a key receptor for the STa (Escherichia coli Heat Stable enterotoxin), a potent stimulant of intestinal chloride and bicarbonate secretion that cause acute secretory diarrhea. The catalytic domain of the STa/guanylin receptor type membrane GC is highly similar to those of the natriuretic peptide receptor (NPR) type and sensory organ-specific type membrane GCs (GC-D, GC-E and GC-F). The GC-C receptor is mainly expressed in the intestine of most vertebrates, but is also found in the kidney and other organs. Moreover, GC-C is activated by guanylin and uroguanylin, endogenous peptide ligands synthesized in the intestine and kidney. Consequently, the receptor activation results in increased cGMP levels and phosphorylation of the CFTR chloride channel and secretion.

>KOG1054|consensus

Probab=97.04  E-value=0.012  Score=49.29  Aligned_cols=90  Identities=11%  Similarity=0.197  Sum_probs=67.5

Q ss_pred             CCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHH
Q psy12591         14 QRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD   93 (144)
Q Consensus        14 ~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~   93 (144)
                      ...++..++.|+-.   .++++++.|++|.++..+|+ .+-|.+..+++-+.+.+++..|.....-..+    ++..++.
T Consensus       126 ~~~~Fviq~RP~l~---~al~s~i~hy~W~~fv~lyD-~~rg~s~Lqai~~~a~~~nw~VtA~~v~~~~----d~~~yr~  197 (897)
T KOG1054|consen  126 GDNQFVIQMRPALK---GALLSLIDHYKWEKFVYLYD-TDRGLSILQAIMEAAAQNNWQVTAINVGNIN----DVKEYRM  197 (897)
T ss_pred             CCceEEEEeCchHH---HHHHHHHHhcccceEEEEEc-ccchHHHHHHHHHHHHhcCceEEEEEcCCcc----cHHHHHH
Confidence            34567777877654   78999999999999999985 4567788899999999999988766433322    2455888


Q ss_pred             HHHHHhcCCCceEEEEee
Q psy12591         94 IVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        94 ~l~~lk~~~~arvii~~~  111 (144)
                      +++.|..+..-|++|=|.
T Consensus       198 ~f~~l~~r~e~rv~iDce  215 (897)
T KOG1054|consen  198 LFEMLDRRQENRVLIDCE  215 (897)
T ss_pred             HHHHHhccccceEEEEcc
Confidence            998888545555776554

>TIGR02990 ectoine_eutA ectoine utilization protein EutA

Probab=96.55  E-value=0.061  Score=40.44  Aligned_cols=97  Identities=16%  Similarity=0.118  Sum_probs=69.7

Q ss_pred             chHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCC--C--cchhhHHHHHHHHhcC
Q psy12591         26 DHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSG--V--AEETAYDDIVLKLLTK  101 (144)
Q Consensus        26 d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~--~--~~~~~~~~~l~~lk~~  101 (144)
                      -..-+.++++.|+++|-++|+++.   .|-....+.+.+.+++.|+.|.....+.....  .  .+...+.+.+.++. .
T Consensus       104 ~tt~~~A~~~AL~alg~~RIalvT---PY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~-~  179 (239)
T TIGR02990       104 VVTPSSAAVDGLAALGVRRISLLT---PYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAF-D  179 (239)
T ss_pred             eeCHHHHHHHHHHHcCCCEEEEEC---CCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhc-C
Confidence            344567888899999999999996   67788899999999999999987755543211  1  23456666666665 6


Q ss_pred             CCceEEEEeeEEeeeCCcchhhhhHHHHHH
Q psy12591        102 PRARGLFKRLKLVKDSGVAEETAYDDIVLK  131 (144)
Q Consensus       102 ~~arvii~~~~~~~~~g~~~~~~~~~~~~~  131 (144)
                      +++++|++.++.+     -.-.+++++|..
T Consensus       180 ~~aDAifisCTnL-----rt~~vi~~lE~~  204 (239)
T TIGR02990       180 PDADALFLSCTAL-----RAATCAQRIEQA  204 (239)
T ss_pred             CCCCEEEEeCCCc-----hhHHHHHHHHHH
Confidence            8899999888744     344455555554

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.

>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown

Probab=95.14  E-value=0.085  Score=44.16  Aligned_cols=88  Identities=7%  Similarity=0.023  Sum_probs=58.6

Q ss_pred             CceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHH
Q psy12591         17 EYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVL   96 (144)
Q Consensus        17 p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~   96 (144)
                      +-++...-+....+..++..+..-|+++..|++.+++||....++|.....+.|..+.....+..      ..++...|+
T Consensus       320 ~~l~~f~LspEdEA~q~A~~a~~~g~~~alvl~p~~~~g~R~~~aF~~~W~~~gg~~~~~~~~~~------~~~~~~~i~  393 (536)
T PF04348_consen  320 PNLYQFGLSPEDEARQAAQKAFQDGYRRALVLAPQNAWGQRMAEAFNQQWQALGGQVAEVSYYGS------PADLQAAIQ  393 (536)
T ss_dssp             TTEEE----HHHHHHHHHHHHHHTT--S-EEEEESSHHHHHHHHHHHHHHHHHHSS--EEEEESS------TTHHHHHHH
T ss_pred             cceEEEeCCcHHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHHHHHHHHcCCCceeeEecCC------HHHHHHHHh
Confidence            45566666777788999999988999999999999999999999999999998888866665642      357777776


Q ss_pred             HHhcCCCceEEEEee
Q psy12591         97 KLLTKPRARGLFKRL  111 (144)
Q Consensus        97 ~lk~~~~arvii~~~  111 (144)
                      .-. ..+.+.|++..
T Consensus       394 ~r~-r~d~D~ifl~a  407 (536)
T PF04348_consen  394 PRR-RQDIDAIFLVA  407 (536)
T ss_dssp             HS---TT--EEEE--
T ss_pred             hcC-CCCCCEEEEeC
Confidence            433 35677777654

; PDB: 3CKM_A.

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems

Probab=95.14  E-value=0.15  Score=37.12  Aligned_cols=89  Identities=11%  Similarity=0.071  Sum_probs=58.9

Q ss_pred             CceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCc-eEEEEEecccCCCCCcchhhHHH
Q psy12591         17 EYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYS-ICIAIKEKLVKDSGVAEETAYDD   93 (144)
Q Consensus        17 p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~G-i~V~~~~~~~~~~~~~~~~~~~~   93 (144)
                      +++++..+.+...+..+++.+...+-++|+++..+..  ++....+.|.+.+++.| ..+........     ...+...
T Consensus        93 ~~~~~v~~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  167 (264)
T cd01537          93 DRVPSVGSDNEQAGYLAGEHLAEKGHRRIALLAGPLGSSTARERVAGFKDALKEAGPIEIVLVQEGDW-----DAEKGYQ  167 (264)
T ss_pred             cccceEecCcHHHHHHHHHHHHHhcCCcEEEEECCCCCCcHHHHHHHHHHHHHHcCCcChhhhccCCC-----CHHHHHH
Confidence            4667777788888888899888888999999987654  55667888999998887 43332222221     1445666


Q ss_pred             HHHHHhcC-CCceEEEEe
Q psy12591         94 IVLKLLTK-PRARGLFKR  110 (144)
Q Consensus        94 ~l~~lk~~-~~arvii~~  110 (144)
                      .+.++.+. +++.++++.
T Consensus       168 ~~~~~l~~~~~~~~i~~~  185 (264)
T cd01537         168 AAEELLTAHPDPTAIFAA  185 (264)
T ss_pred             HHHHHHhcCCCCCEEEEc
Confidence            77776632 225555543

Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem

>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily

Probab=94.86  E-value=0.63  Score=33.97  Aligned_cols=89  Identities=17%  Similarity=0.130  Sum_probs=56.3

Q ss_pred             ceEEecCCchHHHHHHHHHHHhC--CCcEEEEEEEeC--CcchHHHHHHHHHhhhC-ceEEEEEecccCCCCCcchhhHH
Q psy12591         18 YFTRTIPSDHHQVKAMVEIVKKL--GWSYVSIIYEES--NYGVKAFEELEVLLAKY-SICIAIKEKLVKDSGVAEETAYD   92 (144)
Q Consensus        18 ~ffRt~p~d~~~~~a~~~ll~~f--~W~~Vaii~~~~--~~g~~~~~~~~~~l~~~-Gi~V~~~~~~~~~~~~~~~~~~~   92 (144)
                      .+....+++...+..+++.+...  |-++++++....  .++....+.|.+.+++. |+++........     +..+..
T Consensus        95 ~~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~-----~~~~~~  169 (267)
T cd01536          95 RLAYVGTDNYEAGRLAGEYLAKLLGGKGKVAIIEGPPGSSNAQERVKGFRDALKEYPDIEIVAVQDGNW-----DREKAL  169 (267)
T ss_pred             eeEEEecCHHHHHHHHHHHHHHHhCCCceEEEEEcccccchHHHHHHHHHHHHHhCCCcEEEEEecCCC-----cHHHHH
Confidence            34455566666677778877665  889999998654  36677888899999988 466543322221     134555


Q ss_pred             HHHHHHhc-CCCceEEEEee
Q psy12591         93 DIVLKLLT-KPRARGLFKRL  111 (144)
Q Consensus        93 ~~l~~lk~-~~~arvii~~~  111 (144)
                      ..+.++.+ .++..+|++..
T Consensus       170 ~~~~~~~~~~~~~~~i~~~~  189 (267)
T cd01536         170 QAMEDLLQANPDIDAIFAAN  189 (267)
T ss_pred             HHHHHHHHhCCCccEEEEec
Confidence            66666652 24455665543

Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2

>PRK09860 putative alcohol dehydrogenase; Provisional

Probab=94.74  E-value=0.19  Score=40.19  Aligned_cols=78  Identities=8%  Similarity=0.057  Sum_probs=58.8

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.+.++.+|.+++.++++..-...+..+.+.+.|++.|+.+.....+.+++   +.++..+.+...| ..+++.||-.
T Consensus        20 ~~l~~~~~~~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np---~~~~v~~~~~~~~-~~~~D~Iiai   95 (383)
T PRK09860         20 TDAMNMMADYGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNP---TTENVAAGLKLLK-ENNCDSVISL   95 (383)
T ss_pred             HHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCc---CHHHHHHHHHHHH-HcCCCEEEEe
Confidence            34566788899999998886543334567789999999998876555666665   3678888888888 6789999876


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        96 GG   97 (383)
T PRK09860         96 GG   97 (383)
T ss_pred             CC
Confidence            53

>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway

Probab=94.43  E-value=0.28  Score=39.01  Aligned_cols=78  Identities=13%  Similarity=0.103  Sum_probs=57.9

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.++++.++.+++.++++...+..+..+.+.+.|++.|+++.....+..++   +.+.+.+.+...+ ..+++.||-.
T Consensus        13 ~~l~~~l~~~g~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~d~IIai   88 (370)
T cd08192          13 KELPAECAELGIKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNP---TEAAVEAGLAAYR-AGGCDGVIAF   88 (370)
T ss_pred             HHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCC---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            34567788889999888876554444467889999999998876555565554   3677888888888 6788998876


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        89 GG   90 (370)
T cd08192          89 GG   90 (370)
T ss_pred             CC
Confidence            54

NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm

>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]

Probab=94.42  E-value=0.43  Score=38.28  Aligned_cols=78  Identities=12%  Similarity=0.018  Sum_probs=65.0

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      +.+.+.++.+|++++-||++..-...+..+.+.+.|++.|+.+.....+.+++   +.+...+-+..++ ..+.+.||.+
T Consensus        18 ~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P---~~~~v~~~~~~~~-~~~~D~iIal   93 (377)
T COG1454          18 KELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEP---TIETVEAGAEVAR-EFGPDTIIAL   93 (377)
T ss_pred             HHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCC---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            45667778899999999998877777899999999999998877777777776   4778888888888 6889999988


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        94 GG   95 (377)
T COG1454          94 GG   95 (377)
T ss_pred             CC
Confidence            64

>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism

Probab=94.11  E-value=0.41  Score=38.72  Aligned_cols=78  Identities=10%  Similarity=0.072  Sum_probs=58.9

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.++++.++.+++.++++...+..+..+.+.+.|++.|+.+.....+..++   +.+...+.+...+ ..+++.||-.
T Consensus        12 ~~l~~~l~~~g~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIai   87 (414)
T cd08190          12 AEVGMDLKNLGARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEP---TDESFKDAIAFAK-KGQFDAFVAV   87 (414)
T ss_pred             HHHHHHHHHcCCCeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCc---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            44567788899999999987665544567889999999998876555566665   3677888888888 6788998877


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        88 GG   89 (414)
T cd08190          88 GG   89 (414)
T ss_pred             CC
Confidence            64

Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT

>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like

Probab=94.10  E-value=0.4  Score=38.05  Aligned_cols=78  Identities=14%  Similarity=0.111  Sum_probs=58.2

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.++++.++.+++.++++...+.....+.+.+.|+++|+.+.....+..++   +.+++.+.+..++ ..+++.||..
T Consensus        12 ~~l~~~l~~~~~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p---~~~~v~~~~~~~~-~~~~d~Iiai   87 (370)
T cd08551          12 EKLGEEIKNLGGRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNP---TLSNVDAAVAAYR-EEGCDGVIAV   87 (370)
T ss_pred             HHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCC---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            45566778889999999987654444677889999999998775444565554   3778889999888 5778888876


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        88 GG   89 (370)
T cd08551          88 GG   89 (370)
T ss_pred             CC
Confidence            54

Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.

>PRK15454 ethanol dehydrogenase EutG; Provisional

Probab=93.99  E-value=0.33  Score=39.08  Aligned_cols=78  Identities=13%  Similarity=-0.002  Sum_probs=57.3

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.+.++.+|++++-++.+..-...+..+.+.+.|++.|+.+.....+.+++   +.+...+.+...| ..+++.||-.
T Consensus        38 ~~l~~~~~~~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P---~~~~v~~~~~~~r-~~~~D~Iiav  113 (395)
T PRK15454         38 SSCGQQAQTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEP---CITDVCAAVAQLR-ESGCDGVIAF  113 (395)
T ss_pred             HHHHHHHHhcCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCc---CHHHHHHHHHHHH-hcCcCEEEEe
Confidence            34556778899988887765443344567889999999998876555566665   3667888888888 6789999877


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus       114 GG  115 (395)
T PRK15454        114 GG  115 (395)
T ss_pred             CC
Confidence            64

>PRK10624 L-1,2-propanediol oxidoreductase; Provisional

Probab=93.90  E-value=0.4  Score=38.31  Aligned_cols=78  Identities=13%  Similarity=0.091  Sum_probs=57.4

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.+.++.+|.+++.++++..-+-.+..+.+.+.+++.|+.+.....+.+++   +.++.++.+..++ ..+++.||-.
T Consensus        19 ~~l~~~~~~~g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIai   94 (382)
T PRK10624         19 GALTDEVKRRGFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNP---TIEVVKEGVEVFK-ASGADYLIAI   94 (382)
T ss_pred             HHHHHHHHhcCCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCc---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            44667788889999988887544444577889999999998776555565554   3677888888888 5788988876


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        95 GG   96 (382)
T PRK10624         95 GG   96 (382)
T ss_pred             CC
Confidence            54

>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions

Probab=93.66  E-value=0.95  Score=33.56  Aligned_cols=77  Identities=22%  Similarity=0.290  Sum_probs=52.8

Q ss_pred             CchHHHHHHHHHHHhC--CCcEEEEEEEeC-CcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcC
Q psy12591         25 SDHHQVKAMVEIVKKL--GWSYVSIIYEES-NYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTK  101 (144)
Q Consensus        25 ~d~~~~~a~~~ll~~f--~W~~Vaii~~~~-~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~  101 (144)
                      .+...+..+++++...  |.+++++++.+. .++....+.+++.+++.|+.+.... . ..     ..++...++++.+ 
T Consensus       112 ~~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~-~-~~-----~~~~~~~~~~~~~-  183 (281)
T cd06325         112 SDLVPVETQLELLKKLLPDAKTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEAT-V-SS-----SNDVQQAAQSLAG-  183 (281)
T ss_pred             ecccchHHHHHHHHHHCCCCcEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEe-c-CC-----HHHHHHHHHHhcc-
Confidence            4455566777777664  999999997654 3677778889999999998876532 1 11     3567777888862 


Q ss_pred             CCceEEEEe
Q psy12591        102 PRARGLFKR  110 (144)
Q Consensus       102 ~~arvii~~  110 (144)
                       ..++|++.
T Consensus       184 -~~dai~~~  191 (281)
T cd06325         184 -KVDAIYVP  191 (281)
T ss_pred             -cCCEEEEc
Confidence             24666654

This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.

>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor

Probab=93.65  E-value=0.54  Score=37.47  Aligned_cols=78  Identities=15%  Similarity=0.137  Sum_probs=57.5

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.++++.++.+++.++++..-...+..+.+.+.+++.|+.+.....+..++   +.+++.+.+..++ ..+++.||-.
T Consensus        15 ~~l~~~l~~~~~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIai   90 (376)
T cd08193          15 ARLGELLAALGAKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADP---PEAVVEAAVEAAR-AAGADGVIGF   90 (376)
T ss_pred             HHHHHHHHHcCCCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCc---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            34556778889999988876553334467888899999998776555565654   4778888888888 5788888877


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        91 GG   92 (376)
T cd08193          91 GG   92 (376)
T ss_pred             CC
Confidence            64

5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.

>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1

Probab=93.46  E-value=0.47  Score=37.56  Aligned_cols=76  Identities=14%  Similarity=0.080  Sum_probs=58.4

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.+.++.+|  ++.+|++..-...+..+.+.+.|++.|+.+.....+..++   +..++.+.+..++ ..+++.||..
T Consensus        12 ~~l~~~l~~~g--r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p---~~~~v~~~~~~~~-~~~~D~IIai   85 (366)
T PF00465_consen   12 EELGEELKRLG--RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNP---TLEDVDEAAEQAR-KFGADCIIAI   85 (366)
T ss_dssp             GGHHHHHHCTT--EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS----BHHHHHHHHHHHH-HTTSSEEEEE
T ss_pred             HHHHHHHHhcC--CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCC---cHHHHHHHHHHHH-hcCCCEEEEc
Confidence            44566778887  8888887633333478999999999999987777777765   4788999999999 6789999877


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        86 GG   87 (366)
T PF00465_consen   86 GG   87 (366)
T ss_dssp             ES
T ss_pred             CC
Confidence            63

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....

>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like

Probab=93.36  E-value=0.68  Score=36.90  Aligned_cols=78  Identities=10%  Similarity=0.066  Sum_probs=57.7

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      +.+.+.++.+|-+++.++++..-+..+..+.+.+.|++.|+.+.....+..++   +.+...+.+..++ ..+++.||..
T Consensus        15 ~~l~~~l~~~g~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~d~IIai   90 (374)
T cd08189          15 AQLPAAISQLGVKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDP---TIENVEAGLALYR-ENGCDAILAV   90 (374)
T ss_pred             HHHHHHHHhcCCCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCc---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            34566778888889988886554434467888999999998776555666665   3677888888888 5789998877


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        91 GG   92 (374)
T cd08189          91 GG   92 (374)
T ss_pred             CC
Confidence            64

Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily

Probab=93.31  E-value=0.73  Score=33.43  Aligned_cols=90  Identities=16%  Similarity=0.102  Sum_probs=54.9

Q ss_pred             ceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH
Q psy12591         18 YFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV   95 (144)
Q Consensus        18 ~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l   95 (144)
                      .+....++....+..+++.+...|.+++++++.+..  ++....+.+++.+++.|..+.....+....   ...+....+
T Consensus        92 ~~~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  168 (264)
T cd06267          92 GVDSVGIDNRAGAYLAVEHLIELGHRRIAFIGGPPDLSTARERLEGYREALEEAGIPLDEELIVEGDF---SEESGYEAA  168 (264)
T ss_pred             CCCEEeeccHHHHHHHHHHHHHCCCceEEEecCCCccchHHHHHHHHHHHHHHcCCCCCcceEEeccc---chhhHHHHH
Confidence            445566666777788888777779999999986544  666777888999988885332221122221   123445555


Q ss_pred             HHHhc-CCCceEEEEe
Q psy12591         96 LKLLT-KPRARGLFKR  110 (144)
Q Consensus        96 ~~lk~-~~~arvii~~  110 (144)
                      +++.. .++.++|+..
T Consensus       169 ~~~l~~~~~~~~i~~~  184 (264)
T cd06267         169 RELLASGERPTAIFAA  184 (264)
T ss_pred             HHHHhcCCCCcEEEEc
Confidence            55552 2335555543

Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.

>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like

Probab=93.13  E-value=0.69  Score=36.86  Aligned_cols=77  Identities=14%  Similarity=0.076  Sum_probs=57.7

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++++.++.+++.++++...+..+..+.+.+.|++.|+.+.....+..++   +.+...+.+..++ ..+++.||-..
T Consensus        13 ~l~~~~~~~~~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIaiG   88 (375)
T cd08194          13 ETGAVLADLGGKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEP---TDESVEEGVKLAK-EGGCDVIIALG   88 (375)
T ss_pred             HHHHHHHHcCCCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCc---CHHHHHHHHHHHH-hcCCCEEEEeC
Confidence            4456677778899999986555544467889999999998876555666665   3677888888888 67899998776


Q ss_pred             E
Q psy12591        112 K  112 (144)
Q Consensus       112 ~  112 (144)
                      .
T Consensus        89 G   89 (375)
T cd08194          89 G   89 (375)
T ss_pred             C
Confidence            4

Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.

>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=92.88  E-value=0.82  Score=33.48  Aligned_cols=82  Identities=10%  Similarity=0.197  Sum_probs=50.3

Q ss_pred             CCchHHHHHHHHHHHhCCCcEEEEEEEe---CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHH-Hh
Q psy12591         24 PSDHHQVKAMVEIVKKLGWSYVSIIYEE---SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLK-LL   99 (144)
Q Consensus        24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~---~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~-lk   99 (144)
                      ..+...+..+++.|...|.++++++...   .+++....+.|.+.++++|+.+........+     ..+....+.+ ++
T Consensus        98 ~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~  172 (266)
T cd06282          98 VDNRAAARDVAQALAALGHRRIAMLAGRLAASDRARQRYAGYRAAMRAAGLAPLPPVEIPFN-----TAALPSALLALLT  172 (266)
T ss_pred             eCcHHHHHHHHHHHHHcCcccEEEeccccccCchHHHHHHHHHHHHHHcCCCCCccccCCCc-----HHHHHHHHHHHhc
Confidence            4555667778888777799999999642   3456667788999999988764332222211     2223344444 44


Q ss_pred             cCCCceEEEEe
Q psy12591        100 TKPRARGLFKR  110 (144)
Q Consensus       100 ~~~~arvii~~  110 (144)
                      ..+..++|+..
T Consensus       173 ~~~~~~ai~~~  183 (266)
T cd06282         173 AHPAPTAIFCS  183 (266)
T ss_pred             CCCCCCEEEEC
Confidence            22356677664

This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding

>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like

Probab=92.66  E-value=0.97  Score=36.07  Aligned_cols=77  Identities=10%  Similarity=0.010  Sum_probs=56.9

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCc-chHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEE
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNY-GVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFK  109 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~-g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~  109 (144)
                      ..+.++++.++ +++-+|++...+ ..+..+.+.+.|++.|+.+.....+.+++   +.++..+.+...+ ..+++.||-
T Consensus        15 ~~l~~~~~~~g-~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~D~Iia   89 (380)
T cd08185          15 NELGEEALKPG-KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNP---TTTTVMEGAALAR-EEGCDFVVG   89 (380)
T ss_pred             HHHHHHHHhcC-CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCC---CHHHHHHHHHHHH-HcCCCEEEE
Confidence            34556677778 898888865542 45677889999999998876555666665   3677888888888 578999987


Q ss_pred             eeE
Q psy12591        110 RLK  112 (144)
Q Consensus       110 ~~~  112 (144)
                      ...
T Consensus        90 vGG   92 (380)
T cd08185          90 LGG   92 (380)
T ss_pred             eCC
Confidence            653

Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.

>TIGR02638 lactal_redase lactaldehyde reductase

Probab=92.64  E-value=0.88  Score=36.34  Aligned_cols=78  Identities=14%  Similarity=0.129  Sum_probs=56.4

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.+.++.+|.+++-++++..-+-.+..+.+.+.|++.|+.+.....+.+++   +.+...+.+..++ ..+++.||..
T Consensus        18 ~~l~~~l~~~g~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~D~Iiai   93 (379)
T TIGR02638        18 EDIVDEVKRRGFKKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNP---TITVVKAGVAAFK-ASGADYLIAI   93 (379)
T ss_pred             HHHHHHHHhcCCCEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCc---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            34556778889999988886543333467888999999998765544555554   3677888888888 5788999877


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        94 GG   95 (379)
T TIGR02638        94 GG   95 (379)
T ss_pred             CC
Confidence            64

This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.

>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like

Probab=92.14  E-value=1.3  Score=35.43  Aligned_cols=78  Identities=8%  Similarity=-0.010  Sum_probs=55.9

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.++++.++.+++.++++....-.+..+.+.+.+++.|+.+.....+..++   +..+..+.+...+ ..+++.||..
T Consensus        17 ~~l~~~l~~~g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~d~IIai   92 (377)
T cd08188          17 KLAGRYARRLGAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNP---RDEEVMAGAELYL-ENGCDVIIAV   92 (377)
T ss_pred             HHHHHHHHHcCCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCC---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            34556678888899998886543333467788999999888765444455554   3667888888888 5788999877


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        93 GG   94 (377)
T cd08188          93 GG   94 (377)
T ss_pred             CC
Confidence            64

Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.

