Psyllid ID: psy125

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
Protein Sequence
MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL
Secondary Structure (PSIPRED)
cccccccccEEEEEEccccccHHHHHHHcccccccccccccccEEEEEEEEEEccEEEEEEEEEcccccccccccccccccccEEEEEEEcccHHHcccHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHccccEEEEEEEccccccHHHHHHHHccccccccccccccEEEEEEEEEEccEEEEEEEEEccccccccccccccEEcccEEEEEEEccccHHHHHHHHHHHHccccccccEEEEEEEEcccccccEEEccccccccccccHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHEEEEEEEEcccccHHHHHccEHHHHHccEEEccccEEEEEEEEEEccEEEEEEEEEEccHHHcccccHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHHccccEEEEEEccccccccccHHHHcccccccEEEEEEEHHHcEcccHHHHHHHHHHHccccccEEEcccEccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHcHEEEEEEEEcccccHHHHHccEHHHHHccEEEccccEEEEEEEEEEccEEEEEEEEEEccHHHcccccHHHHccccEEEEEEEcccHHHHHcEEEEEHHHcEccHHHHHHHHHHHHccccccEEEcccEccccccccHHHHHHHHHHHHHHcccHcccccccc
Coil and Loop (DISEMBL)
maaemdmpsfkcvlvgdggtgktTFVKRHLTGEFEKKYVATLgvevhplvfhtnrgairfnvwdtagqekfgglrdgyyiqgQCAIIMFDVtsrityknvpnwHRDLVRVcenipivlcgnkvdikdrkVKAKSIVFHRkknlqyydisaksnynfeKPFLWLARKligdpnlefvampallppevtmdpqwQSRIEQDLKEAqetalpdddedLMAAEmdmpsfkcvlvgdggtgktTFVKRHLTGEFEKKYVATLgvevhplvfhtnrgairfnvwdtagqekfgglrdgyyiqgQCAIIMFDVTsrityknyydisaksnynfekPFLWLARKligdpnlefvampallppevtmdpqwQSRIEQDLKEAqetalpdddedl
Flexible Loop (DISEMBL)
maaemdmpsfkcvlvgdggtGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIpivlcgnkvdikdrkvkaksivfhrkknlqyydisakSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAqetalpdddedl
Low Complexity Region (SEG)
MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETalpdddedlmaaemdmpSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL
Disordered region (IsUnstruct)
*********FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPP***************************************SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLP********************************
Disordered Region (DISOPRED)
*****DM*SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG**********************************************MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ***********
Disordered Region (DISEMBL)
MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL
Disordered Region (DISPRO)
*AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALL******************************EDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET*LP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	385	2.2.26 [Sep-21-2011]
Q9VZ23	216	GTP-binding nuclear prote	yes	N/A	0.558	0.995	0.907	1e-116
P52301	216	GTP-binding nuclear prote	N/A	N/A	0.420	0.75	0.908	1e-110
P42558	216	GTP-binding nuclear prote	yes	N/A	0.420	0.75	0.908	1e-110
Q9YGC0	215	GTP-binding nuclear prote	N/A	N/A	0.420	0.753	0.903	1e-110
Q6GL85	216	GTP-binding nuclear prote	yes	N/A	0.420	0.75	0.903	1e-110
P79735	215	GTP-binding nuclear prote	yes	N/A	0.441	0.790	0.874	1e-109
P38542	215	GTP-binding nuclear prote	N/A	N/A	0.441	0.790	0.860	1e-109
P62828	216	GTP-binding nuclear prote	yes	N/A	0.420	0.75	0.903	1e-109
Q5R556	216	GTP-binding nuclear prote	yes	N/A	0.420	0.75	0.903	1e-109
P62827	216	GTP-binding nuclear prote	yes	N/A	0.420	0.75	0.903	1e-109

>sp|Q9VZ23|RAN_DROME GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1

 Score =  419 bits (1077), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 196/216 (90%), Positives = 209/216 (96%), Gaps = 1/216 (0%)

Query: 1   MAAE-MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           MA E  D+P+FKCVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL+FHTNRGAIR
Sbjct: 1   MAQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIR 60

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
           FNVWDTAGQEKFGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120

Query: 120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
           GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL+GDPNLEFVAMP
Sbjct: 121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMP 180

Query: 180 ALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           ALLPPEV MD  WQ++IE+DL+EAQ TALPD+DE+L
Sbjct: 181 ALLPPEVKMDKDWQAQIERDLQEAQATALPDEDEEL 216

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. RanGTP modulates both spindle and nuclear envelope assembly supporting a mitotic role of Ran.
Drosophila melanogaster (taxid: 7227)

>sp|P52301|RAN_XENLA GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2

 Score =  399 bits (1024), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/207 (90%), Positives = 195/207 (94%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 189 DPQWQSRIEQDLKEAQETALPDDDEDL 215
           DP   ++ EQDL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEQDLQNAQATALPDEDDDL 216

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Xenopus laevis (taxid: 8355)

>sp|P42558|RAN_CHICK GTP-binding nuclear protein Ran OS=Gallus gallus GN=RAN PE=2 SV=1

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/207 (90%), Positives = 195/207 (94%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 189 DPQWQSRIEQDLKEAQETALPDDDEDL 215
           DP   ++ EQDL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEQDLQIAQTTALPDEDDDL 216

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Gallus gallus (taxid: 9031)

>sp|Q9YGC0|RAN_SALSA GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1

 Score =  397 bits (1021), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/207 (90%), Positives = 195/207 (94%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAI++NVWDTAGQ
Sbjct: 9   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQ 68

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 69  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPE+ M
Sbjct: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEILM 188

Query: 189 DPQWQSRIEQDLKEAQETALPDDDEDL 215
           DP   ++ E DLK A ETALPD+D+DL
Sbjct: 189 DPSLAAQYEHDLKVASETALPDEDDDL 215

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Salmo salar (taxid: 8030)

>sp|Q6GL85|RAN_XENTR GTP-binding nuclear protein Ran OS=Xenopus tropicalis GN=ran PE=2 SV=1

 Score =  397 bits (1020), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/207 (90%), Positives = 194/207 (93%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN EFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNFEFVAMPALAPPEVVM 189

Query: 189 DPQWQSRIEQDLKEAQETALPDDDEDL 215
           DP   ++ EQDL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEQDLQHAQATALPDEDDDL 216

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Xenopus tropicalis (taxid: 8364)

>sp|P79735|RAN_DANRE GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1

 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/215 (87%), Positives = 196/215 (91%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA       FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAI++
Sbjct: 1   MAENEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKY 60

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
           NVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCG
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 120

Query: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
           NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV MPA
Sbjct: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPA 180

Query: 181 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           L PPE+ MDP   ++ E DLK A ETALPD+D+DL
Sbjct: 181 LAPPEIAMDPTLAAQYEHDLKVASETALPDEDDDL 215

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Danio rerio (taxid: 7955)

>sp|P38542|RAN_BRUMA GTP-binding nuclear protein Ran OS=Brugia malayi GN=Bm1_44725 PE=2 SV=2

 Score =  397 bits (1019), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/215 (86%), Positives = 197/215 (91%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA   D+P+FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL+FHTNRG IRF
Sbjct: 1   MATGDDIPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLIFHTNRGQIRF 60

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
           NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT+R+TYKNVPNWHRDLVRVCENIPIVLCG
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCG 120

Query: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
           NKVD+KDRKVKAK+I FHRKKNLQYYDISAKSNYNFEKPFLWLARKL+GDPNLEFVAMPA
Sbjct: 121 NKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPA 180

Query: 181 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           L PPEV MDP   ++ EQ++  A    LPDDDEDL
Sbjct: 181 LAPPEVQMDPTMVAQYEQEIAAAANAELPDDDEDL 215

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Brugia malayi (taxid: 6279)

>sp|P62828|RAN_RAT GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/207 (90%), Positives = 194/207 (93%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 189 DPQWQSRIEQDLKEAQETALPDDDEDL 215
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. The complex with BIRC5/survivin plays a role in mitotic spindle formation by serving as a physical scaffold to help deliver the RAN effector molecule TPX2 to microtubules. Acts as a negative regulator of the kinase activity of VRK1 and VRK2.

Rattus norvegicus (taxid: 10116)

>sp|Q5R556|RAN_PONAB GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/207 (90%), Positives = 194/207 (93%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 189 DPQWQSRIEQDLKEAQETALPDDDEDL 215
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. The complex with BIRC5/survivin plays a role in mitotic spindle formation by serving as a physical scaffold to help deliver the RAN effector molecule TPX2 to microtubules. Acts as a negative regulator of the kinase activity of VRK1 and VRK2.

Pongo abelii (taxid: 9601)

>sp|P62827|RAN_MOUSE GTP-binding nuclear protein Ran OS=Mus musculus GN=Ran PE=1 SV=3

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/207 (90%), Positives = 194/207 (93%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129

Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189

Query: 189 DPQWQSRIEQDLKEAQETALPDDDEDL 215
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. The complex with BIRC5/survivin plays a role in mitotic spindle formation by serving as a physical scaffold to help deliver the RAN effector molecule TPX2 to microtubules. Acts as a negative regulator of the kinase activity of VRK1 and VRK2.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
322783350	245	hypothetical protein SINV_05802 [Solenop	0.425	0.669	0.948	1e-119
307206476	215	GTP-binding nuclear protein Ran [Harpegn	0.441	0.790	0.948	1e-119
48097366	215	PREDICTED: GTP-binding nuclear protein R	0.441	0.790	0.944	1e-119
307191011	215	GTP-binding nuclear protein Ran [Campono	0.441	0.790	0.948	1e-119
91091114	215	PREDICTED: similar to putative GTP-bindi	0.441	0.790	0.944	1e-119
156549246	215	PREDICTED: GTP-binding nuclear protein R	0.441	0.790	0.939	1e-119
383847263	215	PREDICTED: GTP-binding nuclear protein R	0.441	0.790	0.939	1e-118
380018691	215	PREDICTED: LOW QUALITY PROTEIN: GTP-bind	0.441	0.790	0.939	1e-118
121543953	213	putative GTP-binding nuclear protein Ran	0.428	0.774	0.942	1e-117
350412636	218	PREDICTED: GTP-binding nuclear protein R	0.441	0.779	0.925	1e-117

>gi|322783350|gb|EFZ10904.1| hypothetical protein SINV_05802 [Solenopsis invicta]

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/215 (94%), Positives = 211/215 (98%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA E DMP+FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL+FHTNRG IRF
Sbjct: 31  MANEPDMPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLIFHTNRGPIRF 90

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
           NVWDTAGQEKFGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCG
Sbjct: 91  NVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 150

Query: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
           NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA
Sbjct: 151 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 210

Query: 181 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           LLPPEVTMDPQWQ +IE+DLKEAQETALP+DDEDL
Sbjct: 211 LLPPEVTMDPQWQQQIEKDLKEAQETALPEDDEDL 245

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206476|gb|EFN84506.1| GTP-binding nuclear protein Ran [Harpegnathos saltator]

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/215 (94%), Positives = 211/215 (98%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA E DMP+FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL+FHTNRG IRF
Sbjct: 1   MAQENDMPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLIFHTNRGPIRF 60

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
           NVWDTAGQEKFGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCG
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 120

Query: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
           NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA
Sbjct: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180

Query: 181 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           LLPPEVTMDPQWQ +IE+DLKEAQETALP+DDEDL
Sbjct: 181 LLPPEVTMDPQWQQQIEKDLKEAQETALPEDDEDL 215

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48097366|ref|XP_393761.1| PREDICTED: GTP-binding nuclear protein Ran [Apis mellifera]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/215 (94%), Positives = 211/215 (98%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA E D+P+FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL+FHTNRG IRF
Sbjct: 1   MAQEADIPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLIFHTNRGPIRF 60

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
           NVWDTAGQEKFGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCG
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 120

Query: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
           NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA
Sbjct: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180

Query: 181 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           LLPPEVTMDPQWQ +IE+DLKEAQETALP+DDEDL
Sbjct: 181 LLPPEVTMDPQWQQQIEKDLKEAQETALPEDDEDL 215

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191011|gb|EFN74765.1| GTP-binding nuclear protein Ran [Camponotus floridanus] gi|332023697|gb|EGI63921.1| GTP-binding nuclear protein Ran [Acromyrmex echinatior]

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/215 (94%), Positives = 211/215 (98%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA E DMP+FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL+FHTNRG IRF
Sbjct: 1   MANEPDMPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLIFHTNRGPIRF 60

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
           NVWDTAGQEKFGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCG
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 120

Query: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
           NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA
Sbjct: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180

Query: 181 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           LLPPEVTMDPQWQ +IE+DLKEAQETALP+DDEDL
Sbjct: 181 LLPPEVTMDPQWQQQIEKDLKEAQETALPEDDEDL 215

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091114|ref|XP_966512.1| PREDICTED: similar to putative GTP-binding nuclear protein Ran isoform 1 [Tribolium castaneum] gi|91091116|ref|XP_975893.1| PREDICTED: similar to putative GTP-binding nuclear protein Ran isoform 2 [Tribolium castaneum] gi|270014090|gb|EFA10538.1| hypothetical protein TcasGA2_TC012793 [Tribolium castaneum]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 203/215 (94%), Positives = 211/215 (98%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA E +MP+FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF
Sbjct: 1   MAQEQEMPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
           NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCG
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 120

Query: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
           NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA
Sbjct: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180

Query: 181 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           L+PPEVTMDP WQ +IE+DLKEAQETALP+DDE+L
Sbjct: 181 LVPPEVTMDPHWQQQIEKDLKEAQETALPEDDEEL 215

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549246|ref|XP_001607134.1| PREDICTED: GTP-binding nuclear protein Ran-like isoform 1 [Nasonia vitripennis] gi|345487376|ref|XP_003425683.1| PREDICTED: GTP-binding nuclear protein Ran-like isoform 2 [Nasonia vitripennis] gi|345487379|ref|XP_003425684.1| PREDICTED: GTP-binding nuclear protein Ran-like isoform 3 [Nasonia vitripennis]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 202/215 (93%), Positives = 211/215 (98%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           M+ E D+P+FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL+FHTNRG IRF
Sbjct: 1   MSQEADVPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLIFHTNRGPIRF 60

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
           NVWDTAGQEKFGGLRDGYYIQGQCAI+MFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCG
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIVMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 120

Query: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
           NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA
Sbjct: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180

Query: 181 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           LLPPEVTMDPQWQ +IE+DLKEAQETALP+DDEDL
Sbjct: 181 LLPPEVTMDPQWQQQIEKDLKEAQETALPEDDEDL 215

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847263|ref|XP_003699274.1| PREDICTED: GTP-binding nuclear protein Ran-like [Megachile rotundata]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/215 (93%), Positives = 211/215 (98%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA E D+P+FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL+FHTNRG IRF
Sbjct: 1   MAQEADIPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLIFHTNRGPIRF 60

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
           NVWDTAGQEKFGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCG
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 120

Query: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
           NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA
Sbjct: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180

Query: 181 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           LLPPEVTMDPQWQ +IE+DLKEAQ+TALP+DDEDL
Sbjct: 181 LLPPEVTMDPQWQQQIEKDLKEAQDTALPEDDEDL 215

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018691|ref|XP_003693258.1| PREDICTED: LOW QUALITY PROTEIN: GTP-binding nuclear protein Ran-like [Apis florea]

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 202/215 (93%), Positives = 210/215 (97%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA E D+P+FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL+FHTNRG IRF
Sbjct: 1   MAQEADIPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLIFHTNRGPIRF 60

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
           NVWDTAGQEKFGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCG
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 120

Query: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
           NKVDIKDRK KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA
Sbjct: 121 NKVDIKDRKXKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180

Query: 181 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           LLPPEVTMDPQWQ +IE+DLKEAQETALP+DDEDL
Sbjct: 181 LLPPEVTMDPQWQQQIEKDLKEAQETALPEDDEDL 215

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|121543953|gb|ABM55641.1| putative GTP-binding nuclear protein Ran [Maconellicoccus hirsutus]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 198/210 (94%), Positives = 210/210 (100%)

Query: 6   DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
           DMP+FKCVLVGDGGTGKTTFVKRHLTGEFEK+YVATLGVE+HPLVFHTNRGAIRFNVWDT
Sbjct: 4   DMPTFKCVLVGDGGTGKTTFVKRHLTGEFEKRYVATLGVEIHPLVFHTNRGAIRFNVWDT 63

Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDI 125
           AGQEKFGGLRDGYYIQGQCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDI
Sbjct: 64  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDI 123

Query: 126 KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPE 185
           KDRKVKAK+IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL+PPE
Sbjct: 124 KDRKVKAKTIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALVPPE 183

Query: 186 VTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           +TMDPQWQ++IE+DLKEAQ+TALP+DDEDL
Sbjct: 184 ITMDPQWQTQIEKDLKEAQDTALPEDDEDL 213

Source: Maconellicoccus hirsutus

Species: Maconellicoccus hirsutus

Genus: Maconellicoccus

Family: Pseudococcidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350412636|ref|XP_003489712.1| PREDICTED: GTP-binding nuclear protein Ran-like [Bombus impatiens]

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/215 (92%), Positives = 209/215 (97%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA  +++P+FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL+FHTNRG IRF
Sbjct: 4   MAQNVEIPTFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLIFHTNRGPIRF 63

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
           NVWDTAGQEKFGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCG
Sbjct: 64  NVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 123

Query: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
           NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL RKLIGD NLEFVAMPA
Sbjct: 124 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLGRKLIGDANLEFVAMPA 183

Query: 181 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           LLPPEVTMDPQWQ +IE+DLKEAQETALP+DDEDL
Sbjct: 184 LLPPEVTMDPQWQQQIEKDLKEAQETALPEDDEDL 218

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	385
FB|FBgn0020255	216	Ran "Ran" [Drosophila melanoga	0.535	0.953	0.913	4.1e-104
UNIPROTKB|P52301	216	ran "GTP-binding nuclear prote	0.535	0.953	0.888	4.5e-98
UNIPROTKB|F1NEV9	218	RAN "GTP-binding nuclear prote	0.535	0.944	0.888	9.4e-98
UNIPROTKB|P42558	216	RAN "GTP-binding nuclear prote	0.535	0.953	0.888	9.4e-98
ZFIN|ZDB-GENE-990415-88	215	ran "ras-related nuclear prote	0.535	0.958	0.878	2e-97
UNIPROTKB|Q3T054	216	RAN "GTP-binding nuclear prote	0.535	0.953	0.884	2.5e-97
UNIPROTKB|P62825	216	RAN "GTP-binding nuclear prote	0.535	0.953	0.884	2.5e-97
UNIPROTKB|P62826	216	RAN "GTP-binding nuclear prote	0.535	0.953	0.884	2.5e-97
UNIPROTKB|F1RFQ7	216	RAN "GTP-binding nuclear prote	0.535	0.953	0.884	2.5e-97
MGI|MGI:1333112	216	Ran "RAN, member RAS oncogene	0.535	0.953	0.884	2.5e-97

FB|FBgn0020255 Ran "Ran" [Drosophila melanogaster (taxid:7227)]

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 189/207 (91%), Positives = 200/207 (96%)

Query:     1 MAAE-MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
             MA E  D+P+FKCVLVGDGGTGKTTFVKRH+TGEFEKKYVATLGVEVHPL+FHTNRGAIR
Sbjct:     1 MAQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIR 60

Query:    60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
             FNVWDTAGQEKFGGLRDGYYIQGQCA+IMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct:    61 FNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120

Query:   120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
             GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL+GDPNLEFVAMP
Sbjct:   121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMP 180

Query:   180 ALLPPEVTMDPQWQSRIEQDLKEAQET 206
             ALLPPEV MD  WQ++IE+DL+EAQ T
Sbjct:   181 ALLPPEVKMDKDWQAQIERDLQEAQAT 207

GO:0003924 "GTPase activity" evidence=ISS

GO:0007049 "cell cycle" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0005880 "nuclear microtubule" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0000212 "meiotic spindle organization" evidence=IMP

GO:0072686 "mitotic spindle" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|P52301 ran "GTP-binding nuclear protein Ran" [Xenopus laevis (taxid:8355)]

 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 184/207 (88%), Positives = 191/207 (92%)

Query:     1 MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
             MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct:     1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60

Query:    60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
             FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct:    61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120

Query:   120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
             GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct:   121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

Query:   180 ALLPPEVTMDPQWQSRIEQDLKEAQET 206
             AL PPEV MDP   ++ EQDL+ AQ T
Sbjct:   181 ALAPPEVVMDPALAAQYEQDLQNAQAT 207

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NEV9 RAN "GTP-binding nuclear protein Ran" [Gallus gallus (taxid:9031)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 184/207 (88%), Positives = 191/207 (92%)

Query:     1 MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
             MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct:     3 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62

Query:    60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
             FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct:    63 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 122

Query:   120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
             GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct:   123 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182

Query:   180 ALLPPEVTMDPQWQSRIEQDLKEAQET 206
             AL PPEV MDP   ++ EQDL+ AQ T
Sbjct:   183 ALAPPEVVMDPALAAQYEQDLQIAQTT 209

GO:0003924 "GTPase activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0032092 "positive regulation of protein binding" evidence=IEA

UNIPROTKB|P42558 RAN "GTP-binding nuclear protein Ran" [Gallus gallus (taxid:9031)]

 Score = 971 (346.9 bits), Expect = 9.4e-98, P = 9.4e-98
 Identities = 184/207 (88%), Positives = 191/207 (92%)

Query:     1 MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
             MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct:     1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60

Query:    60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
             FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct:    61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120

Query:   120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
             GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct:   121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

Query:   180 ALLPPEVTMDPQWQSRIEQDLKEAQET 206
             AL PPEV MDP   ++ EQDL+ AQ T
Sbjct:   181 ALAPPEVVMDPALAAQYEQDLQIAQTT 207

GO:0003924 "GTPase activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-990415-88 ran "ras-related nuclear protein" [Danio rerio (taxid:7955)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 181/206 (87%), Positives = 187/206 (90%)

Query:     1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
             MA       FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAI++
Sbjct:     1 MAENEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKY 60

Query:    61 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
             NVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCG
Sbjct:    61 NVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCG 120

Query:   121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
             NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV MPA
Sbjct:   121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPA 180

Query:   181 LLPPEVTMDPQWQSRIEQDLKEAQET 206
             L PPE+ MDP   ++ E DLK A ET
Sbjct:   181 LAPPEIAMDPTLAAQYEHDLKVASET 206

GO:0005525 "GTP binding" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q3T054 RAN "GTP-binding nuclear protein Ran" [Bos taurus (taxid:9913)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 183/207 (88%), Positives = 190/207 (91%)

Query:     1 MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
             MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct:     1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60

Query:    60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
             FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct:    61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120

Query:   120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
             GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct:   121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

Query:   180 ALLPPEVTMDPQWQSRIEQDLKEAQET 206
             AL PPEV MDP   ++ E DL+ AQ T
Sbjct:   181 ALAPPEVVMDPALAAQYEHDLEVAQTT 207

GO:0042470 "melanosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|P62825 RAN "GTP-binding nuclear protein Ran" [Canis lupus familiaris (taxid:9615)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 183/207 (88%), Positives = 190/207 (91%)

Query:     1 MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
             MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct:     1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60

Query:    60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
             FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct:    61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120

Query:   120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
             GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct:   121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

Query:   180 ALLPPEVTMDPQWQSRIEQDLKEAQET 206
             AL PPEV MDP   ++ E DL+ AQ T
Sbjct:   181 ALAPPEVVMDPALAAQYEHDLEVAQTT 207

GO:0042470 "melanosome" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|P62826 RAN "GTP-binding nuclear protein Ran" [Homo sapiens (taxid:9606)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 183/207 (88%), Positives = 190/207 (91%)

Query:     1 MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
             MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct:     1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60

Query:    60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
             FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct:    61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120

Query:   120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
             GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct:   121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

Query:   180 ALLPPEVTMDPQWQSRIEQDLKEAQET 206
             AL PPEV MDP   ++ E DL+ AQ T
Sbjct:   181 ALAPPEVVMDPALAAQYEHDLEVAQTT 207

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0000785 "chromatin" evidence=IDA

GO:0003924 "GTPase activity" evidence=TAS

GO:0005643 "nuclear pore" evidence=NAS

GO:0006259 "DNA metabolic process" evidence=TAS

GO:0006405 "RNA export from nucleus" evidence=NAS

GO:0006611 "protein export from nucleus" evidence=IDA;NAS

GO:0007052 "mitotic spindle organization" evidence=TAS

GO:0007067 "mitosis" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0003713 "transcription coactivator activity" evidence=NAS

GO:0030521 "androgen receptor signaling pathway" evidence=NAS

GO:0050681 "androgen receptor binding" evidence=NAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=NAS

GO:0003682 "chromatin binding" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0032092 "positive regulation of protein binding" evidence=IDA

UNIPROTKB|F1RFQ7 RAN "GTP-binding nuclear protein Ran" [Sus scrofa (taxid:9823)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 183/207 (88%), Positives = 190/207 (91%)

Query:     1 MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
             MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct:     1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60

Query:    60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
             FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct:    61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120

Query:   120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
             GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct:   121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

Query:   180 ALLPPEVTMDPQWQSRIEQDLKEAQET 206
             AL PPEV MDP   ++ E DL+ AQ T
Sbjct:   181 ALAPPEVVMDPALAAQYEHDLEVAQTT 207

GO:0032092 "positive regulation of protein binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000785 "chromatin" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

MGI|MGI:1333112 Ran "RAN, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 183/207 (88%), Positives = 190/207 (91%)

Query:     1 MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
             MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct:     1 MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60

Query:    60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
             FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct:    61 FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120

Query:   120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
             GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct:   121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 180

Query:   180 ALLPPEVTMDPQWQSRIEQDLKEAQET 206
             AL PPEV MDP   ++ E DL+ AQ T
Sbjct:   181 ALAPPEVVMDPALAAQYEHDLEVAQTT 207

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IDA

GO:0006611 "protein export from nucleus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0032092 "positive regulation of protein binding" evidence=ISO

GO:0034613 "cellular protein localization" evidence=IMP

GO:0034629 "cellular protein complex localization" evidence=IMP

GO:0043234 "protein complex" evidence=ISO

GO:0051301 "cell division" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3T054	RAN_BOVIN	No assigned EC number	0.9033	0.4207	0.75	yes	N/A
P79735	RAN_DANRE	No assigned EC number	0.8744	0.4415	0.7906	yes	N/A
P41916	RAN1_ARATH	No assigned EC number	0.7594	0.4337	0.7556	yes	N/A
Q7F7I7	RAN1_ORYSJ	No assigned EC number	0.7958	0.3792	0.6606	yes	N/A
Q9VZ23	RAN_DROME	No assigned EC number	0.9074	0.5584	0.9953	yes	N/A
O17915	RAN_CAEEL	No assigned EC number	0.8543	0.4181	0.7488	yes	N/A
Q6FR65	GSP1_CANGA	No assigned EC number	0.7962	0.5532	0.9953	yes	N/A
Q4R4M9	RAN_MACFA	No assigned EC number	0.9033	0.4207	0.75	N/A	N/A
Q7GD79	RAN2_ORYSJ	No assigned EC number	0.8010	0.3636	0.6334	yes	N/A
Q74ZA9	GSP1_ASHGO	No assigned EC number	0.7916	0.5532	0.9953	yes	N/A
P41917	RAN2_ARATH	No assigned EC number	0.7714	0.4285	0.7466	yes	N/A
P52301	RAN_XENLA	No assigned EC number	0.9082	0.4207	0.75	N/A	N/A
P28748	SPI1_SCHPO	No assigned EC number	0.8055	0.5584	0.9953	yes	N/A
P32836	GSP2_YEAST	No assigned EC number	0.8009	0.5454	0.9545	yes	N/A
P32835	GSP1_YEAST	No assigned EC number	0.7953	0.5558	0.9771	yes	N/A
Q5R556	RAN_PONAB	No assigned EC number	0.9033	0.4207	0.75	yes	N/A
P62828	RAN_RAT	No assigned EC number	0.9033	0.4207	0.75	yes	N/A
Q69XM7	RAN3_ORYSJ	No assigned EC number	0.7264	0.4181	0.7123	yes	N/A
P62825	RAN_CANFA	No assigned EC number	0.9033	0.4207	0.75	yes	N/A
P62826	RAN_HUMAN	No assigned EC number	0.9033	0.4207	0.75	yes	N/A
P62827	RAN_MOUSE	No assigned EC number	0.9033	0.4207	0.75	yes	N/A
Q9YGC0	RAN_SALSA	No assigned EC number	0.9033	0.4207	0.7534	N/A	N/A
Q8H156	RAN3_ARATH	No assigned EC number	0.7666	0.4285	0.7466	yes	N/A
P33519	RAN_DICDI	No assigned EC number	0.6990	0.4181	0.7594	yes	N/A
Q8TFK3	GSP1_YARLI	No assigned EC number	0.7788	0.4233	0.7616	yes	N/A
P42558	RAN_CHICK	No assigned EC number	0.9082	0.4207	0.75	yes	N/A
P38545	RAN_PLAFA	No assigned EC number	0.6698	0.5480	0.9859	yes	N/A
Q6GL85	RAN_XENTR	No assigned EC number	0.9033	0.4207	0.75	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	385
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-158
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	1e-150
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-143
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-132
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-109
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	1e-102
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-96
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	2e-86
pfam00071	162	pfam00071, Ras, Ras family	5e-62
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-48
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-39
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-37
pfam00071	162	pfam00071, Ras, Ras family	4e-35
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	5e-31
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	9e-30
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-28
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	1e-27
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-27
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-27
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-27
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	6e-27
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	6e-27
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	1e-26
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	2e-26
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	7e-26
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	8e-26
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-25
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	2e-25
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	6e-25
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	9e-24
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-23
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	2e-23
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	2e-23
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-23
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	4e-23
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	4e-23
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-22
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	1e-22
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-22
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	8e-22
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-21
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-21
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	4e-21
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	9e-21
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	2e-20
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-20
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-20
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	3e-20
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	8e-20
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	8e-20
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-19
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-19
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-19
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	3e-19
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-18
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-18
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-18
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-18
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-18
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	3e-18
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	1e-17
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	1e-17
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	5e-17
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-17
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	6e-17
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-16
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	3e-16
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	4e-16
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	6e-16
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	6e-16
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	1e-15
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-15
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-15
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-15
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	3e-15
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	4e-15
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	4e-15
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-15
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	4e-15
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	7e-15
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	1e-14
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-14
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	2e-14
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-14
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	3e-14
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-14
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	6e-14
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	7e-14
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	1e-13
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-13
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	2e-13
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-13
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	2e-13
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-13
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	3e-13
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	4e-13
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	4e-13
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	5e-13
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-13
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	8e-13
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	8e-13
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	1e-12
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	1e-12
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-12
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	2e-12
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-12
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	4e-12
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	4e-12
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	7e-12
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	1e-11
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	1e-11
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-11
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-11
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-11
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	2e-11
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-11
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-11
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	4e-11
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	8e-11
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	1e-10
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-10
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-10
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-10
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	3e-10
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-10
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-10
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	5e-10
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	1e-09
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-09
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-09
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	2e-09
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	2e-09
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-09
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	3e-09
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	3e-09
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	7e-09
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	7e-09
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-08
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	3e-08
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	3e-08
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-08
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	7e-08
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	1e-07
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	2e-07
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	3e-07
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	3e-07
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	4e-07
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	7e-07
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	9e-07
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	1e-06
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	1e-06
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	3e-06
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	4e-06
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	4e-06
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	4e-06
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	4e-06
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	6e-06
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	8e-06
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	1e-05
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-05
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-05
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	3e-05
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	4e-05
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	4e-05
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	4e-05
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	5e-05
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	6e-05
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	8e-05
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-04
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	1e-04
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	1e-04
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	1e-04
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-04
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	2e-04
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	2e-04
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-04
cd04155	174	cd04155, Arl3, Arf-like 3 (Arl3) GTPase	5e-04
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	5e-04
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	5e-04
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	6e-04
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	0.001
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	0.001
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	0.003
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	0.004

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  443 bits (1142), Expect = e-158
 Identities = 164/215 (76%), Positives = 184/215 (85%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           M    ++P FK +LVGDGG GKTTFVKRHLTGEFEKKY+ TLGVEVHPL F+TN G I F
Sbjct: 1   MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICF 60

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
           NVWDTAGQEKFGGLRDGYYI+GQCAIIMFDVTSRITYKNVPNWHRD+VRVCENIPIVL G
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVG 120

Query: 121 NKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 180
           NKVD+KDR+VKA+ I FHRKKNLQYYDISAKSNYNFEKPFLWLAR+L  DPNL FV  PA
Sbjct: 121 NKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPA 180

Query: 181 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           L P E+ +DP+  ++ E++L+ A    LPDDD+DL
Sbjct: 181 LAPEEIQIDPELVAQAEKELQAAANVPLPDDDDDL 215

Length = 215

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  423 bits (1090), Expect = e-150
 Identities = 162/211 (76%), Positives = 177/211 (83%)

Query: 5   MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWD 64
           +D PSFK V+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G IRF  WD
Sbjct: 9   VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68

Query: 65  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD 124
           TAGQEKFGGLRDGYYI GQCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD
Sbjct: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128

Query: 125 IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPP 184
           +K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PAL PP
Sbjct: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 188

Query: 185 EVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           EV +D   Q + E +L  A    LPDDD+D 
Sbjct: 189 EVQIDLAAQQQHEAELAAAAAQPLPDDDDDA 219

Length = 219

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score =  405 bits (1042), Expect = e-143
 Identities = 180/200 (90%), Positives = 188/200 (94%)

Query: 15  VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL 74
           VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG IRFNVWDTAGQEKFGGL
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 75  RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS 134
           RDGYYIQGQCAIIMFDVT+R+TYKNVPNWHRDLVRVCENIPIVLCGNKVD+KDRKVKAKS
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKS 120

Query: 135 IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQS 194
           I FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV MDP   +
Sbjct: 121 ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAA 180

Query: 195 RIEQDLKEAQETALPDDDED 214
           + E DL+ A  TALPD+D+D
Sbjct: 181 QYEHDLEVAATTALPDEDDD 200

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  376 bits (967), Expect = e-132
 Identities = 156/166 (93%), Positives = 160/166 (96%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL FHTNRG IRFNVWDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           KFGGLRDGYYIQGQCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 120

Query: 130 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 175
           VK K I FHRKKNLQYY+ISAKSNYNFEKPFLWLARKL+G+PNLEF
Sbjct: 121 VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNLEF 166

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  317 bits (814), Expect = e-109
 Identities = 126/215 (58%), Positives = 142/215 (66%), Gaps = 45/215 (20%)

Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 275
           M    ++P FK +LVGDGG GKTTFVKRHLTGEFEKKY+ TLGVEVHPL F+TN G I F
Sbjct: 1   MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICF 60

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN--------------------- 314
           NVWDTAGQEKFGGLRDGYYI+GQCAIIMFDVTSRITYKN                     
Sbjct: 61  NVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVG 120

Query: 315 ------------------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPA 350
                                   YYDISAKSNYNFEKPFLWLAR+L  DPNL FV  PA
Sbjct: 121 NKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPA 180

Query: 351 LLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 385
           L P E+ +DP+  ++ E++L+ A    LPDDD+DL
Sbjct: 181 LAPEEIQIDPELVAQAEKELQAAANVPLPDDDDDL 215

Length = 215

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  302 bits (775), Expect = e-102
 Identities = 125/211 (59%), Positives = 136/211 (64%), Gaps = 45/211 (21%)

Query: 220 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWD 279
           +D PSFK V+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G IRF  WD
Sbjct: 9   VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68

Query: 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------- 314
           TAGQEKFGGLRDGYYI GQCAIIMFDVT+R+TYKN                         
Sbjct: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128

Query: 315 --------------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPP 354
                               YY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PAL PP
Sbjct: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 188

Query: 355 EVTMDPQWQSRIEQDLKEAQETALPDDDEDL 385
           EV +D   Q + E +L  A    LPDDD+D 
Sbjct: 189 EVQIDLAAQQQHEAELAAAAAQPLPDDDDDA 219

Length = 219

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score =  286 bits (732), Expect = 1e-96
 Identities = 137/200 (68%), Positives = 144/200 (72%), Gaps = 45/200 (22%)

Query: 230 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL 289
           VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG IRFNVWDTAGQEKFGGL
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 290 RDGYYIQGQCAIIMFDVTSRITYKN----------------------------------- 314
           RDGYYIQGQCAIIMFDVT+R+TYKN                                   
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKS 120

Query: 315 ----------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQS 364
                     YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV MDP   +
Sbjct: 121 ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAA 180