>KOG3857|consensus

Probab=91.99  E-value=1.8  Score=34.59  Aligned_cols=94  Identities=12%  Similarity=0.058  Sum_probs=73.1

Q ss_pred             CCCCceEEecCCchHHHHHHH----HHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchh
Q psy12591         14 QRFEYFTRTIPSDHHQVKAMV----EIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEET   89 (144)
Q Consensus        14 ~~~p~ffRt~p~d~~~~~a~~----~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~   89 (144)
                      +.-++-|-++|+....++...    .-++..|.+++.++++.+---....+..++.|+++||.+.........++   ..
T Consensus        38 k~~~~af~m~~s~~rfG~gv~~Evg~dikn~gaKk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePt---v~  114 (465)
T KOG3857|consen   38 KMMSVAFFMIPSTSRFGKGVLAEVGDDIKNLGAKKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPT---VG  114 (465)
T ss_pred             ccceeeEEeccchhhhcchhHHHHHHHHHhcCccceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCc---hh
Confidence            345677778888888877554    34788999999999988777677888899999999999988777777763   77


Q ss_pred             hHHHHHHHHhcCCCceEEEEee
Q psy12591         90 AYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        90 ~~~~~l~~lk~~~~arvii~~~  111 (144)
                      ++...|.=.| +.+-+.+|...
T Consensus       115 s~~~alefak-~~~fDs~vaiG  135 (465)
T KOG3857|consen  115 SVTAALEFAK-KKNFDSFVAIG  135 (465)
T ss_pred             hHHHHHHHHH-hcccceEEEEc
Confidence            8888888777 56666666543

>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria

Probab=91.23  E-value=1.2  Score=35.51  Aligned_cols=78  Identities=15%  Similarity=0.129  Sum_probs=55.8

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.+.++.+|-+++-++++...+-....+.+.+.|++.|+.+.....+..++   +.+...+.+...+ ..+++.||-.
T Consensus        17 ~~l~~~l~~~g~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIav   92 (377)
T cd08176          17 KEIGDELKNLGFKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNP---TITNVKDGLAVFK-KEGCDFIISI   92 (377)
T ss_pred             HHHHHHHHHhCCCeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCC---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            34556777888888888875443333567889999999998775554555554   3677888888888 5789999876


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        93 GG   94 (377)
T cd08176          93 GG   94 (377)
T ss_pred             CC
Confidence            64

Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to

>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate

Probab=91.11  E-value=2  Score=34.36  Aligned_cols=76  Identities=17%  Similarity=0.194  Sum_probs=52.7

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++++.+| +++-++++...+.....+.+.+.+++.|+.+.....+.+++   +..+....+...+ ..+++.||-..
T Consensus        13 ~l~~~~~~~g-~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~---~~~~v~~~~~~~~-~~~~D~IIaiG   87 (386)
T cd08191          13 QLPRLAARLG-SRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDL---PRSELCDAASAAA-RAGPDVIIGLG   87 (386)
T ss_pred             HHHHHHHHcC-CeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCc---CHHHHHHHHHHHH-hcCCCEEEEeC
Confidence            4556778888 88888885443334677889999999998765444444332   3556777777777 57888888776


Q ss_pred             E
Q psy12591        112 K  112 (144)
Q Consensus       112 ~  112 (144)
                      .
T Consensus        88 G   88 (386)
T cd08191          88 G   88 (386)
T ss_pred             C
Confidence            4

6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.

>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily

Probab=90.96  E-value=3.8  Score=30.24  Aligned_cols=89  Identities=16%  Similarity=0.154  Sum_probs=55.6

Q ss_pred             CceEEecCCchHHHHHHHHHHHhC--CCcEEEEEEEe--CCcchHHHHHHHHHhhhCc-eEEEEEecccCCCCCcchhhH
Q psy12591         17 EYFTRTIPSDHHQVKAMVEIVKKL--GWSYVSIIYEE--SNYGVKAFEELEVLLAKYS-ICIAIKEKLVKDSGVAEETAY   91 (144)
Q Consensus        17 p~ffRt~p~d~~~~~a~~~ll~~f--~W~~Vaii~~~--~~~g~~~~~~~~~~l~~~G-i~V~~~~~~~~~~~~~~~~~~   91 (144)
                      +.+.+..+++...+..+++.|...  +-++++++...  ...+......|++.+.+.| +.+....  ..+.   +..+.
T Consensus        98 ~~~~~v~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~--~~~~---~~~~~  172 (272)
T cd06300          98 PCAYNVNEDQAEFGKQGAEWLVKELGGKGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIVGEV--YGDW---DQAVA  172 (272)
T ss_pred             CceeEecCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEEeec--CCCC---CHHHH
Confidence            345667777777888888877554  78899999743  2345566778888888887 7765322  1121   13445


Q ss_pred             HHHHHHHhc-CCCceEEEEe
Q psy12591         92 DDIVLKLLT-KPRARGLFKR  110 (144)
Q Consensus        92 ~~~l~~lk~-~~~arvii~~  110 (144)
                      ...+.++.. .++.++|++.
T Consensus       173 ~~~~~~~l~~~~~~~~i~~~  192 (272)
T cd06300         173 QKAVADFLASNPDVDGIWTQ  192 (272)
T ss_pred             HHHHHHHHHhCCCcCEEEec
Confidence            556666652 2345665554

Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.

>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD)

Probab=90.91  E-value=2  Score=34.07  Aligned_cols=76  Identities=14%  Similarity=0.042  Sum_probs=55.1

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcc-hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYG-VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g-~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      .+.++++.+| +++-++++...+- .+..+.+.+.|++.|+.+.....+.+++   +.++..+.+..++ ..+++.||-.
T Consensus        16 ~l~~~~~~~g-~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIav   90 (357)
T cd08181          16 KHGEELAALG-KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENP---SLETIMEAVEIAK-KFNADFVIGI   90 (357)
T ss_pred             HHHHHHHHcC-CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCc---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            3456677788 8888887655433 2356778899999998876555566665   3677888888888 6789999877


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        91 GG   92 (357)
T cd08181          91 GG   92 (357)
T ss_pred             CC
Confidence            64

1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.

>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP)

Probab=90.83  E-value=2  Score=34.10  Aligned_cols=74  Identities=9%  Similarity=0.059  Sum_probs=53.4

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++++.++.+++.+|++...+   ..+.+.+.+++.|+.+.....+..++   +.++..+.+..++ ..+++.||-..
T Consensus        13 ~l~~~~~~~g~~~~livtd~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~p---~~~~v~~~~~~~~-~~~~D~IIavG   85 (367)
T cd08182          13 KLPSLLKGLGGKRVLLVTGPRSA---IASGLTDILKPLGTLVVVFDDVQPNP---DLEDLAAGIRLLR-EFGPDAVLAVG   85 (367)
T ss_pred             HHHHHHHhcCCCeEEEEeCchHH---HHHHHHHHHHHcCCeEEEEcCcCCCc---CHHHHHHHHHHHH-hcCcCEEEEeC
Confidence            45567788888999999866554   44667778888887766555566664   3677888888888 57788888765


Q ss_pred             E
Q psy12591        112 K  112 (144)
Q Consensus       112 ~  112 (144)
                      .
T Consensus        86 G   86 (367)
T cd08182          86 G   86 (367)
T ss_pred             C
Confidence            4

Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.

>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation

Probab=90.32  E-value=2.1  Score=33.66  Aligned_cols=73  Identities=15%  Similarity=0.053  Sum_probs=52.5

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++++.++ +++-+++....+. ...+.+.+.|++.|+.+.+. .+..++   +.++..+.++..+ ..+++.||...
T Consensus        13 ~l~~~~~~~~-~r~livt~~~~~~-~~~~~v~~~L~~~~i~~~~~-~~~~~p---~~~~v~~~~~~~~-~~~~D~IIavG   85 (351)
T cd08170          13 ELGEYLARLG-KRALIIADEFVLD-LVGAKIEESLAAAGIDARFE-VFGGEC---TRAEIERLAEIAR-DNGADVVIGIG   85 (351)
T ss_pred             HHHHHHHHhC-CeEEEEECHHHHH-HHHHHHHHHHHhCCCeEEEE-EeCCcC---CHHHHHHHHHHHh-hcCCCEEEEec
Confidence            4556677776 8888887544443 77888999999999887533 455554   3677888888888 57888888765

Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.

>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process

Probab=90.10  E-value=1.9  Score=34.40  Aligned_cols=77  Identities=9%  Similarity=0.052  Sum_probs=54.6

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCc-chHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEE
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNY-GVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFK  109 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~-g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~  109 (144)
                      ..+.++++.++ +++.+++....+ ..+..+.+.+.|+..|+.+.....+.+++   +..+..+.+..++ ..+++.||-
T Consensus        18 ~~l~~~~~~~~-~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIa   92 (382)
T cd08187          18 SELGKELKKYG-KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNP---RLETVREGIELCK-EEKVDFILA   92 (382)
T ss_pred             HHHHHHHHHhC-CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCC---CHHHHHHHHHHHH-HcCCCEEEE
Confidence            34556677775 888888764433 23456889999999998876555566664   3677888888888 578899887


Q ss_pred             eeE
Q psy12591        110 RLK  112 (144)
Q Consensus       110 ~~~  112 (144)
                      ...
T Consensus        93 iGG   95 (382)
T cd08187          93 VGG   95 (382)
T ss_pred             eCC
Confidence            653

The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.

>cd08171 GlyDH-like2 Glycerol dehydrogenase-like

Probab=89.36  E-value=2.9  Score=32.92  Aligned_cols=74  Identities=16%  Similarity=0.092  Sum_probs=51.0

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.+.++.++ +++-+|++...+ ....+.+.+.+++.|+.+.....+..++   +.++..+.+...+ ..+++.||-..
T Consensus        13 ~l~~~~~~~~-~r~liv~d~~~~-~~~~~~v~~~l~~~~~~~~~~~~~~~~p---~~~~v~~~~~~~~-~~~~d~iiavG   86 (345)
T cd08171          13 KIPEVCEKYG-KKVVVIGGKTAL-AAAKDKIKAALEQSGIEITDFIWYGGES---TYENVERLKKNPA-VQEADMIFAVG   86 (345)
T ss_pred             HHHHHHHhcC-CEEEEEeCHHHH-HHHHHHHHHHHHHCCCeEEEEEecCCCC---CHHHHHHHHHHHh-hcCCCEEEEeC
Confidence            3455666677 888888765444 4557788888999998776555565554   3667777777776 56788888654

Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.

>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C

Probab=89.08  E-value=2.3  Score=32.22  Aligned_cols=76  Identities=26%  Similarity=0.311  Sum_probs=46.8

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++++.++++++.++.+.+.| .-..+.+++.++..|+.+.........+   +..+..+++.+++ ..+++.||-..
T Consensus         9 ~l~~~l~~~~~~~~lvv~d~~t~-~~~g~~v~~~l~~~g~~v~~~~~~~~~~---~~~~~~~~~~~~~-~~~~d~ii~vG   83 (250)
T PF13685_consen    9 KLPEILSELGLKKVLVVTDENTY-KAAGEKVEESLKSAGIEVAVIEEFVGDA---DEDEVEKLVEALR-PKDADLIIGVG   83 (250)
T ss_dssp             GHHHHHGGGT-SEEEEEEETTHH-HHHHHHHHHHHHTTT-EEEEEE-EE------BHHHHHHHHTTS---TT--EEEEEE
T ss_pred             HHHHHHHhcCCCcEEEEEcCCHH-HHHHHHHHHHHHHcCCeEEEEecCCCCC---CHHHHHHHHHHhc-ccCCCEEEEeC
Confidence            35678888888998888876654 3466788899999999887544333332   2556666777776 46777887654


Q ss_pred             E
Q psy12591        112 K  112 (144)
Q Consensus       112 ~  112 (144)
                      .
T Consensus        84 g   84 (250)
T PF13685_consen   84 G   84 (250)
T ss_dssp             S
T ss_pred             C
Confidence            3

>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH)

Probab=88.77  E-value=4.1  Score=31.68  Aligned_cols=75  Identities=13%  Similarity=0.101  Sum_probs=52.0

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++++.++.+++.++++...+- ...+.+.+.+++. +.+.......+++   +.++..+.+..++ ..+++.||...
T Consensus        13 ~l~~~~~~~g~~~~liv~~~~~~~-~~~~~v~~~l~~~-~~~~~~~~~~~~p---~~~~v~~~~~~~~-~~~~d~IIaiG   86 (332)
T cd07766          13 KIGEEIKRGGFDRALVVSDEGVVK-GVGEKVADSLKKL-IAVHIFDGVGPNP---TFEEVKEAVERAR-AAEVDAVIAVG   86 (332)
T ss_pred             HHHHHHHhcCCCeEEEEeCCchhh-hHHHHHHHHHHhc-CcEEEeCCcCCCc---CHHHHHHHHHHHH-hcCcCEEEEeC
Confidence            345667778889998888544433 6778888888876 6554443344333   4678888888888 56788888765


Q ss_pred             E
Q psy12591        112 K  112 (144)
Q Consensus       112 ~  112 (144)
                      .
T Consensus        87 G   87 (332)
T cd07766          87 G   87 (332)
T ss_pred             C
Confidence            3

Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc

>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase

Probab=88.68  E-value=3.5  Score=32.97  Aligned_cols=77  Identities=21%  Similarity=0.198  Sum_probs=54.0

Q ss_pred             HHHHHHHhC---CCcEEEEEEEeCCcc-hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEE
Q psy12591         32 AMVEIVKKL---GWSYVSIIYEESNYG-VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGL  107 (144)
Q Consensus        32 a~~~ll~~f---~W~~Vaii~~~~~~g-~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvi  107 (144)
                      .+.++++.+   |.+++-++++...+. .+..+.+.+.+++.|+.+.....+.+++   +.+++...+..++ ..+++.|
T Consensus        13 ~l~~~l~~~~~~g~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p---~~~~v~~~~~~~~-~~~~D~I   88 (383)
T cd08186          13 KIGEILKDLKSKGISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNP---TVDQVDEAAKLGR-EFGAQAV   88 (383)
T ss_pred             HHHHHHHHhcccCCCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCC---CHHHHHHHHHHHH-HcCCCEE
Confidence            345566665   788988888654433 2346788889999998765444555554   3677888888888 5778888


Q ss_pred             EEeeE
Q psy12591        108 FKRLK  112 (144)
Q Consensus       108 i~~~~  112 (144)
                      |....
T Consensus        89 IaiGG   93 (383)
T cd08186          89 IAIGG   93 (383)
T ss_pred             EEeCC
Confidence            87754

Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.

>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators

Probab=88.44  E-value=4.4  Score=29.71  Aligned_cols=84  Identities=11%  Similarity=0.096  Sum_probs=49.6

Q ss_pred             CCchHHHHHHHHHHHhCCCcEEEEEEEe---CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhc
Q psy12591         24 PSDHHQVKAMVEIVKKLGWSYVSIIYEE---SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLT  100 (144)
Q Consensus        24 p~d~~~~~a~~~ll~~f~W~~Vaii~~~---~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~  100 (144)
                      ..+...+..+++.+...|.++|+++...   ..++......|.+.++++|+.+.....+....   +..+....+.++.+
T Consensus        98 ~d~~~~~~~~~~~l~~~g~~~i~~i~~~~~~~~~~~~r~~gf~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~  174 (268)
T cd06273          98 FDNREAGRLAARHLIALGHRRIAMIFGPTQGNDRARARRAGVRAALAEAGLELPELWQVEAPY---SIADGRAALRQLLE  174 (268)
T ss_pred             eChHHHHHHHHHHHHHCCCCeEEEEeccccCCccHHHHHHHHHHHHHHcCCCCCHHHeeeCCC---cHHHHHHHHHHHHc
Confidence            3445566777787766699999999743   23466678889999999886543222222111   12223344555542


Q ss_pred             -CCCceEEEEe
Q psy12591        101 -KPRARGLFKR  110 (144)
Q Consensus       101 -~~~arvii~~  110 (144)
                       .+..++|++.
T Consensus       175 ~~~~~~ai~~~  185 (268)
T cd06273         175 QPPRPTAVICG  185 (268)
T ss_pred             CCCCCCEEEEc
Confidence             2456676653

This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational

>PRK09423 gldA glycerol dehydrogenase; Provisional

Probab=87.41  E-value=4.9  Score=31.93  Aligned_cols=74  Identities=14%  Similarity=0.104  Sum_probs=51.6

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.+.++.+| +++-+|++...+ ....+.+.+.++..|+.+.+. .+..++   +.+...+.+..++ ..+++.||..
T Consensus        19 ~~l~~~l~~~g-~~~livtd~~~~-~~~~~~v~~~l~~~~~~~~~~-~~~~ep---~~~~v~~~~~~~~-~~~~d~IIav   91 (366)
T PRK09423         19 ARLGEYLKPLG-KRALVIADEFVL-GIVGDRVEASLKEAGLTVVFE-VFNGEC---SDNEIDRLVAIAE-ENGCDVVIGI   91 (366)
T ss_pred             HHHHHHHHHcC-CEEEEEEChhHH-HHHHHHHHHHHHhCCCeEEEE-EeCCCC---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            34456677888 888888854444 347788888899899876433 355554   3567888888888 5678888866


Q ss_pred             e
Q psy12591        111 L  111 (144)
Q Consensus       111 ~  111 (144)
                      .
T Consensus        92 G   92 (366)
T PRK09423         92 G   92 (366)
T ss_pred             c
Confidence            4

>cd08550 GlyDH-like Glycerol_dehydrogenase-like

Probab=87.01  E-value=4.6  Score=31.80  Aligned_cols=74  Identities=16%  Similarity=0.139  Sum_probs=49.2

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.++++.+| +++.++++...+ ....+.+.+.+++.|+.+.... |..++   +.+...+.+..++ ..+++.||..
T Consensus        12 ~~l~~~~~~~g-~~~liv~~~~~~-~~~~~~v~~~l~~~~i~~~~~~-~~~~p---~~~~v~~~~~~~~-~~~~d~IIav   84 (349)
T cd08550          12 KEIAAILSTFG-SKVAVVGGKTVL-KKSRPRFEAALAKSIIVVDVIV-FGGEC---STEEVVKALCGAE-EQEADVIIGV   84 (349)
T ss_pred             HHHHHHHHHcC-CeEEEEEChHHH-HHHHHHHHHHHHhcCCeeEEEE-cCCCC---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            34556778888 888777654433 3566888888988887654332 44343   2566777888887 5678888765


Q ss_pred             e
Q psy12591        111 L  111 (144)
Q Consensus       111 ~  111 (144)
                      .
T Consensus        85 G   85 (349)
T cd08550          85 G   85 (349)
T ss_pred             c
Confidence            4

Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.

>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like

Probab=85.32  E-value=8  Score=30.79  Aligned_cols=72  Identities=13%  Similarity=0.034  Sum_probs=50.9

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++++.++ +++.++++....   ..+.+.+.|++.|+.+.... +..++   +.+++.+.+...| ..+++.||...
T Consensus        13 ~l~~~l~~~~-~r~livtd~~~~---~~~~v~~~L~~~g~~~~~~~-~~~~p---~~~~v~~~~~~~~-~~~~D~IIaiG   83 (374)
T cd08183          13 ELPALAAELG-RRVLLVTGASSL---RAAWLIEALRAAGIEVTHVV-VAGEP---SVELVDAAVAEAR-NAGCDVVIAIG   83 (374)
T ss_pred             HHHHHHHHcC-CcEEEEECCchH---HHHHHHHHHHHcCCeEEEec-CCCCc---CHHHHHHHHHHHH-hcCCCEEEEec
Confidence            4556677775 888888765443   66778888999998765433 44444   3677888888888 67899998876


Q ss_pred             E
Q psy12591        112 K  112 (144)
Q Consensus       112 ~  112 (144)
                      .
T Consensus        84 G   84 (374)
T cd08183          84 G   84 (374)
T ss_pred             C
Confidence            4

Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.

>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial

Probab=85.04  E-value=11  Score=26.52  Aligned_cols=66  Identities=11%  Similarity=-0.048  Sum_probs=43.9

Q ss_pred             CCcEEEEEEEeCCcch---HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         41 GWSYVSIIYEESNYGV---KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        41 ~W~~Vaii~~~~~~g~---~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      ..-++++|...|.-+.   .....+...+++.|+.+.....++.+     ...+.+.|.+..+..++++||.-.
T Consensus         3 ~~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd-----~~~i~~~l~~~~~~~~~DlVIttG   71 (163)
T TIGR02667         3 IPLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAIVKDD-----IYQIRAQVSAWIADPDVQVILITG   71 (163)
T ss_pred             CccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEEcCCC-----HHHHHHHHHHHHhcCCCCEEEECC
Confidence            3457888865553322   23557778899999988877777655     566777777764224688887764

This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.

>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis

Probab=84.80  E-value=12  Score=27.57  Aligned_cols=84  Identities=13%  Similarity=0.143  Sum_probs=48.7

Q ss_pred             ecCCchHHHHHHHHHHHhC--CCcEEEEEEEeCC-c-chHHHHHHHHHhhhC-ceEEEEEecccCCCCCcchhhHHHHHH
Q psy12591         22 TIPSDHHQVKAMVEIVKKL--GWSYVSIIYEESN-Y-GVKAFEELEVLLAKY-SICIAIKEKLVKDSGVAEETAYDDIVL   96 (144)
Q Consensus        22 t~p~d~~~~~a~~~ll~~f--~W~~Vaii~~~~~-~-g~~~~~~~~~~l~~~-Gi~V~~~~~~~~~~~~~~~~~~~~~l~   96 (144)
                      ...++...+..+++.+...  |.++++++....+ . .....+.|.+.++++ |+.+......  ..   ...+....++
T Consensus       100 V~~d~~~~g~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~  174 (275)
T cd06320         100 VGTDNKANGVRGAEWIIDKLAEGGKVAIIEGKAGAFAAEQRTEGFTEAIKKASGIEVVASQPA--DW---DREKAYDVAT  174 (275)
T ss_pred             EecCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHhhCCCcEEEEecCC--Cc---cHHHHHHHHH
Confidence            3444555577777776544  8999999975332 2 344567789999998 8876543211  11   1233444555


Q ss_pred             HHhc-CCCceEEEEe
Q psy12591         97 KLLT-KPRARGLFKR  110 (144)
Q Consensus        97 ~lk~-~~~arvii~~  110 (144)
                      ++.. .++.++|+..
T Consensus       175 ~~l~~~~~~~ai~~~  189 (275)
T cd06320         175 TILQRNPDLKAIYCN  189 (275)
T ss_pred             HHHHhCCCccEEEEC
Confidence            5542 3445565544

Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.

>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG

Probab=84.50  E-value=5.1  Score=24.29  Aligned_cols=42  Identities=24%  Similarity=0.278  Sum_probs=34.5

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEE
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIA   74 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~   74 (144)
                      ...++++.+ -++|.+.+++|.-|...+..+.+.+.+.|..+.
T Consensus        34 ~~~~~L~~~-~~~vii~~D~D~aG~~a~~~~~~~l~~~g~~~~   75 (79)
T cd03364          34 EQAELLKRL-AKEVILAFDGDEAGQKAALRALELLLKLGLNVR   75 (79)
T ss_pred             HHHHHHHhc-CCeEEEEECCCHHHHHHHHHHHHHHHHCCCeEE
Confidence            456666655 588889999999999999999999999987764

Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.

>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria

Probab=84.40  E-value=4  Score=32.49  Aligned_cols=71  Identities=11%  Similarity=0.001  Sum_probs=49.6

Q ss_pred             HhCCCcEEEEEEEeCCcc-hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         38 KKLGWSYVSIIYEESNYG-VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        38 ~~f~W~~Vaii~~~~~~g-~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      ..++-+++.++++...+- .+..+.+.+.|++.|+.+.....+.+++   +.+.+.+.+..++ ..+++.||-...
T Consensus        19 ~~~~~~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIavGG   90 (375)
T cd08179          19 KTLKGKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDP---SVETVLKGAEAMR-EFEPDWIIALGG   90 (375)
T ss_pred             HHhcCCeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCc---CHHHHHHHHHHHH-hcCCCEEEEeCC
Confidence            334457888887544332 3456788889999998776555555554   3677888888888 678899987764

NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.

>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs

Probab=84.28  E-value=14  Score=26.94  Aligned_cols=55  Identities=20%  Similarity=0.175  Sum_probs=37.1

Q ss_pred             EEecCCchH-HHHHHHHHHHhC--CCcEEEEEEEeC--CcchHHHHHHHHHhhhC-ceEEE
Q psy12591         20 TRTIPSDHH-QVKAMVEIVKKL--GWSYVSIIYEES--NYGVKAFEELEVLLAKY-SICIA   74 (144)
Q Consensus        20 fRt~p~d~~-~~~a~~~ll~~f--~W~~Vaii~~~~--~~g~~~~~~~~~~l~~~-Gi~V~   74 (144)
                      +..+..|.. .+..+++.|...  |-++++++..+.  .++....+.|.+.++++ |+.+.
T Consensus        96 ~~~v~~d~~~~~~~~~~~l~~~~~g~~~i~~l~~~~~~~~~~~r~~g~~~~l~~~~~~~~~  156 (268)
T cd06323          96 VSQIASDNVAGGKMAAEYLVKLLGGKGKVVELQGIPGASAARERGKGFHEVVDKYPGLKVV  156 (268)
T ss_pred             EEEEccCcHHHHHHHHHHHHHHhCCCceEEEEeCCCCCccHHHHHHHHHHHHHhCCCcEEE
Confidence            344444444 567777876555  789999997643  34556678888888884 77654

Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.