Query: 365 RIEQDLKEAQETALPDDDED 384
           + E DL+ A  TALPD+D+D
Sbjct: 181 QYEHDLEVAATTALPDEDDD 200

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  259 bits (663), Expect = 2e-86
 Identities = 114/166 (68%), Positives = 118/166 (71%), Gaps = 45/166 (27%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL FHTNRG IRFNVWDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           KFGGLRDGYYIQGQCAIIMFDVTSR+TYKN                              
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 120

Query: 315 ---------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEF 345
                          YY+ISAKSNYNFEKPFLWLARKL+G+PNLEF
Sbjct: 121 VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNLEF 166

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  196 bits (500), Expect = 5e-62
 Identities = 61/161 (37%), Positives = 100/161 (62%), Gaps = 3/161 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K VLVGDGG GK++ + R    +F ++Y+ T+GV+ +      +   ++  +WDTAGQE+
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD-R 128
           F  LR  YY   Q  ++++D+TSR +++NV  W  +++R   EN+PIVL GNK D++D R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 129 KVKAKS-IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            V  +      ++  L + + SAK+N N E+ F  LAR+++
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  160 bits (408), Expect = 2e-48
 Identities = 55/159 (34%), Positives = 92/159 (57%), Gaps = 3/159 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GKT+ + R +  +F + Y +T+GV+        +   ++  +WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           +F  +   YY     AI+++DVT+R +++N+  W  +L      NIPI+L GNK D++D 
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           +  +      F ++  L +++ SAK+  N ++ F  LAR
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  140 bits (354), Expect = 1e-39
 Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 22/212 (10%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  FK V++GDGG GKTT + R +  EF + Y  T+G           R  I+  +WDTA
Sbjct: 3   MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTA 62

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSR-ITYKNVPNWHRDLVRVC-ENIPIVLCGNKVD 124
           GQE++  LR  YY      +I++D T R  + +    W  +L  +  +++PI+L GNK+D
Sbjct: 63  GQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKID 122

Query: 125 IKDR-----------------KVKAKSIVFHRKKNLQYYDISAKS--NYNFEKPFLWLAR 165
           + D                   V A   V     N    + SAKS    N  + F  L R
Sbjct: 123 LFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLR 182

Query: 166 KLIGDPNLEFVAMPALLPPEVTMDPQWQSRIE 197
           KL+ +     +    L   +   +P  Q+ + 
Sbjct: 183 KLLEEIEKLVLKN-ELRQLDRLNNPIEQAALA 213

Length = 219

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  132 bits (334), Expect = 3e-37
 Identities = 55/164 (33%), Positives = 101/164 (61%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK++ + R   G+F ++Y +T+GV+        +   ++  +WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD- 127
           +F  +   YY     A++++D+T+R +++N+ NW ++L      N+ I+L GNK D+++ 
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKSDLEEQ 120

Query: 128 RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R+V    A++  F  +  L +++ SAK+N N E+ F  LAR+++
Sbjct: 121 RQVSREEAEA--FAEEHGLPFFETSAKTNTNVEEAFEELAREIL 162

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  126 bits (319), Expect = 4e-35
 Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 48/161 (29%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K VLVGDGG GK++ + R    +F ++Y+ T+GV+ +      +   ++  +WDTAGQE+
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------- 314
           F  LR  YY   Q  ++++D+TSR +++N                               
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 315 -----------------YYDISAKSNYNFEKPFLWLARKLI 338
                            + + SAK+N N E+ F  LAR+++
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  115 bits (290), Expect = 5e-31
 Identities = 49/160 (30%), Positives = 87/160 (54%), Gaps = 4/160 (2%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGA-IRFNVWDTAGQ 68
           K ++VG+G  GK++ ++R + G F K Y  T+GV+ +   +F       +R  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           E+F  +   YY   Q  I++F  T R +++ + +W   +   C +IP+VL   K+D+ D+
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166
            V    ++    ++  L  +  S K ++N  + F +LA K
Sbjct: 122 AVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  111 bits (281), Expect = 9e-30
 Identities = 51/162 (31%), Positives = 94/162 (58%), Gaps = 3/162 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+G  GKT+ V R++  +F +K+ +T          +     I   +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  L   YY     AI+++D+T   +++ V  W ++L ++   NI +V+ GNK+D++ +
Sbjct: 61  RYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ 120

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +V +KS    + +    ++++ SAK+    E+ FL LA+++I
Sbjct: 121 RVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  109 bits (274), Expect = 1e-28
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 27/172 (15%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL-----------GVEVHPLVFHTNRGAIR 59
           K V++G GG GK+    R ++GEF ++Y  T+           G                
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYT------------ 48

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE+F  +RD Y   G   I+++ +TSR +++ + N    ++RV   E++PIV
Sbjct: 49  LDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIV 108

Query: 118 LCGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+++ R+V   +      +    + + SAK+N N ++ F  L R++
Sbjct: 109 LVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  106 bits (267), Expect = 1e-27
 Identities = 41/159 (25%), Positives = 69/159 (43%), Gaps = 48/159 (30%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GKT+ + R +  +F + Y +T+GV+        +   ++  +WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           +F  +   YY     AI+++DVT+R +++N                              
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 315 ------------------YYDISAKSNYNFEKPFLWLAR 335
                             +++ SAK+  N ++ F  LAR
Sbjct: 121 RQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  106 bits (266), Expect = 1e-27
 Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 12/166 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD   GKT  V+R  +G F ++   T+GV+            ++  +WDTAGQE
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDR 128
           +F  +   YY     AII +D+T R ++++VP+W  ++ +    N+ ++L GNK D++++
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 129 KVKAKSIVFHRKKNL-QYYDI------SAKSNYNFEKPFLWLARKL 167
               + ++F     L ++Y I      SAK + N E+ FL +A +L
Sbjct: 124 ----REVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  106 bits (266), Expect = 2e-27
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 3/163 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VL+GD   GK++ V R +  EF +   +T+G        + +   ++F +WDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKD 127
           E++  L   YY     AI+++D+TS  +++   +W ++L      NI I L GNK D++ 
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGNKADLES 120

Query: 128 -RKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            R+V  +    +  +  L + + SAK+  N  + F  +ARKL 
Sbjct: 121 KRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score =  106 bits (265), Expect = 2e-27
 Identities = 52/150 (34%), Positives = 78/150 (52%), Gaps = 1/150 (0%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K +L+GD   GK+  V+R L   +E + ++T  + ++          I  + WDTAGQE+
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV 130
           F  +   YY +    I++FDVT +ITYKN+  W+ +L      IP ++  NK+D+ D  V
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDL-DPSV 120

Query: 131 KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
             K   F  K NL  Y +SA    N  K F
Sbjct: 121 TQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  104 bits (262), Expect = 6e-27
 Identities = 50/161 (31%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+GD G GK++ + R     F++   +T+GV+        +   ++  +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKD 127
           +F  L   YY   Q  I+++DVT R T+ N+  W  +L       +   +L GNK+D ++
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 128 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R+V + +   F RK N+ + + SAK+    ++ F  L  K+
Sbjct: 121 REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  105 bits (265), Expect = 6e-27
 Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 19/192 (9%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 67
           FK +++GD G GKT+ +KR++ G F + Y AT+GV+  +  + +  N   +R  +WD AG
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNT-VVRLQLWDIAG 59

Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL---VRVC--ENIPIVLCGNK 122
           QE+FGG+   YY     AII+FDVT   T++ V  W  DL   V +   E IP +L  NK
Sbjct: 60  QERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANK 119

Query: 123 VDIKDRKVKAKSIVFHR--KKN--LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAM 178
            D+K  ++        +  K+N  + +++ SAK N N E+   +L + ++          
Sbjct: 120 CDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNIL-------KND 172

Query: 179 PALLPPEVTMDP 190
             L  PE   D 
Sbjct: 173 KGLQSPEPDEDN 184

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  103 bits (260), Expect = 1e-26
 Identities = 53/164 (32%), Positives = 92/164 (56%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   ++  +WDTAGQE
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      II++DVT + ++ NV  W +++ R   EN+  +L GNK D+ D+
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           KV    +AK   F  +  + + + SAK+  N E+ F+ +AR++ 
Sbjct: 123 KVVDYTEAKE--FADELGIPFLETSAKNATNVEEAFMTMAREIK 164

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  103 bits (258), Expect = 2e-26
 Identities = 47/156 (30%), Positives = 81/156 (51%), Gaps = 7/156 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K V +GD   GKT+ + R +   F+ +Y AT+G++      + +   +R  +WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDR 128
           +F  L   Y      A++++D+T+R ++ N   W  D+     N   IVL GNK D+ D+
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK 120

Query: 129 KVKAKSIV----FHRKKNLQYYDISAKSNYNFEKPF 160
           +    S        ++ N  + + SAK+ +N ++ F
Sbjct: 121 RQ--VSTEEGEKKAKENNAMFIETSAKAGHNVKQLF 154

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  103 bits (258), Expect = 7e-26
 Identities = 35/88 (39%), Positives = 48/88 (54%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           M  FK V++GDGG GKTT + R +  EF + Y  T+G           R  I+  +WDTA
Sbjct: 3   MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTA 62

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSR 309
           GQE++  LR  YY      +I++D T R
Sbjct: 63  GQEEYRSLRPEYYRGANGILIVYDSTLR 90

Length = 219

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  101 bits (254), Expect = 8e-26
 Identities = 52/162 (32%), Positives = 92/162 (56%), Gaps = 5/162 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G  GTGK+  + + +  +F++    T+GVE    V +    +++  +WDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK- 126
           +F  +   YY     A++++D+TSR ++  + NW  D  R     +I I+L GNK D++ 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTD-ARTLASPDIVIILVGNKKDLED 119

Query: 127 DRKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           DR+V   ++  F ++  L + + SA +  N E+ FL  AR +
Sbjct: 120 DREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  101 bits (253), Expect = 1e-25
 Identities = 53/159 (33%), Positives = 80/159 (50%), Gaps = 13/159 (8%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF     +T+GVE        +   I+  +WDTAGQE
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQE 63

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNW------HRDLVRVCENIPIVLCGNKV 123
           ++  +   YY     A++++D+T + T++NV  W      H D      NI I+L GNK 
Sbjct: 64  RYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHAD-----SNIVIMLVGNKS 118

Query: 124 DIK-DRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           D++  R V   ++  F  K  L + + SA    N E+ F
Sbjct: 119 DLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  101 bits (253), Expect = 2e-25
 Identities = 48/172 (27%), Positives = 94/172 (54%), Gaps = 18/172 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 64
            K +++GD G GKT+ + +++  +F  +Y AT+G +     F T     +   +   +WD
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTKEVTVDDRLVTLQIWD 55

Query: 65  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRD-LVRVC----ENIPIVLC 119
           TAGQE+F  L   +Y    C ++++DVT+  +++++ +W  + L++      EN P V+ 
Sbjct: 56  TAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVL 115

Query: 120 GNKVDIKDRKVKAKSIVFH---RKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           GNK+D+++++  +          K N+ Y++ SAK   N ++ F  +AR  +
Sbjct: 116 GNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLAL 167

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 99.6 bits (248), Expect = 6e-25
 Identities = 55/162 (33%), Positives = 88/162 (54%), Gaps = 3/162 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+ G GKT  V+R   G F     AT+GV+            I+  +WDTAGQE
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKDR 128
           +F  +   YY      I+ +D+T   +++ +P W R++ +   N +  +L GNK+D+ +R
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +  ++     F   +++ Y + SAK + N EK FL LA +LI
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 96.0 bits (239), Expect = 9e-24
 Identities = 36/164 (21%), Positives = 66/164 (40%), Gaps = 14/164 (8%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEF---EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           V+VG GG GK++ +   L GE          T   +V+       +  +     DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVL--VDTPGLD 58

Query: 70  KFGGLRDG-----YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD 124
           +FGGL                +++ D T R + ++            E IPI+L GNK+D
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKL-LILRRLRKEGIPIILVGNKID 117

Query: 125 IKDRKVKAK---SIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           + + +   +        +   +  +++SAK+    ++ F  L  
Sbjct: 118 LLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 95.8 bits (239), Expect = 1e-23
 Identities = 49/159 (30%), Positives = 91/159 (57%), Gaps = 3/159 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     F   +++T+G++        +   I+  +WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++D+T   +++N+ NW R++     E++  +L GNK D++++
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK 123

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           +V  K +     R+  +++ + SAK+N N E+ FL LA+
Sbjct: 124 RVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAK 162

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 95.6 bits (238), Expect = 2e-23
 Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 5/162 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +   I+  +WDTAGQE
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKD 127
            F  +   YY     A++++D+T R T+ ++ +W  D  R     N+ I+L GNK D++ 
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED-ARQHSNSNMTIMLIGNKCDLES 123

Query: 128 RKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R+     +   F R+  L + + SAK+  N E+ F+  A+++
Sbjct: 124 RREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 95.6 bits (238), Expect = 2e-23
 Identities = 52/162 (32%), Positives = 81/162 (50%), Gaps = 14/162 (8%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH----------PLVFHTNRGAIRF 60
           K + +GD G GKTTF+ R+   +F  K++ T+G++            P         +  
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVL 118
            +WDTAGQE+F  L   ++      ++MFD+TS  ++ NV NW   L     CEN  IVL
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125

Query: 119 CGNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEK 158
            GNK D+ D++  ++        K  + Y++ SA +  N EK
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 94.9 bits (236), Expect = 2e-23
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 7/158 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 6   LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLCGNKVD 124
           +F  LR  +Y    C ++ F V    +++N+ NW ++      V+  E+ P V+ GNK+D
Sbjct: 66  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 125

Query: 125 IKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPF 160
           I +R+V  +          +  Y++ SAK   N    F
Sbjct: 126 IPERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF 163

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 94.5 bits (235), Expect = 4e-23
 Identities = 55/165 (33%), Positives = 88/165 (53%), Gaps = 11/165 (6%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVA----TLGVEVHPLVFHTNRGAIRFNVWDT 65
           FK +++GD G GK+  + +      EKK++A    T+GVE    +   N   I+  +WDT
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFT----EKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDT 58

Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVD 124
           AGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I L GNK D
Sbjct: 59  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKAD 118

Query: 125 IKD-RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++  R V   ++  F  +  L + + SAK+  N E  FL  A+K+
Sbjct: 119 LEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 95.3 bits (237), Expect = 4e-23
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 2/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK++ + R     F   Y+ T+GV+        N   ++  +WDTAGQE
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           +F  +   YY      I+++DVT+  ++ NV  W +++ + C+++  VL GNK D  +RK
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERK 126

Query: 130 V--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           V     +  F  +  +  ++ SAK N N E+ F  +   ++
Sbjct: 127 VVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVL 167

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 94.6 bits (235), Expect = 1e-22
 Identities = 52/154 (33%), Positives = 79/154 (51%), Gaps = 3/154 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE            ++  +WDTAGQE
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD- 127
           ++  +   YY     A++++D+T R T+ NV  W R+L    + NI I++ GNK D+   
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHL 132

Query: 128 RKVKAK-SIVFHRKKNLQYYDISAKSNYNFEKPF 160
           R V  +       K+ L + + SA    N EK F
Sbjct: 133 RSVAEEDGQALAEKEGLSFLETSALEATNVEKAF 166

Length = 216

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 93.0 bits (232), Expect = 1e-22
 Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  + T +F  +YV T+  + +      +   +   +WDTAGQE+
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y Q    ++ F V S  +++NV   W+ ++   C N+PI+L G K+D++D
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRD 118

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 91.8 bits (229), Expect = 3e-22
 Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 21/168 (12%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRFNVW 63
           +K V++G GG GK+    + + G F   Y  T+       +E+   V          ++ 
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCL-------LDIL 53

Query: 64  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGN 121
           DTAGQE+F  +RD Y   G+  ++++ +T R +++ +  +   ++RV   +++PIVL GN
Sbjct: 54  DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGN 113

Query: 122 KVDIKD-RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           K D++  R V   + K +   R+    + + SAK   N ++ F  L R
Sbjct: 114 KCDLESERVVSTEEGKELA--RQWGCPFLETSAKERVNVDEAFYDLVR 159

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 90.5 bits (225), Expect = 8e-22
 Identities = 41/156 (26%), Positives = 75/156 (48%), Gaps = 5/156 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            K V+VGD   GK+T + R L  +    +Y           V   +    +FN+ DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRI--TYKNVPNWHRDLVRVCE-NIPIVLCGNKVDI 125
           E +  +R  YY   + ++ +FD+   +    + +    ++++   E  +PI+L GNK+D+
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 126 KDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF 160
           +D K+K     +F +        +SA++  N +  F
Sbjct: 122 RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 90.3 bits (225), Expect = 1e-21
 Identities = 47/170 (27%), Positives = 87/170 (51%), Gaps = 21/170 (12%)

Query: 8   PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRFN 61
             +K V++G GG GK+    + + G F  +Y  T+       +E+   V          +
Sbjct: 1   REYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCL-------LD 53

Query: 62  VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLC 119
           + DTAGQE+F  +RD Y   G+  ++++ +T R +++ +  +   ++RV   +++PIVL 
Sbjct: 54  ILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDVPIVLV 113

Query: 120 GNKVDIKD-RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           GNK D+++ R V   + K +   R+    + + SAK   N ++ F  L R
Sbjct: 114 GNKCDLENERVVSTEEGKELA--RQWGCPFLETSAKERINVDEAFYDLVR 161

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 91.1 bits (226), Expect = 1e-21
 Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 4/162 (2%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           FK +LVGD G GKT  + R   G F    ++AT+G++    V   +   ++  +WDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD 127
           E+F  +   YY      ++++DVT++ ++ N+  W  +++     ++ I+L GNK D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 128 RKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
            +V  +       ++  + + + SAK+  N E  F  +A++L
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 90.1 bits (223), Expect = 4e-21
 Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 6/170 (3%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           SFK +L+GD G GK++ +   ++   E     T+GV+            ++  +WDTAGQ
Sbjct: 14  SFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ 72

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIV--LCGNKVDI 125
           E+F  L   YY   Q  I+++DVT R T+ N+ + W +++     N   V  L GNKVD 
Sbjct: 73  ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132

Query: 126 KDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 173
           +  +   + + +   ++    + + SAK+  N E+ F  LA K++  P+L
Sbjct: 133 ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSL 182

Length = 211

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 87.8 bits (218), Expect = 9e-21
 Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 21/170 (12%)

Query: 8   PSFKCVLVGDGGTGKTT----FVKRHLTGEF----EKKYVATLGVEVHPLVFHTNRGAIR 59
           P++K V+VG GG GK+     F++ +   ++    E  Y     ++             R
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQW---------AR 51