>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD)

Probab=83.98  E-value=5  Score=32.29  Aligned_cols=70  Identities=6%  Similarity=-0.053  Sum_probs=50.6

Q ss_pred             hCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         39 KLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        39 ~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      ..+.+++.+|++..-...+..+.+.+.|++.|+.+.....+.+++   +.+...+.+..++ ..++++||-...
T Consensus        18 ~~~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIaiGG   87 (398)
T cd08178          18 LKGKKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDP---SLETVRKGLELMN-SFKPDTIIALGG   87 (398)
T ss_pred             hcCCCeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCc---CHHHHHHHHHHHH-hcCCCEEEEeCC
Confidence            346688888875433333477888999999998876555666665   3677888888888 678999987764

Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi

>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=82.51  E-value=11  Score=27.36  Aligned_cols=54  Identities=9%  Similarity=0.063  Sum_probs=39.4

Q ss_pred             EEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEE
Q psy12591         20 TRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICI   73 (144)
Q Consensus        20 fRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V   73 (144)
                      ....++....+..+++.+...|-++|+++..+..  ......+.|.+.+++.|..+
T Consensus        93 ~~v~~d~~~~g~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~  148 (266)
T cd06278          93 DAVCSDNYEAGRLAAELLLAKGCRRIAFIGGPADTSTSRERERGFRDALAAAGVPV  148 (266)
T ss_pred             CEEEEChHHHHHHHHHHHHHCCCceEEEEcCCCcccchHHHHHHHHHHHHHcCCCh
Confidence            3455666777788888887778899999975433  34456678888888888754

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]

Probab=82.48  E-value=18  Score=28.49  Aligned_cols=80  Identities=19%  Similarity=0.189  Sum_probs=54.8

Q ss_pred             ecCCchHHHHHHHHHHHh--CCCcEEEEEEEeCC-cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH
Q psy12591         22 TIPSDHHQVKAMVEIVKK--LGWSYVSIIYEESN-YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL   98 (144)
Q Consensus        22 t~p~d~~~~~a~~~ll~~--f~W~~Vaii~~~~~-~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l   98 (144)
                      |.-+|..-...-++|++.  =+-++|+++|..++ ......+.+++.+++.|++|.-. .++..      .+....++.|
T Consensus       137 TGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~-~v~~~------ndi~~a~~~l  209 (322)
T COG2984         137 TGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEA-AVTSV------NDIPRAVQAL  209 (322)
T ss_pred             eecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEE-ecCcc------cccHHHHHHh
Confidence            555666655556666654  37899999997654 67788999999999999998533 33332      3566677777


Q ss_pred             hcCCCceEEEEe
Q psy12591         99 LTKPRARGLFKR  110 (144)
Q Consensus        99 k~~~~arvii~~  110 (144)
                      .  .++++|+.-
T Consensus       210 ~--g~~d~i~~p  219 (322)
T COG2984         210 L--GKVDVIYIP  219 (322)
T ss_pred             c--CCCcEEEEe
Confidence            6  456666543

>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea

Probab=82.31  E-value=8.6  Score=28.88  Aligned_cols=60  Identities=10%  Similarity=0.145  Sum_probs=41.1

Q ss_pred             EEEEEEE----eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         44 YVSIIYE----ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        44 ~Vaii~~----~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      +|++++.    |..|.....+.+++..++.|+.+.+.+... .     ..++...++++. ..+.++||..
T Consensus         1 kva~l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~~-~-----~~~~~~~i~~~~-~~g~dlIi~~   64 (258)
T cd06353           1 KVAFVYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENVP-E-----GADAERVLRELA-AQGYDLIFGT   64 (258)
T ss_pred             CEEEEEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecCC-c-----hHhHHHHHHHHH-HcCCCEEEEC
Confidence            3677765    334555567777777777888887776553 1     457788888887 5678888773

Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.

>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner

Probab=82.01  E-value=11  Score=29.60  Aligned_cols=76  Identities=21%  Similarity=0.317  Sum_probs=49.0

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++++.++.+++.++++...+.. ..+.+.+.+++.|+.+.........+ .++.+...+.+..++ . +++.||...
T Consensus        13 ~l~~~~~~~~~~~~livtd~~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~-~pt~~~v~~~~~~~~-~-~~d~IIaIG   88 (348)
T cd08175          13 RLPEILKEFGYKKALIVADENTYAA-AGKKVEALLKRAGVVVLLIVLPAGDL-IADEKAVGRVLKELE-R-DTDLIIAVG   88 (348)
T ss_pred             HHHHHHHhcCCCcEEEEECCcHHHH-HHHHHHHHHHHCCCeeEEeecCCCcc-cCCHHHHHHHHHHhh-c-cCCEEEEEC
Confidence            4566777788889888875443332 35788889999998664333333220 123667777777777 4 788887654

Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.

>TIGR01481 ccpA catabolite control protein A

Probab=81.77  E-value=15  Score=28.04  Aligned_cols=82  Identities=13%  Similarity=0.024  Sum_probs=47.2

Q ss_pred             CchHHHHHHHHHHHhCCCcEEEEEEEeC--C-cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcC
Q psy12591         25 SDHHQVKAMVEIVKKLGWSYVSIIYEES--N-YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTK  101 (144)
Q Consensus        25 ~d~~~~~a~~~ll~~f~W~~Vaii~~~~--~-~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~  101 (144)
                      .+..-+..+++.|...|.++|+++....  . .+....+.|.+.++++|+.+..........   +..+-...+.++. .
T Consensus       159 D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~~~ll-~  234 (329)
T TIGR01481       159 DYKQATKEAVGELIAKGHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKY---SYDAGYKAFAELK-G  234 (329)
T ss_pred             CcHHHHHHHHHHHHHCCCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCC---ChHHHHHHHHHHh-C
Confidence            3444446667777677999999996432  2 235667888999999887643211111111   1222334555655 3


Q ss_pred             CCceEEEEe
Q psy12591        102 PRARGLFKR  110 (144)
Q Consensus       102 ~~arvii~~  110 (144)
                      ....+|++.
T Consensus       235 ~~p~ai~~~  243 (329)
T TIGR01481       235 SLPTAVFVA  243 (329)
T ss_pred             CCCCEEEEc
Confidence            345677664

Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.

>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines

Probab=81.69  E-value=6.5  Score=28.89  Aligned_cols=22  Identities=5%  Similarity=-0.075  Sum_probs=10.5

Q ss_pred             CcchHHHHHHHHHhhh-CceEEE
Q psy12591         53 NYGVKAFEELEVLLAK-YSICIA   74 (144)
Q Consensus        53 ~~g~~~~~~~~~~l~~-~Gi~V~   74 (144)
                      .|+......+.+.+++ .|+.+.
T Consensus        12 ~~~~~~~~gi~~~~~~~~~~~~~   34 (272)
T cd06301          12 NFLTLLRNAMKEHAKVLGGVELQ   34 (272)
T ss_pred             HHHHHHHHHHHHHHHHcCCcEEE
Confidence            3444444445555555 444443

Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.

>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism

Probab=81.41  E-value=6.3  Score=30.82  Aligned_cols=73  Identities=16%  Similarity=0.070  Sum_probs=46.8

Q ss_pred             HHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         35 EIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        35 ~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      +-+..++.+++.++++..-+..+..+.+.+.+++. +.+.....+..++   +.+...+.+..++ ..+++.||-...
T Consensus        15 ~~l~~~~~~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~d~IiaiGG   87 (332)
T cd08180          15 ERLKELKNKRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDP---PIEVVAKGIKKFL-DFKPDIVIALGG   87 (332)
T ss_pred             HHHHHhCCCeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCc---CHHHHHHHHHHHH-hcCCCEEEEECC
Confidence            33455566888888754333334667788888776 5544334444454   3667778888888 567888886653

1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat

>cd00886 MogA_MoaB MogA_MoaB family

Probab=81.35  E-value=15  Score=25.36  Aligned_cols=63  Identities=10%  Similarity=0.076  Sum_probs=41.2

Q ss_pred             EEEEEEEeCC--cch---HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         44 YVSIIYEESN--YGV---KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        44 ~Vaii~~~~~--~g~---~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      ++++|..+++  .|+   .....+...+++.|..+.....++.+     .+.+.+.|++..+.+++++||...
T Consensus         2 ~~~ii~~~~e~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd-----~~~i~~~l~~~~~~~~~DlVittG   69 (152)
T cd00886           2 RAAVLTVSDTRSAGEAEDRSGPALVELLEEAGHEVVAYEIVPDD-----KDEIREALIEWADEDGVDLILTTG   69 (152)
T ss_pred             EEEEEEEcCcccCCCCccchHHHHHHHHHHcCCeeeeEEEcCCC-----HHHHHHHHHHHHhcCCCCEEEECC
Confidence            5677765542  222   24556888899999888776666655     466777777665223688887764

Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=80.93  E-value=6.4  Score=28.76  Aligned_cols=22  Identities=5%  Similarity=0.076  Sum_probs=11.2

Q ss_pred             cchHHHHHHHHHhhhCceEEEE
Q psy12591         54 YGVKAFEELEVLLAKYSICIAI   75 (144)
Q Consensus        54 ~g~~~~~~~~~~l~~~Gi~V~~   75 (144)
                      |+......+++.+++.|+.+..
T Consensus        12 ~~~~~~~g~~~~a~~~g~~~~~   33 (257)
T PF13407_consen   12 FWQQVIKGAKAAAKELGYEVEI   33 (257)
T ss_dssp             HHHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCEEEE
Confidence            4445555555555555554443

...

>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=80.70  E-value=6.8  Score=28.79  Aligned_cols=14  Identities=21%  Similarity=0.197  Sum_probs=7.7

Q ss_pred             HHHHHHHHhCCCcE
Q psy12591         31 KAMVEIVKKLGWSY   44 (144)
Q Consensus        31 ~a~~~ll~~f~W~~   44 (144)
                      ..+.+.++..||+-
T Consensus        19 ~g~~~~~~~~g~~~   32 (273)
T cd06310          19 AGAEAAAKELGVKV   32 (273)
T ss_pred             HHHHHHHHHcCCEE
Confidence            44445556667653

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A

Probab=80.67  E-value=11  Score=25.88  Aligned_cols=38  Identities=16%  Similarity=0.224  Sum_probs=13.1

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhh
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAK   68 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~   68 (144)
                      ..++..+...|..--.++...++-..+..+.++...+.
T Consensus        15 ~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D   52 (138)
T PF13607_consen   15 TAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAED   52 (138)
T ss_dssp             HHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-
T ss_pred             HHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcC
Confidence            33444444433322223333333344444444444433

>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria

Probab=80.44  E-value=17  Score=26.46  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=37.1

Q ss_pred             ecCCchHHHHHHHHHHHhCCCcEEEEEEEe--CCcchHHHHHHHHHhhhCceE
Q psy12591         22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEE--SNYGVKAFEELEVLLAKYSIC   72 (144)
Q Consensus        22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~   72 (144)
                      ...++...+..+++.+..-|.++++++...  +..+....+.|.+.++++|+.
T Consensus        95 v~~d~~~~g~~~~~~l~~~g~~~i~~l~~~~~~~~~~~r~~gf~~~~~~~~~~  147 (267)
T cd06284          95 VSIDNVAAARLAVDHLISLGHRRIALITGPRDNPLARDRLEGYRQALAEAGLP  147 (267)
T ss_pred             EEecccHHHHHHHHHHHHcCCceEEEEcCCccchhHHHHHHHHHHHHHHcCCC
Confidence            444555666777887777799999999764  234566778888999888854

This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
2e4u_A	555	Crystal Structure Of The Extracellular Region Of Th		6e-19
3lmk_A	492	Ligand Binding Domain Of Metabotropoc Glutamate Rec		2e-17
3sm9_A	479	Crystal Structure Of Metabotropic Glutamate Recepto		3e-17
2e4z_A	501	Crystal Structure Of The Ligand-Binding Region Of T		3e-16
3mq4_A	481	Metabotropic Glutamate Receptor Mglur7 Complexed Wi		1e-15
1ewk_A	490	Crystal Structure Of Metabotropic Glutamate Recepto		3e-15
3ks9_A	496	Metabotropic Glutamate Receptor Mglur1 Complexed Wi		4e-14
4f11_A	433	Crystal Structure Of The Extracellular Domain Of Hu		3e-05

>pdb|2E4U|A Chain A, Crystal Structure Of The Extracellular Region Of The Group Ii Metabotropic Glutamate Receptor Complexed With L-glutamate Length = 555

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%)
Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 145 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 204
Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
             E      +ICIA  EK+ + +      +YD ++ +LL KP AR
Sbjct: 205 AFEQEARLRNICIATAEKVGRSN---IRKSYDSVIRELLQKPNAR 246

>pdb|3LMK|A Chain A, Ligand Binding Domain Of Metabotropoc Glutamate Receptor Mglur5 Complexed With Glutamate Length = 492

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/106 (39%), Positives = 67/106 (63%), Gaps = 4/106 (3%)
Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +++ +TS +LS+K  F+YF R +PSD  Q +AMV+IVK+  W+YVS ++ E NYG    E
Sbjct: 157 IAYSATSMDLSDKTLFKYFMRVVPSDAQQARAMVDIVKRYNWTYVSAVHTEGNYGESGME 216
Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTK-PRAR 105
             + + AK  I IA   K+  ++G   E ++D ++ KL +  P+AR
Sbjct: 217 AFKDMSAKEGISIAHSYKIYSNAG---EQSFDKLLKKLTSHLPKAR 259

>pdb|3SM9|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor 3 Precursor In Presence Of Ly341495 Antagonist Length = 479

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%)
Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 144 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 203
Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
             E      +I IA  EK+ + +      +YD ++ +LL KP AR
Sbjct: 204 AFEQEARLRNISIATAEKVGRSN---IRKSYDSVIRELLQKPNAR 245

>pdb|2E4Z|A Chain A, Crystal Structure Of The Ligand-Binding Region Of The Group Iii Metabotropic Glutamate Receptor Length = 501

Iteration: 1
 Score = 80.5 bits (197), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ ST+PELS+ +R+++F+R +P D  Q +AMV+IVK LGW+YVS +  E +YG K  E
Sbjct: 145 ISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVE 204
Query: 61  EL-EVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGL 107
              ++      +CIA   ++ ++        +D I+ +LL  P +R +
Sbjct: 205 SFTQISKEAGGLCIAQSVRIPQERK-DRTIDFDRIIKQLLDTPNSRAV 251

>pdb|3MQ4|A Chain A, Metabotropic Glutamate Receptor Mglur7 Complexed With Ly3414 Antagonist Length = 481

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 39/108 (36%), Positives = 67/108 (62%), Gaps = 2/108 (1%)
Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ ST+PELS+ +R+++F+R +P D  Q +AMV+IVK LGW+YVS +  E +YG K  E
Sbjct: 145 ISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVE 204
Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETA-YDDIVLKLLTKPRARGL 107
                ++K +  ++I + +       + T  +D I+ +LL  P +R +
Sbjct: 205 SF-TQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAV 251

>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor Subtype 1 Complexed With Glutamate Length = 490

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +++ +TS +LS+K  ++YF R +PSD  Q +AM++IVK+  W+YVS ++ E NYG    +
Sbjct: 151 IAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMD 210
Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYD 92
             + L A+  +CIA  +K+  ++G   E ++D
Sbjct: 211 AFKELAAQEGLCIAHSDKIYSNAG---EKSFD 239

>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With Ly341495 Antagonist Length = 496

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/92 (35%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +++ +TS +LS+K  ++YF R +PSD  Q +AM++IVK+  W+YVS ++ E NYG    +
Sbjct: 156 IAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMD 215
Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYD 92
             + L A+  + IA  +K+  ++G   E ++D
Sbjct: 216 AFKELAAQEGLSIAHSDKIYSNAG---EKSFD 244

>pdb|4F11|A Chain A, Crystal Structure Of The Extracellular Domain Of Human Gaba(B) Receptor Gbr2 Length = 433

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +SF +T+P L++K+++ YF RT+PSD+    A+++++K   W  V  + ++    V+ F 
Sbjct: 113 LSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQD----VQRFS 168
Query: 61  EL 62
           E+
Sbjct: 169 EV 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
2e4u_A	555	Metabotropic glutamate receptor 3; G-protein-coupl	1e-34
3sm9_A	479	Mglur3, metabotropic glutamate receptor 3; structu	2e-33
3ks9_A	496	Mglur1, metabotropic glutamate receptor 1; glutama	1e-31
3mq4_A	481	Mglur7, metabotropic glutamate receptor 7; glutama	1e-30
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	1e-28
3qek_A	384	NMDA glutamate receptor subunit; amino terminal do	2e-25
3qel_B	364	Glutamate [NMDA] receptor subunit epsilon-2; ION c	7e-22
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	2e-19
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	2e-19
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	3e-18
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	1e-10
3hsy_A	376	Glutamate receptor 2; ligand-gated ION channel, sy	4e-09
3saj_A	384	Glutamate receptor 1; rossman fold, ION channel, m	5e-08
3o21_A	389	Glutamate receptor 3; periplasmatic binding protei	1e-07
3sg0_A	386	Extracellular ligand-binding receptor; structural	2e-07
3lkb_A	392	Probable branched-chain amino acid ABC transporter	7e-07
3ipc_A	356	ABC transporter, substrate binding protein (amino;	1e-06
1usg_A	346	Leucine-specific binding protein; leucine-binding	3e-06
3hut_A	358	Putative branched-chain amino acid ABC transporter	4e-06
3lop_A	364	Substrate binding periplasmic protein; protein str	4e-06
3snr_A	362	Extracellular ligand-binding receptor; structural	4e-06
4evq_A	375	Putative ABC transporter subunit, substrate-bindi	4e-05
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	4e-05
3i45_A	387	Twin-arginine translocation pathway signal protei;	9e-05

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A* Length = 555

 Score =  125 bits (315), Expect = 1e-34
 Identities = 43/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 145 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 204

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
             E      +ICIA  EK+ + +      +YD ++ +LL KP AR
Sbjct: 205 AFEQEARLRNICIATAEKVGRSN---IRKSYDSVIRELLQKPNAR 246

>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens} Length = 479

 Score =  121 bits (304), Expect = 2e-33
 Identities = 42/105 (40%), Positives = 63/105 (60%), Gaps = 3/105 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ STS +LS+K R++YF RT+P D +Q KAM EI++   W+YVS +  E +YG    E
Sbjct: 144 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIE 203

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
             E      +I IA  EK+ + +      +YD ++ +LL KP AR
Sbjct: 204 AFEQEARLRNISIATAEKVGRSNI---RKSYDSVIRELLQKPNAR 245

>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A* Length = 496

 Score =  116 bits (291), Expect = 1e-31
 Identities = 38/106 (35%), Positives = 67/106 (63%), Gaps = 4/106 (3%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +++ +TS +LS+K  ++YF R +PSD  Q +AM++IVK+  W+YVS ++ E NYG    +
Sbjct: 156 IAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMD 215

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL-TKPRAR 105
             + L A+  + IA  +K+  ++G   E ++D ++ KL    P+AR
Sbjct: 216 AFKELAAQEGLSIAHSDKIYSNAG---EKSFDRLLRKLRERLPKAR 258

>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} PDB: 2e4z_A* Length = 481

 Score =  113 bits (284), Expect = 1e-30
 Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 2/106 (1%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S+ ST+PELS+ +R+++F+R +P D  Q +AMV+IVK LGW+YVS +  E +YG K  E
Sbjct: 145 ISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVE 204

Query: 61  ELEVLLAKYS-ICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
               +  +   + IA   ++ ++        +D I+ +LL  P +R
Sbjct: 205 SFTQISKEAGGLSIAQSVRIPQERK-DRTIDFDRIIKQLLDTPNSR 249

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A* Length = 433

 Score =  107 bits (269), Expect = 1e-28
 Identities = 27/111 (24%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +SF +T+P L++K+++ YF RT+PSD+    A+++++K   W  V  + ++     +   
Sbjct: 113 LSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRN 172

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD---IVLKLLTKPRARGLF 108
           +L  +L    I I+  E    D   + +    +   I+L    +  A  +F
Sbjct: 173 DLTGVLYGEDIEISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVF 223

>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A* Length = 384

 Score = 98.3 bits (244), Expect = 2e-25
 Identities = 24/119 (20%), Positives = 43/119 (36%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +   +     S+K     F RT+P   HQ     E+++   W++V +I  + + G  A +
Sbjct: 98  IGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQK 157

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGV 119
           +LE LL         +     D    +          L  +P  + L   L   K+   
Sbjct: 158 KLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEA 216

>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A* Length = 364

 Score = 88.3 bits (218), Expect = 7e-22
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 4/106 (3%)

Query: 1   VSF-WSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAF 59
           +     +S  +++K     F +  PS   Q   M+ I+++  W   SI+           
Sbjct: 94  LGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYFPGYQDFV 153

Query: 60  EELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
            ++   +    +   ++E L+ D  + +    D  +   L K ++ 
Sbjct: 154 NKIRSTIENSFVGWELEEVLLLDMSLDD---GDSKIQNQLKKLQSP 196

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A* Length = 441

 Score = 82.5 bits (203), Expect = 2e-19
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 3/109 (2%)

Query: 1   VSFWSTSPELSNKQ-RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAF 59
           +S  + +    +K   + + TR  P+     + M+ + +   WS  +++Y +       +
Sbjct: 112 LSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCY 171

Query: 60  EELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLF 108
             LE +   +            D    ++   +DIV  +    R   + 
Sbjct: 172 FTLEGVHEVFQEEGLHTSIYSFDE--TKDLDLEDIVRNIQASERVVIMC 218

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A* Length = 435

 Score = 82.1 bits (202), Expect = 2e-19
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           ++  + +  +  K  +   TRT PS       +  + ++LGW + +++      G     
Sbjct: 105 LTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPC 164

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPR 103
              V      +   +   +     V       D   KLL   R
Sbjct: 165 FFIVEGLYMRVRERLNITVNHQEFV---EGDPDHYPKLLRAVR 204

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A* Length = 395

 Score = 78.6 bits (193), Expect = 3e-18
 Identities = 16/105 (15%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +          NK    ++    P      +A++++V+   W  V+++Y + + G+   +
Sbjct: 99  IQTRWKHQVSDNKDS--FYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQ 155

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
           EL    ++Y++ + I++       +  +T     +LK + + +  
Sbjct: 156 ELIKAPSRYNLRLKIRQ-------LPADTKDAKPLLKEMKRGKEF 193

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A Length = 393

 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 2/76 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +             RF       PS+     A+  I+K   +   S+I       +   E
Sbjct: 99  IKVGPEETPRLQYLRF-ASVSLYPSNEDVSLAVSRILKSFNYPSASLIC-AKAECLLRLE 156

Query: 61  ELEVLLAKYSICIAIK 76
           EL          ++++
Sbjct: 157 ELVRGFLISKETLSVR 172

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376

 Score = 52.5 bits (125), Expect = 4e-09
 Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 5/99 (5%)

Query: 7   SPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLL 66
           +P         +  +  P       A++ +++   W   + +Y +S+ G+   + +    
Sbjct: 89  TPSFPTDGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144

Query: 67  AKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
           A+    +     +   +   ++  Y  +   L  K   R
Sbjct: 145 AEKKWQVTAI-NVGNINNDKKDETYRSLFQDLELKKERR 182

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384

 Score = 49.8 bits (118), Expect = 5e-08
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 12/105 (11%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           V F + S  +    +F    R         +A++ I+    W     IY +++ G+   +
Sbjct: 92  VCFITPSFPVDTSNQFVLQLRP-----ELQEALISIIDHYKWQTFVYIY-DADRGLSVLQ 145

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
            +    A+ +  +     L              ++ + L K + R
Sbjct: 146 RVLDTAAEKNWQVTAVNILTTTEEGYR------MLFQDLEKKKER 184

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Length = 389

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
            SF + S       +F    R          A++ ++    W     +Y ++  G    +
Sbjct: 94  TSFVTPSFPTDADVQFVIQMRP-----ALKGAILSLLSYYKWEKFVYLY-DTERGFSVLQ 147

Query: 61  ELEVLLAKYSICIAIKE 77
            +     + +  +  + 
Sbjct: 148 AIMEAAVQNNWQVTARS 164

>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A* Length = 386

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 1   VSFWSTSPEL-SNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAF 59
           ++  + +  +    +R ++  + +P+D    +A+ + + K G   V  I     YG   +
Sbjct: 117 MTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYY 176

Query: 60  EELEVLLAKYSICIAIKEK 78
           + L     K    +   E 
Sbjct: 177 KVLAAAAPKLGFELTTHEV 195

>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus} Length = 392

 Score = 46.3 bits (110), Expect = 7e-07
 Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 5   STSPELSNKQRFEYFTRTIPSDHHQVKAMVE-IVKKLGWSYVSIIYEESNYGVKAFEELE 63
           S   EL +    +Y      S   QV A++E I ++   + V+++   S +G    E+  
Sbjct: 105 SMHIELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDAR 164

Query: 64  VLLAKYSICIAIKE 77
               +  + I   +
Sbjct: 165 KAARELGLQIVDVQ 178

>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A Length = 356

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVE-IVKKLGWSYVSIIYEESNYGV--- 56
           ++  +T+P  + ++      RT   D  Q     + +      + V+II++++ YG    
Sbjct: 97  ITPAATNPVFT-ERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLA 155

Query: 57  KAFEE 61
              ++
Sbjct: 156 DETKK 160

>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A Length = 346

 Score = 44.6 bits (106), Expect = 3e-06
 Identities = 14/65 (21%), Positives = 36/65 (55%), Gaps = 5/65 (7%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVE-IVKKLGWSYVSIIYEESNYGV--- 56
           +S  +T+PEL+ ++ +++  RT   D  Q     + I++ +    ++II+++  YG    
Sbjct: 97  ISPGATNPELT-QRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLA 155

Query: 57  KAFEE 61
           ++ ++
Sbjct: 156 RSVQD 160

>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170} Length = 358

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 9/78 (11%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +S  +  P+    +   +  R I +   +       +   G++ V++I   +++G+ + +
Sbjct: 100 LSPTAAHPDYI--KISPWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQ 157

Query: 61  ELEVLLAKYSICIAIKEK 78
                       + + E+
Sbjct: 158 AFRKAFELRGGAVVVNEE 175

>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum} Length = 364

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 8/98 (8%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           V   + +  ++             S   ++  M+  +  +G + + ++Y+E   G +A  
Sbjct: 103 VGPATGASSMTTD---PLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159

Query: 61  ELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL 98
            +E  L  +++ I       ++            V KL
Sbjct: 160 GVERTLKAHALAITAMASYPRN-----TANVGPAVDKL 192

>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A Length = 375

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 8/64 (12%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYG---VK 57
           +   + +  ++         RT  ++    +A  + + K G      +  +   G   V 
Sbjct: 110 IVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVS 169

Query: 58  AFEE 61
            F++
Sbjct: 170 GFKK 173

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823

 Score = 41.3 bits (96), Expect = 4e-05
 Identities = 11/99 (11%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 7   SPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLL 66
           +P         +  +  P       A++ +++   W   + +Y +S+ G+   + +    
Sbjct: 89  TPSFPTDGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144

Query: 67  AKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR 105
           A+    +     +   +   ++  Y   + + L   + R
Sbjct: 145 AEKKWQVTAI-NVGNINNDKKDETYRS-LFQDLELKKER 181

>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum} Length = 387

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 27/152 (17%), Positives = 45/152 (29%), Gaps = 41/152 (26%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYG---VK 57
           ++    +  L+ ++   Y  R  PS + Q   +     KL  +  + I     YG   V 
Sbjct: 101 MASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVA 160

Query: 58  AFEELEVLLAKYSICIAIKEKLVKDSGVAEETA------YDDIVLKLL-TKP-------- 102
            F+E             +     + + VAE+            V  L   +P        
Sbjct: 161 RFKE------------LLLAARPEVTFVAEQWPALYKLDAGPTVQALQQAEPEGLFNVLF 208

Query: 103 -----------RARGLFKRLKLVKDSGVAEET 123
                      R RGLF   ++V       E 
Sbjct: 209 GADLPKFVREGRVRGLFAGRQVVSMLTGEPEY 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
3ks9_A	496	Mglur1, metabotropic glutamate receptor 1; glutama	99.87
3sm9_A	479	Mglur3, metabotropic glutamate receptor 3; structu	99.87
2e4u_A	555	Metabotropic glutamate receptor 3; G-protein-coupl	99.87
3mq4_A	481	Mglur7, metabotropic glutamate receptor 7; glutama	99.82
3qel_B	364	Glutamate [NMDA] receptor subunit epsilon-2; ION c	99.82
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	99.82
3qek_A	384	NMDA glutamate receptor subunit; amino terminal do	99.81
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	99.78
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	99.77
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	99.72
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	99.63
3hsy_A	376	Glutamate receptor 2; ligand-gated ION channel, sy	99.6
3o21_A	389	Glutamate receptor 3; periplasmatic binding protei	99.58
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	99.57
3saj_A	384	Glutamate receptor 1; rossman fold, ION channel, m	99.56
4gpa_A	389	Glutamate receptor 4; PBP fold, ligand-gated ION c	99.56
3n0w_A	379	ABC branched chain amino acid family transporter,	99.53
4f06_A	371	Extracellular ligand-binding receptor; PSI-biology	99.53
3i09_A	375	Periplasmic branched-chain amino acid-binding Pro;	99.53
3i45_A	387	Twin-arginine translocation pathway signal protei;	99.52
3h5l_A	419	Putative branched-chain amino acid ABC transporter	99.47
3n0x_A	374	Possible substrate binding protein of ABC transpo	99.46
4eyg_A	368	Twin-arginine translocation pathway signal; PSI-bi	99.46
4evq_A	375	Putative ABC transporter subunit, substrate-bindi	99.43
3ipc_A	356	ABC transporter, substrate binding protein (amino;	99.39
3lop_A	364	Substrate binding periplasmic protein; protein str	99.37
3td9_A	366	Branched chain amino acid ABC transporter, peripl	99.37
3eaf_A	391	ABC transporter, substrate binding protein; PSI2,	99.35
3sg0_A	386	Extracellular ligand-binding receptor; structural	99.34
1usg_A	346	Leucine-specific binding protein; leucine-binding	99.34
3lkb_A	392	Probable branched-chain amino acid ABC transporter	99.33
3hut_A	358	Putative branched-chain amino acid ABC transporter	99.3
3snr_A	362	Extracellular ligand-binding receptor; structural	99.25
4gnr_A	353	ABC transporter substrate-binding protein-branche	99.09
1pea_A	385	Amidase operon; gene regulator, receptor, binding	98.99
3ckm_A	327	YRAM (HI1655), LPOA; periplasmic-binding protein,	98.82
2h4a_A	325	YRAM (HI1655); perplasmic binding protein, lipopro	98.78
3ixl_A	240	Amdase, arylmalonate decarboxylase; enantioselecti	95.13
3bfj_A	387	1,3-propanediol oxidoreductase; opportunistic path	94.06
3ox4_A	383	Alcohol dehydrogenase 2; iron, NAD, oxidoreductase	93.95
1vlj_A	407	NADH-dependent butanol dehydrogenase; TM0820, stru	92.38
2xed_A	273	Putative maleate isomerase; nicotinic acid catabol	92.29
1rrm_A	386	Lactaldehyde reductase; structural genomics, dehyd	92.18
2qh8_A	302	Uncharacterized protein; conserved domain protein,	91.61
3lft_A	295	Uncharacterized protein; ABC, ATPase, cassette, L-	91.23
1o2d_A	371	Alcohol dehydrogenase, iron-containing; TM0920, st	91.05
2dgd_A	223	223AA long hypothetical arylmalonate decarboxylas;	90.31
2h3h_A	313	Sugar ABC transporter, periplasmic sugar-binding p	89.88
3uhj_A	387	Probable glycerol dehydrogenase; structural genomi	89.02
1mkz_A	172	Molybdenum cofactor biosynthesis protein B; MAD, W	88.96
3ce9_A	354	Glycerol dehydrogenase; NP_348253.1, 3-dehydroquin	88.56
3iwt_A	178	178AA long hypothetical molybdenum cofactor biosy	85.71
1jq5_A	370	Glycerol dehydrogenase; oxidoreductase, NAD, glyce	85.6
3brq_A	296	HTH-type transcriptional regulator ASCG; transcrip	85.09
2pjk_A	178	178AA long hypothetical molybdenum cofactor biosyn	83.69
3ksm_A	276	ABC-type sugar transport system, periplasmic COMP;	83.59
2fvy_A	309	D-galactose-binding periplasmic protein; periplasm	83.34
1y5e_A	169	Molybdenum cofactor biosynthesis protein B; struct	83.33
3d8u_A	275	PURR transcriptional regulator; APC91343.1, vibrio	83.28
3hl0_A	353	Maleylacetate reductase; structur genomics, PSI-2,	83.07
3gv0_A	288	Transcriptional regulator, LACI family; transcript	83.02
2qu7_A	288	Putative transcriptional regulator; structural gen	82.18
1dbq_A	289	Purine repressor; transcription regulation, DNA-bi	82.1
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	82.07
3gyb_A	280	Transcriptional regulators (LACI-family transcript	81.8
2h0a_A	276	TTHA0807, transcriptional regulator; repressor, st	81.44
1xvl_A	321	Mn transporter, MNTC protein; manganese, ABC-type	81.14
2rjo_A	332	Twin-arginine translocation pathway signal protei;	80.77
3brs_A	289	Periplasmic binding protein/LACI transcriptional;	80.29
3gbv_A	304	Putative LACI-family transcriptional regulator; NY	80.14
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	80.06

>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*

Probab=99.87  E-value=6.7e-22  Score=159.80  Aligned_cols=135  Identities=30%  Similarity=0.520  Sum_probs=113.9

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |||+++++.|+++.+||+||||.|++..|+.++++++++|||+||++|++|++||....+.|++++++.|+||++.+.++
T Consensus       156 Is~~a~~~~lsd~~~~p~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~  235 (496)
T 3ks9_A          156 IAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIY  235 (496)
T ss_dssp             EESSCCCGGGGCTTTCTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             ECCCcCCccccCccCCCceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEEC
Confidence            58899999999998899999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             CCCCCcchhhHHHHHHHHhcC-CCceEEEEeeE---------------------EeeeCCcchhh-----hhHHHHHHHh
Q psy12591         81 KDSGVAEETAYDDIVLKLLTK-PRARGLFKRLK---------------------LVKDSGVAEET-----AYDDIVLKLL  133 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~-~~arvii~~~~---------------------~~~~~g~~~~~-----~~~~~~~~~~  133 (144)
                      ...   .+.+++.++++|++. ++++|||++..                     ++..+||+...     ....++|.++
T Consensus       236 ~~~---~~~d~~~~l~~i~~~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~k~~~i~s~~w~~~~~~~~~~~~~~~G~l~  312 (496)
T 3ks9_A          236 SNA---GEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGIT  312 (496)
T ss_dssp             TTC---CHHHHHHHHHHHHTTTTTTCEEEEECCHHHHHHHHHHHHHHTCCSCCEEEECTTTTTCHHHHTTCHHHHTTCEE
T ss_pred             CCC---CHHHHHHHHHHHHhccCceEEEEEecChHHHHHHHHHHHHhCCCCcEEEEEechhccccccccccccccCceEE
Confidence            543   378999999999952 68999998742                     46677776532     2234566666


Q ss_pred             cCccc
Q psy12591        134 TKPRA  138 (144)
Q Consensus       134 ~~~~~  138 (144)
                      +.++.
T Consensus       313 ~~~~~  317 (496)
T 3ks9_A          313 IKLQS  317 (496)
T ss_dssp             EEECC
T ss_pred             EeccC
Confidence            55544

>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}

Probab=99.87  E-value=6.2e-22  Score=159.38  Aligned_cols=117  Identities=37%  Similarity=0.588  Sum_probs=104.9

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |||+++++.|+++..||+|||+.|++..|+.++++++++|||+||++|++|++||....+.|++++++.|+||++.+.++
T Consensus       144 Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~  223 (479)
T 3sm9_A          144 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVG  223 (479)
T ss_dssp             EESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred             ECCCcCCccccCcccCCCeEEeCCcHHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcC
Confidence            58899999999998899999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcchhhHHHHH-HHHhcCCCceEEEEee-------------------EEeeeCCcch
Q psy12591         81 KDSGVAEETAYDDIV-LKLLTKPRARGLFKRL-------------------KLVKDSGVAE  121 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l-~~lk~~~~arvii~~~-------------------~~~~~~g~~~  121 (144)
                      ...   .+.+++.++ +.|+ +++++|||+++                   .|+..+||+.
T Consensus       224 ~~~---~~~d~~~~l~~~i~-~s~a~vIi~~~~~~~~~~l~~~~~~~g~~~~wI~s~~w~~  280 (479)
T 3sm9_A          224 RSN---IRKSYDSVIRELLQ-KPNARVVVLFMRSDDSRELIAAASRANASFTWVASDGWGA  280 (479)
T ss_dssp             C-----CHHHHHHHHHHHHT-CTTCCEEEEECCHHHHHHHHHHHHHTTCCCEEEECTTTTT
T ss_pred             CCC---ChHHHHHHHHHHHh-cCCCeEEEEEcChHHHHHHHHHHHHhCCEEEEEEechhhc
Confidence            653   267899999 6677 78999999875                   3677888865

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*

Probab=99.87  E-value=1.4e-21  Score=159.56  Aligned_cols=133  Identities=34%  Similarity=0.545  Sum_probs=112.3

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |||+++++.|+++.+|||||||.|++..|+.++++++++|||+||++|++|++||....+.|++.+++.|+||++.+.++
T Consensus       145 Is~~a~~~~lsd~~~~p~~fr~~p~d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~  224 (555)
T 2e4u_A          145 ISYASTSAKLSDKSRYDYFARTVPPDFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVG  224 (555)
T ss_dssp             EESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred             EeCCcCCCccCCcccCCCceeeCCChHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeC
Confidence            57899999999988899999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee-------------------EEeeeCCcchhhh-----hHHHHHHHhcCc
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL-------------------KLVKDSGVAEETA-----YDDIVLKLLTKP  136 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~-------------------~~~~~~g~~~~~~-----~~~~~~~~~~~~  136 (144)
                      ...   ...+++.++++|+.++++||||++.                   .++..++|+....     .+.++|.+.+.+
T Consensus       225 ~~~---~~~~~~~~l~~i~~~s~a~vIi~~~~~~~~~~~~~~~~~~g~~~~~i~s~~~~~~~~~~~~~~~~~~G~l~~~~  301 (555)
T 2e4u_A          225 RSN---IRKSYDSVIRELLQKPNARVVVLFMRSDDSRELIAAANRVNASFTWVASDGWGAQESIVKGSEHVAYGAITLEL  301 (555)
T ss_dssp             TTC---CHHHHHHHHHHHHTCTTCCEEEEECCHHHHHHHHHHHHHTTCCCEEEECTTTTTCGGGTTTCHHHHTTCEEEEE
T ss_pred             CCC---ChHHHHHHHHHHhccCCCCEEEEEcCHHHHHHHHHHHHHhcCCeEEEEeccccccchhhccchhhcceEEEEEe
Confidence            643   2678999999997457899999874                   2566777776432     224555555444

>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*

Probab=99.82  E-value=2.1e-21  Score=156.09  Aligned_cols=110  Identities=35%  Similarity=0.653  Sum_probs=87.3

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhh-CceEEEEEecc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAK-YSICIAIKEKL   79 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~-~Gi~V~~~~~~   79 (144)
                      |||+++++.|+++..||+|||+.|++..|+.++++++++|||+||++|++|++||....+.|.+.+++ .|+||++.+.+
T Consensus       145 Is~~a~~~~lsd~~~~p~~fr~~psd~~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i  224 (481)
T 3mq4_A          145 ISYASTAPELSDDRRYDFFSRVVPPDSFQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRI  224 (481)
T ss_dssp             EESSCCCGGGGCTTTTTTEEESSCCTHHHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCC
T ss_pred             EccccCCccccCcccCCceEEecCchHHHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEc
Confidence            58899999999998999999999999999999999999999999999999999999999999999885 79999999888


Q ss_pred             cCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +.... ..+.++..++++|+.+++++|||++.
T Consensus       225 ~~~~~-~~~~d~~~~l~~i~~~s~a~vIi~~~  255 (481)
T 3mq4_A          225 PQERK-DRTIDFDRIIKQLLDTPNSRAVVIFA  255 (481)
T ss_dssp             CCC-------CCSHHHHCCCCC----CEEECC
T ss_pred             CCCCc-cchHHHHHHHHHHHhcCCCEEEEEEE
Confidence            76531 01227888999987447899999874

>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*

Probab=99.82  E-value=1.9e-20  Score=146.03  Aligned_cols=125  Identities=15%  Similarity=0.130  Sum_probs=93.5

Q ss_pred             CcccCCCC-CCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhC--c--eEEEE
Q psy12591          1 VSFWSTSP-ELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKY--S--ICIAI   75 (144)
Q Consensus         1 Is~~at~~-~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~--G--i~V~~   75 (144)
                      |||+++++ .|+++.+||+||||.|+|..|+.++++++++|||+||++|++|+ .   ..+.|.+.+++.  |  +|+.+
T Consensus        94 IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~-~---g~~~~~~~l~~~~~~~~ici~~  169 (364)
T 3qel_B           94 LGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF-P---GYQDFVNKIRSTIENSFVGWEL  169 (364)
T ss_dssp             EEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC-T---THHHHHHHHHHHHHTCSSCCEE
T ss_pred             EEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC-c---cHHHHHHHHHHHhhccccceEE
Confidence            57888888 89999899999999999999999999999999999999999974 3   334555555544  4  59988


Q ss_pred             EecccCCCCCcchhhHHHHH-HHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCccc
Q psy12591         76 KEKLVKDSGVAEETAYDDIV-LKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPRA  138 (144)
Q Consensus        76 ~~~~~~~~~~~~~~~~~~~l-~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  138 (144)
                      ...++...+   ..+++.++ ++|| ++++||||+++..     -....++..+.....+++.|
T Consensus       170 ~~~i~~~~~---~~~~~~~l~~~i~-~~~a~ViIv~~~~-----~~~~~ll~~a~~~g~~~~~y  224 (364)
T 3qel_B          170 EEVLLLDMS---LDDGDSKIQNQLK-KLQSPIILLYCTK-----EEATYIFEVANSVGLTGYGY  224 (364)
T ss_dssp             EEEEEECTT---SCSSSCHHHHHHT-TCCCSEEEEESCH-----HHHHHHHHHHHTTTCSSTTC
T ss_pred             EEEEccCCC---cccHHHHHHHHHH-ccCCcEEEEEcCH-----HHHHHHHHHHHHcCCCCCCe
Confidence            777665432   45677888 6888 7899999998741     12234455555555555533

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*

Probab=99.82  E-value=4.1e-20  Score=146.18  Aligned_cols=105  Identities=14%  Similarity=0.253  Sum_probs=94.5

Q ss_pred             CcccCCCCCCcCCC-CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchH---HHHHHHHHhhhCceEEEEE
Q psy12591          1 VSFWSTSPELSNKQ-RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVK---AFEELEVLLAKYSICIAIK   76 (144)
Q Consensus         1 Is~~at~~~ls~~~-~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~---~~~~~~~~l~~~Gi~V~~~   76 (144)
                      ||++++++.|+++. .||||||+.|++..++.++++++++|||+||++|++|++||+.   ..+.|.+.+++.|+||+..
T Consensus       112 is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~~~g~~~~~~~~~~~~~~~~~g~~v~~~  191 (441)
T 1jdp_A          112 LSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIY  191 (441)
T ss_dssp             EESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             EcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcCCcccchHHHHHHHHHHHHhcCcEEEEE
Confidence            57889999999987 7999999999999999999999999999999999999999999   9999999999999999987


Q ss_pred             ecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         77 EKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      +.++.+     +.+++.++++|+  +++||||+++.
T Consensus       192 ~~~~~~-----~~d~~~~l~~i~--~~~~vii~~~~  220 (441)
T 1jdp_A          192 SFDETK-----DLDLEDIVRNIQ--ASERVVIMCAS  220 (441)
T ss_dssp             EECTTS-----CCCHHHHHHHHH--HHCSEEEEESC
T ss_pred             EecCCc-----ccCHHHHHHHhh--cCCcEEEEecC
Confidence            766543     347899999998  67999998864

>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*

Probab=99.81  E-value=1.3e-19  Score=141.08  Aligned_cols=109  Identities=20%  Similarity=0.288  Sum_probs=88.5

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceE--------
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSIC--------   72 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~--------   72 (144)
                      ||++++++.++++..||+|||+.|++..|+.++++++++|||+||++|++|++||.+..+.|++.+++.|+.        
T Consensus        98 is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~~~~~~~~~~~~g~~v~~~~~~~  177 (384)
T 3qek_A           98 IGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAAQKKLETLLEGKESKSKKRNYEN  177 (384)
T ss_dssp             EESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHC-------------
T ss_pred             EecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHHHHHHHHHHHhccCccccccccc
Confidence            478888999999888999999999999999999999999999999999999999999999999999999973        


Q ss_pred             ---EEEE-------ecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         73 ---IAIK-------EKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        73 ---V~~~-------~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                         +.+.       +.++...  ..+.|++.+|++|| .+++|+||+++.
T Consensus       178 ~~~v~~~~~~~~~~~~v~~~~--~~~~d~~~~l~~i~-~~~~~vii~~~~  224 (384)
T 3qek_A          178 LDQLSYDNKRGPKADKVLQFE--PGTKNLTALLLEAK-ELEARVIILSAS  224 (384)
T ss_dssp             -CCSCCCCCCCCEEEEEEEEC--TTCSCCHHHHHHHH-TSSCCEEEEECC
T ss_pred             cceeeeccccCcccceecccC--CchhhHHHHHHHHH-hcCCcEEEEECC
Confidence               3332       2222111  02568999999999 789999999874

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*

Probab=99.78  E-value=8.7e-19  Score=138.16  Aligned_cols=121  Identities=21%  Similarity=0.281  Sum_probs=102.4

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      ||++++++.|+++..||||||+.|++..++.++++++++|||++|++|+++++||....+.|.+.+++.|+||+..+.++
T Consensus       113 is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~  192 (433)
T 4f11_A          113 LSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTGVLYGEDIEISDTESFS  192 (433)
T ss_dssp             EESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHSSSSSCEEEEEEEES
T ss_pred             EEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhHHHHHHHHHHHHHcCceEEEEeccC
Confidence            47888999999987899999999999999999999999999999999999999999999999999999999999988885


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcC
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTK  135 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~  135 (144)
                      .        |++.+|++|| .+++++||+++.     +-+...++.++.....++
T Consensus       193 ~--------d~~~~l~~i~-~~~~~vii~~~~-----~~~~~~~~~~a~~~g~~~  233 (433)
T 4f11_A          193 N--------DPCTSVKKLK-GNDVRIILGQFD-----QNMAAKVFCCAYEENMYG  233 (433)
T ss_dssp             S--------CCHHHHHHHH-HTTCCEEEEECC-----HHHHHHHHHHHHHTTCCS
T ss_pred             c--------CHHHHHHHHh-hCCCeEEEEeCc-----HHHHHHHHHHHHHcCCCC
Confidence            3        4678999999 689999999874     223334455544444443

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*

Probab=99.77  E-value=6.1e-19  Score=138.83  Aligned_cols=104  Identities=15%  Similarity=0.231  Sum_probs=89.9

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEE------EEeCCcchHHHHHHHHHhhh-CceEE
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSII------YEESNYGVKAFEELEVLLAK-YSICI   73 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii------~~~~~~g~~~~~~~~~~l~~-~Gi~V   73 (144)
                      ||++++++.|+++..||||||+.|++..++.++++++++|+|+||++|      +++++|| ...+.+.+.+.+ .|+||
T Consensus       105 is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~~~~~g-~~~~~~~~~~~~~~g~~v  183 (435)
T 1dp4_A          105 LTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCF-FIVEGLYMRVRERLNITV  183 (435)
T ss_dssp             EESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSCCHHH-HHHHHHHHHHHHHHCCEE
T ss_pred             EcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCCcchHH-HHHHHHHHHHHhhcCeEE
Confidence            578899999999878999999999999999999999999999999999      6777888 555677888887 99999


Q ss_pred             EEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         74 AIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      +..+.++.+     ..+++.+|++|| . ++|+||+++.
T Consensus       184 ~~~~~~~~~-----~~d~~~~l~~i~-~-~~~viv~~~~  215 (435)
T 1dp4_A          184 NHQEFVEGD-----PDHYPKLLRAVR-R-KGRVIYICSS  215 (435)
T ss_dssp             EEEEECTTC-----GGGHHHHHHHHH-H-HCSEEEEESC
T ss_pred             EEEEEecCc-----hhhHHHHHHHHH-h-hCceEEEecC
Confidence            988765332     578999999999 5 8999999874

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*

Probab=99.72  E-value=2.1e-17  Score=128.80  Aligned_cols=102  Identities=15%  Similarity=0.305  Sum_probs=90.6

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++++  .+||||+.|++..++.++++++++|||++|++++ +++||....+.+.+.+++.|+||+..+ ++
T Consensus        99 is~~~~~~~l~~~--~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~-~~  174 (395)
T 3h6g_A           99 IQTRWKHQVSDNK--DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIKAPSRYNLRLKIRQ-LP  174 (395)
T ss_dssp             EECSCCCCCTTCC--CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHTGGGTSSCEEEEEE-CC
T ss_pred             EeeccCccccccc--CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHHhhhcCCceEEEEE-eC
Confidence            4678888888875  6789999999999999999999999999999997 678999999999999999999998875 76