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE+F  +R+ Y   G+  +++F VT R +++ V  +H  ++RV   +  P++
Sbjct: 52  LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMI 111

Query: 118 LCGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           L GNK D++  R+V + +     R+  + Y + SAK   N +K F  L R
Sbjct: 112 LVGNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 88.1 bits (218), Expect = 2e-20
 Identities = 46/124 (37%), Positives = 70/124 (56%), Gaps = 2/124 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M S KCV+VGDG  GKT  +  + T  F K+Y+ T+  + +      +   +  N+WDTA
Sbjct: 1   MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDI 125
           GQE++  LR   Y Q    II F + S  +Y+NV + WH ++   C N+PI+L G K D+
Sbjct: 60  GQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDL 119

Query: 126 KDRK 129
           ++  
Sbjct: 120 RNDA 123

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 87.8 bits (218), Expect = 2e-20
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 16/169 (9%)

Query: 8   PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG 67
              K V+VGDGG GKT  +  +  G F ++YV T+       +   N   I   +WDTAG
Sbjct: 2   LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAG 61

Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDI- 125
           QE +  LR   Y      +I + V +  +  NV + W+ ++   C   PIVL G K D+ 
Sbjct: 62  QEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDLR 121

Query: 126 KDRKVKAKS-------IVFHRKKNL-------QYYDISAKSNYNFEKPF 160
           KD+   +K        +   + +++        Y + SAK   N ++ F
Sbjct: 122 KDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 86.6 bits (214), Expect = 3e-20
 Identities = 44/158 (27%), Positives = 84/158 (53%), Gaps = 3/158 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           F+ +L+GD G GKT  + R    EF   +++T+GV+        +   +R  +WDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDI-KD 127
           ++  +   YY + Q   +++D++S  +Y+++  W  D+     E +  +L GNK D  + 
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 128 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164
           R+V   +     ++  + +++ SA +N N ++ F  L 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 86.5 bits (214), Expect = 3e-20
 Identities = 45/158 (28%), Positives = 85/158 (53%), Gaps = 11/158 (6%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY      I+M+D+T+  ++  V +W   +     +N  ++L GNK D++D 
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 129 KVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPF 160
           +V    +   R + L      ++++ SAK N N ++ F
Sbjct: 122 RV----VSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 85.3 bits (212), Expect = 8e-20
 Identities = 30/90 (33%), Positives = 56/90 (62%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK++ + R   G+F ++Y +T+GV+        +   ++  +WDTAGQE
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQE 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY     A++++D+T+R +++N
Sbjct: 61  RFRSITSSYYRGAVGALLVYDITNRESFEN 90

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 85.3 bits (211), Expect = 8e-20
 Identities = 46/163 (28%), Positives = 87/163 (53%), Gaps = 5/163 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           +K V++G GG GK+    + + G F +KY  T+       V    +  +   + DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCM-LEILDTAGTE 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 127
           +F  +RD Y   GQ  ++++ +T++ T+ ++ +    ++RV   E++P++L GNK D++D
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120

Query: 128 RKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            +V  K +     R+    + + SAK+  N  + F  L R++ 
Sbjct: 121 ERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN 163

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 85.0 bits (211), Expect = 1e-19
 Identities = 40/119 (33%), Positives = 63/119 (52%), Gaps = 2/119 (1%)

Query: 12  CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 71
            V+VGDG  GKT  +  + T  F + YV T+  E +      +   +   +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 72  GGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRK 129
             LR   Y      +I F V S  +++NV   W+ ++   C N+PI+L G K+D+++ K
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDK 118

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 84.1 bits (208), Expect = 2e-19
 Identities = 49/170 (28%), Positives = 87/170 (51%), Gaps = 21/170 (12%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--------VEVHPLVFHTNRGAIRFN 61
           +K V++G GG GK+    + ++G F +KY  T+         V+  P V           
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLE--------- 52

Query: 62  VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLC 119
           + DTAG E+F  +RD Y   GQ  I+++ + ++ T++++      +VRV   E +PI+L 
Sbjct: 53  ILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILV 112

Query: 120 GNKVDIK-DRKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           GNKVD++ +R+V  A+      +    + + SAKS     + F  + R++
Sbjct: 113 GNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 85.4 bits (211), Expect = 2e-19
 Identities = 48/161 (29%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +   I+  +WDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+  R
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +   F ++  L + + SAK+  N E+ F+  A K+
Sbjct: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167

Length = 210

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 83.9 bits (208), Expect = 3e-19
 Identities = 39/153 (25%), Positives = 85/153 (55%), Gaps = 14/153 (9%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRG-AIRFNVWDTAG 67
           K + +G+ G GK+  +KR+  G F  KY+ T+G++  V  +   + R   +R N +D +G
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKV---SVRNKEVRVNFFDLSG 58

Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC------ENIPIVLCGN 121
             ++  +R+ +Y   Q  ++++DVT R +++ + +W +++ +        ENI +V+C N
Sbjct: 59  HPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCAN 118

Query: 122 KVDIKDRKVKAKS--IVFHRKKNLQYYDISAKS 152
           K+D+   +  ++    ++   K  +Y++ SA +
Sbjct: 119 KIDLTKHRAVSEDEGRLWAESKGFKYFETSACT 151

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 83.1 bits (206), Expect = 1e-18
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 9/120 (7%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 282
           FK +++GD G GKT+ +KR++ G F + Y AT+GV+  +  + +  N   +R  +WD AG
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNT-VVRLQLWDIAG 59

Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY----DISAKSNYNFEKPF--LWLARK 336
           QE+FGG+   YY     AII+FDVT   T++       D+ +K      +P   L LA K
Sbjct: 60  QERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLANK 119

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 82.2 bits (203), Expect = 1e-18
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 10/164 (6%)

Query: 11  KCVLVGDGGTGKTTFVKR-HLTG-EFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTA 66
           +C +VGD   GK+  V+  H  G  F+K Y  T G +  V  +       ++   ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR---VCENIPIVLCGNKV 123
           GQE F  + +  + Q     +++DVT+ +++ N   W  + VR      + P VL GNK 
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRW-INRVRTHSHGLHTPGVLVGNKC 120

Query: 124 DIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           D+ DR+    A++    +   L++Y+ SAK    +E PFL LAR
Sbjct: 121 DLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 82.1 bits (203), Expect = 1e-18
 Identities = 50/170 (29%), Positives = 85/170 (50%), Gaps = 16/170 (9%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD   GKT    R   G F ++  AT+GV+        +   I+  +WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 70  KF-GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN------IPIVLCGNK 122
           +F   +   YY      + ++DVT+  ++ ++P+W    +  CE       +P +L GNK
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSW----IEECEQHSLPNEVPRILVGNK 118

Query: 123 VDIKD-RKVKA-KSIVFHRKKNLQYYDISAK---SNYNFEKPFLWLARKL 167
            D+++  +V    +  F    ++  ++ SAK    N + E  F+ LA KL
Sbjct: 119 CDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 81.7 bits (202), Expect = 2e-18
 Identities = 44/161 (27%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           +K V+VG GG GK+    + +   F  +Y  T+       V       +  ++ DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQE 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 127
           ++  +RD Y   G+  + +F + SR +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120

Query: 128 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R V  +      +   + Y + SAK+    E+ F  L R++
Sbjct: 121 RTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 81.7 bits (201), Expect = 2e-18
 Identities = 46/144 (31%), Positives = 83/144 (57%), Gaps = 6/144 (4%)

Query: 34  FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS 93
           F+  Y +T+G++      + + G +R  +WDTAGQE+F  L   Y      AI+++D+T+
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 94  RITYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD-RKVK-AKSIVFHRKKNLQYYDISA 150
           R +++N   W +D++    +++ I L GNK D+ D RKV   + +   ++ N  +++ SA
Sbjct: 65  RQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSA 124

Query: 151 KSNYNFEKPFLWLARKLIGDPNLE 174
           K+ +N +  F  +A KL   PNL+
Sbjct: 125 KAGHNIKVLFKKIAAKL---PNLD 145

Length = 176

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 82.1 bits (203), Expect = 3e-18
 Identities = 46/168 (27%), Positives = 85/168 (50%), Gaps = 19/168 (11%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGV-------EVHPLVFHTNRGAIRFNV 62
           F+ +++GD   GK++ +KR   G F +    T+GV       E+ P V       I+  +
Sbjct: 3   FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVR------IKLQL 56

Query: 63  WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLC 119
           WDTAGQE+F  +   YY      +++FD+T+R ++++V +W  +  R          +L 
Sbjct: 57  WDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEE-ARSHIQPHRPVFILV 115

Query: 120 GNKVD-IKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           G+K D    R+V + ++    +   ++Y + SA++  N E+ F  L +
Sbjct: 116 GHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQ 163

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 79.4 bits (196), Expect = 1e-17
 Identities = 43/162 (26%), Positives = 85/162 (52%), Gaps = 5/162 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K ++VG GG GK+    + +  EF + Y  T   + +      +   ++ N+ DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 127
            +  +RD Y+  G+  +++F +T   ++  +  +   ++RV   +N+P++L GNK D++D
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLED 119

Query: 128 RKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++  +         +  + Y + SAK+  N +K F  L R++
Sbjct: 120 KRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 79.9 bits (197), Expect = 1e-17
 Identities = 47/167 (28%), Positives = 76/167 (45%), Gaps = 13/167 (7%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V++GDG  GKT+ +     G F + Y  T+  E +      +  A+  ++WDTAGQE+
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD-- 127
           F  LR   Y      ++ F V +  + +NV + W  ++   C  + +VL   K D+++  
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPR 120

Query: 128 --RKVKAKSI-------VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
             R     +I       V  R    +Y + SAK N    + F   AR
Sbjct: 121 NERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 78.5 bits (193), Expect = 5e-17
 Identities = 46/162 (28%), Positives = 88/162 (54%), Gaps = 8/162 (4%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           +++G  G GKT+ ++R     F +   +T+GV+            IR  +WDTAGQE+F 
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 73  GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIK-DRKV 130
            +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + DR++
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREI 123

Query: 131 KAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 170
             +       +   +++ + SAK N+N ++ FL    KL+ D
Sbjct: 124 TRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL----KLVDD 161

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 77.6 bits (191), Expect = 5e-17
 Identities = 49/162 (30%), Positives = 76/162 (46%), Gaps = 10/162 (6%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VGD   GKT  + R     F+K Y AT+GV+     F          +WDTAGQE+
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP----IVLCGNKVDIK 126
           F  +   YY   Q  II+FD+T   + ++   W  D ++  EN P    + L G K D+ 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALK--ENDPSSVLLFLVGTKKDLS 119

Query: 127 D----RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164
                  ++  +I   R+   +Y+ +SA +  N    F  +A
Sbjct: 120 SPAQYALMEQDAIKLAREMKAEYWAVSALTGENVRDFFFRVA 161

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 77.5 bits (191), Expect = 6e-17
 Identities = 42/122 (34%), Positives = 65/122 (53%), Gaps = 2/122 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+       V    +  +   +WDTAGQ
Sbjct: 1   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK-PVNLGLWDTAGQ 59

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 60  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119

Query: 128 RK 129
            K
Sbjct: 120 DK 121

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 75.7 bits (186), Expect = 2e-16
 Identities = 48/170 (28%), Positives = 87/170 (51%), Gaps = 18/170 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL------GVEVHPLVFHTNRGAIRFNVW 63
           +K V++G GG GK+    + + G F  KY  T+       +EV               + 
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCM-------LEIL 54

Query: 64  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGN 121
           DTAG E+F  +RD Y   GQ   +++ +T++ ++ ++ +    ++RV   E++P++L GN
Sbjct: 55  DTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGN 114

Query: 122 KVDIKDRKVKAKS--IVFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 168
           K D++D +V +K       R+  N  + + SAKS  N ++ F  L R++ 
Sbjct: 115 KCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQIN 164

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 75.2 bits (185), Expect = 3e-16
 Identities = 31/86 (36%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGA-IRFNVWDTAGQ 283
           K ++VG+G  GK++ ++R + G F K Y  T+GV+ +   +F       +R  +WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSR 309
           E+F  +   YY   Q  I++F  T R
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDR 87

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 75.1 bits (185), Expect = 4e-16
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           KCVLVGDG  GKT+ +  + T  +  +YV T   +   +V   +   +R  + DTAGQ++
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           F  LR   Y      ++ F V +  +++N+   W  ++ +     PI+L G + D++ 
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 74.1 bits (182), Expect = 6e-16
 Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 1/119 (0%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K +L+GD   GK+  V+R L   +E + ++T  + ++          I  + WDTAGQE+
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD-ISAKSNYNFEKPFLWLARKLIGDPNL 343
           F  +   YY +    I++FDVT +ITYKN          Y  E P + +A K+  DP++
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV 120

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 74.9 bits (184), Expect = 6e-16
 Identities = 43/167 (25%), Positives = 84/167 (50%), Gaps = 5/167 (2%)

Query: 5   MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWD 64
           M    +K V+VG GG GK+    + +   F  +Y  T+               +  ++ D
Sbjct: 1   MASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCL-LDILD 59

Query: 65  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN--IPIVLCGNK 122
           TAGQE++  +RD Y   GQ  + ++ +TSR +++ + ++   ++RV +   +P++L GNK
Sbjct: 60  TAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNK 119

Query: 123 VDIK-DRKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
            D+  +R+V   +     +   + + + SAK   N ++ F  L R++
Sbjct: 120 CDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 74.5 bits (183), Expect = 1e-15
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V++GDGG GKT    +     F + Y  T+       V    +  +   V DTAGQE+
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCM-LEVLDTAGQEE 59

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN----IPIVLCGNKVD-I 125
           +  LRD +  +G+  I+++ +TSR T++ V  +   + RV +     +PI++ GNK D +
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKV 119

Query: 126 KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
            +R+V   +     R+   ++ + SAK+N N E+ F  L R L
Sbjct: 120 YEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 73.2 bits (180), Expect = 2e-15
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD   GKT  V+R  +G F ++   T+GV+            ++  +WDTAGQE
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY     AII +D+T R ++++
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFES 93

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 73.4 bits (181), Expect = 2e-15
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF     +T+GVE        +   I+  +WDTAGQE
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRTIQIDGKTIKAQIWDTAGQE 63

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+T + T++N
Sbjct: 64  RYRAITSAYYRGAVGALLVYDITKKSTFEN 93

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 73.7 bits (181), Expect = 3e-15
 Identities = 49/172 (28%), Positives = 88/172 (51%), Gaps = 17/172 (9%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR------GAIRFNVW 63
            K V++GDG +GKT+ ++R     F K Y  T+G++     F + R        +   VW
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLD-----FFSRRITLPGSLNVTLQVW 55

Query: 64  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN----IPIVLC 119
           D  GQ+  G + D Y    Q   +++D+T+  +++N+ +W   + +V E       +VL 
Sbjct: 56  DIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKMVLV 115

Query: 120 GNKVDIKD-RKVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
           GNK D++  R+V A K   F ++ +++   +SAK+       F  +A +L+G
Sbjct: 116 GNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLG 167

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 72.5 bits (178), Expect = 3e-15
 Identities = 44/164 (26%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           +K V++G GG GK+    + +   F + Y  T+       V    R      + DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCD-LEILDTAGTE 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 127
           +F  +R+ Y   GQ  ++++ VTS  +   +      ++R+   +N+P+VL GNK D++D
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLED 120

Query: 128 RKV--KAKSIVFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 168
            +   +   +   ++  N+ +Y+ SA+   N ++ F+ L R++I
Sbjct: 121 DRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQII 164

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 72.0 bits (177), Expect = 4e-15
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+GD G GK++ + R     F++   +T+GV+        +   ++  +WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  L   YY   Q  I+++DVT R T+ N
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDN 90

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 72.3 bits (178), Expect = 4e-15
 Identities = 29/90 (32%), Positives = 51/90 (56%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K V +GD   GKT+ + R +   F+ +Y AT+G++      + +   +R  +WDTAGQE
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYVDDKTVRLQLWDTAGQE 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  L   Y      A++++D+T+R ++ N
Sbjct: 61  RFRSLIPSYIRDSSVAVVVYDITNRQSFDN 90

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 70.9 bits (174), Expect = 4e-15
 Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 3/115 (2%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V++GD G+GK++ + + + GEF  + +   G  +       +      N+WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN---WHRDLVRVCENIPIVLCGNK 122
                  +       ++++D+T R +   V     W  +L ++   IP++L GNK
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 72.6 bits (178), Expect = 4e-15
 Identities = 42/127 (33%), Positives = 60/127 (47%), Gaps = 16/127 (12%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-------NRGAIRFNVW 63
           KCV VGDG  GKT  +  + +  F   YV        P VF         +   +   +W
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYV--------PTVFDNFSANVVVDGNTVNLGLW 54

Query: 64  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNK 122
           DTAGQE +  LR   Y      ++ F + S+ +Y+NV   W  +L      +PIVL G K
Sbjct: 55  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTK 114

Query: 123 VDIKDRK 129
           +D++D K
Sbjct: 115 LDLRDDK 121

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 71.4 bits (176), Expect = 7e-15
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VL+GD   GK++ V R +  EF +   +T+G        + +   ++F +WDTAGQ
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ 60

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           E++  L   YY     AI+++D+TS  +++
Sbjct: 61  ERYRSLAPMYYRGAAAAIVVYDITSEESFE 90

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 71.4 bits (175), Expect = 1e-14
 Identities = 31/91 (34%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           FK +LVGD G GKT  + R   G F    ++AT+G++    V   +   ++  +WDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E+F  +   YY      ++++DVT++ ++ N
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDN 91

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 28/90 (31%), Positives = 53/90 (58%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G  GTGK+  + + +  +F++    T+GVE    V +    +++  +WDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY     A++++D+TSR ++  
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNA 90

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 70.7 bits (173), Expect = 2e-14
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 7/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           +K V++G GG GK+    + ++  F   +  T+           N  A+  ++ DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPAL-LDILDTAGQA 61

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL---VRVCENIPIVLCGNKVDIK 126
           +F  +RD Y   G+  II + VT R +++    + ++L   VR+ E+IP+VL GNKVD++
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEF-KELITRVRLTEDIPLVLVGNKVDLE 120

Query: 127 D-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
             R+V   +     R+ N  +++ SA   +  +  F  L R++
Sbjct: 121 QQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREI 163

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 70.7 bits (173), Expect = 2e-14
 Identities = 40/157 (25%), Positives = 77/157 (49%), Gaps = 7/157 (4%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           K V++G    GKT+ V+R++   F    Y  T+G              +   +WDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           ++  +   YY   + AI+ +D+T   +++    W ++L  + E+  I LCG K D+ ++ 
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQD 121

Query: 130 VKAKSIVFHRKKNL------QYYDISAKSNYNFEKPF 160
              + + FH  ++       Q+++ S+K+  N ++ F
Sbjct: 122 RSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 70.2 bits (172), Expect = 3e-14
 Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 16/128 (12%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN-------VW 63
           K V+VGDG  GKT+ +     GEF ++Y        HP VF       R +       +W
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEY--------HPTVFENYVTDCRVDGKPVQLALW 54

Query: 64  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNK 122
           DTAGQE++  LR   Y +    +I F + +  + +NV   W  ++ R C N+P++L G K
Sbjct: 55  DTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLK 114

Query: 123 VDIKDRKV 130
            D++   V
Sbjct: 115 KDLRQEAV 122

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 70.3 bits (172), Expect = 3e-14
 Identities = 50/192 (26%), Positives = 87/192 (45%), Gaps = 16/192 (8%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           + V +G  G GKT  ++R L   FE K+  T+  E+H   +      +  ++ DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN--IPIVLCGNKVD-IKD 127
           F  +R      G    +++ V    +++ V     +++ V E+  +PIV+ GNK+D + +
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 128 RKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL---- 181
           R+V+A           N  + + SAK N N  + F    ++L+   NL     PAL    
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVF----KELLQQANLPSWLSPALRRRR 175

Query: 182 --LPPEVTMDPQ 191
              P E+   P 
Sbjct: 176 ESAPSEIQRRPP 187

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 69.1 bits (169), Expect = 6e-14
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 1   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 59

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D++D
Sbjct: 60  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 119

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 70.0 bits (171), Expect = 7e-14
 Identities = 31/90 (34%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE            ++  +WDTAGQE
Sbjct: 13  FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQE 72

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+T R T+ N
Sbjct: 73  RYRAITSAYYRGAVGALLVYDITKRQTFDN 102

Length = 216

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 29/83 (34%), Positives = 46/83 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+G  GKT+ V R++  +F +K+ +T          +     I   +WDTAGQE
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQE 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVT 307
           ++  L   YY     AI+++D+T
Sbjct: 61  RYHALGPIYYRDADGAILVYDIT 83

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 67.2 bits (165), Expect = 2e-13
 Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 26/106 (24%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL-----------GVEVHPLVFHTNRGAIR 274
           K V++G GG GK+    R ++GEF ++Y  T+           G                
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYT------------ 48

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITY---KNYYD 317
            ++ DTAGQE+F  +RD Y   G   I+++ +TSR ++   KN  +
Sbjct: 49  LDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIRE 94

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 31/89 (34%), Positives = 46/89 (51%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+ G GKT  V+R   G F     AT+GV+            I+  +WDTAGQE
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  +   YY      I+ +D+T   +++
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFR 96

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 67.6 bits (165), Expect = 2e-13
 Identities = 30/90 (33%), Positives = 51/90 (56%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 6   LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  LR  +Y    C ++ F V    +++N
Sbjct: 66  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQN 95

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 67.2 bits (164), Expect = 2e-13
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 8/92 (8%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVA----TLGVEVHPLVFHTNRGAIRFNVWDT 280
           FK +++GD G GK+  + +      EKK++A    T+GVE    +   N   I+  +WDT
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFT----EKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDT 58

Query: 281 AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           AGQE+F  +   YY     A++++D+T R TY
Sbjct: 59  AGQERFRAVTRSYYRGAAGALMVYDITRRSTY 90

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 68.5 bits (167), Expect = 2e-13
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 1/98 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           SFK +L+GD G GK++ +   ++   E     T+GV+            ++  +WDTAGQ
Sbjct: 14  SFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ 72

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAK 321
           E+F  L   YY   Q  I+++DVT R T+ N  D+  K
Sbjct: 73  ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGK 110

Length = 211

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 67.7 bits (165), Expect = 3e-13
 Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 2/158 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +LVGD   GK   +     G  E  Y   +G++        +   ++  +WDT+GQ 
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK-DR 128
           +F  +   Y    Q  I+++D+T+R ++  +  W +++      +P +L GN++ +   R
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR 126

Query: 129 KVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           +V  +    +  +  + ++++S   N+N  + F  LAR
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 66.5 bits (162), Expect = 4e-13
 Identities = 28/90 (31%), Positives = 52/90 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           F+ +L+GD G GKT  + R    EF   +++T+GV+        +   +R  +WDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY + Q   +++D++S  +Y++
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQH 90

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 68.2 bits (167), Expect = 4e-13
 Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 14/168 (8%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           ++ V++G    GKT  V R L G FE++Y  T+  + H  ++       + ++ DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL--VRVC------EN--IPIVLC 119
            F  +R    + G   I++F + +R +++ V      +   + C      EN  IP+V+C
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVIC 119

Query: 120 GNKVDIKD-RKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLA 164
           GNK D    R+V+   +  +    +N  Y+++SAK N N ++ F  L 
Sbjct: 120 GNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 66.0 bits (161), Expect = 5e-13
 Identities = 42/159 (26%), Positives = 81/159 (50%), Gaps = 11/159 (6%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           ++ V+ G GG GK++ V R + G F + Y+ T+  + +  V   ++      + DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKSICTLQITDTTGSH 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVR-----VCENIPIVLCGNKV 123
           +F  ++     +G   I+++ +TS+ + + + P +  +L+        E IPI+L GNK 
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEELKPIY--ELICEIKGNNLEKIPIMLVGNKC 118

Query: 124 D-IKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           D    R+V  ++     R  N  + + SAK+N+N ++ F
Sbjct: 119 DESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 65.8 bits (161), Expect = 8e-13
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   ++  +WDTAGQE
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQE 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      II++DVT + ++ N
Sbjct: 63  RFRTITSSYYRGAHGIIIVYDVTDQESFNN 92

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 66.2 bits (161), Expect = 8e-13
 Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           M S KCV+VGDG  GKT  +  + T  F K+Y+ T+  + +      +   +  N+WDTA
Sbjct: 1   MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTA 59

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQE++  LR   Y Q    II F + S  +Y+N
Sbjct: 60  GQEEYDRLRTLSYPQTNVFIICFSIASPSSYEN 92

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 65.9 bits (161), Expect = 8e-13
 Identities = 39/119 (32%), Positives = 61/119 (51%), Gaps = 10/119 (8%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K  L+GD   GKT+ + +++ GEF+++Y+ TLGV             I F++WD  GQ +
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 71  FGGLRDGYYI--QGQCAII-MFDVTSRITYKNVPNWHRDLVRVCEN--IPIVLCGNKVD 124
           F    +   +  +   AI+ MFD+T + T  ++  W+R   R      IPI L G K D
Sbjct: 62  F---INMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQ-ARGFNKTAIPI-LVGTKYD 115

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 65.2 bits (159), Expect = 1e-12
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 10/117 (8%)

Query: 228 VLVGDGGTGKTTFVKRHLTGEF---EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           V+VG GG GK++ +   L GE          T   +V+       +  +     DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVL--VDTPGLD 58

Query: 285 KFGGLRDG-----YYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARK 336
           +FGGL                +++ D T R + ++   +  +       P + +  K
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKLLILRRLRKEGIPIILVGNK 115

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 65.1 bits (159), Expect = 1e-12
 Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 2/117 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K VLVGD   GKT  ++      F + YV T+  E +   F  ++  I  ++WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK 126
           +  +R   Y      +I FD++   T  +V   W  ++   C N P++L G K D++
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLR 118

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 64.9 bits (159), Expect = 2e-12
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  + T +F  +YV T+  + +      +   +   +WDTAGQE+
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y Q    ++ F V S  +++N
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFEN 89

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 64.7 bits (157), Expect = 2e-12
 Identities = 36/119 (30%), Positives = 60/119 (50%), Gaps = 2/119 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV+VGDG  GKT  +  +    F ++YV T+  + + +            ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
            +  LR   Y      +I F V +  +++NV   W  +L     N+P +L G ++D++D
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQIDLRD 118

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 64.4 bits (157), Expect = 3e-12
 Identities = 39/125 (31%), Positives = 60/125 (48%), Gaps = 16/125 (12%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-------NRGAIRFNVW 63
           K V+VGDG  GKT  +      +F + YV        P VF         +   +   +W
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYV--------PTVFENYVADIEVDGKQVELALW 54

Query: 64  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNK 122
           DTAGQE +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK
Sbjct: 55  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNK 114

Query: 123 VDIKD 127
            D+++
Sbjct: 115 KDLRN 119

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 64.3 bits (157), Expect = 4e-12
 Identities = 30/92 (32%), Positives = 43/92 (46%)

Query: 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG 282
              K V+VGDGG GKT  +  +  G F ++YV T+       +   N   I   +WDTAG
Sbjct: 2   LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTVFENYVTTLQVPNGKIIELALWDTAG 61

Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           QE +  LR   Y      +I + V +  +  N
Sbjct: 62  QEDYDRLRPLSYPDVDVILICYSVDNPTSLDN 93

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 63.7 bits (155), Expect = 4e-12
 Identities = 32/83 (38%), Positives = 43/83 (51%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VGD   GKT  + R     F+K Y AT+GV+     F          +WDTAGQE+
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 286 FGGLRDGYYIQGQCAIIMFDVTS 308
           F  +   YY   Q  II+FD+T 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTD 84

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 63.2 bits (154), Expect = 7e-12
 Identities = 29/89 (32%), Positives = 47/89 (52%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           KCVLVGDG  GKT+ +  + T  +  +YV T   +   +V   +   +R  + DTAGQ++
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT-AFDNFSVVVLVDGKPVRLQLCDTAGQDE 60

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           F  LR   Y      ++ F V +  +++N
Sbjct: 61  FDKLRPLCYPDTDVFLLCFSVVNPSSFQN 89

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 10/95 (10%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 279
            K +++GD G GKT+ + +++  +F  +Y AT+G +     F T     +   +   +WD
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTKEVTVDDRLVTLQIWD 55

Query: 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           TAGQE+F  L   +Y    C ++++DVT+  ++++
Sbjct: 56  TAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFES 90

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 27/90 (30%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     F   +++T+G++        +   I+  +WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++D+T   +++N
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFEN 93

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 62.9 bits (153), Expect = 1e-11
 Identities = 29/90 (32%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK++ + R     F   Y+ T+GV+        N   ++  +WDTAGQE
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT+  ++ N
Sbjct: 67  RFRTITSTYYRGTHGVIVVYDVTNGESFVN 96

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 61.9 bits (150), Expect = 2e-11
 Identities = 28/93 (30%), Positives = 52/93 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           ++  +   YY      I+M+D+T+  ++    D
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQD 94

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 227 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 286
            V+VGDG  GKT  +  + T  F + YV T+  E +      +   +   +WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 287 GGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAK 321
             LR   Y      +I F V S  +++N   +  K
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFEN---VKEK 91

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 61.3 bits (149), Expect = 2e-11
 Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD   GKT    R   G F ++  AT+GV+        +   I+  +WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 285 KF-GGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F   +   YY      + ++DVT+  ++ +
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHS 93

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 39/154 (25%), Positives = 64/154 (41%), Gaps = 9/154 (5%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQE 69
           K +LVG GG GKT+  K+ +  +F+    +T G+ V            IR NVWD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDI-KDR 128
            +      +       +++FD+ +      VP W R +       P++L G  +D   D 
Sbjct: 63  IYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVILVGTHIDESCDE 122

Query: 129 KVKAKSIVFHRKKNLQ----YYDISAKSNYNFEK 158
            +  K+     KK        + +S K+     +
Sbjct: 123 DILKKA---LNKKFPAIINDIHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 28/88 (31%), Positives = 48/88 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +   I+  +WDTAGQE
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
            F  +   YY     A++++D+T R T+
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETF 92

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 61.0 bits (148), Expect = 4e-11
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V++GDG  GKT+ +     G F + Y  T+  E +      +  A+  ++WDTAGQE+
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           F  LR   Y      ++ F V +  + +N
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLEN 89

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 60.2 bits (146), Expect = 8e-11
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH----------PLVFHTNRGAIRF 275
           K + +GD G GKTTF+ R+   +F  K++ T+G++            P         +  
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAGQE+F  L   ++      ++MFD+TS  ++ N
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLN 104

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 59.3 bits (144), Expect = 1e-10
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 1/87 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            K V+VGD   GK+T + R L  +    +Y           V   +    +FN+ DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRI 310
           E +  +R  YY   + ++ +FD+   +
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILV 88

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 28/88 (31%), Positives = 48/88 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +   I+  +WDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
            F  +   YY     A++++D+T R T+
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETF 94

Length = 210

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 18/163 (11%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           + +++G  G GKTT + +   GE     + T+G  V  + +      ++F VWD  GQ+K
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT-IPTIGFNVETVEYKN----VKFTVWDVGGQDK 55

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDI 125
              L   YY      I + D + R   + +     +L ++         P+++  NK D+
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDR---ERIEEAKNELHKLLNEEELKGAPLLILANKQDL 112

Query: 126 KDRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163
                +++      +   + +       SA +    ++   WL
Sbjct: 113 PGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWL 155

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V++GD G+GK++ + + + GEF  + +   G  +       +      N+WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIG 339
                  +       ++++D+T R +  N          N  K    +   L+G
Sbjct: 61  LKFEHIIFMKWADAILLVYDLTDRESL-NEVSRLIAWLPNLRKLGGKIPVILVG 113

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 42/156 (26%), Positives = 68/156 (43%), Gaps = 27/156 (17%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K  L+GD   GKT+ + +++ GEF+++Y+ TLGV             I F++WD  GQ +
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 286 FGGLRDGYYI--QGQCAII-MFDVTSRITY---KNYYDISAKSNYNFEKPFLWLARKLIG 339
           F    +   +  +   AI+ MFD+T + T    K +Y  +   N     P       L+G
Sbjct: 62  F---INMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQARGFN-KTAIPI------LVG 111

Query: 340 DPNLEFVAMPALLPPEVTMDPQWQSRI-EQDLKEAQ 374
                F            + P+ Q  I +Q  K A+
Sbjct: 112 TKYDLF----------ADLPPEEQEEITKQARKYAK 137

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 59.2 bits (143), Expect = 3e-10
 Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 6/126 (4%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K VL+GD   GKT+ + R++   F K  V+T+G       +    G    ++WDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAF----YLKQWGPYNISIWDTAGREQ 56

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK 129
           F GL   Y       I+ +DV++  + + + +    L     E+    + GNK+D+ +  
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEG 116

Query: 130 VKAKSI 135
             A   
Sbjct: 117 ALAGQE 122

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 58.1 bits (141), Expect = 3e-10
 Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 11/157 (7%)

Query: 14  LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG 73
           LVG   +GKTT V    +G+F +  + T+G  +  +     +G +   VWD  GQ +F  
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKV----TKGNVTIKVWDLGGQPRFRS 59

Query: 74  LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVK 131
           + + Y       + + D   R   +   N   DL+     E IP+++ GNK D+      
Sbjct: 60  MWERYCRGVNAIVYVVDAADREKLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSV 119

Query: 132 AKSIVFHRKKNLQ-----YYDISAKSNYNFEKPFLWL 163
            + I     K++       Y ISAK   N +    WL
Sbjct: 120 DELIEQMNLKSITDREVSCYSISAKEKTNIDIVLDWL 156

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 57.8 bits (140), Expect = 5e-10
 Identities = 26/87 (29%), Positives = 50/87 (57%), Gaps = 6/87 (6%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRG-AIRFNVWDTAG 282
           K + +G+ G GK+  +KR+  G F  KY+ T+G++  V  +   + R   +R N +D +G
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKV---SVRNKEVRVNFFDLSG 58

Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSR 309
             ++  +R+ +Y   Q  ++++DVT R
Sbjct: 59  HPEYLEVRNEFYKDTQGVLLVYDVTDR 85

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 31/100 (31%), Positives = 55/100 (55%), Gaps = 13/100 (13%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGV-------EVHPLVFHTNRGAIRFNV 277
           F+ +++GD   GK++ +KR   G F +    T+GV       E+ P V       I+  +
Sbjct: 3   FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVR------IKLQL 56

Query: 278 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           WDTAGQE+F  +   YY      +++FD+T+R ++++ +D
Sbjct: 57  WDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHD 96

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 56.5 bits (137), Expect = 1e-09
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 22/159 (13%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K  ++G  G GK+    R LT  F  +Y   L       V   +   +   + DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQV-TIDGEQVSLEIQDTPGQQQ 59

Query: 71  FGG-------LR--DGYYIQGQCAIIMFDVTSRITYKNVPNWHR--DLVRVCE-NIPIVL 118
                     LR  DG+       ++++ +T R ++  V    +    ++  +  IP++L
Sbjct: 60  NEDPESLERSLRWADGF-------VLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVIL 112

Query: 119 CGNKVDI-KDRKV-KAKSIVFHRKKNLQYYDISAKSNYN 155
            GNK D+   R+V   +      +    ++++SA  NY 
Sbjct: 113 VGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYL 151

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 56.9 bits (138), Expect = 1e-09
 Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 19/161 (11%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN-------VW 63
           K  ++G    GK++   + + G F + Y        +P + +T    I +        + 
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESY--------YPTIENTFSKIITYKGQEYHLEIV 54

Query: 64  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGN 121
           DTAGQ+++  L   Y I     I+++ VTSR +++ V   +  ++ +   E++PIVL GN
Sbjct: 55  DTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGN 114

Query: 122 KVDIKD-RKVKAKS-IVFHRKKNLQYYDISAKSNYNFEKPF 160
           K D+   R+V A+            + + SAK N N E+ F
Sbjct: 115 KSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 57.2 bits (138), Expect = 2e-09
 Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 5/92 (5%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K VL+GD   GKT+ + R++   F K  V+T+G       +    G    ++WDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAF----YLKQWGPYNISIWDTAGREQ 56

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           F GL   Y       I+ +DV++  + +   D
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEELED 88

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 56.2 bits (135), Expect = 2e-09
 Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 4/140 (2%)

Query: 9   SFKC--VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           + KC  V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+
Sbjct: 3   NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTS 61

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           G   +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D+
Sbjct: 62  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDL 121

Query: 126 KDRKVKAKSIVFHRKKNLQY 145
           +        +  HR+  + Y
Sbjct: 122 RTDVSTLVELSNHRQTPVSY 141

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 17/98 (17%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--------VEVHPLVFHTNRGAIRFN 276
           +K V++G GG GK+    + ++G F +KY  T+         V+  P V           
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLE--------- 52

Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           + DTAG E+F  +RD Y   GQ  I+++ + ++ T+++
Sbjct: 53  ILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQD 90

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 55.5 bits (133), Expect = 3e-09
 Identities = 22/66 (33%), Positives = 40/66 (60%)

Query: 249 FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS 308
           F+  Y +T+G++      + + G +R  +WDTAGQE+F  L   Y      AI+++D+T+
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 309 RITYKN 314
           R +++N
Sbjct: 65  RQSFEN 70

Length = 176

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 55.2 bits (133), Expect = 3e-09
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 4/98 (4%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+       V    +  +   +WDTAGQ
Sbjct: 1   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK-PVNLGLWDTAGQ 59

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAK 321
           E +  LR   Y Q    +I F + S  +++N   + AK
Sbjct: 60  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN---VRAK 94

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 54.1 bits (131), Expect = 7e-09
 Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           + +++G  G GKTT + +   GE     + T+G  V  + +      ++F VWD  GQ+K
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTT-IPTIGFNVETVEYKN----VKFTVWDVGGQDK 55

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR 309
              L   YY      I + D + R
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDR 79

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 55.4 bits (133), Expect = 7e-09
 Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +       + + YV T+  E +   F  ++  I  N+WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIK 126
           +  +R   Y      +I FD++   T  +V   W  +    C N  +VL G K+D++
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMR 118

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 4/93 (4%)

Query: 226 KCVLVGDGGTGKTTFVKR-HLTG-EFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTA 281
           +C +VGD   GK+  V+  H  G  F+K Y  T G +  V  +       ++   ++D+A
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSDSVELFIFDSA 61

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQE F  + +  + Q     +++DVT+ +++ N
Sbjct: 62  GQELFSDMVENVWEQPAVVCVVYDVTNEVSFNN 94

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 26/87 (29%), Positives = 47/87 (54%)

Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
           +++G  G GKT+ ++R     F +   +T+GV+            IR  +WDTAGQE+F 
Sbjct: 4   IIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFN 63

Query: 288 GLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +   YY   +  I+++D+T + T+ +
Sbjct: 64  SITSAYYRSAKGIILVYDITKKETFDD 90

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 53.3 bits (128), Expect = 3e-08
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR------GAIRFNVW 278
            K V++GDG +GKT+ ++R     F K Y  T+G++     F + R        +   VW
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGLD-----FFSRRITLPGSLNVTLQVW 55

Query: 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           D  GQ+  G + D Y    Q   +++D+T+  +++N  D
Sbjct: 56  DIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLED 94

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 52.6 bits (126), Expect = 3e-08
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 1   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 59

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    ++ F V S  +++N
Sbjct: 60  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFEN 90

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 51.2 bits (123), Expect = 7e-08
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQE 284
           K +LVG GG GKT+  K+ +  +F+    +T G+ V            IR NVWD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 285 KF 286
            +
Sbjct: 63  IY 64

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 17/98 (17%)

Query: 223 PSFKCVLVGDGGTGKTT----FVKRHLTGEF----EKKYVATLGVEVHPLVFHTNRGAIR 274
           P++K V+VG GG GK+     F++ +   ++    E  Y     ++             R
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQW---------AR 51

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITY 312
            ++ DTAGQE+F  +R+ Y   G+  +++F VT R ++
Sbjct: 52  LDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSF 89

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 50.6 bits (121), Expect = 2e-07
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 15/90 (16%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN-------VW 278
           K V+VGDG  GKT+ +     GEF ++Y        HP VF       R +       +W
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEY--------HPTVFENYVTDCRVDGKPVQLALW 54

Query: 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTS 308
           DTAGQE++  LR   Y +    +I F + +
Sbjct: 55  DTAGQEEYERLRPLSYSKAHVILIGFAIDT 84

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 13/91 (14%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRFNVW 278
           +K V++G GG GK+    + + G F   Y  T+       +E+   V          ++ 
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCL-------LDIL 53

Query: 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 309
           DTAGQE+F  +RD Y   G+  ++++ +T R
Sbjct: 54  DTAGQEEFSAMRDQYMRTGEGFLLVYSITDR 84

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 15/96 (15%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-------NRGAIRFNVW 278
           KCV VGDG  GKT  +  + +  F   YV        P VF         +   +   +W
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYV--------PTVFDNFSANVVVDGNTVNLGLW 54

Query: 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           DTAGQE +  LR   Y      ++ F + S+ +Y+N
Sbjct: 55  DTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN 90

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 13/93 (13%)

Query: 223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRFN 276
             +K V++G GG GK+    + + G F  +Y  T+       +E+   V          +
Sbjct: 1   REYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCL-------LD 53

Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 309
           + DTAGQE+F  +RD Y   G+  ++++ +T R
Sbjct: 54  ILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDR 86

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V++G GG GK+    + + G F +KY  T+       V    +  +   + DTAG E
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCM-LEILDTAGTE 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           +F  +RD Y   GQ  ++++ +T++ T+ +  D+
Sbjct: 61  QFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDL 94

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 48.7 bits (116), Expect = 9e-07
 Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 1/85 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           K V++G    GKT+ V+R++   F    Y  T+G              +   +WDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           ++  +   YY   + AI+ +D+T  
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDS 86

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 220 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWD 279
           M    +K V+VG GG GK+    + +   F  +Y  T+               +  ++ D
Sbjct: 1   MASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCL-LDILD 59

Query: 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           TAGQE++  +RD Y   GQ  + ++ +TSR ++
Sbjct: 60  TAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSF 92

Length = 189

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 48.1 bits (114), Expect = 1e-06
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV+VGDG  GKT  +  +    F ++YV T+  + + +            ++DTAGQE
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 59

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +  LR   Y      +I F V +  +++N
Sbjct: 60  DYDRLRPLSYPMTDVFLICFSVVNPASFQN 89

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V+VG GG GK+    + +   F  +Y  T+       V       +  ++ DTAGQE
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQE 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDIS 319
           ++  +RD Y   G+  + +F + SR   K++ DI 
Sbjct: 61  EYSAMRDQYMRTGEGFLCVFAINSR---KSFEDIH 92

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 13/100 (13%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL------GVEVHPLVFHTNRGAIRFNVW 278
           +K V++G GG GK+    + + G F  KY  T+       +EV               + 
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIEDSYRKQIEVDCQQCM-------LEIL 54

Query: 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           DTAG E+F  +RD Y   GQ   +++ +T++ ++ +  D+
Sbjct: 55  DTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDL 94

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 25/116 (21%), Positives = 53/116 (45%), Gaps = 13/116 (11%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           ++ V+ G GG GK++ V R + G F + Y+ T+  + +  V   ++      + DT G  
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSKSICTLQITDTTGSH 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGD 340
           +F  ++     +G   I+++ +TS+ + +              KP   L  ++ G+
Sbjct: 61  QFPAMQRLSISKGHAFILVYSITSKQSLEEL------------KPIYELICEIKGN 104

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 46.3 bits (110), Expect = 4e-06
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K VLVGD   GKT  ++      F + YV T+  E +   F  ++  I  ++WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      +I FD++
Sbjct: 62  YDNVRPLSYPDSDAVLICFDIS 83

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 2/117 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIK 126
           +  +R   Y      ++ FD++    + + +  W  +++  C +  I+L G K D++
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLR 130

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V++GDGG GKT    +     F + Y  T+       V    +  +   V DTAGQE+
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCM-LEVLDTAGQEE 59

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +  LRD +  +G+  I+++ +TSR T+
Sbjct: 60  YTALRDQWIREGEGFILVYSITSRSTF 86

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 13/124 (10%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
             + +++G    GKTT + +   GE     + T+G  V  + +      ++F VWD  GQ
Sbjct: 14  EMRILILGLDNAGKTTILYKLKLGEI-VTTIPTIGFNVETVTY----KNVKFTVWDVGGQ 68

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 123
           E    L   Y+      I + D   R     +     +L  +       + P+++  NK 
Sbjct: 69  ESLRPLWRNYFPNTDAVIFVVDSADR---DRIEEAKEELHALLNEEELADAPLLILANKQ 125

Query: 124 DIKD 127
           D+  
Sbjct: 126 DLPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 17/140 (12%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           +++G   +GKTT +   L     +    V T+G  V    F    G + F  +D +GQ K
Sbjct: 3   LVLGLDNSGKTTIIN-QLKPSNAQSQNIVPTVGFNVE--SFKK--GNLSFTAFDMSGQGK 57

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITY-------KNVPNWHRDLVRVCENIPIVLCGNKV 123
           + GL + YY   Q  I + D + R+         + + N H D+      IPI+   NK+
Sbjct: 58  YRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLN-HPDIKH--RRIPILFYANKM 114

Query: 124 DIKDRKVKAKSIVFHRKKNL 143
           D+ D     K       +N+
Sbjct: 115 DLPDALTAVKITQLLCLENI 134

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 1/88 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K ++VG GG GK+    + +  EF + Y  T   + +      +   ++ N+ DTAGQE
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLDGEEVQLNILDTAGQE 59

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
            +  +RD Y+  G+  +++F +T   ++
Sbjct: 60  DYAAIRDNYFRSGEGFLLVFSITDMESF 87

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 40/133 (30%), Positives = 57/133 (42%), Gaps = 31/133 (23%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVA---TLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +K ++VG    GKTT + + L GE     V    T+G  V  +V+      IRF +WD  
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGE----VVHTSPTIGSNVEEIVYKN----IRFLMWDIG 67

Query: 67  GQEKFGGLRDG---YYIQGQCAIIMFDVT--SRIT------YKNVPNWHRDLVRVCENIP 115
           GQE    LR     YY      I++ D T   R+       YK +   H DL        
Sbjct: 68  GQES---LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLA--HEDL----RKAV 118

Query: 116 IVLCGNKVDIKDR 128
           +++  NK D+K  
Sbjct: 119 LLVLANKQDLKGA 131

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
             + +++G    GKTT + +   GE     + T+G  V  + +      ++F VWD  GQ
Sbjct: 14  EMRILILGLDNAGKTTILYKLKLGEI-VTTIPTIGFNVETVTY----KNVKFTVWDVGGQ 68

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSR 309
           E    L   Y+      I + D   R
Sbjct: 69  ESLRPLWRNYFPNTDAVIFVVDSADR 94

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V++G GG GK+    + ++  F   +  T+           N  A+  ++ DTAGQ 
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPAL-LDILDTAGQA 61

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  +RD Y   G+  II + VT R +++
Sbjct: 62  EFTAMRDQYMRCGEGFIICYSVTDRHSFQ 90

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           + V +G  G GKT  ++R L   FE K+  T+  E+H   +      +  ++ DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           F  +R      G    +++ V 
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVD 81

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 35/129 (27%), Positives = 55/129 (42%), Gaps = 24/129 (18%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKK---------YVATLGVEVHP--LVFHTNRGAI 58
           ++ VL+GD G GK++       G +E           Y  T+ V+     LV        
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEATLVV------- 53

Query: 59  RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL--VRVCENIPI 116
            ++ W+   QE    L D     G   +I++ VT R +++        L   R  E+IPI
Sbjct: 54  -YDHWE---QEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPI 109

Query: 117 VLCGNKVDI 125
           +L GNK D+
Sbjct: 110 ILVGNKSDL 118

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V++G GG GK+    + +   F + Y  T+       V    R      + DTAG E
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCD-LEILDTAGTE 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           +F  +R+ Y   GQ  ++++ VTS 
Sbjct: 61  QFTAMRELYIKSGQGFLLVYSVTSE 85

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 23/173 (13%)

Query: 12  CVL-VGDGGTGKTTFVKRHLTGEFEKKY--------VATLGVEVHPLVFHTNRGAIRFNV 62
           CVL +G    GKTTF+++  T +F K Y          T+G+ +  +      G  R   
Sbjct: 1   CVLILGLDNAGKTTFLEQTKT-KFSKNYKGLNPSKITPTVGLNIGTIEV----GKARLMF 55

Query: 63  WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCG 120
           WD  GQE+   L D YY +    I + D T R  +    +    ++     E +P+++  
Sbjct: 56  WDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLA 115

Query: 121 NKVDIKD-------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166
           NK D+ D       ++V    I    +++     +SA      E+   WL   
Sbjct: 116 NKQDLPDALSVAEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEGIEWLVDC 168

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 42.7 bits (100), Expect = 8e-05
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 224 SFKC--VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           + KC  V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+
Sbjct: 3   NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTS 61

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           G   +  +R   Y      +I FD++   T  +
Sbjct: 62  GSPYYDNVRPLSYPDSDAVLICFDISRPETLDS 94

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           ++ V++G    GKT  V R L G FE++Y  T+  + H  ++       + ++ DT+G  
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNH 59

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
            F  +R    + G   I++F + +R
Sbjct: 60  PFPAMRRLSILTGDVFILVFSLDNR 84

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGD   GKT  +       + + YV T+  E +   F  ++  I  N+WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      +I FD++
Sbjct: 62  YDNVRPLAYPDSDAVLICFDIS 83

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 17/91 (18%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVA---TLGVEVHPLVFHTNRGAIRFNVWDTA 281
           +K ++VG    GKTT + + L GE     V    T+G  V  +V+      IRF +WD  
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGE----VVHTSPTIGSNVEEIVYKN----IRFLMWDIG 67

Query: 282 GQEKFGGLRDG---YYIQGQCAIIMFDVTSR 309
           GQE    LR     YY      I++ D T R
Sbjct: 68  GQES---LRSSWNTYYTNTDAVILVIDSTDR 95

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 29/168 (17%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLVFHTNR----------GAI 58
            +  ++G  G GKT  V++ L  EF ++Y+ T    ++ P V  + R             
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 59  RFNVWDTAGQE----KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCE 112
           R+    TAGQE    +F GLR+      +  I+++D+ S  ++  V    + ++  R   
Sbjct: 61  RYPG--TAGQEWMDPRFRGLRN-----SRAFILVYDICSPDSFHYVKLLRQQILETRPAG 113

Query: 113 N--IPIVLCGNKVDIKDRKVKAKSIVFH---RKKNLQYYDISAKSNYN 155
           N   PIV+ GNK D +  +   + ++     +     Y + SAK N++
Sbjct: 114 NKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWH 161

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 23/88 (26%), Positives = 42/88 (47%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +LVGD   GK   +     G  E  Y   +G++        +   ++  +WDT+GQ 
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   Y    Q  I+++D+T+R ++
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSF 94

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 34/144 (23%), Positives = 55/144 (38%), Gaps = 36/144 (25%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG--AIRFN--------- 61
           ++VGD G GK++ V   + G    +   T+G  V   V H   G      N         
Sbjct: 25  LVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVG--VKHITYGSPGSSSNSIKGDSERD 82

Query: 62  ----VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN---- 113
               +WD +G E++   R  +Y Q    I + D++ R T  ++  W  +   V       
Sbjct: 83  FFVELWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASE---VAATGTFS 139

Query: 114 ------------IPIVLCGNKVDI 125
                       +P ++ GNK DI
Sbjct: 140 APLGSGGPGGLPVPYIVIGNKADI 163

Length = 334

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 29/122 (23%), Positives = 52/122 (42%), Gaps = 16/122 (13%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           +L+G    GK+T + +    E     + T+G  V  L     +  +   VWD  GQEK  
Sbjct: 3   LLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNVEML--QLEK-HLSLTVWDVGGQEK-- 56

Query: 73  GLRD--GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-----IPIVLCGNKVDI 125
            +R     Y++     +++ V S      +    ++L  + +N     +P+VL  NK D+
Sbjct: 57  -MRTVWKCYLEN-TDGLVYVVDSS-DEARLDESQKELKHILKNEHIKGVPVVLLANKQDL 113

Query: 126 KD 127
             
Sbjct: 114 PG 115

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 229 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG 288
           LVG   +GKTT V    +G+F +  + T+G  +  +     +G +   VWD  GQ +F  
Sbjct: 4   LVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKV----TKGNVTIKVWDLGGQPRFRS 59

Query: 289 LRDGYYIQGQCAIIMFD 305
           + + Y       + + D
Sbjct: 60  MWERYCRGVNAIVYVVD 76

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206721 cd04155, Arl3, Arf-like 3 (Arl3) GTPase

 Score = 40.5 bits (95), Expect = 5e-04
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 13/117 (11%)

Query: 14  LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG 73
           L+G    GKTT +K+ L  E       T G  +  +         + NVWD  GQ K   
Sbjct: 20  LLGLDNAGKTTILKQ-LASEDISHITPTQGFNIKNV----QADGFKLNVWDIGGQRKIRP 74

Query: 74  LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDI 125
               Y+      I + D   R   K      ++LV + E      +P+++  NK D+
Sbjct: 75  YWRNYFENTDVLIYVIDSADR---KRFEEAGQELVELLEEEKLAGVPVLVFANKQDL 128

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. Length = 174

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
          + V +G  G GKTT + +    EF +  + T+G  V  + +      ++F +WD  G+ K
Sbjct: 1  RVVTLGLDGAGKTTILFKLKQDEFMQP-IPTIGFNVETVEYKN----LKFTIWDVGGKHK 55

Query: 71 FGGLRDGYYIQGQCAIIMFDVTSR 94
             L   YY+  Q  + + D + R
Sbjct: 56 LRPLWKHYYLNTQAVVFVIDSSHR 79

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           + V +G  G GKTT + +    EF +  + T+G  V  + +      ++F +WD  G+ K
Sbjct: 1   RVVTLGLDGAGKTTILFKLKQDEFMQP-IPTIGFNVETVEYKN----LKFTIWDVGGKHK 55

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR 309
              L   YY+  Q  + + D + R
Sbjct: 56  LRPLWKHYYLNTQAVVFVIDSSHR 79

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 40.1 bits (94), Expect = 6e-04
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-------NRGAIRFNVW 278
           K V+VGDG  GKT  +      +F + YV        P VF         +   +   +W
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYV--------PTVFENYVADIEVDGKQVELALW 54

Query: 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           DTAGQE +  LR   Y      ++ F + S  + +N
Sbjct: 55  DTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLEN 90

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
          + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+K
Sbjct: 15 RILMVGLDAAGKTTILYKLKLGESVTT-IPTIGFNVETVTYKN----ISFTVWDVGGQDK 69

Query: 71 FGGLRDGYYIQGQCAIIMFDVTSR 94
             L   YY   Q  I + D   R
Sbjct: 70 IRPLWRHYYTNTQGLIFVVDSNDR 93

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           + ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+K
Sbjct: 15  RILMVGLDAAGKTTILYKLKLGESVTT-IPTIGFNVETVTYKN----ISFTVWDVGGQDK 69