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      .+     +.||+.+|++|| .+++++|++++.
T Consensus       175 ~~-----~~d~~~~l~~i~-~~~~~vi~~~~~  200 (395)
T 3h6g_A          175 AD-----TKDAKPLLKEMK-RGKEFHVIFDCS  200 (395)
T ss_dssp             SS-----GGGGHHHHHHHH-HTTCCEEEEESC
T ss_pred             CC-----chhHHHHHHHHh-hcCCeEEEEECC
Confidence            55     578999999999 688999998864

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A

Probab=99.63  E-value=4.2e-16  Score=121.48  Aligned_cols=99  Identities=11%  Similarity=0.147  Sum_probs=78.4

Q ss_pred             cccCCCCCCcCCCCCCce--EEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecc
Q psy12591          2 SFWSTSPELSNKQRFEYF--TRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKL   79 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~f--fRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~   79 (144)
                      |++++.   +++..||+|  ||+.|++..|+.++++++++|||++|++|+++++||..+.+.+ +.+.+.|+||.... +
T Consensus       100 s~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~-~~~~~~g~~v~~~~-~  174 (393)
T 3om0_A          100 KVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV-RGFLISKETLSVRM-L  174 (393)
T ss_dssp             ECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH-HHHHHSSSCEEEEE-C
T ss_pred             eccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH-HhhhccCCeEEEEe-c
Confidence            455543   445579999  9999999999999999999999999999999999998876666 45778899997654 4


Q ss_pred             cCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      + +     +.|++.+|++|| .+++++||+++.
T Consensus       175 ~-~-----~~d~~~~l~~i~-~~~~~vii~~~~  200 (393)
T 3om0_A          175 D-D-----SRDPTPLLKEIR-DDKVSTIIIDAN  200 (393)
T ss_dssp             C-------CCCSHHHHHHHH-HHTCSEEEEESC
T ss_pred             C-C-----CCCHHHHHHHHH-hcCCeEEEEECC
Confidence            2 2     468999999999 688999998764

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A

Probab=99.60  E-value=3.5e-15  Score=116.00  Aligned_cols=92  Identities=11%  Similarity=0.228  Sum_probs=63.9

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI   94 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~   94 (144)
                      .++|+||+.|+   |+.++++++++|||++|++|+ |++||....+.|.+.+++.|+||+..+.++.... ..+.||+.+
T Consensus        97 ~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~~~~d~~~~  171 (376)
T 3hsy_A           97 THPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINND-KKDETYRSL  171 (376)
T ss_dssp             CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEEECTTCC------------
T ss_pred             cCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHhhhcCCeEEEEEecccccc-ccchhHHHH
Confidence            47889999876   899999999999999999999 8999999999999999999999998876643210 025789999


Q ss_pred             HHHHhcCCCceEEEEeeE
Q psy12591         95 VLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        95 l~~lk~~~~arvii~~~~  112 (144)
                      |++|| ..++++||+++.
T Consensus       172 l~~i~-~~~~~vii~~~~  188 (376)
T 3hsy_A          172 FQDLE-LKKERRVILDCE  188 (376)
T ss_dssp             ----------CEEEEESC
T ss_pred             HHHHh-hCCCeEEEEECC
Confidence            99999 688999998764

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A

Probab=99.58  E-value=1.6e-14  Score=113.02  Aligned_cols=88  Identities=7%  Similarity=0.206  Sum_probs=76.3

Q ss_pred             CCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH
Q psy12591         16 FEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV   95 (144)
Q Consensus        16 ~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l   95 (144)
                      .+|.||+.|+   |+.++++++++|||+||++|+ |++||....+.|.+.+++.|+||+..+.++...    +.||+.+|
T Consensus       107 ~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~----~~d~~~~l  178 (389)
T 3o21_A          107 VQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIMEAAVQNNWQVTARSVGNIKD----VQEFRRII  178 (389)
T ss_dssp             CSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHHHHHHTTCEEEEEECTTCCC----THHHHHHH
T ss_pred             CceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHHHhhcCCCeEEEEEecCCCC----cHHHHHHH
Confidence            4566777776   899999999999999999999 889999999999999999999999988775432    46899999


Q ss_pred             HHHhcCCCceEEEEeeE
Q psy12591         96 LKLLTKPRARGLFKRLK  112 (144)
Q Consensus        96 ~~lk~~~~arvii~~~~  112 (144)
                      ++|| .+++++||+++.
T Consensus       179 ~~ik-~~~~~vii~~~~  194 (389)
T 3o21_A          179 EEMD-RRQEKRYLIDCE  194 (389)
T ss_dssp             HHHH-TTTCCEEEEESC
T ss_pred             HHHH-hCCCeEEEEECC
Confidence            9999 688999998753

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=99.57  E-value=1.5e-14  Score=122.00  Aligned_cols=112  Identities=10%  Similarity=0.162  Sum_probs=90.1

Q ss_pred             CCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHH
Q psy12591         14 QRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD   93 (144)
Q Consensus        14 ~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~   93 (144)
                      ..+||+||+.|+   |+.++++++++|||+||++|+ +++||....+.+.+.+++.|+||+..+.++.+.. .++.|++.
T Consensus        96 ~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~-~~~~d~~~  170 (823)
T 3kg2_A           96 GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAAEKKWQVTAINVGNINND-KKDETYRS  170 (823)
T ss_dssp             SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHHHHTTCEEEEEECSSCCSS-STTTTTTT
T ss_pred             CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHhhccCCceEEEEeecCCCC-ccchhHHH
Confidence            358999999998   889999999999999999999 7889999999999999999999999988766521 12578999


Q ss_pred             HHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCc
Q psy12591         94 IVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKP  136 (144)
Q Consensus        94 ~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~  136 (144)
                      +|++|| .+++|+||+++.     +-+...++.++.....+++
T Consensus       171 ~l~~i~-~~~~~vii~~~~-----~~~~~~~~~~a~~~g~~~~  207 (823)
T 3kg2_A          171 LFQDLE-LKKERRVILDCE-----RDKVNDIVDQVITIGKHVK  207 (823)
T ss_dssp             HHHHTT-TTTCCEEEEECC-----HHHHHHHHHHHHHHTTTBT
T ss_pred             HHHHHH-hcCCeEEEEECC-----HHHHHHHHHHHHHcCcCCC
Confidence            999999 788999999874     2222344555554444444

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}

Probab=99.56  E-value=1.4e-14  Score=112.77  Aligned_cols=87  Identities=16%  Similarity=0.285  Sum_probs=76.9

Q ss_pred             CCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH
Q psy12591         16 FEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV   95 (144)
Q Consensus        16 ~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l   95 (144)
                      .+|+||+.|+   |+.++++++++|||++|++|+ +++||....+.|.+.+++.|+||+..+.++.+     +.||+.+|
T Consensus       105 ~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~-----~~d~~~~l  175 (384)
T 3saj_A          105 NQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVLDTAAEKNWQVTAVNILTTT-----EEGYRMLF  175 (384)
T ss_dssp             CTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHHHHTCEEEEEEGGGCC-----HHHHHHTT
T ss_pred             cCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHHHHhhhcCceEEEEEeccCC-----chhHHHHH
Confidence            5678888877   899999999999999999999 67999999999999999999999988855433     67899999


Q ss_pred             HHHhcCCCceEEEEeeE
Q psy12591         96 LKLLTKPRARGLFKRLK  112 (144)
Q Consensus        96 ~~lk~~~~arvii~~~~  112 (144)
                      ++|| .+++++||+++.
T Consensus       176 ~~ik-~~~~~vii~~~~  191 (384)
T 3saj_A          176 QDLE-KKKERLVVVDCE  191 (384)
T ss_dssp             TTCC-SCSEEEEEEECC
T ss_pred             HHHh-ccCCcEEEEEcC
Confidence            9999 689999998763

>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}

Probab=99.56  E-value=1.2e-14  Score=112.17  Aligned_cols=117  Identities=9%  Similarity=0.075  Sum_probs=85.5

Q ss_pred             cCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCC
Q psy12591          4 WSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDS   83 (144)
Q Consensus         4 ~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~   83 (144)
                      .+.++.++++..||+++|+.+     +.++++++++|+|+||++|++++.++. ..+.+.+.+.+.|+||+..+.++.. 
T Consensus        97 is~~~~~~~~~~~~~~~~~~~-----~~a~~~l~~~~~w~~vaii~~~d~~~~-~~~~~~~~~~~~g~~v~~~~~~~~~-  169 (389)
T 4gpa_A           97 ITPSFPTEGESQFVLQLRPSL-----RGALLSLLDHYEWNCFVFLYDTDRGYS-ILQAIMEKAGQNGWHVSAICVENFN-  169 (389)
T ss_dssp             EECSCCCSSCCSSEEECSCCC-----HHHHHHHHHHTTCCEEEEEECSTTCSH-HHHHHHHHHHTTTCEEEEEECTTCC-
T ss_pred             eeccccccccccCCccccCCH-----HHHHHHHHHHcCCcEEEEEEecchhhH-HHHHHHHHHHhcCceEEEEeecCCc-
Confidence            344455566666777777543     468999999999999999998877765 4567888999999999988776554 


Q ss_pred             CCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCcc
Q psy12591         84 GVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPR  137 (144)
Q Consensus        84 ~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  137 (144)
                          +.+++.+|+++| .+++++||+++.     .-....++.++.....+++.
T Consensus       170 ----~~d~~~~l~~i~-~~~~~vIv~~~~-----~~~~~~il~~a~~~g~~~~~  213 (389)
T 4gpa_A          170 ----DVSYRQLLEELD-RRQEKKFVIDCE-----IERLQNILEQIVSVGKHVKG  213 (389)
T ss_dssp             ----HHHHHHHHHHHH-HHTCCEEEEECC-----HHHHHHHHHHHHHHTCSBTT
T ss_pred             ----chhHHHHHHHhh-ccCCcEEEEEec-----hhHHHHHHHHHHHhCCCCCc
Confidence                689999999999 688999998764     22223444444444444443

>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}

Probab=99.53  E-value=2.5e-14  Score=110.73  Aligned_cols=105  Identities=10%  Similarity=0.043  Sum_probs=92.7

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++++..+|++||+.|++..++.++++++.++||++|++|+.+++||....+.|++.+++.|++|+..+.++
T Consensus       101 i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~  180 (379)
T 3n0w_A          101 FITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMNAAIRRELTAGGGQIVGSVRFP  180 (379)
T ss_dssp             EECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             EEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHHHHHHHHHHHcCCEEEEEEeCC
Confidence            35667778888766799999999999999999999998999999999999999999999999999999999999888887


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+     ..|++.++++|+ .+++++|+++.
T Consensus       181 ~~-----~~d~~~~l~~i~-~~~~d~v~~~~  205 (379)
T 3n0w_A          181 FE-----TQDFSSYLLQAK-ASGAQLIVSTS  205 (379)
T ss_dssp             TT-----CCCCHHHHHHHH-HHTCSEEEECC
T ss_pred             CC-----CCCHHHHHHHHH-HCCCCEEEEec
Confidence            65     357899999999 67899988764

>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*

Probab=99.53  E-value=2.2e-14  Score=111.14  Aligned_cols=103  Identities=16%  Similarity=0.186  Sum_probs=92.6

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++..  .||+||+.|++..++.+++.+++..+|+++++++.|++||....+.|++.+++.|++|+..+.++
T Consensus       100 i~~~a~~~~~~~~--~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~  177 (371)
T 4f06_A          100 VVMNAATSSITEK--SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETAFKKTFEAEGGKVVEAVRMP  177 (371)
T ss_dssp             EESSCCCGGGGGG--CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             cccccccchhccc--CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHHHHHHHHhcCCceEEEEecC
Confidence            3567778888764  68999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+     +.||+.+|++|| ..++++|+++.
T Consensus       178 ~~-----~~d~~~~l~~i~-~~~pd~v~~~~  202 (371)
T 4f06_A          178 LS-----TTDFGPIMQRIK-NSGADMIFTFL  202 (371)
T ss_dssp             TT-----CCCCHHHHHHHH-HHTCSEEEEEC
T ss_pred             cc-----cccHHHHHHHHH-hcCCCEEEEEe
Confidence            76     468999999999 68899887654

>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}

Probab=99.53  E-value=5e-14  Score=108.73  Aligned_cols=105  Identities=11%  Similarity=0.024  Sum_probs=92.6

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |+++++++.++++..+|++||+.|++..++.++++++.++||++|++|+.+++||....+.|++.+++.|++|+..+.++
T Consensus        99 i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~  178 (375)
T 3i09_A           99 INIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEKNTADVVKANGGKVLGEVRHP  178 (375)
T ss_dssp             EECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             EEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHHHHHHHHHHcCCEEeeeeeCC
Confidence            35567778888776799999999999999999999998999999999999999999999999999999999999888887


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+     ..|++.++++|+ ..++++|+++.
T Consensus       179 ~~-----~~d~~~~l~~i~-~~~~d~v~~~~  203 (375)
T 3i09_A          179 LS-----ASDFSSFLLQAQ-SSKAQILGLAN  203 (375)
T ss_dssp             TT-----CSCCHHHHHHHH-HTCCSEEEEEC
T ss_pred             CC-----CccHHHHHHHHH-hCCCCEEEEec
Confidence            65     457899999999 67899988764

>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}

Probab=99.52  E-value=4.9e-14  Score=109.35  Aligned_cols=104  Identities=19%  Similarity=0.163  Sum_probs=91.6

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhC--ceEEEEEecc
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKY--SICIAIKEKL   79 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~--Gi~V~~~~~~   79 (144)
                      ++.++++.+++...+|++||+.|++..++.++++++.+++|++|++|+.+++||+...+.|++.+++.  |++++..+.+
T Consensus       102 ~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~  181 (387)
T 3i45_A          102 ASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWP  181 (387)
T ss_dssp             ECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred             ecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecC
Confidence            45666777776667999999999999999999999999999999999999999999999999999998  9999888877


Q ss_pred             cCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +.+     ..+++.++++|+ ..++++|++++
T Consensus       182 ~~~-----~~d~~~~~~~i~-~~~~d~v~~~~  207 (387)
T 3i45_A          182 ALY-----KLDAGPTVQALQ-QAEPEGLFNVL  207 (387)
T ss_dssp             CTT-----CCCHHHHHHHHH-HTCCSEEEECC
T ss_pred             CCC-----CcCHHHHHHHHH-hCCCCEEEEcC
Confidence            765     458999999999 67899988875

>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}

Probab=99.47  E-value=1.3e-13  Score=108.00  Aligned_cols=92  Identities=12%  Similarity=0.114  Sum_probs=83.7

Q ss_pred             CCCCCceEEecCCchHHHHHHHHHHHhC--------CCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCC
Q psy12591         13 KQRFEYFTRTIPSDHHQVKAMVEIVKKL--------GWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSG   84 (144)
Q Consensus        13 ~~~~p~ffRt~p~d~~~~~a~~~ll~~f--------~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~   84 (144)
                      ...|+++||+.|++..++.+++++++++        +|++|++|+++++||+...+.|++.+++.|++|+..+.++.+  
T Consensus       127 ~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~--  204 (419)
T 3h5l_A          127 PDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIP--  204 (419)
T ss_dssp             TTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSS--
T ss_pred             cccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCC--
Confidence            3468999999999999999999999876        899999999999999999999999999999999998888765  


Q ss_pred             CcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         85 VAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        85 ~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                         ..|++.++++|+ ..++++|++.
T Consensus       205 ---~~d~~~~l~~i~-~~~~d~v~~~  226 (419)
T 3h5l_A          205 ---VSDWGPTLAKLR-ADPPAVIVVT  226 (419)
T ss_dssp             ---CSCCHHHHHHHH-HSCCSEEEEC
T ss_pred             ---CccHHHHHHHHH-hcCCCEEEEc
Confidence               468999999999 6789998875

>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B

Probab=99.46  E-value=8.9e-14  Score=107.63  Aligned_cols=102  Identities=13%  Similarity=0.172  Sum_probs=88.9

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      ++.++++.++++..+||+||+.|++..++.+++.++++++| ++++|+.+++||....+.|++.+++.|++|+..+.++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~  180 (374)
T 3n0x_A          102 VEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAAFKEALAKTGATLATEEYVPT  180 (374)
T ss_dssp             ECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHHHHHHHTTTTCEEEEEEEECT
T ss_pred             EcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHHHHHHHHHcCCEEeeeecCCC
Confidence            34566777887766899999999999999999988889998 79999999999999999999999999999999888876


Q ss_pred             CCCCcchhhHHHHHHHHhcCCC-----ceEEEEe
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPR-----ARGLFKR  110 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~-----arvii~~  110 (144)
                      +     ..||+.++++|+ ..+     +++|++.
T Consensus       181 ~-----~~d~~~~l~~i~-~~~~~~~~~d~v~~~  208 (374)
T 3n0x_A          181 T-----TTDFTAVGQRLF-DALKDKPGKKIIWVI  208 (374)
T ss_dssp             T-----CCCCHHHHHHHH-HHHTTCSSEEEEEEC
T ss_pred             C-----CccHHHHHHHHH-hcCCCCCCCCEEEEE
Confidence            5     468999999999 566     8888776

>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*

Probab=99.46  E-value=3.6e-13  Score=103.35  Aligned_cols=102  Identities=11%  Similarity=0.090  Sum_probs=88.5

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      +++++++.++++  +|++||+.|++..++.++++++.++||++|++|+.++.+|....+.|.+.+++.|++++..+.++.
T Consensus       101 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~~~~~l~~~g~~v~~~~~~~~  178 (368)
T 4eyg_A          101 VMAAGTSIITER--SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAFFKERFTAGGGEIVEEIKVPL  178 (368)
T ss_dssp             ESSCCCGGGGGG--CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECS
T ss_pred             eccCCChhhccC--CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence            455556666654  899999999999999999999999999999999999999999999999999999999988887776


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +     ..++..++++|+ ..++++|++++
T Consensus       179 ~-----~~d~~~~~~~l~-~~~~d~v~~~~  202 (368)
T 4eyg_A          179 A-----NPDFAPFLQRMK-DAKPDAMFVFV  202 (368)
T ss_dssp             S-----SCCCHHHHHHHH-HHCCSEEEEEC
T ss_pred             C-----CCcHHHHHHHHH-hcCCCEEEEec
Confidence            5     357889999999 57789998854

>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A

Probab=99.43  E-value=6.7e-13  Score=102.05  Aligned_cols=104  Identities=6%  Similarity=-0.021  Sum_probs=90.2

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      ++.++++.++++..+|++||+.|++..++..+++++.++||++|++|+.++.+|....+.+++.+++.|++++..+.++.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~  190 (375)
T 4evq_A          111 VPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVSGFKKSFTAGKGEVVKDITIAF  190 (375)
T ss_dssp             ESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECT
T ss_pred             ecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHHHHHHHHHHHcCCeEEEEEecCC
Confidence            45666777877766999999999999999999999999999999999999999999999999999999999988777765


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +     ..++...+++|+ ..++++|++++
T Consensus       191 ~-----~~d~~~~~~~l~-~~~~dai~~~~  214 (375)
T 4evq_A          191 P-----DVEFQSALAEIA-SLKPDCVYAFF  214 (375)
T ss_dssp             T-----CCCCHHHHHHHH-HHCCSEEEEEC
T ss_pred             C-----CccHHHHHHHHH-hcCCCEEEEec
Confidence            5     357888999998 56788888854

>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A

Probab=99.39  E-value=6.1e-13  Score=101.74  Aligned_cols=103  Identities=14%  Similarity=0.121  Sum_probs=87.7

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHH-HHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEI-VKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~l-l~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      ++.++++.++++ .+|++||+.|++..++.+++++ ++++||++|++|+.+++||....+.+++.+++.|++++..+.++
T Consensus        98 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~  176 (356)
T 3ipc_A           98 TPAATNPVFTER-GLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEVMYEGVN  176 (356)
T ss_dssp             ESSCCCGGGGSS-CCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred             ecCCCCcHhhcC-CCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeeC
Confidence            456667777765 4899999999999999999995 56789999999999999999999999999999999998777776


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+     ..++...+++|+ ..++++|+++.
T Consensus       177 ~~-----~~d~~~~~~~l~-~~~~d~v~~~~  201 (356)
T 3ipc_A          177 VG-----DKDFSALISKMK-EAGVSIIYWGG  201 (356)
T ss_dssp             TT-----CCCCHHHHHHHH-HTTCCEEEEES
T ss_pred             CC-----CCCHHHHHHHHH-hcCCCEEEEcc
Confidence            54     457889999998 57889888764

>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}

Probab=99.37  E-value=7.1e-13  Score=101.87  Aligned_cols=101  Identities=15%  Similarity=0.230  Sum_probs=87.1

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      ++.++++.+++   +|++||+.|++..++..+++++..+||++|++|+.+++||....+.+++.+++.|+++...+.++.
T Consensus       104 ~~~~~~~~~~~---~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~  180 (364)
T 3lop_A          104 GPATGASSMTT---DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAITAMASYPR  180 (364)
T ss_dssp             SCSCCCGGGGS---CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCSEEEEECT
T ss_pred             EcccCcHhhcc---CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEEEEEEecC
Confidence            44555555654   899999999999999999999999999999999999999999999999999999999987777765


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +     ..++..++++|+ ..++++|+++.
T Consensus       181 ~-----~~d~~~~~~~l~-~~~~d~v~~~~  204 (364)
T 3lop_A          181 N-----TANVGPAVDKLL-AADVQAIFLGA  204 (364)
T ss_dssp             T-----SCCCHHHHHHHH-HSCCSEEEEES
T ss_pred             C-----CccHHHHHHHHH-hCCCCEEEEec
Confidence            5     457889999999 57889988864

>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}

Probab=99.37  E-value=2e-12  Score=99.30  Aligned_cols=101  Identities=15%  Similarity=0.120  Sum_probs=85.4

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHH-HhCCCcEEEEEEE-eCCcchHHHHHHHHHhhhCceEEEEEecc
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIV-KKLGWSYVSIIYE-ESNYGVKAFEELEVLLAKYSICIAIKEKL   79 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll-~~f~W~~Vaii~~-~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~   79 (144)
                      ++.++++.+++  .+|++||+.|++..++.++++++ +++||++|++|+. +++||....+.|.+.+++.|+++.... +
T Consensus       110 ~~~~~~~~~~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~-~  186 (366)
T 3td9_A          110 TPASTNPLVTQ--GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVF-F  186 (366)
T ss_dssp             ESSCCCGGGTT--TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEE-E
T ss_pred             ecCCCCccccC--CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEE-e
Confidence            45556666654  48999999999999999999988 6689999999987 678999999999999999999998887 7


Q ss_pred             cCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +.+     ..++...+++|+ ..++++|++..
T Consensus       187 ~~~-----~~d~~~~~~~l~-~~~~d~v~~~~  212 (366)
T 3td9_A          187 RSG-----DQDFSAQLSVAM-SFNPDAIYITG  212 (366)
T ss_dssp             CTT-----CCCCHHHHHHHH-HTCCSEEEECS
T ss_pred             CCC-----CccHHHHHHHHH-hcCCCEEEEcc
Confidence            655     457889999999 67899998853

>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}

Probab=99.35  E-value=3e-12  Score=99.46  Aligned_cols=91  Identities=10%  Similarity=0.097  Sum_probs=82.2

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHh-CCCcEEEEEEE-eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKK-LGWSYVSIIYE-ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYD   92 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~-f~W~~Vaii~~-~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~   92 (144)
                      .+|++||+.|++..++..+++++.. +||++|++|+. +++||....+.+++.+++.|++++..+.++.+     ..++.
T Consensus       113 ~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~-----~~d~~  187 (391)
T 3eaf_A          113 VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRSPIGAIKKAAPSLGLQVVGDYDLPLR-----ATEAD  187 (391)
T ss_dssp             TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHTTHHHHHHHTGGGTEEEEEEEECCTT-----CCHHH
T ss_pred             CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHHHHHHHHHHHHHcCCceeeeeccCCC-----CcCHH
Confidence            4899999999999999999998866 79999999999 99999999999999999999999988888765     46899


Q ss_pred             HHHHH--HhcCCCceEEEEee
Q psy12591         93 DIVLK--LLTKPRARGLFKRL  111 (144)
Q Consensus        93 ~~l~~--lk~~~~arvii~~~  111 (144)
                      .++++  |+ ..++++|++..
T Consensus       188 ~~~~~~~l~-~~~~dav~~~~  207 (391)
T 3eaf_A          188 AERIAREML-AADPDYVWCGN  207 (391)
T ss_dssp             HHHHHHHHH-TTCCSEEEECS
T ss_pred             HHHHHHHHH-HcCCCEEEEec
Confidence            99999  99 68899998865

>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*

Probab=99.34  E-value=2.4e-12  Score=99.01  Aligned_cols=104  Identities=16%  Similarity=0.262  Sum_probs=87.5

Q ss_pred             cccCCCCCCcC-CCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          2 SFWSTSPELSN-KQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         2 s~~at~~~ls~-~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      ++.++++.+++ ...+|++||+.|++..++..+++++..+||++|++|+.++.||....+.+++.+++.|++++..+.++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~  197 (386)
T 3sg0_A          118 TMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYKVLAAAAPKLGFELTTHEVYA  197 (386)
T ss_dssp             ECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEECCCEEEC
T ss_pred             EecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEEeeC
Confidence            34445555553 34589999999999999999999999999999999999999999999999999999999998777676