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSR 309
              L   YY   Q  I + D   R
Sbjct: 70  IRPLWRHYYTNTQGLIFVVDSNDR 93

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 33/138 (23%), Positives = 61/138 (44%), Gaps = 28/138 (20%)

Query: 10  FKCVLVGDGGTGKTTFV-----KRHLTGEFEKKYVATLGVEVHPL--------VFHTNRG 56
            KCV+VGD   GKT  +      + LT   + + +AT    V  +        V   +R 
Sbjct: 3   IKCVVVGDNAVGKTRLICARACNKTLT---QYQLLATHVPTVWAIDQYRVCQEVLERSRD 59

Query: 57  AIR-----FNVWDTAGQEKFGGLRDGYYIQGQCAIIM--FDVTSRITYKNVPN-WHRDLV 108
            +        +WDT G       +D  +  G+  +++  F + S  + +NV   W+ ++ 
Sbjct: 60  VVDGVSVSLRLWDTFGDHD----KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIR 115

Query: 109 RVCENIPIVLCGNKVDIK 126
             C  +P++L G K+D++
Sbjct: 116 HFCPRVPVILVGCKLDLR 133

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 29/121 (23%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K  ++G  G GK+    R LT  F  +Y   L       V   +   +   + DT GQ++
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQV-TIDGEQVSLEIQDTPGQQQ 59

Query: 286 FGG-------LR--DGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARK 336
                     LR  DG+       ++++ +T R            S+++     L L R+
Sbjct: 60  NEDPESLERSLRWADGF-------VLVYSITDR------------SSFDVVSQLLQLIRE 100

Query: 337 L 337
           +
Sbjct: 101 I 101

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	385
COG1160	444	Predicted GTPases [General function prediction onl	100.0
PRK03003	472	GTP-binding protein Der; Reviewed	100.0
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	100.0
PRK00093	435	GTP-binding protein Der; Reviewed	100.0
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	100.0
KOG0084|consensus	205		100.0
KOG0080|consensus	209		99.97
KOG0092|consensus	200		99.97
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.97
KOG0084|consensus	205		99.97
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.97
KOG0094|consensus	221		99.97
KOG0080|consensus	209		99.96
KOG0098|consensus	216		99.96
KOG0092|consensus	200		99.96
KOG0098|consensus	216		99.96
KOG0078|consensus	207		99.96
KOG0078|consensus	207		99.96
KOG0394|consensus	210		99.96
KOG0079|consensus	198		99.96
KOG0094|consensus	221		99.96
KOG0086|consensus	214		99.95
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
KOG0394|consensus	210		99.95
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.95
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.95
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.95
KOG0079|consensus	198		99.95
KOG0087|consensus	222		99.95
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.95
KOG0091|consensus	213		99.95
KOG0088|consensus	218		99.95
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.95
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.95
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.94
KOG0087|consensus	222		99.94
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.94
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.94
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.94
KOG0086|consensus	214		99.94
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.94
KOG0095|consensus	213		99.94
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.94
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.94
KOG0096|consensus	216		99.94
KOG0093|consensus	193		99.94
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.94
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.94
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.94
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.94
PTZ00369	189	Ras-like protein; Provisional	99.93
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.93
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.93
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.93
KOG0097|consensus	215		99.93
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.93
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.93
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.93
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.93
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.93
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.93
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.93
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.93
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.93
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.93
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.93
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.93
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.93
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.93
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.93
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.93
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.93
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.93
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.92
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.92
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.92
KOG0093|consensus	193		99.92
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.92
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.92
KOG0095|consensus	213		99.92
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.92
PLN03110	216	Rab GTPase; Provisional	99.92
KOG0096|consensus	216		99.92
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.92
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.92
KOG0083|consensus	192		99.92
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.92
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.92
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.92
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.92
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.92
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.92
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.92
COG1159	298	Era GTPase [General function prediction only]	99.92
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.92
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.92
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.92
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.92
PLN03108	210	Rab family protein; Provisional	99.92
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.92
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.92
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.91
PRK15494	339	era GTPase Era; Provisional	99.91
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.91
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.91
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.91
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.91
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.91
PLN03118	211	Rab family protein; Provisional	99.91
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.91
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.91
KOG1707|consensus	625		99.91
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.91
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.91
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.91
KOG0091|consensus	213		99.91
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.91
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.91
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.91
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.91
KOG0088|consensus	218		99.9
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.9
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.9
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.9
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.9
PLN00223	181	ADP-ribosylation factor; Provisional	99.9
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.9
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.9
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.9
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.9
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.9
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.9
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.9
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.9
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.9
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.9
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.89
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.89
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.89
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.89
PTZ00133	182	ADP-ribosylation factor; Provisional	99.89
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.89
KOG0097|consensus	215		99.89
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.89
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.89
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.89
KOG0081|consensus	219		99.89
PTZ00369	189	Ras-like protein; Provisional	99.89
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.89
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.89
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.88
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.88
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.88
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.88
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.88
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.88
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.88
PRK00089	292	era GTPase Era; Reviewed	99.88
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.88
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.88
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.88
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.88
KOG0395|consensus	196		99.88
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.88
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.88
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.88
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.88
KOG0083|consensus	192		99.88
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.88
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.87
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.87
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.87
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.87
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.87
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.87
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.87
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.87
KOG0395|consensus	196		99.87
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.87
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.87
PLN03110	216	Rab GTPase; Provisional	99.87
KOG0393|consensus	198		99.86
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.86
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.86
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.86
KOG0393|consensus	198		99.86
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.86
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.86
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.86
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.86
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.86
PLN03108	210	Rab family protein; Provisional	99.86
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.86
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.86
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.86
PLN03118	211	Rab family protein; Provisional	99.86
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.86
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.86
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.86
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.86
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.86
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.86
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.86
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.86
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.85
PLN00223	181	ADP-ribosylation factor; Provisional	99.85
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.85
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.85
PLN00023	334	GTP-binding protein; Provisional	99.85
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.85
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.85
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.85
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.85
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.85
KOG0081|consensus	219		99.85
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.85
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.85
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.84
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.84
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.84
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.84
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.84
PTZ00133	182	ADP-ribosylation factor; Provisional	99.84
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.84
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.84
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.84
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.84
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.83
KOG4252|consensus	246		99.83
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.83
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.83
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.83
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.83
KOG0073|consensus	185		99.83
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.83
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.83
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.83
KOG1423|consensus	379		99.82
PRK12298	390	obgE GTPase CgtA; Reviewed	99.82
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.82
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.82
KOG4252|consensus	246		99.81
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.81
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.81
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.81
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.81
PRK12299	335	obgE GTPase CgtA; Reviewed	99.8
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.8
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.8
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.8
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.8
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.79
KOG0070|consensus	181		99.79
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.79
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.79
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.79
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.79
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.79
PTZ00099	176	rab6; Provisional	99.78
PRK04213	201	GTP-binding protein; Provisional	99.78
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.78
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.78
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.78
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.78
COG1100	219	GTPase SAR1 and related small G proteins [General	99.78
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.78
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.77
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.77
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.77
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.77
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.77
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.77
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.76
KOG0071|consensus	180		99.76
KOG0075|consensus	186		99.76
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.76
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.76
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.76
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.76
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.76
PRK12297	424	obgE GTPase CgtA; Reviewed	99.75
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.75
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.75
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.75
PTZ00099	176	rab6; Provisional	99.75
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.75
cd00881	189	GTP_translation_factor GTP translation factor fami	99.75
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.74
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.74
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.74
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.74
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.74
PRK03003	472	GTP-binding protein Der; Reviewed	99.74
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.74
PRK12296	500	obgE GTPase CgtA; Reviewed	99.74
COG0486	454	ThdF Predicted GTPase [General function prediction	99.74
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.74
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.74
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.73
KOG0073|consensus	185		99.73
PLN00023	334	GTP-binding protein; Provisional	99.73
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.73
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.73
PRK11058	426	GTPase HflX; Provisional	99.73
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.73
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.72
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.72
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.72
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.72
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.71
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.71
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.71
KOG1673|consensus	205		99.7
COG1100	219	GTPase SAR1 and related small G proteins [General	99.7
PRK12289	352	GTPase RsgA; Reviewed	99.7
COG1160	444	Predicted GTPases [General function prediction onl	99.69
PRK00093	435	GTP-binding protein Der; Reviewed	99.69
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.69
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.69
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.69
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.68
KOG0070|consensus	181		99.68
KOG0074|consensus	185		99.68
PRK05306	787	infB translation initiation factor IF-2; Validated	99.67
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.67
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	99.67
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.67
PRK12288	347	GTPase RsgA; Reviewed	99.67
PRK05433	600	GTP-binding protein LepA; Provisional	99.66
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.66
PRK12317	425	elongation factor 1-alpha; Reviewed	99.66
CHL00189	742	infB translation initiation factor 2; Provisional	99.65
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.65
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.65
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.65
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.65
COG0218	200	Predicted GTPase [General function prediction only	99.64
KOG3883|consensus	198		99.64
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.64
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.64
KOG0075|consensus	186		99.64
KOG0076|consensus	197		99.64
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.64
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.63
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.63
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.63
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.62
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.62
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.62
KOG4423|consensus	229		99.62
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.62
PRK15494	339	era GTPase Era; Provisional	99.62
PRK10218	607	GTP-binding protein; Provisional	99.62
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.61
KOG1673|consensus	205		99.61
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.6
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.6
COG2229	187	Predicted GTPase [General function prediction only	99.6
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.59
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.59
PRK00098	298	GTPase RsgA; Reviewed	99.58
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.58
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.57
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.57
COG1084	346	Predicted GTPase [General function prediction only	99.57
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.57
KOG0076|consensus	197		99.57
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.56
KOG0074|consensus	185		99.56
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.56
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.56
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.56
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.55
KOG1191|consensus	531		99.55
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.55
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.54
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.54
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.54
PRK04004	586	translation initiation factor IF-2; Validated	99.54
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.53
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.53
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.53
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.53
PRK12735	396	elongation factor Tu; Reviewed	99.53
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.52
KOG1489|consensus	366		99.52
KOG0072|consensus	182		99.52
COG1162	301	Predicted GTPases [General function prediction onl	99.52
KOG3883|consensus	198		99.51
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.51
KOG0071|consensus	180		99.51
PRK12736	394	elongation factor Tu; Reviewed	99.51
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.51
KOG0462|consensus	650		99.5
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.5
PRK13796	365	GTPase YqeH; Provisional	99.5
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.5
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.5
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.49
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.49
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.49
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.49
CHL00071	409	tufA elongation factor Tu	99.49
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.49
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.48
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.48
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.48
PRK04213	201	GTP-binding protein; Provisional	99.48
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.47
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.46
cd00881	189	GTP_translation_factor GTP translation factor fami	99.46
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.46
PRK09602	396	translation-associated GTPase; Reviewed	99.45
COG1161	322	Predicted GTPases [General function prediction onl	99.45
COG0486	454	ThdF Predicted GTPase [General function prediction	99.45
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.45
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.45
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.45
KOG4423|consensus	229		99.45
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.44
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.44
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.43
KOG0077|consensus	193		99.43
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.43
KOG1191|consensus	531		99.43
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.43
PRK00049	396	elongation factor Tu; Reviewed	99.43
COG2262	411	HflX GTPases [General function prediction only]	99.43
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.42
PRK12299	335	obgE GTPase CgtA; Reviewed	99.42
PLN03126	478	Elongation factor Tu; Provisional	99.42
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.42
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.42
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.41
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.41
PLN00043	447	elongation factor 1-alpha; Provisional	99.41
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.41
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.41
PLN03127	447	Elongation factor Tu; Provisional	99.4
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.39
COG1159	298	Era GTPase [General function prediction only]	99.39
PRK00089	292	era GTPase Era; Reviewed	99.39
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.39
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.39
PRK13351	687	elongation factor G; Reviewed	99.37
PRK11058	426	GTPase HflX; Provisional	99.37
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.37
PTZ00141	446	elongation factor 1- alpha; Provisional	99.37
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.37
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.37
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.36
PRK05306	787	infB translation initiation factor IF-2; Validated	99.35
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.35
COG1163	365	DRG Predicted GTPase [General function prediction	99.35
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.35
COG0536	369	Obg Predicted GTPase [General function prediction	99.34
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.33
CHL00189	742	infB translation initiation factor 2; Provisional	99.33
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.32
PRK12739	691	elongation factor G; Reviewed	99.32
COG3596	296	Predicted GTPase [General function prediction only	99.32
PRK05433	600	GTP-binding protein LepA; Provisional	99.31
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.31
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.31
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.31
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.31
KOG0072|consensus	182		99.31
PRK09866	741	hypothetical protein; Provisional	99.31
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.31
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.3
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.29
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	99.29
PRK00007	693	elongation factor G; Reviewed	99.29
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.28
PRK12297	424	obgE GTPase CgtA; Reviewed	99.28
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.28
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.27
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.26
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.26
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.26
KOG1424|consensus	562		99.25
KOG1423|consensus	379		99.25
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.24
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.23
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.22
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.22
PRK10218	607	GTP-binding protein; Provisional	99.21
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.21
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.21
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.2
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.2
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.2
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.2
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.2
KOG2484|consensus	435		99.19
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.19
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.19
PRK01889	356	GTPase RsgA; Reviewed	99.18

>COG1160 Predicted GTPases [General function prediction only]

Probab=100.00  E-value=6.2e-38  Score=282.69  Aligned_cols=279  Identities=19%  Similarity=0.170  Sum_probs=225.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc--c-------chhhhhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG--G-------LRDGYYI   80 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~--~-------~~~~~~~   80 (385)
                      ..|+|+|+||||||||+|+ +.+...+.+..++|+|+++.+....+.+..|.++||+|.+...  .       .....+.
T Consensus         4 ~~VAIVGRPNVGKSTLFNR-L~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~   82 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNR-LTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE   82 (444)
T ss_pred             CEEEEECCCCCcHHHHHHH-HhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence            6899999999999999999 6677788999999999999999999999999999999987433  1       2234557


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      .+|++|||+|.....+..  +..+..++. ..++|+++|+||+|..  .......+++..+...++.+||.||.|+.+++
T Consensus        83 eADvilfvVD~~~Git~~--D~~ia~~Lr-~~~kpviLvvNK~D~~--~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl  157 (444)
T COG1160          83 EADVILFVVDGREGITPA--DEEIAKILR-RSKKPVILVVNKIDNL--KAEELAYEFYSLGFGEPVPISAEHGRGIGDLL  157 (444)
T ss_pred             hCCEEEEEEeCCCCCCHH--HHHHHHHHH-hcCCCEEEEEEcccCc--hhhhhHHHHHhcCCCCceEeehhhccCHHHHH
Confidence            899999999998765443  334444443 3679999999999975  33445567888888999999999999999999


Q ss_pred             HHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHH
Q psy125          161 LWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTF  240 (385)
Q Consensus       161 ~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~  240 (385)
                      +.+...+. .+.-..     ..                                     .....+|++++|.||||||||
T Consensus       158 d~v~~~l~-~~e~~~-----~~-------------------------------------~~~~~ikiaiiGrPNvGKSsL  194 (444)
T COG1160         158 DAVLELLP-PDEEEE-----EE-------------------------------------EETDPIKIAIIGRPNVGKSSL  194 (444)
T ss_pred             HHHHhhcC-Cccccc-----cc-------------------------------------ccCCceEEEEEeCCCCCchHH
Confidence            99998863 211100     00                                     002358999999999999999


Q ss_pred             HHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc-----------ccccCcEEEEEEeCCCh
Q psy125          241 VKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG-----------YYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----------~~~~~~~~ilv~d~~~~  309 (385)
                      +|.++ ++-+...++..|+|++.+...+...+.++.++||||..+...+...           .+..++++++|.|.+++
T Consensus       195 iN~il-geeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~  273 (444)
T COG1160         195 INAIL-GEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEG  273 (444)
T ss_pred             HHHhc-cCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCC
Confidence            99966 5667788999999999999888877778899999999876666553           35699999999999999


Q ss_pred             hhhhh-------------------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125          310 ITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       310 ~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                      .+-++                                                 .+.+||++|.++.++|.++.+..-
T Consensus       274 ~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         274 ISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             chHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence            99888                                                 688999999999999998876443

>PRK03003 GTP-binding protein Der; Reviewed

Probab=100.00  E-value=1.7e-37  Score=296.60  Aligned_cols=277  Identities=21%  Similarity=0.233  Sum_probs=201.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc--------cccchhhhhcc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK--------FGGLRDGYYIQ   81 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~--------~~~~~~~~~~~   81 (385)
                      ++|+|+|++|||||||+|+|+++. ...+.+++|+|++........++..+.+|||||.+.        +......++.+
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~-~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~  117 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRR-EAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT  117 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcC-cccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence            699999999999999999977654 345667889999888877776777899999999763        12233456789


Q ss_pred             CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      +|++|+|+|+++..++.. ..+...+..  .+.|+++|+||+|+.....  +...++......++++||++|.|+++++.
T Consensus       118 aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~~~g~~~~~~iSA~~g~gi~eL~~  192 (472)
T PRK03003        118 ADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEA--DAAALWSLGLGEPHPVSALHGRGVGDLLD  192 (472)
T ss_pred             CCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHHhcCCCCeEEEEcCCCCCcHHHHH
Confidence            999999999998765432 233333332  5799999999999864321  22233333444567999999999999999


Q ss_pred             HHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHHH
Q psy125          162 WLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFV  241 (385)
Q Consensus       162 ~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~~  241 (385)
                      .|+..+......                                .            .......+++++|.+|||||||+
T Consensus       193 ~i~~~l~~~~~~--------------------------------~------------~~~~~~~kI~iiG~~nvGKSSLi  228 (472)
T PRK03003        193 AVLAALPEVPRV--------------------------------G------------SASGGPRRVALVGKPNVGKSSLL  228 (472)
T ss_pred             HHHhhccccccc--------------------------------c------------cccccceEEEEECCCCCCHHHHH
Confidence            998876321000                                0            00012379999999999999999


Q ss_pred             HHHhcCccccccccceeeEEEEE--EEEeCCeeEEEEEeeCCCcccc----------Cccc-ccccccCcEEEEEEeCCC
Q psy125          242 KRHLTGEFEKKYVATLGVEVHPL--VFHTNRGAIRFNVWDTAGQEKF----------GGLR-DGYYIQGQCAIIMFDVTS  308 (385)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~----------~~~~-~~~~~~~~~~ilv~d~~~  308 (385)
                      ++++...+. ...+.+|++....  .+..++  ..+.+|||||+.+.          ..+. ..+++++|++|+|||+++
T Consensus       229 n~l~~~~~~-~~s~~~gtT~d~~~~~~~~~~--~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~  305 (472)
T PRK03003        229 NKLAGEERS-VVDDVAGTTVDPVDSLIELGG--KTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEAAEVAVVLIDASE  305 (472)
T ss_pred             HHHhCCCcc-cccCCCCccCCcceEEEEECC--EEEEEEECCCccccccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence            998876542 3344555655433  344444  34689999997432          2222 135789999999999999