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+     ..++...+++++ ..++++|+++.
T Consensus       198 ~~-----~~d~~~~~~~~~-~~~~dav~~~~  222 (386)
T 3sg0_A          198 RS-----DASVTGQVLKII-ATKPDAVFIAS  222 (386)
T ss_dssp             TT-----CSCCHHHHHHHH-HTCCSEEEEEC
T ss_pred             CC-----CCcHHHHHHHHH-hcCCCEEEEec
Confidence            55     357888999998 57889888765

>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A

Probab=99.34  E-value=3.1e-12  Score=97.18  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=85.4

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHH-HhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIV-KKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll-~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      ++.++++.++++. +|++||+.|++..++..+++++ +++||++|++|+.++.||....+.|++.+++.|+++...+.++
T Consensus        98 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~  176 (346)
T 1usg_A           98 SPGATNPELTQRG-YQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGIT  176 (346)
T ss_dssp             ECCCCCGGGGSSC-CSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             eeCCCChHHhcCC-CCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHHHHHHHcCCEEEEEeccC
Confidence            4455566676653 8999999999999999999987 5689999999999888999999999999999999998777675


Q ss_pred             CCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         81 KDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+     ..++...+++|+ ..++++|+++.
T Consensus       177 ~~-----~~d~~~~~~~l~-~~~~d~i~~~~  201 (346)
T 1usg_A          177 AG-----EKDFSALIARLK-KENIDFVYYGG  201 (346)
T ss_dssp             TT-----CCCCHHHHHHHH-HTTCCEEEEES
T ss_pred             CC-----CcCHHHHHHHHH-hcCCCEEEEcC
Confidence            54     346778899998 56788888764

>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}

Probab=99.33  E-value=2.7e-12  Score=99.51  Aligned_cols=98  Identities=13%  Similarity=0.149  Sum_probs=84.2

Q ss_pred             CCCcCCCCCCceEEecCCchHHHHHHHHHHHh-CCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCc
Q psy12591          8 PELSNKQRFEYFTRTIPSDHHQVKAMVEIVKK-LGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVA   86 (144)
Q Consensus         8 ~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~-f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~   86 (144)
                      +.+.+...+|++||+.|++..++..+++++.. +||++|++|+.+++||....+.+++.+++.|++++..+.++.+    
T Consensus       108 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~----  183 (392)
T 3lkb_A          108 IELIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVEDARKAARELGLQIVDVQEVGSG----  183 (392)
T ss_dssp             GGGGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHHHHHHHHHHHTCEEEEEEECCTT----
T ss_pred             hhhccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHHHHHHHHHHHcCCeEEEEEeeCCC----
Confidence            33555456899999999999999999998765 7999999999999999999999999999999999888877665    


Q ss_pred             chhhHHHHHHHHhcCCCceEEEEee
Q psy12591         87 EETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        87 ~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                       ..+++.++++|+ ..++++|+++.
T Consensus       184 -~~d~~~~~~~l~-~~~~dav~~~~  206 (392)
T 3lkb_A          184 -NLDNTALLKRFE-QAGVEYVVHQN  206 (392)
T ss_dssp             -CCCCHHHHHHHH-HTTCCEEEEES
T ss_pred             -CcCHHHHHHHHH-hcCCCEEEEec
Confidence             457889999999 57899988754

>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}

Probab=99.30  E-value=9e-12  Score=95.27  Aligned_cols=102  Identities=11%  Similarity=0.215  Sum_probs=86.4

Q ss_pred             cccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccC
Q psy12591          2 SFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVK   81 (144)
Q Consensus         2 s~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~   81 (144)
                      ++.++++.+++..  |++||+.|++..++..+++++...||++|++|+.++.+|....+.+++.+++.|+++.....++.
T Consensus       101 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~  178 (358)
T 3hut_A          101 SPTAAHPDYIKIS--PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPP  178 (358)
T ss_dssp             ESSCCCGGGTTSC--TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECT
T ss_pred             ecCCCCcccccCC--CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCC
Confidence            3455666676543  99999999999999999999888899999999999999999999999999999999988777765


Q ss_pred             CCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         82 DSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        82 ~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +     ..++...+++|+ ..++++|+++.
T Consensus       179 ~-----~~~~~~~~~~l~-~~~~d~i~~~~  202 (358)
T 3hut_A          179 G-----NRRFDDVIDEIE-DEAPQAIYLAM  202 (358)
T ss_dssp             T-----CCCCHHHHHHHH-HHCCSEEEEES
T ss_pred             C-----CccHHHHHHHHH-hcCCCEEEEcc
Confidence            4     457888999998 56788888764

>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}

Probab=99.09  E-value=4.9e-10  Score=85.59  Aligned_cols=100  Identities=17%  Similarity=0.129  Sum_probs=78.2

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCC-CcEEEEEEEe-CCcchHHHHHHHHHhhhCceEEEEEec
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLG-WSYVSIIYEE-SNYGVKAFEELEVLLAKYSICIAIKEK   78 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~-W~~Vaii~~~-~~~g~~~~~~~~~~l~~~Gi~V~~~~~   78 (144)
                      |+++++++.+++.  ++|+||+.|++..++.+++.++...+ +++++++..+ ++||.+..+.+.+.   .|++++..+.
T Consensus       103 i~~~~~~~~l~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~~---~g~~vv~~~~  177 (353)
T 4gnr_A          103 ISPSATQDGLTKG--QDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGIAKSFRES---YKGEIVADET  177 (353)
T ss_dssp             EESSCCCTTTTTT--CTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHHHHHHHHH---CCSEEEEEEE
T ss_pred             EeecccccccccC--CccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHHHHHHHHH---cCCEEEEEEe
Confidence            4667778888753  78999999999999999999886554 5555555554 45888877776654   4788988888


Q ss_pred             ccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         79 LVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        79 ~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      ++.+     +.||+.++++|| ..++++|++..
T Consensus       178 ~~~~-----~~d~~~~l~~i~-~~~~d~v~~~~  204 (353)
T 4gnr_A          178 FVAG-----DTDFQAALTKMK-GKDFDAIVVPG  204 (353)
T ss_dssp             ECTT-----CCCCHHHHHHHH-TSCCSEEECCS
T ss_pred             eCCC-----CCCHHHHHHHHH-hcCCCEEEEec
Confidence            8876     468999999999 78999998764

>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A

Probab=98.99  E-value=4.8e-09  Score=81.11  Aligned_cols=93  Identities=10%  Similarity=0.036  Sum_probs=78.8

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI   94 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~   94 (144)
                      .+|++||+.+++..++..+++++...+|++|++|+.++.++....+.|++.+++.|+++...+.++...   ...+++..
T Consensus       113 ~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~---~~~d~~~~  189 (385)
T 1pea_A          113 YSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYP---SDDDLQRA  189 (385)
T ss_dssp             CCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECSSC---CHHHHHHH
T ss_pred             CCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEEeecCCC---CcchHHHH
Confidence            368999999999999999999998889999999999888999999999999999999988766565421   26789999


Q ss_pred             HHHHhcCCCceEEEEee
Q psy12591         95 VLKLLTKPRARGLFKRL  111 (144)
Q Consensus        95 l~~lk~~~~arvii~~~  111 (144)
                      +++|+ ..++++|++..
T Consensus       190 ~~~l~-~~~pdaI~~~~  205 (385)
T 1pea_A          190 VERIY-QARADVVFSTV  205 (385)
T ss_dssp             HHHHH-HHTCSEEEEEC
T ss_pred             HHHHH-HCCCCEEEEec
Confidence            99998 46788887754

>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1

Probab=98.82  E-value=9.2e-09  Score=78.29  Aligned_cols=89  Identities=8%  Similarity=-0.048  Sum_probs=77.2

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI   94 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~   94 (144)
                      ..|++||+.+++..++..+++++...|++++++++.+++||+...+.|++.+++.|++|+..+.++..       +....
T Consensus        97 ~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~~~~~~Gg~vv~~~~~~~~-------~~~~~  169 (327)
T 3ckm_A           97 AIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP-------ADVTY  169 (327)
T ss_dssp             CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST-------THHHH
T ss_pred             cCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHHHHHHCCCeEEEEEECCCC-------chhhH
Confidence            36799999999999999999999888999999999999999999999999999999999988888654       23356


Q ss_pred             HHHHhcCCCceEEEEee
Q psy12591         95 VLKLLTKPRARGLFKRL  111 (144)
Q Consensus        95 l~~lk~~~~arvii~~~  111 (144)
                      +.+++ ..++++|++..
T Consensus       170 ~~~~~-~~~~dai~~~~  185 (327)
T 3ckm_A          170 FVQEN-NSNTTALYAVA  185 (327)
T ss_dssp             HHHHS-CTTCCEEEECC
T ss_pred             HHHHh-ccCCcEEEEEc
Confidence            66777 67888888754

>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*

Probab=95.13  E-value=0.26  Score=35.86  Aligned_cols=84  Identities=17%  Similarity=0.160  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCC----CcchhhHHHHHHH-H-hcC
Q psy12591         28 HQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSG----VAEETAYDDIVLK-L-LTK  101 (144)
Q Consensus        28 ~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~----~~~~~~~~~~l~~-l-k~~  101 (144)
                      ..+.+.+..++..|-++|+++.   .|.....+.+++.+++.|+.+...........    ..+...+.+.+.+ + + .
T Consensus       103 ~~~~A~~~al~~~g~~rvgllt---py~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~  178 (240)
T 3ixl_A          103 TMSTAVLNGLRALGVRRVALAT---AYIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEA-A  178 (240)
T ss_dssp             EHHHHHHHHHHHTTCSEEEEEE---SSCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHT-S
T ss_pred             CHHHHHHHHHHHhCCCEEEEEe---CChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhc-C
Confidence            3567888888999999999997   38888888899999999999876554322110    0135578888888 7 6 6


Q ss_pred             CCceEEEEeeEEee
Q psy12591        102 PRARGLFKRLKLVK  115 (144)
Q Consensus       102 ~~arvii~~~~~~~  115 (144)
                      ++++.||+-++.+.
T Consensus       179 ~~adaivL~CT~l~  192 (240)
T 3ixl_A          179 PDSDGILLSSGGLL  192 (240)
T ss_dssp             TTCSEEEEECTTSC
T ss_pred             CCCCEEEEeCCCCc
Confidence            89999999887654

>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}

Probab=94.06  E-value=0.24  Score=38.37  Aligned_cols=77  Identities=13%  Similarity=0.088  Sum_probs=57.1

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcch--HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEE
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGV--KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFK  109 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~--~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~  109 (144)
                      .+.++++.+|.+++.+|++...+..  +..+.+.+.|++.|+++.....+.+++   +.+.+.+.+..++ ..+++.||.
T Consensus        23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p---~~~~v~~~~~~~~-~~~~d~IIa   98 (387)
T 3bfj_A           23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNP---KDTNVRDGLAVFR-REQCDIIVT   98 (387)
T ss_dssp             GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSC---BHHHHHHHHHHHH-HTTCCEEEE
T ss_pred             HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCC---CHHHHHHHHHHHH-hcCCCEEEE
Confidence            3556777889999999887665555  478889999999998875444555554   4778888888888 577888887


Q ss_pred             eeE
Q psy12591        110 RLK  112 (144)
Q Consensus       110 ~~~  112 (144)
                      ...
T Consensus        99 vGG  101 (387)
T 3bfj_A           99 VGG  101 (387)
T ss_dssp             EES
T ss_pred             eCC
Confidence            754

>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*

Probab=93.95  E-value=0.13  Score=39.94  Aligned_cols=77  Identities=12%  Similarity=0.041  Sum_probs=57.4

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++++.+|.+++.+|++..-...+..+.+.+.|++.|+.+.....+.+++   +.+.+.+.+..++ ..+++.||-..
T Consensus        21 ~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIavG   96 (383)
T 3ox4_A           21 KAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNP---TVTAVLEGLKILK-DNNSDFVISLG   96 (383)
T ss_dssp             HHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSC---BHHHHHHHHHHHH-HHTCSEEEEEE
T ss_pred             HHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCC---CHHHHHHHHHHHH-hcCcCEEEEeC
Confidence            4456678889999999987653333467889999999998876555566665   4778888888888 56788888765


Q ss_pred             E
Q psy12591        112 K  112 (144)
Q Consensus       112 ~  112 (144)
                      .
T Consensus        97 G   97 (383)
T 3ox4_A           97 G   97 (383)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2

Probab=92.38  E-value=0.67  Score=36.18  Aligned_cols=77  Identities=13%  Similarity=0.074  Sum_probs=55.4

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcch-HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGV-KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~-~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      .+.++++.+|.+++.+|+++...-. +..+.+.+.|++.|+.+.....+.+++   +.+.+.+.+..++ ..+++.||..
T Consensus        33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIav  108 (407)
T 1vlj_A           33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNP---VLSKVHEAVEVAK-KEKVEAVLGV  108 (407)
T ss_dssp             GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSC---BHHHHHHHHHHHH-HTTCSEEEEE
T ss_pred             HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCC---CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            3556777889899999886444433 367888899999998775444444444   4678888888888 5778888877


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus       109 GG  110 (407)
T 1vlj_A          109 GG  110 (407)
T ss_dssp             ES
T ss_pred             CC
Confidence            53

>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A

Probab=92.29  E-value=2.5  Score=31.08  Aligned_cols=82  Identities=15%  Similarity=0.037  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCC----CcchhhHHHHHHHHhcCCCce
Q psy12591         30 VKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSG----VAEETAYDDIVLKLLTKPRAR  105 (144)
Q Consensus        30 ~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~----~~~~~~~~~~l~~lk~~~~ar  105 (144)
                      +.+++..++..|-++|+++.   .|.....+.+++.+++.|+.+...........    ..+...+.+.+.++. ..+++
T Consensus       134 ~~A~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~-~~gad  209 (273)
T 2xed_A          134 AGALVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLD-LSEVD  209 (273)
T ss_dssp             HHHHHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSC-CTTCS
T ss_pred             HHHHHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHh-hCCCC
Confidence            56667777778889999995   56666777888999999998765443322100    012456778888886 68999


Q ss_pred             EEEEe-eEEee
Q psy12591        106 GLFKR-LKLVK  115 (144)
Q Consensus       106 vii~~-~~~~~  115 (144)
                      +||+- ++.+.
T Consensus       210 aIvLg~CT~l~  220 (273)
T 2xed_A          210 ALVISCAVQMP  220 (273)
T ss_dssp             EEEEESSSSSC
T ss_pred             EEEEcCCCCcc
Confidence            99998 87654

>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*

Probab=92.18  E-value=0.28  Score=37.97  Aligned_cols=77  Identities=14%  Similarity=0.110  Sum_probs=55.9

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++++.++.+++.++++...+..+..+.+.+.|++.|+.+.....+.+++   +.+.+.+.+..++ ..+++.||...
T Consensus        21 ~l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p---~~~~v~~~~~~~~-~~~~d~IIavG   96 (386)
T 1rrm_A           21 ALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNP---TITVVKEGLGVFQ-NSGADYLIAIG   96 (386)
T ss_dssp             GHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSC---BHHHHHHHHHHHH-HHTCSEEEEEE
T ss_pred             HHHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCC---CHHHHHHHHHHHH-hcCcCEEEEeC
Confidence            3556677778899988886544333478888999999998876555565554   4778888888888 56788888775


Q ss_pred             E
Q psy12591        112 K  112 (144)
Q Consensus       112 ~  112 (144)
                      .
T Consensus        97 G   97 (386)
T 1rrm_A           97 G   97 (386)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}

Probab=91.23  E-value=1.7  Score=31.54  Aligned_cols=73  Identities=14%  Similarity=0.211  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHhC--CCcEEEEEEEeCCc-chHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCce
Q psy12591         29 QVKAMVEIVKKL--GWSYVSIIYEESNY-GVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRAR  105 (144)
Q Consensus        29 ~~~a~~~ll~~f--~W~~Vaii~~~~~~-g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~ar  105 (144)
                      -+...+++|...  |-++|++++...+. +....+.+++++++.|+.+......  .     ..+....+++|.  .+..
T Consensus       118 ~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~~~~~~~--~-----~~~~~~~~~~l~--~~~d  188 (295)
T 3lft_A          118 PAQQQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTVETFAVP--S-----TNEIASTVTVMT--SKVD  188 (295)
T ss_dssp             CHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEES--S-----GGGHHHHHHHHT--TTCS
T ss_pred             cHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEEEEEecC--C-----HHHHHHHHHHHH--hcCC
Confidence            355666777666  89999999987553 4556788999999999987654322  1     245667788886  3566


Q ss_pred             EEEEe
Q psy12591        106 GLFKR  110 (144)
Q Consensus       106 vii~~  110 (144)
                      +|++.
T Consensus       189 ai~~~  193 (295)
T 3lft_A          189 AIWVP  193 (295)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            77654

>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*

Probab=91.05  E-value=1.4  Score=33.87  Aligned_cols=75  Identities=13%  Similarity=0.087  Sum_probs=54.5

Q ss_pred             HHHHHHhCCCcEEEEEEEeCCcch-HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         33 MVEIVKKLGWSYVSIIYEESNYGV-KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        33 ~~~ll~~f~W~~Vaii~~~~~~g~-~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +.++++.+| +++.+|++.+.+.. +..+.+.+.|++.|+.+.....+.+++   +.+.+.+.+..++ ..+++.||...
T Consensus        32 l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p---~~~~v~~~~~~~~-~~~~d~IIavG  106 (371)
T 1o2d_A           32 RGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENP---SFDNVMKAVERYR-NDSFDFVVGLG  106 (371)
T ss_dssp             HGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSC---BHHHHHHHHHHHT-TSCCSEEEEEE
T ss_pred             HHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCC---CHHHHHHHHHHHH-hcCCCEEEEeC
Confidence            345566678 89999887654432 367888899999998775555555554   4778888888888 56888888775


Q ss_pred             E
Q psy12591        112 K  112 (144)
Q Consensus       112 ~  112 (144)
                      .
T Consensus       107 G  107 (371)
T 1o2d_A          107 G  107 (371)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}

Probab=90.31  E-value=3.5  Score=29.03  Aligned_cols=81  Identities=17%  Similarity=0.055  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCC----CcchhhHHHHHHHHhcCC--C
Q psy12591         30 VKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSG----VAEETAYDDIVLKLLTKP--R  103 (144)
Q Consensus        30 ~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~----~~~~~~~~~~l~~lk~~~--~  103 (144)
                      ..++++.++..|-++|+++.   .|.....+.+++.+++.|+.+...........    ..+...+.+.+.++. .+  +
T Consensus        96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~g  171 (223)
T 2dgd_A           96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHL-NEVLK  171 (223)
T ss_dssp             HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTH-HHHTT
T ss_pred             HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHh-cccCC
Confidence            56777777778889999995   56667777888899999988765443322100    012455777777776 56  8


Q ss_pred             ceEEEEeeEEe
Q psy12591        104 ARGLFKRLKLV  114 (144)
Q Consensus       104 arvii~~~~~~  114 (144)
                      +++||+-++.+
T Consensus       172 adaIvLgCT~l  182 (223)
T 2dgd_A          172 ADAVYIACTAL  182 (223)
T ss_dssp             SSEEEECCTTS
T ss_pred             CCEEEEeCCcc
Confidence            99999987754

>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*

Probab=89.88  E-value=2.2  Score=31.16  Aligned_cols=86  Identities=13%  Similarity=0.046  Sum_probs=52.9

Q ss_pred             EEecCCchHHHHHHHHHHHhC--CCcEEEEEEEeC--CcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHH
Q psy12591         20 TRTIPSDHHQVKAMVEIVKKL--GWSYVSIIYEES--NYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIV   95 (144)
Q Consensus        20 fRt~p~d~~~~~a~~~ll~~f--~W~~Vaii~~~~--~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l   95 (144)
                      ......+...+..+++.|...  |.++|+++....  .......+.|.+.+++.|+.+.....  .+.   +..+....+
T Consensus        99 ~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~--~~~---~~~~~~~~~  173 (313)
T 2h3h_A           99 VYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILN--DEE---DGARAVSLA  173 (313)
T ss_dssp             CEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHHHHTTSSCEEEEEEE--CSS---CHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHHHhcCCCCEEEEeec--CCC---CHHHHHHHH
Confidence            344555555667777776655  899999998652  33456678899999999988754321  111   133344445


Q ss_pred             HHHhc-CCCceEEEEe
Q psy12591         96 LKLLT-KPRARGLFKR  110 (144)
Q Consensus        96 ~~lk~-~~~arvii~~  110 (144)
                      +++.. .++..+|++.
T Consensus       174 ~~~l~~~~~~~ai~~~  189 (313)
T 2h3h_A          174 EAALNAHPDLDAFFGV  189 (313)
T ss_dssp             HHHHHHCTTCCEEEEC
T ss_pred             HHHHHHCcCceEEEEc
Confidence            55442 3456677654

>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}

Probab=89.02  E-value=0.71  Score=35.92  Aligned_cols=72  Identities=10%  Similarity=0.068  Sum_probs=46.8

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++++.+| +++.+|++...+. ...+.+.+.|++ |+.+ ....+..++   +.+.+.+.+..++ ..+++.||-..
T Consensus        43 ~l~~~l~~~g-~r~liVtd~~~~~-~~~~~v~~~L~~-g~~~-~~~~~~~~p---~~~~v~~~~~~~~-~~~~d~IIavG  114 (387)
T 3uhj_A           43 KLAAYLAPLG-KRALVLIDRVLFD-ALSERIGKSCGD-SLDI-RFERFGGEC---CTSEIERVRKVAI-EHGSDILVGVG  114 (387)
T ss_dssp             TTHHHHGGGC-SEEEEEECTTTHH-HHHHHC-------CCEE-EEEECCSSC---SHHHHHHHHHHHH-HHTCSEEEEES
T ss_pred             HHHHHHHHcC-CEEEEEECchHHH-HHHHHHHHHHHc-CCCe-EEEEcCCCC---CHHHHHHHHHHHh-hcCCCEEEEeC
Confidence            3456778889 9998888766554 367788888988 9887 334455554   3677888888888 46788888764

>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B

Probab=88.96  E-value=3.7  Score=28.03  Aligned_cols=64  Identities=9%  Similarity=-0.005  Sum_probs=46.5

Q ss_pred             cEEEEEEEeCCcch---HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         43 SYVSIIYEESNYGV---KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        43 ~~Vaii~~~~~~g~---~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      -+++||...|+.|+   .....+...+++.|+.+.....++.+     ...+.+.|.+..+..++++||...
T Consensus        11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd-----~~~i~~~l~~a~~~~~~DlVittG   77 (172)
T 1mkz_A           11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN-----RYAIRAQVSAWIASDDVQVVLITG   77 (172)
T ss_dssp             CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC-----HHHHHHHHHHHHHSSSCCEEEEES
T ss_pred             CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCC-----HHHHHHHHHHHHhcCCCCEEEeCC
Confidence            47899988777663   34677888999999988877777654     567777887766322588887764

>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}

Probab=88.56  E-value=2.5  Score=32.09  Aligned_cols=73  Identities=19%  Similarity=0.139  Sum_probs=50.9

Q ss_pred             HHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeE
Q psy12591         33 MVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLK  112 (144)
Q Consensus        33 ~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~  112 (144)
                      +.++++.++.+++.+|++...+. ...+.+.+.+++.|+.+...... +++   +.+.+.+. ..++ ..+.+.||....
T Consensus        25 l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~-~~~---~~~~v~~~-~~~~-~~~~d~IIavGG   97 (354)
T 3ce9_A           25 IGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETV-KNI---DFDEIGTN-AFKI-PAEVDALIGIGG   97 (354)
T ss_dssp             HHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEE-CCC---BHHHHHHH-HTTS-CTTCCEEEEEES
T ss_pred             HHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecC-CCC---CHHHHHHH-HHhh-hcCCCEEEEECC
Confidence            55677778888988888765443 56788888999999877543323 343   36677777 7777 577888887653

>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}

Probab=85.71  E-value=3.6  Score=28.03  Aligned_cols=63  Identities=10%  Similarity=-0.064  Sum_probs=42.4

Q ss_pred             EEEEEEEeCCcc----------hHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         44 YVSIIYEESNYG----------VKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        44 ~Vaii~~~~~~g----------~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +++||+..|.-.          ......+.+.|++.|+.+.....++++     ...+...+....+..++++||...
T Consensus        17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd-----~~~i~~al~~~~a~~~~DlVittG   89 (178)
T 3iwt_A           17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDD-----KIKILKAFTDALSIDEVDVIISTG   89 (178)
T ss_dssp             EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSC-----HHHHHHHHHHHHTCTTCCEEEEES
T ss_pred             EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCC-----HHHHHHHHHHHHhcCCCCEEEecC
Confidence            688887544210          224567888999999999887777655     456767776655345678887765

>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*

Probab=85.60  E-value=2.7  Score=32.14  Aligned_cols=72  Identities=14%  Similarity=0.061  Sum_probs=50.6

Q ss_pred             HHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         33 MVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        33 ~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +.++++.+| +++.+|++...+. ...+.+.+.|++.|+.+.+ ..+...+   +...+.+.+..++ ..+++.||...
T Consensus        23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~---~~~~v~~~~~~~~-~~~~d~IIavG   94 (370)
T 1jq5_A           23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEA---SRNEVERIANIAR-KAEAAIVIGVG   94 (370)
T ss_dssp             HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSC---BHHHHHHHHHHHH-HTTCSEEEEEE
T ss_pred             HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCC---CHHHHHHHHHHHH-hcCCCEEEEeC
Confidence            556777778 8988888654443 4678888899989988753 3344433   3567788888887 56788888665

>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}

Probab=85.09  E-value=1.9  Score=30.87  Aligned_cols=87  Identities=11%  Similarity=0.038  Sum_probs=50.5

Q ss_pred             EecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH
Q psy12591         21 RTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL   98 (144)
Q Consensus        21 Rt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l   98 (144)
                      ....++...+..+++.|...|.++|+++.....  .+....+.|.+.+++.|+.+.....+..+.   ...+....+.++
T Consensus       118 ~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~  194 (296)
T 3brq_A          118 SVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIANGKW---TPASGAEGVEML  194 (296)
T ss_dssp             EECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHHHHHHHHTTTCCCCGGGEECCCS---SHHHHHHHHHHH
T ss_pred             EEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHHHHHHHHHHcCCCCChhhEEeCCC---ChhHHHHHHHHH
Confidence            344444445577778776679999999986533  345567888999999987653211122111   123334455555


Q ss_pred             hc-CCCceEEEEe
Q psy12591         99 LT-KPRARGLFKR  110 (144)
Q Consensus        99 k~-~~~arvii~~  110 (144)
                      .+ .++.++|++.
T Consensus       195 l~~~~~~~ai~~~  207 (296)
T 3brq_A          195 LERGAKFSALVAS  207 (296)
T ss_dssp             HTC--CCSEEEES
T ss_pred             HhCCCCCCEEEEC
Confidence            42 2456777654

>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}

Probab=83.59  E-value=3.9  Score=28.81  Aligned_cols=86  Identities=14%  Similarity=0.095  Sum_probs=52.1

Q ss_pred             EEecCCchHHHHHHHHHHHhC----CCcEEEEEEEeCC--cchHHHHHHHHHhhhC-ceEEEEEecccCCCCCcchhhHH
Q psy12591         20 TRTIPSDHHQVKAMVEIVKKL----GWSYVSIIYEESN--YGVKAFEELEVLLAKY-SICIAIKEKLVKDSGVAEETAYD   92 (144)
Q Consensus        20 fRt~p~d~~~~~a~~~ll~~f----~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~-Gi~V~~~~~~~~~~~~~~~~~~~   92 (144)
                      ......+...+..+++.|...    |.++|+++.....  ......+.|.+.+++. |+.+...  +....   ......
T Consensus       101 ~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~~~~~~~~~--~~~~~---~~~~~~  175 (276)
T 3ksm_A          101 GLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQGFLDVLRKHDKIRIIAA--PYAGD---DRGAAR  175 (276)
T ss_dssp             EEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHHHHHHHHTTCTTEEEEEC--CBCCS---SHHHHH
T ss_pred             eEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHHHHHHHHHhCCCcEEEEE--ecCCC---cHHHHH
Confidence            334556666677778877665    8999999975432  3456778899999887 8887632  22221   123333


Q ss_pred             HHHHHHh-cCCCceEEEEe
Q psy12591         93 DIVLKLL-TKPRARGLFKR  110 (144)
Q Consensus        93 ~~l~~lk-~~~~arvii~~  110 (144)
                      ..+.++. ..++.++|++.
T Consensus       176 ~~~~~~l~~~~~~~ai~~~  194 (276)
T 3ksm_A          176 SEMLRLLKETPTIDGLFTP  194 (276)
T ss_dssp             HHHHHHHHHCSCCCEEECC
T ss_pred             HHHHHHHHhCCCceEEEEC
Confidence            4444443 23456677654

>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*

Probab=83.34  E-value=10  Score=27.11  Aligned_cols=90  Identities=8%  Similarity=-0.104  Sum_probs=52.5

Q ss_pred             ceEEecCCchHHHHHHHHHHHh------------CCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCC
Q psy12591         18 YFTRTIPSDHHQVKAMVEIVKK------------LGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDS   83 (144)
Q Consensus        18 ~ffRt~p~d~~~~~a~~~ll~~------------f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~   83 (144)
                      .+......+...+..+++.|..            .|-++|+++.....  ......+.|.+.+++.|+.+.....+..+.
T Consensus       104 ~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~  183 (309)
T 2fvy_A          104 KAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMW  183 (309)
T ss_dssp             TEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTT
T ss_pred             ccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCccHHHHHHHHHHHHHhcCCceEEEEEecCCC
Confidence            4445555555566667776654            68889999976432  345567788899999987654332222221


Q ss_pred             CCcchhhHHHHHHHHhcC-C--CceEEEEe
Q psy12591         84 GVAEETAYDDIVLKLLTK-P--RARGLFKR  110 (144)
Q Consensus        84 ~~~~~~~~~~~l~~lk~~-~--~arvii~~  110 (144)
                         +.......++++... +  +.++|++.
T Consensus       184 ---~~~~~~~~~~~~l~~~~~~~~~ai~~~  210 (309)
T 2fvy_A          184 ---DTAQAKDKMDAWLSGPNANKIEVVIAN  210 (309)
T ss_dssp             ---CHHHHHHHHHHHHTSTTGGGCCEEEES
T ss_pred             ---CHHHHHHHHHHHHHhCCCCCccEEEEC
Confidence               123333455555422 2  56677654

>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1

Probab=83.33  E-value=8.4  Score=26.06  Aligned_cols=66  Identities=15%  Similarity=0.020  Sum_probs=46.7

Q ss_pred             CCcEEEEEEEeCCcch---HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         41 GWSYVSIIYEESNYGV---KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        41 ~W~~Vaii~~~~~~g~---~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .=-+++||...|+-|+   .....+...+++.|+.+.....++++     ...+.+.|.+..+..++++||...
T Consensus        12 ~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd-----~~~i~~~l~~~~~~~~~DlVittG   80 (169)
T 1y5e_A           12 KEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD-----KESIQQAVLAGYHKEDVDVVLTNG   80 (169)
T ss_dssp             CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS-----HHHHHHHHHHHHTCTTCSEEEEEC
T ss_pred             cCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCC-----HHHHHHHHHHHHhcCCCCEEEEcC
Confidence            3357899987776552   35677888899999988877767654     567778887766223688887764

>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}

Probab=83.28  E-value=7.9  Score=27.26  Aligned_cols=87  Identities=11%  Similarity=0.001  Sum_probs=51.0

Q ss_pred             EecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH
Q psy12591         21 RTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL   98 (144)
Q Consensus        21 Rt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l   98 (144)
                      .....+...+..+++.|...|.++|+++.....  ......+.|.+.+++.|+.+.....+....   ...+....+.++
T Consensus        99 ~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~  175 (275)
T 3d8u_A           99 NIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAP---SSQLGAEGLAKL  175 (275)
T ss_dssp             EECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHHHHHHTTCCCCCEEECSSCC---CHHHHHHHHHHH
T ss_pred             EEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHHHHHHcCCCCCccEEEeCCC---ChhHHHHHHHHH
Confidence            344455555677778776779999999986533  344567788899999987543221121111   123333445554


Q ss_pred             hc-CCCceEEEEe
Q psy12591         99 LT-KPRARGLFKR  110 (144)
Q Consensus        99 k~-~~~arvii~~  110 (144)
                      .+ .++.++|++.
T Consensus       176 l~~~~~~~ai~~~  188 (275)
T 3d8u_A          176 LLRDSSLNALVCS  188 (275)
T ss_dssp             HTTCTTCCEEEES
T ss_pred             HhCCCCCCEEEEc
Confidence            42 2456777654

>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}

Probab=83.07  E-value=4.1  Score=31.11  Aligned_cols=73  Identities=12%  Similarity=0.070  Sum_probs=50.8

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .+.++++.+|.+++.+|++....  +..+.+.+.|++.++.+  ...+.+++   +.+.+.+.+..++ ..+++.||-..
T Consensus        24 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v--~~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIavG   95 (353)
T 3hl0_A           24 DVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV--FSEAAMHT---PVEVTKTAVEAYR-AAGADCVVSLG   95 (353)
T ss_dssp             GHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE--ECCCCTTC---BHHHHHHHHHHHH-HTTCSEEEEEE
T ss_pred             HHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE--ecCcCCCC---cHHHHHHHHHHHh-ccCCCEEEEeC
Confidence            45677888999999998876543  35778888888876543  23333343   3667888888888 57788888765


Q ss_pred             E
Q psy12591        112 K  112 (144)
Q Consensus       112 ~  112 (144)
                      .
T Consensus        96 G   96 (353)
T 3hl0_A           96 G   96 (353)
T ss_dssp             S
T ss_pred             C
Confidence            3

>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}

Probab=83.02  E-value=10  Score=27.03  Aligned_cols=86  Identities=12%  Similarity=0.127  Sum_probs=53.7

Q ss_pred             ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh
Q psy12591         22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL   99 (144)
Q Consensus        22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk   99 (144)
                      ....+...+..+++.|...|-++|+++....+  ......+.|.+.+++.|+.+.....+....   +.......+.++.
T Consensus       107 V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~l  183 (288)
T 3gv0_A          107 HDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARKGFNRGIRDFGLTEFPIDAVTIET---PLEKIRDFGQRLM  183 (288)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHTTCEECCCCSCCTTS---CHHHHHHHHHHHT
T ss_pred             EEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHHHHHHHHHHcCCCcchhheecccc---chHHHHHHHHHHH
Confidence            34455556677778887789999999976543  345567889999999998765332232221   2334445555554


Q ss_pred             c-CCCceEEEEe
Q psy12591        100 T-KPRARGLFKR  110 (144)
Q Consensus       100 ~-~~~arvii~~  110 (144)
                      + .++..+|++.
T Consensus       184 ~~~~~~~ai~~~  195 (288)
T 3gv0_A          184 QSSDRPDGIVSI  195 (288)
T ss_dssp             TSSSCCSEEEES
T ss_pred             hCCCCCcEEEEc
Confidence            2 3456677654

>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}

Probab=82.18  E-value=2.6  Score=30.23  Aligned_cols=54  Identities=6%  Similarity=0.087  Sum_probs=38.6

Q ss_pred             EEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCC--cchHHHHHHHHHhhhCceEE
Q psy12591         20 TRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESN--YGVKAFEELEVLLAKYSICI   73 (144)
Q Consensus        20 fRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V   73 (144)
                      ......+...+..+++.|...|.++|+++.....  ......+.|.+.+++.|+.+
T Consensus       100 ~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~  155 (288)
T 2qu7_A          100 PSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNKAISEFDLNV  155 (288)
T ss_dssp             CEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            3344455556677778777779999999986532  34556778888999988765

>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A

Probab=82.10  E-value=3.3  Score=29.55  Aligned_cols=87  Identities=13%  Similarity=0.059  Sum_probs=50.0

Q ss_pred             EecCCchHHHHHHHHHHHhCCCcEEEEEEEeC--CcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHH
Q psy12591         21 RTIPSDHHQVKAMVEIVKKLGWSYVSIIYEES--NYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKL   98 (144)
Q Consensus        21 Rt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~--~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~l   98 (144)
                      .....+...+..+++.|...|.++|+++....  .......+.|.+.+++.|+.+.....+..+.   +..+....+.++
T Consensus       105 ~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~~~l~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~  181 (289)
T 1dbq_A          105 AVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDF---EPESGYRAMQQI  181 (289)
T ss_dssp             EEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHHHHHHHTTCCCCGGGBCCCCS---SHHHHHHHHHHH
T ss_pred             EEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHHHHHHHCCCCCChHHeEeCCC---CHHHHHHHHHHH
Confidence            34445555667777877777999999997542  3455677889999999987643211121111   123333445555


Q ss_pred             hc-CCCceEEEEe
Q psy12591         99 LT-KPRARGLFKR  110 (144)
Q Consensus        99 k~-~~~arvii~~  110 (144)
                      .+ .++.++|++.
T Consensus       182 l~~~~~~~ai~~~  194 (289)
T 1dbq_A          182 LSQPHRPTAVFCG  194 (289)
T ss_dssp             HTSSSCCSEEEES
T ss_pred             HhCCCCCCEEEEC
Confidence            42 2456777654

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=82.07  E-value=12  Score=26.86  Aligned_cols=87  Identities=13%  Similarity=0.052  Sum_probs=54.8

Q ss_pred             ceEEecCCchHHHHHHHHHHHhCC--CcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHH
Q psy12591         18 YFTRTIPSDHHQVKAMVEIVKKLG--WSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDD   93 (144)
Q Consensus        18 ~ffRt~p~d~~~~~a~~~ll~~f~--W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~   93 (144)
                      .+......+...+..+++.|...+  -++++++.....  ......+.|.+.+++.|+.+....  ...    .......
T Consensus       104 ~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~--~~~----~~~~~~~  177 (297)
T 3rot_A          104 YLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGIKTILQDKGIFFEELD--VGT----DPNQVQS  177 (297)
T ss_dssp             CSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEE--CCS----CHHHHHH
T ss_pred             cceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcCCeEEEee--cCC----ChHHHHH
Confidence            344455566667777888776667  899999975533  334567889999999999886544  111    1233344


Q ss_pred             HHHH-HhcCCCceEEEEe
Q psy12591         94 IVLK-LLTKPRARGLFKR  110 (144)
Q Consensus        94 ~l~~-lk~~~~arvii~~  110 (144)
                      .+.+ |+..++.++|++.
T Consensus       178 ~~~~~l~~~~~~~ai~~~  195 (297)
T 3rot_A          178 RVKSYFKIHPETNIIFCL  195 (297)
T ss_dssp             HHHHHHHHCTTCCEEEES
T ss_pred             HHHHHHHhCCCCCEEEEc
Confidence            4544 3334566777654

>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}

Probab=81.80  E-value=3.9  Score=29.07  Aligned_cols=85  Identities=18%  Similarity=0.240  Sum_probs=53.3

Q ss_pred             ecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHh-c
Q psy12591         22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLL-T  100 (144)
Q Consensus        22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk-~  100 (144)
                      ....+...+..+++.|...|.++|+++...........+.|.+.+++.|+.+.... +....   +.......+.++. .
T Consensus        98 V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~l~~  173 (280)
T 3gyb_A           98 VANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATMRAHGLEPLSND-YLGPA---VEHAGYTETLALLKE  173 (280)
T ss_dssp             EEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHHHHTTCCCEECC-CCSCC---CHHHHHHHHHHHHHH
T ss_pred             EEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHHHHcCcCCCccc-ccCCC---CHHHHHHHHHHHHhC
Confidence            34455556677788887789999999987654455677889999999998765332 22221   1233333444433 2


Q ss_pred             CCCceEEEEe
Q psy12591        101 KPRARGLFKR  110 (144)
Q Consensus       101 ~~~arvii~~  110 (144)
                      .++..+|++.
T Consensus       174 ~~~~~ai~~~  183 (280)
T 3gyb_A          174 HPEVTAIFSS  183 (280)
T ss_dssp             CTTCCEEEES
T ss_pred             CCCCCEEEEC
Confidence            3556777654

>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=81.44  E-value=4.2  Score=28.75  Aligned_cols=52  Identities=8%  Similarity=-0.001  Sum_probs=38.1

Q ss_pred             ecCCchHHHHHHHHHHHhCCCcEEEEEEEeC-C-----cch-HHHHHHHHHhhhCceEE
Q psy12591         22 TIPSDHHQVKAMVEIVKKLGWSYVSIIYEES-N-----YGV-KAFEELEVLLAKYSICI   73 (144)
Q Consensus        22 t~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~-~-----~g~-~~~~~~~~~l~~~Gi~V   73 (144)
                      ....+...+..+++.|...|.++|+++.... .     ... ...+.|.+.+++.|+.+
T Consensus        94 V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~  152 (276)
T 2h0a_A           94 VYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGFQEALKEAGRPF  152 (276)
T ss_dssp             EEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHHHHHHHHcCCCC
Confidence            4445555667777888777999999998654 3     445 66788999999998754

>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2

Probab=81.14  E-value=9.8  Score=28.63  Aligned_cols=74  Identities=11%  Similarity=0.012  Sum_probs=46.0

Q ss_pred             HHHHhCCCcEEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEE-EEee
Q psy12591         35 EIVKKLGWSYVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGL-FKRL  111 (144)
Q Consensus        35 ~ll~~f~W~~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvi-i~~~  111 (144)
                      -+.++||.+.+++...  +.+.+..-...+.+.++++++.+.+.+.....          +.++.|.+..+++++ +++.
T Consensus       216 Yfa~~yGL~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~----------~~~~~iA~e~g~~v~~~l~~  285 (321)
T 1xvl_A          216 YLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSD----------KGQKQVAQATGARFGGNLYV  285 (321)
T ss_dssp             HHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEETTSCS----------HHHHHHHTTTCCEEEEEECS
T ss_pred             HHHHHCCCeEEEeeccCCCCCCCHHHHHHHHHHHHHcCCcEEEEeCCCCh----------HHHHHHHHhcCCceeeeecC
Confidence            3557899998887543  34556666777888889999887776644322          233334435778876 3444


Q ss_pred             EEeeeCC
Q psy12591        112 KLVKDSG  118 (144)
Q Consensus       112 ~~~~~~g  118 (144)
                      ..+..+|
T Consensus       286 d~l~~~~  292 (321)
T 1xvl_A          286 DSLSTEE  292 (321)
T ss_dssp             SCCCCSS
T ss_pred             CccCCCC
Confidence            4443333

>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}

Probab=80.77  E-value=13  Score=27.21  Aligned_cols=88  Identities=15%  Similarity=0.072  Sum_probs=52.9

Q ss_pred             ceEEecCCchHHHHHHHHHHHh--CCCcEEEEEEEeCC--cchHHHHHHHHHhhhC-ceEEEEEecccCCCCCcchhhHH
Q psy12591         18 YFTRTIPSDHHQVKAMVEIVKK--LGWSYVSIIYEESN--YGVKAFEELEVLLAKY-SICIAIKEKLVKDSGVAEETAYD   92 (144)
Q Consensus        18 ~ffRt~p~d~~~~~a~~~ll~~--f~W~~Vaii~~~~~--~g~~~~~~~~~~l~~~-Gi~V~~~~~~~~~~~~~~~~~~~   92 (144)
                      .+......+...+..+++.|..  -|.++|+++....+  ......+.|.+.+++. |+.+...  +..+.   +..+..
T Consensus       110 ~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~R~~Gf~~al~~~pgi~~~~~--~~~~~---~~~~~~  184 (332)
T 2rjo_A          110 YVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIERKAGLDAALKKFPGIQLLDF--QVADW---NSQKAF  184 (332)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHHHHHTCTTEEEEEE--EECTT---CHHHHH
T ss_pred             eeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEee--ccCCC---CHHHHH
Confidence            3445555666666777777655  69999999986532  3455678889999998 9877542  22121   123333


Q ss_pred             HHHHHHhc--CCCceEEEEe
Q psy12591         93 DIVLKLLT--KPRARGLFKR  110 (144)
Q Consensus        93 ~~l~~lk~--~~~arvii~~  110 (144)
                      ..+.++.+  .++.++|++.
T Consensus       185 ~~~~~ll~~~~~~~~aI~~~  204 (332)
T 2rjo_A          185 PIMQAWMTRFNSKIKGVWAA  204 (332)
T ss_dssp             HHHHHHHHHHGGGEEEEEES
T ss_pred             HHHHHHHHhcCCCeeEEEEC
Confidence            44444432  2346666654

>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}

Probab=80.29  E-value=11  Score=26.73  Aligned_cols=87  Identities=17%  Similarity=0.048  Sum_probs=50.4

Q ss_pred             eEEecCCchHHHHHHHHHHHh-CC-CcEEEEEEEeCC--cchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591         19 FTRTIPSDHHQVKAMVEIVKK-LG-WSYVSIIYEESN--YGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI   94 (144)
Q Consensus        19 ffRt~p~d~~~~~a~~~ll~~-f~-W~~Vaii~~~~~--~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~   94 (144)
                      +....+.+...+..+++.|.. .| .++|+++....+  ......+.|.+.+++.|..+...  +....   +..+....
T Consensus       106 ~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--~~~~~---~~~~~~~~  180 (289)
T 3brs_A          106 DITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREEGLKIGLSDDSNKIEAI--YYCDS---NYDKAYDG  180 (289)
T ss_dssp             SEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHHHHHHHHGGGGGGEEEE--EECTT---CHHHHHHH
T ss_pred             eEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEee--ecCCC---CHHHHHHH
Confidence            444555555666777776655 56 999999986532  34556788889999888764322  22121   12333344


Q ss_pred             HHHHhc-CCCceEEEEe
Q psy12591         95 VLKLLT-KPRARGLFKR  110 (144)
Q Consensus        95 l~~lk~-~~~arvii~~  110 (144)
                      +.++.. .++.++|++.
T Consensus       181 ~~~~l~~~~~~~ai~~~  197 (289)
T 3brs_A          181 TVELLTKYPDISVMVGL  197 (289)
T ss_dssp             HHHHHHHCTTEEEEEES
T ss_pred             HHHHHHhCCCceEEEEC
Confidence            444432 3456666553

>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}

Probab=80.14  E-value=7.2  Score=27.84  Aligned_cols=53  Identities=8%  Similarity=-0.094  Sum_probs=36.0

Q ss_pred             EecCCchHHHHHHHHHHHhCCC--cEEEEEEEeC------CcchHHHHHHHHHhhhCceEE
Q psy12591         21 RTIPSDHHQVKAMVEIVKKLGW--SYVSIIYEES------NYGVKAFEELEVLLAKYSICI   73 (144)
Q Consensus        21 Rt~p~d~~~~~a~~~ll~~f~W--~~Vaii~~~~------~~g~~~~~~~~~~l~~~Gi~V   73 (144)
                      ...+.+...+..+++.|...|.  ++|+++....      .......+.|.+.+++.|..+
T Consensus       112 ~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~  172 (304)
T 3gbv_A          112 FFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPAC  172 (304)
T ss_dssp             EEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTS
T ss_pred             EEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCc
Confidence            3445555566777787777777  9999998431      233456778888888877543

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=80.06  E-value=9.4  Score=27.59  Aligned_cols=23  Identities=4%  Similarity=-0.229  Sum_probs=11.3

Q ss_pred             CCcchHHHHHHHHHhhhCceEEE
Q psy12591         52 SNYGVKAFEELEVLLAKYSICIA   74 (144)
Q Consensus        52 ~~~g~~~~~~~~~~l~~~Gi~V~   74 (144)
                      +.|+....+.+++.+++.|+.+.
T Consensus        14 ~~~~~~~~~gi~~~a~~~g~~~~   36 (313)
T 3m9w_A           14 LERWQKDRDIFVKKAESLGAKVF   36 (313)
T ss_dssp             SSTTHHHHHHHHHHHHHTSCEEE
T ss_pred             ChHHHHHHHHHHHHHHHcCCEEE
Confidence            34444555555555555554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d1ewka_	477	c.93.1.1 (A:) Metabotropic glutamate receptor subt	5e-19

>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 477

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 80.0 bits (196), Expect = 5e-19
 Identities = 32/84 (38%), Positives = 56/84 (66%)

Query: 1   VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFE 60
           +++ +TS +LS+K  ++YF R +PSD  Q +AM++IVK+  W+YVS ++ E NYG    +
Sbjct: 148 IAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMD 207

Query: 61  ELEVLLAKYSICIAIKEKLVKDSG 84
             + L A+  +CIA  +K+  ++G
Sbjct: 208 AFKELAAQEGLCIAHSDKIYSNAG 231

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1ewka_	477	Metabotropic glutamate receptor subtype 1 {Rat (Ra	99.9
d1dp4a_	425	Hormone binding domain of the atrial natriuretic p	99.56
d1jdpa_	401	Hormone binding domain of the atrial natriuretic p	99.45
d1usga_	346	Leucine-binding protein {Escherichia coli [TaxId:	99.3
d1qo0a_	373	Amide receptor/negative regulator of the amidase o	99.26
d3ckma1	317	YraM C-terminal domain {Haemophilus influenzae [Ta	98.85
d1vlja_	398	NADH-dependent butanol dehydrogenase A (TM0820) {T	95.59
d1rrma_	385	Lactaldehyde reductase FucO {Escherichia coli [Tax	94.98
d1o2da_	359	Alcohol dehydrogenase TM0920 {Thermotoga maritima	94.26
d1y5ea1	155	MoaB {Bacillus cereus [TaxId: 1396]}	91.87
d1jq5a_	366	Glycerol dehydrogenase {Bacillus stearothermophilu	89.72
d1mkza_	170	MoaB {Escherichia coli [TaxId: 562]}	87.55
d1guda_	288	D-allose-binding protein {Escherichia coli [TaxId:	86.26
d1tjya_	316	AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370	84.94
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	84.82
d1uuya_	161	Plant CNX1 G domain {Mouse-ear cress (Arabidopsis	83.14
d1byka_	255	Trehalose repressor, C-terminal domain {Escherichi	81.24

>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=7.4e-24  Score=167.95  Aligned_cols=128  Identities=30%  Similarity=0.552  Sum_probs=108.5

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEeccc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLV   80 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~   80 (144)
                      |||+++++.|+++..||+||||.|++..|++++++|+++|||++|++|+++++||....+.|++.++++|+||+..+.++
T Consensus       148 IS~~ats~~lsd~~~yp~f~Rt~psd~~~~~ai~~ll~~f~W~~V~vi~~~d~~g~~~~~~l~~~~~~~~i~v~~~~~i~  227 (477)
T d1ewka_         148 IAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIAHSDKIY  227 (477)
T ss_dssp             EESSCCCGGGGCTTTCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEC
T ss_pred             eccccCCccccccccCCceEEecccchhhHHHHHHHHHHcCCcEEEEEEecchhHHHHHHHHHHHHHHcCcEEEEEeecc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             CCCCCcchhhHHHHHHHHhcC-CCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCc
Q psy12591         81 KDSGVAEETAYDDIVLKLLTK-PRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKP  136 (144)
Q Consensus        81 ~~~~~~~~~~~~~~l~~lk~~-~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~  136 (144)
                      ...   .+.++..++++||.+ .++||||+++.     .-....++.++.....++.
T Consensus       228 ~~~---~~~~~~~~l~~l~~~~~~~rVIv~~~~-----~~~~~~ll~~a~~~g~~g~  276 (477)
T d1ewka_         228 SNA---GEKSFDRLLRKLRERLPKARVVVCFCE-----GMTVRGLLSAMRRLGVVGE  276 (477)
T ss_dssp             TTC---CHHHHHHHHHHHHTTTTTCCEEEEECC-----HHHHHHHHHHHHHHTCCSC
T ss_pred             CCC---chhhHHHHHHHHhhhccCceEEEEecC-----HHHHHHHHHHHHHcCccCC
Confidence            765   378999999999842 47999999864     2222334444444444443

>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=7.6e-15  Score=112.12  Aligned_cols=125  Identities=14%  Similarity=0.128  Sum_probs=92.6

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHH------HHHHHHHhhhCceEEE
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKA------FEELEVLLAKYSICIA   74 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~------~~~~~~~l~~~Gi~V~   74 (144)
                      ||++++++.|+++..||+|||+.|++..++.++++++++++|++|++++.+++||...      ...+++...+.++++.
T Consensus       105 is~~st~~~ls~~~~~~~~~r~~p~~~~~~~~~~~~l~~~~~~~vaii~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~v~  184 (425)
T d1dp4a_         105 LTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGDDRPCFFIVEGLYMRVRERLNITVN  184 (425)
T ss_dssp             EESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSSCCHHHHHHHHHHHHHHHHHCCEEE
T ss_pred             EeeecccccccccccCCccccccccchHHHHHHHHHHHhccCceEEEEEeccccccchhhHHHHHHHHHHHHHhcceEEe
Confidence            5789999999999999999999999999999999999999999999999999998743      3334444556778887


Q ss_pred             EEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCcc
Q psy12591         75 IKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPR  137 (144)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  137 (144)
                      .....+..     ..++..+++.++  ..+++|++++.     +-+...++..+...-.+++.
T Consensus       185 ~~~~~~~~-----~~~~~~~~~~~~--~~~~~vi~~~~-----~~~~~~~~~~a~~~g~~~~~  235 (425)
T d1dp4a_         185 HQEFVEGD-----PDHYPKLLRAVR--RKGRVIYICSS-----PDAFRNLMLLALNAGLTGED  235 (425)
T ss_dssp             EEEECTTC-----GGGHHHHHHHHH--HHCSEEEEESC-----HHHHHHHHHHHHHTTCCTTT
T ss_pred             eeeecCCc-----hhHHHHHHHHhh--hcceeEEEecc-----hhHHHHHHHHHHHhCCCCCc
Confidence            76655443     457777777766  45677776653     22333455555555555544

>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.3e-14  Score=106.77  Aligned_cols=125  Identities=14%  Similarity=0.152  Sum_probs=86.4

Q ss_pred             CcccCCCCCCcCC-CCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhh---CceEEEEE
Q psy12591          1 VSFWSTSPELSNK-QRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAK---YSICIAIK   76 (144)
Q Consensus         1 Is~~at~~~ls~~-~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~---~Gi~V~~~   76 (144)
                      |+++++++.+++. ..||+|||+.|++..++.++++++++++|++|++|+.+++||+.....++...+.   .++.+...
T Consensus       110 is~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~al~~~l~~~~~~~v~il~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~  189 (401)
T d1jdpa_         110 LSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDDKLERNCYFTLEGVHEVFQEEGLHTSIY  189 (401)
T ss_dssp             EESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECCSSSCHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred             eeccccccccccccccCCeEEEeccchHHHHHHHHHHHHhcCCcEEEEEEecCcccchHHHHHHHHHHHhccceEEEEee
Confidence            4678888888875 4689999999999999999999999999999999999999999877666555544   44444433


Q ss_pred             ecccCCCCCcchhhHHHHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcCcc
Q psy12591         77 EKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTKPR  137 (144)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  137 (144)
                      ...+.+     ..++..+++.++  ..++++|+++.     .-+...++..+.....+++.
T Consensus       190 ~~~~~~-----~~~~~~~~~~~~--~~~~~iv~~~~-----~~~~~~i~~~~~~~g~~~~~  238 (401)
T d1jdpa_         190 SFDETK-----DLDLEDIVRNIQ--ASERVVIMCAS-----SDTIRSIMLVAHRHGMTSGD  238 (401)
T ss_dssp             EECTTS-----CCCHHHHHHHHH--HHCSEEEEESC-----HHHHHHHHHHHHHTTCTTTT
T ss_pred             ccccCc-----hhHHHHHHHhhc--cCceeEEEEec-----hHHHHHHHHHHHHhCCCCCC
Confidence            333222     345666666554  45677777653     22233445555554444443

>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Leucine-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=3.3e-12  Score=95.19  Aligned_cols=104  Identities=16%  Similarity=0.218  Sum_probs=91.3

Q ss_pred             CcccCCCCCCcCCCCCCceEEecCCchHHHHHHHHH-HHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecc
Q psy12591          1 VSFWSTSPELSNKQRFEYFTRTIPSDHHQVKAMVEI-VKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKL   79 (144)
Q Consensus         1 Is~~at~~~ls~~~~~p~ffRt~p~d~~~~~a~~~l-l~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~   79 (144)
                      ++++++++.++.+ .+|++||+.|++..+...+.++ .++++|+++++++.++.||+.....+++.+++.|++|+..+.+
T Consensus        97 ~~~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~g~~~~~~~~~~~~~~g~~i~~~~~~  175 (346)
T d1usga_          97 ISPGATNPELTQR-GYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGI  175 (346)
T ss_dssp             EECCCCCGGGGSS-CCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cccccCChhhhcc-CccccccccccchhHHHHHHhhhhhccccceeEEecCchhhhHHHHHHHhhhhhcccceEEEEEec
Confidence            3567788888765 4899999999999999999996 5678899999999999999999999999999999999999888


Q ss_pred             cCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         80 VKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        80 ~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +..     +.++..++.+|+ .+++++|++..
T Consensus       176 ~~~-----~~d~~~~~~~i~-~~~~d~v~~~~  201 (346)
T d1usga_         176 TAG-----EKDFSALIARLK-KENIDFVYYGG  201 (346)
T ss_dssp             CTT-----CCCCHHHHHHHH-HTTCCEEEEES
T ss_pred             Ccc-----ccchhhHHHHhh-ccCCCEEEEec
Confidence            765     568999999999 68899998764

>d1qo0a_ c.93.1.1 (A:) Amide receptor/negative regulator of the amidase operon (AmiC) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Amide receptor/negative regulator of the amidase operon (AmiC)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.26  E-value=3.6e-11  Score=91.11  Aligned_cols=114  Identities=11%  Similarity=0.055  Sum_probs=92.6

Q ss_pred             CCCCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHH
Q psy12591         13 KQRFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYD   92 (144)
Q Consensus        13 ~~~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~   92 (144)
                      ....|++||+.|++..++..+++++...+|+++++++.|+.||+...+.+++.+++.|++|+..+.++-.+   .+.|++
T Consensus       105 ~~~~~~~f~~~~~~~~~~~~~~~~l~~~~~~~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~---~~~d~~  181 (373)
T d1qo0a_         105 FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHVMRHLYRQHGGTVLEEIYIPLYP---SDDDLQ  181 (373)
T ss_dssp             CCCCTTEEECSCCGGGTHHHHHHHHHHHSCSEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECSSC---CHHHHH
T ss_pred             cccCCceeeeccChHHHHHHHHHHHHhccCceeeeccCCccccHHHHhhhhhhhhcccCceeEEEEccCcc---ccchhH
Confidence            33578999999999999999999998889999999999999999999999999999999998776665443   278999


Q ss_pred             HHHHHHhcCCCceEEEEeeEEeeeCCcchhhhhHHHHHHHhcC
Q psy12591         93 DIVLKLLTKPRARGLFKRLKLVKDSGVAEETAYDDIVLKLLTK  135 (144)
Q Consensus        93 ~~l~~lk~~~~arvii~~~~~~~~~g~~~~~~~~~~~~~~~~~  135 (144)
                      .++++|+ ..++++|++...     |-+...++..+.......
T Consensus       182 ~~~~~i~-~~~pd~v~~~~~-----~~~~~~~~~~~~~~g~~~  218 (373)
T d1qo0a_         182 RAVERIY-QARADVVFSTVV-----GTGTAELYRAIARRYGDG  218 (373)
T ss_dssp             HHHHHHH-HHTCSEEEEECC-----STTHHHHHHHHHHHHCSS
T ss_pred             HHHHHHH-hhCCCceeeccc-----cchHHHHHHHHHHhcCcc
Confidence            9999999 678888876543     445555666555444433

>d3ckma1 c.93.1.1 (A:257-573) YraM C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: YraM C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.85  E-value=3e-09  Score=77.62  Aligned_cols=89  Identities=7%  Similarity=-0.035  Sum_probs=75.4

Q ss_pred             CCCceEEecCCchHHHHHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHH
Q psy12591         15 RFEYFTRTIPSDHHQVKAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDI   94 (144)
Q Consensus        15 ~~p~ffRt~p~d~~~~~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~   94 (144)
                      ..|++||+.+++..++..+++++...+|+++++++.++.||....+.|.+.+++.|++|...+.++..     +.+  ..
T Consensus        95 ~~~~~f~~~~~~~~~~~~la~~~~~~g~k~vail~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~-----~~~--~~  167 (317)
T d3ckma1          95 AIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRWQQLAGTDANIRYYNLP-----ADV--TY  167 (317)
T ss_dssp             CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHHHHHHSSCCEEEEESST-----THH--HH
T ss_pred             cccceEEeccCCHHHHHHHHhhhhhcccceeEEeccccccchhHHHHHHHHHHHcCCEEEEEEecccc-----chh--hh
Confidence            47899999999999999999999888999999999999999999999999999999999888887654     233  34


Q ss_pred             HHHHhcCCCceEEEEee
Q psy12591         95 VLKLLTKPRARGLFKRL  111 (144)
Q Consensus        95 l~~lk~~~~arvii~~~  111 (144)
                      +..++ ..+++++++..
T Consensus       168 ~~~~~-~~~~d~i~~~~  183 (317)
T d3ckma1         168 FVQEN-NSNTTALYAVA  183 (317)
T ss_dssp             HHHHS-CTTCCEEEECC
T ss_pred             hhhhc-ccCcceEEEec
Confidence            45556 56788887654

>d1vlja_ e.22.1.2 (A:) NADH-dependent butanol dehydrogenase A (TM0820) {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: NADH-dependent butanol dehydrogenase A (TM0820)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.59  E-value=0.027  Score=42.08  Aligned_cols=78  Identities=13%  Similarity=0.070  Sum_probs=62.2

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcch-HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEE
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGV-KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFK  109 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~-~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~  109 (144)
                      ..+.++++.+|.+++.+|+..+.+.. +..+.+.+.|++.|+.+.....+..++   +.++..+.+..++ ..+++.||-
T Consensus        23 ~~l~~~l~~~g~~rvliVt~~~~~~~~g~~~~l~~~L~~~gi~~~~f~~v~~~p---t~~~v~~~~~~~~-~~~~D~IIa   98 (398)
T d1vlja_          23 PKIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNP---VLSKVHEAVEVAK-KEKVEAVLG   98 (398)
T ss_dssp             GGHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSC---BHHHHHHHHHHHH-HTTCSEEEE
T ss_pred             HHHHHHHHhcCCCeEEEEECCcHHHHhhHHHHHHHHHHhcCCeEEEEcCccCCC---CHHHHHHHhhhcc-cccCceEEe
Confidence            34778899999999999998776654 467899999999999887666666665   3788888888888 578999887


Q ss_pred             eeE
Q psy12591        110 RLK  112 (144)
Q Consensus       110 ~~~  112 (144)
                      ...
T Consensus        99 vGG  101 (398)
T d1vlja_          99 VGG  101 (398)
T ss_dssp             EES
T ss_pred             cCC
Confidence            764

>d1rrma_ e.22.1.2 (A:) Lactaldehyde reductase FucO {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Lactaldehyde reductase FucO
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.019  Score=42.66  Aligned_cols=78  Identities=14%  Similarity=0.104  Sum_probs=59.9

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.+.++.+|++++-|+++..-.-.+..+.+.+.|++.|+++.....+.+++   +.++..+.+...| ..+++.||-.
T Consensus        19 ~~l~~~l~~~G~k~~Livt~~~~~~~g~~~~v~~~L~~~gi~~~vf~~v~~~p---~~~~v~~~~~~~~-~~~~D~Iiai   94 (385)
T d1rrma_          19 GALTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNP---TITVVKEGLGVFQ-NSGADYLIAI   94 (385)
T ss_dssp             GGHHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSC---BHHHHHHHHHHHH-HHTCSEEEEE
T ss_pred             HHHHHHHHHcCCCEEEEEECcchhhCcHHHHHHHHHHHcCCeEEEEcCccCCC---CHHHHHHHhhhhh-ccCCCEEEec
Confidence            45677889999999988875432223457889999999999887656676665   4788999999888 6789999877


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        95 GG   96 (385)
T d1rrma_          95 GG   96 (385)
T ss_dssp             ES
T ss_pred             CC
Confidence            63

>d1o2da_ e.22.1.2 (A:) Alcohol dehydrogenase TM0920 {Thermotoga maritima [TaxId: 2336]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Alcohol dehydrogenase TM0920
species: Thermotoga maritima [TaxId: 2336]

Probab=94.26  E-value=0.13  Score=37.67  Aligned_cols=76  Identities=13%  Similarity=0.084  Sum_probs=58.5

Q ss_pred             HHHHHHHhCCCcEEEEEEEeCCcch-HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         32 AMVEIVKKLGWSYVSIIYEESNYGV-KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        32 a~~~ll~~f~W~~Vaii~~~~~~g~-~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      .+-++++.+| +++.+|+++..+.. +..+.+.+.|++.|+.+.....+.+++   +.++..+.+..++ ..+++.||..
T Consensus        19 ~l~~~~~~~g-~k~liV~~~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~~p---~~~~v~~~~~~~~-~~~~D~IIav   93 (359)
T d1o2da_          19 KRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENP---SFDNVMKAVERYR-NDSFDFVVGL   93 (359)
T ss_dssp             HHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSC---BHHHHHHHHHHHT-TSCCSEEEEE
T ss_pred             HHHHHHHHcC-CeEEEEEcCcHHHHhhHHHHHHHHHHHcCCeEEEEcCccCCC---CHHHHHHhhhhcc-ccCCceEEec
Confidence            3455677788 78888888776654 467889999999999877656676665   4788888999888 6889988877


Q ss_pred             eE
Q psy12591        111 LK  112 (144)
Q Consensus       111 ~~  112 (144)
                      ..
T Consensus        94 GG   95 (359)
T d1o2da_          94 GG   95 (359)
T ss_dssp             ES
T ss_pred             cc
Confidence            53

>d1y5ea1 c.57.1.1 (A:12-166) MoaB {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: MoaB
species: Bacillus cereus [TaxId: 1396]

Probab=91.87  E-value=0.63  Score=29.63  Aligned_cols=63  Identities=16%  Similarity=0.054  Sum_probs=45.7

Q ss_pred             EEEEEEEeCCcch---HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         44 YVSIIYEESNYGV---KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        44 ~Vaii~~~~~~g~---~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +++||+..|.-|.   .....+.+.+++.|.++.....++++     ...+...+.++.+...+++|+.-.
T Consensus         4 r~~vitvsd~~~~~~D~ngp~L~~~l~~~G~~v~~~~iv~D~-----~~~i~~~l~~~~~~~~~DlIvTtG   69 (155)
T d1y5ea1           4 RCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDD-----KESIQQAVLAGYHKEDVDVVLTNG   69 (155)
T ss_dssp             EEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSS-----HHHHHHHHHHHHTCTTCSEEEEEC
T ss_pred             EEEEEEEeCCCCCCcCccHHHHHHHHHhcCCEEEEeeeecch-----HHHHHHHHHHHHhccCCCEEEEee
Confidence            5677775444443   46778889999999999887777765     567778888776446788887765

>d1jq5a_ e.22.1.2 (A:) Glycerol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Multi-domain proteins (alpha and beta)
fold: Dehydroquinate synthase-like
superfamily: Dehydroquinate synthase-like
family: Iron-containing alcohol dehydrogenase
domain: Glycerol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.72  E-value=0.49  Score=34.34  Aligned_cols=74  Identities=14%  Similarity=0.059  Sum_probs=53.0

Q ss_pred             HHHHHHHHhCCCcEEEEEEEeCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         31 KAMVEIVKKLGWSYVSIIYEESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        31 ~a~~~ll~~f~W~~Vaii~~~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ..+.+.++.+| +++.+|++...+- ...+.+.+.+++.|+.+... .++.++   +..+....+..++ ..+++.||..
T Consensus        20 ~~l~~~l~~~g-~r~lvvtd~~~~~-~~~~~l~~~L~~~~i~~~~~-~~~~~p---~~~~v~~~~~~~~-~~~~D~Iiav   92 (366)
T d1jq5a_          20 TKIANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEEV-VFSGEA---SRNEVERIANIAR-KAEAAIVIGV   92 (366)
T ss_dssp             GGHHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEEE-ECCSSC---BHHHHHHHHHHHH-HTTCSEEEEE
T ss_pred             HHHHHHHHHcC-CeEEEEECCcHHH-HHHHHHHHHHHHCCCeEEEE-EeCCCC---CHHHHHHHHHHhh-ccCCcEEEEe
Confidence            35677888899 8988887544332 23478888999999877543 466554   4677888888888 5788888876


Q ss_pred             e
Q psy12591        111 L  111 (144)
Q Consensus       111 ~  111 (144)
                      .
T Consensus        93 G   93 (366)
T d1jq5a_          93 G   93 (366)
T ss_dssp             E
T ss_pred             c
Confidence            5

>d1mkza_ c.57.1.1 (A:) MoaB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: MoaB
species: Escherichia coli [TaxId: 562]

Probab=87.55  E-value=2.4  Score=27.28  Aligned_cols=68  Identities=9%  Similarity=-0.035  Sum_probs=46.0

Q ss_pred             hCCCcEEEEEEEeCCcch---HHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         39 KLGWSYVSIIYEESNYGV---KAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        39 ~f~W~~Vaii~~~~~~g~---~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      .|.=-+|+||...|.-|.   .....+.+.+++.|..+.....++.+     ...+...+.+.....++++|+.-.
T Consensus         5 ~f~p~rvaiitvsD~~g~~~D~nGp~L~~~l~~~G~~v~~~~iv~Dd-----~~~~~~~l~~~~~~~~~dlIiTtG   75 (170)
T d1mkza_           5 EFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKEN-----RYAIRAQVSAWIASDDVQVVLITG   75 (170)
T ss_dssp             SCCCCEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSC-----HHHHHHHHHHHHHSSSCCEEEEES
T ss_pred             CcCCceEEEEEEcCCCCcCCCChHHHHHHHHHHCCCEEEEeeeeCCC-----HHHHHHHHHhhhhcccceEEEEee
Confidence            355558899987654443   45678889999999988876666654     455666665544356678887654

>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-allose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=86.26  E-value=0.97  Score=30.71  Aligned_cols=62  Identities=8%  Similarity=0.069  Sum_probs=32.9

Q ss_pred             EEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         44 YVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        44 ~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      ++++|..  ++.|+....+.+++.+++.|..+.....-...    +.......+.++. ..+++.||+.
T Consensus         3 ~~a~i~~~~~npff~~i~~g~~~~a~~~g~~~~i~~~~~~~----d~~~q~~~i~~~i-~~~~DgIi~~   66 (288)
T d1guda_           3 EYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEG----DFQSQLQLFEDLS-NKNYKGIAFA   66 (288)
T ss_dssp             EEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSSTT----CHHHHHHHHHHHH-TSSEEEEEEC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCC----CHHHHHHHHHHHH-hcCCCEEEEe
Confidence            3455543  34577777777777777777665442211111    1222334555555 4566666654

>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: AI-2 receptor LsrB
species: Salmonella typhi [TaxId: 90370]

Probab=84.94  E-value=0.63  Score=31.85  Aligned_cols=63  Identities=5%  Similarity=-0.017  Sum_probs=40.1

Q ss_pred             cEEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         43 SYVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        43 ~~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      ++|++|..  ++.|+....+.+++++++.|+.+...  .+...   +...-.+.++++. ..+++.||+..
T Consensus         4 ~kI~~i~~~~~npf~~~~~~g~~~~a~~~G~~v~~~--~~~~~---d~~~q~~~i~~~i-~~~~dgIIi~~   68 (316)
T d1tjya_           4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYD--GPTEP---SVSGQVQLVNNFV-NQGYDAIIVSA   68 (316)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEEC--CCSSC---CHHHHHHHHHHHH-HTTCSEEEECC
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEE--ECCCC---CHHHHHHHHHHHH-hcCCCeeeecc
Confidence            57888864  46788888888999999888876432  12211   1233345566665 46677777653

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.82  E-value=0.94  Score=30.56  Aligned_cols=61  Identities=11%  Similarity=0.120  Sum_probs=33.3

Q ss_pred             cEEEEEEE--eCCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEe
Q psy12591         43 SYVSIIYE--ESNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKR  110 (144)
Q Consensus        43 ~~Vaii~~--~~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~  110 (144)
                      |.||+|..  ++.|.....+.+++.++++|..+.....   ..   +.+.....+..+. ..+++.+|+.
T Consensus         1 ktIg~i~~~~~~pf~~~~~~gi~~~~~~~gy~~~~~~~---~~---d~~~~~~~~~~l~-~~~vdgiIi~   63 (282)
T d1dbqa_           1 KSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---WN---NLEKQRAYLSMMA-QKRVDGLLVM   63 (282)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEEC---TT---CHHHHHHHHHHHH-HTTCSEEEEE
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC---CC---CHHHHHHHHHHHH-hcCCCEEeee
Confidence            35666654  3456666777777777777765543221   11   1233445556565 4556665554

>d1uuya_ c.57.1.1 (A:) Plant CNX1 G domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MogA-like
domain: Plant CNX1 G domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.14  E-value=3.5  Score=26.24  Aligned_cols=63  Identities=10%  Similarity=0.009  Sum_probs=39.9

Q ss_pred             EEEEEEEeCCc--c---hHHHHHHHHHhhh-----CceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         44 YVSIIYEESNY--G---VKAFEELEVLLAK-----YSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        44 ~Vaii~~~~~~--g---~~~~~~~~~~l~~-----~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +++||..+|.-  |   ......+.+.+.+     .|..+.....++++     ...+.+.|.++.+..++++||.-.
T Consensus         5 rvaIitvsD~~~~G~~~D~~G~~l~~~l~~~~~~~~G~~v~~~~ivpDd-----~~~I~~~l~~~~~~~~~D~IittG   77 (161)
T d1uuya_           5 KVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDE-----VERIKDILQKWSDVDEMDLILTLG   77 (161)
T ss_dssp             EEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSC-----HHHHHHHHHHHHHTSCCSEEEEES
T ss_pred             EEEEEEECCCCCCCCcCCCchHHHHHHHHhhccccCCcEEEEEEEECCC-----HHHHHHHHHHhhhcCCceEEEEec
Confidence            67888754421  1   1234445555554     38888887777765     567888888875455688777654

>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Trehalose repressor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.24  E-value=2.8  Score=27.96  Aligned_cols=62  Identities=13%  Similarity=-0.028  Sum_probs=42.3

Q ss_pred             cEEEEEEEe--CCcchHHHHHHHHHhhhCceEEEEEecccCCCCCcchhhHHHHHHHHhcCCCceEEEEee
Q psy12591         43 SYVSIIYEE--SNYGVKAFEELEVLLAKYSICIAIKEKLVKDSGVAEETAYDDIVLKLLTKPRARGLFKRL  111 (144)
Q Consensus        43 ~~Vaii~~~--~~~g~~~~~~~~~~l~~~Gi~V~~~~~~~~~~~~~~~~~~~~~l~~lk~~~~arvii~~~  111 (144)
                      +-||+|..+  +.+.....+.+.+.++++|..+.....   +.   +.....+.++.++ ..+++.||++.
T Consensus         3 k~Igvi~p~~~~~~~~~~~~~i~~~~~~~Gy~~~~~~s---~~---d~~~~~~~i~~l~-~~~vdgiIi~~   66 (255)
T d1byka_           3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES---QF---SPQLVAEHLGVLK-RRNIDGVVLFG   66 (255)
T ss_dssp             CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC---TT---CHHHHHHHHHHHH-TTTCCEEEEEC
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeC---CC---CHHHHHHHHHHHH-hccccceeecc
Confidence            467888753  445567888999999999988754332   11   1345566777887 57788888764