Q ss_pred             hhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHHHhc
Q psy125          309 RITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       309 ~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                      +.++++                                               +++|||++|.||+++|..+++.+..
T Consensus       306 ~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        306 PISEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALES  383 (472)
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            988876                                               6889999999999999999987754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=100.00  E-value=1.8e-35  Score=281.78  Aligned_cols=278  Identities=19%  Similarity=0.179  Sum_probs=204.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc--------cccchhhhhccC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK--------FGGLRDGYYIQG   82 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~--------~~~~~~~~~~~~   82 (385)
                      +|+|+|++|||||||+|+|++.. ...+.+.+|+|+++......+++..+.+|||||...        +......++..+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a   79 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA   79 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence            58999999999999999976654 556677889999988887777788899999999732        223345567889


Q ss_pred             cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           83 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      |++++|+|+.+...... ..+...+.+  .++|+++|+||+|+......  ..+++......++.+||.++.|+.+++..
T Consensus        80 d~vl~vvD~~~~~~~~d-~~i~~~l~~--~~~piilVvNK~D~~~~~~~--~~~~~~lg~~~~~~vSa~~g~gv~~ll~~  154 (429)
T TIGR03594        80 DVILFVVDGREGLTPED-EEIAKWLRK--SGKPVILVANKIDGKKEDAV--AAEFYSLGFGEPIPISAEHGRGIGDLLDA  154 (429)
T ss_pred             CEEEEEEeCCCCCCHHH-HHHHHHHHH--hCCCEEEEEECccCCccccc--HHHHHhcCCCCeEEEeCCcCCChHHHHHH
Confidence            99999999987544332 122233322  47899999999998654322  23344455558999999999999999999


Q ss_pred             HHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHHHH
Q psy125          163 LARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVK  242 (385)
Q Consensus       163 i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~~~  242 (385)
                      +...+......                                            .......++++++|.+|+|||+|++
T Consensus       155 i~~~l~~~~~~--------------------------------------------~~~~~~~~~v~ivG~~~~GKSsLin  190 (429)
T TIGR03594       155 ILELLPEEEEE--------------------------------------------EEEEDGPIKIAIIGRPNVGKSTLVN  190 (429)
T ss_pred             HHHhcCccccc--------------------------------------------ccccCCceEEEEECCCCCCHHHHHH
Confidence            88775321000                                            0001134799999999999999999


Q ss_pred             HHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc-----------ccccccCcEEEEEEeCCChhh
Q psy125          243 RHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR-----------DGYYIQGQCAIIMFDVTSRIT  311 (385)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----------~~~~~~~~~~ilv~d~~~~~s  311 (385)
                      +++.... ....+..|++.......+...+..+.+|||||+.++..+.           ..+++.+|++|+|||++++.+
T Consensus       191 ~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~  269 (429)
T TIGR03594       191 ALLGEER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGIT  269 (429)
T ss_pred             HHHCCCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCcc
Confidence            9886543 2234455666665544443334468999999987766543           126789999999999999888


Q ss_pred             hhh------------------------------------------------hheeccccCCCchHHHHHHHHHHhc
Q psy125          312 YKN------------------------------------------------YYDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       312 ~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                      +++                                                +++|||++|.||+++|.++.+....
T Consensus       270 ~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       270 EQDLRIAGLILEAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             HHHHHHHHHHHHcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            876                                                7899999999999999999886543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=100.00  E-value=1.4e-33  Score=268.97  Aligned_cols=277  Identities=19%  Similarity=0.186  Sum_probs=199.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc--------ccchhhhhcc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF--------GGLRDGYYIQ   81 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~--------~~~~~~~~~~   81 (385)
                      ++|+|+|.+|||||||+|+|++.. ...+...+|+|++.........+..+.+|||||+...        ......++.+
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~-~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~   80 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKR-DAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE   80 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-ceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            589999999999999999976654 3445667888888777666666789999999998761        1223446789


Q ss_pred             CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      +|++|+|+|+.+......  .++..+.+. .+.|+++|+||+|+....  ....+++......++++||+++.|+.+++.
T Consensus        81 ad~il~vvd~~~~~~~~~--~~~~~~l~~-~~~piilv~NK~D~~~~~--~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~  155 (435)
T PRK00093         81 ADVILFVVDGRAGLTPAD--EEIAKILRK-SNKPVILVVNKVDGPDEE--ADAYEFYSLGLGEPYPISAEHGRGIGDLLD  155 (435)
T ss_pred             CCEEEEEEECCCCCCHHH--HHHHHHHHH-cCCcEEEEEECccCccch--hhHHHHHhcCCCCCEEEEeeCCCCHHHHHH
Confidence            999999999987543321  222222222 378999999999975422  222334443334689999999999999998


Q ss_pred             HHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHHH
Q psy125          162 WLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFV  241 (385)
Q Consensus       162 ~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~~  241 (385)
                      .+.......           .+.                                  ......++++++|.+|+||||++
T Consensus       156 ~I~~~~~~~-----------~~~----------------------------------~~~~~~~~v~ivG~~n~GKStli  190 (435)
T PRK00093        156 AILEELPEE-----------EEE----------------------------------DEEDEPIKIAIIGRPNVGKSSLI  190 (435)
T ss_pred             HHHhhCCcc-----------ccc----------------------------------cccccceEEEEECCCCCCHHHHH
Confidence            887732110           000                                  00113489999999999999999


Q ss_pred             HHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc-----------ccccccCcEEEEEEeCCChh
Q psy125          242 KRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR-----------DGYYIQGQCAIIMFDVTSRI  310 (385)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----------~~~~~~~~~~ilv~d~~~~~  310 (385)
                      ++++... .....+..|++.......+...+..+.+|||||..+...+.           -.+++.+|++|+|+|++++.
T Consensus       191 n~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~  269 (435)
T PRK00093        191 NALLGEE-RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGI  269 (435)
T ss_pred             HHHhCCC-ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCC
Confidence            9988543 22334556677776655554445668899999976544332           12578999999999999988


Q ss_pred             hhhh-----------------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125          311 TYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       311 s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                      ++++                                               ++++||++|.||+++|..+.+...
T Consensus       270 ~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        270 TEQDLRIAGLALEAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CHHHHHHHHHHHHcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            8776                                               789999999999999999887543

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=100.00  E-value=3.4e-33  Score=278.94  Aligned_cols=280  Identities=20%  Similarity=0.198  Sum_probs=199.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc--------ccchhhhhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF--------GGLRDGYYI   80 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~--------~~~~~~~~~   80 (385)
                      ..+|+|+|++|||||||+|+|++. ....+.+++|+|+++......+++..+.+|||||....        ......++.
T Consensus       275 ~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~  353 (712)
T PRK09518        275 VGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAVS  353 (712)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHH
Confidence            468999999999999999997654 34566778999999988777777788999999997632        122344678


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      .+|++|+|+|+++...... ..|...+..  .+.|+++|+||+|+....  .....++.......+++||+++.|+.+++
T Consensus       354 ~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~~~~--~~~~~~~~lg~~~~~~iSA~~g~GI~eLl  428 (712)
T PRK09518        354 LADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQASE--YDAAEFWKLGLGEPYPISAMHGRGVGDLL  428 (712)
T ss_pred             hCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccccch--hhHHHHHHcCCCCeEEEECCCCCCchHHH
Confidence            9999999999986432221 134444433  589999999999985432  12233444444467899999999999999


Q ss_pred             HHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHH
Q psy125          161 LWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTF  240 (385)
Q Consensus       161 ~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~  240 (385)
                      ..|+..+.....            .                   ...+.           .....+++++|.+|||||||
T Consensus       429 ~~i~~~l~~~~~------------~-------------------~~a~~-----------~~~~~kI~ivG~~nvGKSSL  466 (712)
T PRK09518        429 DEALDSLKVAEK------------T-------------------SGFLT-----------PSGLRRVALVGRPNVGKSSL  466 (712)
T ss_pred             HHHHHhcccccc------------c-------------------ccccC-----------CCCCcEEEEECCCCCCHHHH
Confidence            999887532100            0                   00000           01236899999999999999


Q ss_pred             HHHHhcCccccccccceeeEEEEEE--EEeCCeeEEEEEeeCCCccccCc----------cc-ccccccCcEEEEEEeCC
Q psy125          241 VKRHLTGEFEKKYVATLGVEVHPLV--FHTNRGAIRFNVWDTAGQEKFGG----------LR-DGYYIQGQCAIIMFDVT  307 (385)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~Dt~G~~~~~~----------~~-~~~~~~~~~~ilv~d~~  307 (385)
                      +++++...+. .....+|++.....  +..++.  .+.+|||||+.+...          +. ..+++.+|++|+|+|++
T Consensus       467 in~l~~~~~~-~v~~~~gtT~d~~~~~~~~~~~--~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~advvilViDat  543 (712)
T PRK09518        467 LNQLTHEERA-VVNDLAGTTRDPVDEIVEIDGE--DWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIERSELALFLFDAS  543 (712)
T ss_pred             HHHHhCcccc-ccCCCCCCCcCcceeEEEECCC--EEEEEECCCcccCcccchhHHHHHHHHHHHHhhcCCEEEEEEECC
Confidence            9998866531 22334455544433  334443  467999999753211          11 12468999999999999


Q ss_pred             Chhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHHHhc
Q psy125          308 SRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       308 ~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                      ++.++++                                               .+.+||++|.||+++|..+++....
T Consensus       544 ~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        544 QPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             CCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            9988876                                               2679999999999999999997765

>KOG0084|consensus

Probab=100.00  E-value=1.8e-32  Score=218.55  Aligned_cols=126  Identities=33%  Similarity=0.595  Sum_probs=120.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|++|||||+|+.||..+.|.+.|.+|+|+++..+.+.++++.++++|||||||+||+.+...|||+|||+|+
T Consensus         8 ylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii~   87 (205)
T KOG0084|consen    8 YLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIF   87 (205)
T ss_pred             eEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEEE
Confidence            36999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||+|++.||++                                                 |+|||||++.||+++|..|
T Consensus        88 vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~l  167 (205)
T KOG0084|consen   88 VYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLTL  167 (205)
T ss_pred             EEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHHH
Confidence            999999999999                                                 8999999999999999999


Q ss_pred             HHHHhcCCCcccccC
Q psy125          334 ARKLIGDPNLEFVAM  348 (385)
Q Consensus       334 ~~~i~~~~~~~~~~~  348 (385)
                      +..+...........
T Consensus       168 a~~lk~~~~~~~~~~  182 (205)
T KOG0084|consen  168 AKELKQRKGLHVKWS  182 (205)
T ss_pred             HHHHHHhcccCCCCC
Confidence            999988776655554

>KOG0080|consensus

Probab=99.97  E-value=1.4e-31  Score=204.94  Aligned_cols=123  Identities=34%  Similarity=0.588  Sum_probs=119.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+.+|..+.|......|+|+++..+.+.+++..+++.|||||||++|+.+.+.|||+|.|+|+|
T Consensus        11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlV   90 (209)
T KOG0080|consen   11 TFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILV   90 (209)
T ss_pred             eEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEEE
Confidence            58999999999999999999999999999888999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      ||+|.|++|.+                                                 |+|||||+.+||+..|..++
T Consensus        91 YDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feelv  170 (209)
T KOG0080|consen   91 YDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEELV  170 (209)
T ss_pred             EEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHHH
Confidence            99999999988                                                 99999999999999999999


Q ss_pred             HHHhcCCCcccc
Q psy125          335 RKLIGDPNLEFV  346 (385)
Q Consensus       335 ~~i~~~~~~~~~  346 (385)
                      .+|++.+.++..
T Consensus       171 eKIi~tp~l~~~  182 (209)
T KOG0080|consen  171 EKIIETPSLWEE  182 (209)
T ss_pred             HHHhcCcchhhc
Confidence            999999987754

>KOG0092|consensus

Probab=99.97  E-value=1.6e-31  Score=212.24  Aligned_cols=122  Identities=32%  Similarity=0.603  Sum_probs=116.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+|++++|+.+||||+++.||..++|.+...+|+|..|.++.+.++...+++.||||+||++|.++.++|||+|+++|+
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAiv   83 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAIV   83 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||+|+.+||+.                                                |+|||||+|.||+++|..|+
T Consensus        84 vYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia  163 (200)
T KOG0092|consen   84 VYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIA  163 (200)
T ss_pred             EEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHH
Confidence            999999999998                                                99999999999999999999


Q ss_pred             HHHhcCCCcc
Q psy125          335 RKLIGDPNLE  344 (385)
Q Consensus       335 ~~i~~~~~~~  344 (385)
                      +.++......
T Consensus       164 ~~lp~~~~~~  173 (200)
T KOG0092|consen  164 EKLPCSDPQE  173 (200)
T ss_pred             HhccCccccc
Confidence            9998865443

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=3.2e-29  Score=216.41  Aligned_cols=205  Identities=76%  Similarity=1.265  Sum_probs=180.8

Q ss_pred             CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc
Q psy125            1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI   80 (385)
Q Consensus         1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~   80 (385)
                      |+....+..+||+++|++|||||||+++++.+.+...+.++.+.++.......+.+.+.+.+|||+|++.+...+..++.
T Consensus         1 ~~~~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~   80 (215)
T PTZ00132          1 MQQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI   80 (215)
T ss_pred             CccccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc
Confidence            56666688899999999999999999988998888889999999888887778889999999999999888888888999


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      +++++++|||+++..++..+..|+..+.....+.|+++++||+|+.......+...+....+..++++|++++.|++++|
T Consensus        81 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  160 (215)
T PTZ00132         81 KGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPF  160 (215)
T ss_pred             cCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999999998899988877667899999999999865444344445666777899999999999999999


Q ss_pred             HHHHHHHhcCCCcccccCCCCCCCC-----CCCChhhhhhhHHhHHHHHHhcCCC
Q psy125          161 LWLARKLIGDPNLEFVAMPALLPPE-----VTMDPQWQSRIEQDLKEAQETALPD  210 (385)
Q Consensus       161 ~~i~~~l~~~~~~~~~~~~~~~ep~-----~~~d~~~~~~~~~~l~~~~~~~~~~  210 (385)
                      .+|++++..+|.+++     +|||+     .++|+..+..+.+.+++...-.+++
T Consensus       161 ~~ia~~l~~~p~~~~-----ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~  210 (215)
T PTZ00132        161 LWLARRLTNDPNLVF-----VGAPALAPEEIQIDPELVAQAEKELQAAANVPLPD  210 (215)
T ss_pred             HHHHHHHhhccccee-----cCCcccCCCccccCHHHHHHHHHHHHHHhhCCCCC
Confidence            999999999999999     99999     9999999999999999876554444

>KOG0084|consensus

Probab=99.97  E-value=5e-30  Score=204.62  Aligned_cols=166  Identities=32%  Similarity=0.620  Sum_probs=152.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ...+||+|+|++|||||+|+.+|..+.|...+..|+|+++.......+++.+++++|||+|+++++.+...|++++|++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCe-EEEEcCCCCCChHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQ-YYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~~~  162 (385)
                      +|||+++.++|.++..|+.++.+.. .+.|.++|+||+|+.+.+.  ..+...++...+.+ ++++||++..++++.|..
T Consensus        87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~  166 (205)
T KOG0084|consen   87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT  166 (205)
T ss_pred             EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence            9999999999999999999998854 5679999999999977654  44566788888888 999999999999999999


Q ss_pred             HHHHHhcCCC
Q psy125          163 LARKLIGDPN  172 (385)
Q Consensus       163 i~~~l~~~~~  172 (385)
                      |+..+.....
T Consensus       167 la~~lk~~~~  176 (205)
T KOG0084|consen  167 LAKELKQRKG  176 (205)
T ss_pred             HHHHHHHhcc
Confidence            9998866533

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.97  E-value=1.8e-28  Score=211.44  Aligned_cols=205  Identities=78%  Similarity=1.274  Sum_probs=177.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      +++.+||+++|.+|||||||+++++.+.+...+.++.|.++.........+.+.+.+|||+|++.+..++..++++++++
T Consensus        10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   89 (219)
T PLN03071         10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (219)
T ss_pred             CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence            36789999999999999999999999999899999999888877777777889999999999999988888999999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      |+|||++++.+++.+..|+..+.....+.|+++|+||+|+.......+...+....+..++++||+++.|++++|.+|++
T Consensus        90 ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~  169 (219)
T PLN03071         90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (219)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999888777789999999999986543333333566677789999999999999999999999


Q ss_pred             HHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCC
Q psy125          166 KLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPD  210 (385)
Q Consensus       166 ~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~  210 (385)
                      .+.......+...+.++.+....+......+...+++.....+.+
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (219)
T PLN03071        170 KLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPD  214 (219)
T ss_pred             HHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCC
Confidence            998877776767778888888889988888888888877665443

>KOG0094|consensus

Probab=99.97  E-value=4.2e-30  Score=204.00  Aligned_cols=121  Identities=32%  Similarity=0.604  Sum_probs=116.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+|++++|+.+||||+++.||+.+.|...|.+|+|.++..+.+.+.+..+.|++||||||++|+.+.+.|+|++.++|+
T Consensus        21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi  100 (221)
T KOG0094|consen   21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI  100 (221)
T ss_pred             eEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++|+.||++                                                 |+|+|||.|.||.++|..|
T Consensus       101 VyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrI  180 (221)
T KOG0094|consen  101 VYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRI  180 (221)
T ss_pred             EEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHH
Confidence            999999999999                                                 9999999999999999999


Q ss_pred             HHHHhcCCCc
Q psy125          334 ARKLIGDPNL  343 (385)
Q Consensus       334 ~~~i~~~~~~  343 (385)
                      +..++.....
T Consensus       181 aa~l~~~~~~  190 (221)
T KOG0094|consen  181 AAALPGMEVL  190 (221)
T ss_pred             HHhccCcccc
Confidence            9998877553

>KOG0080|consensus

Probab=99.96  E-value=7.7e-29  Score=189.88  Aligned_cols=168  Identities=32%  Similarity=0.565  Sum_probs=153.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      -.+||+|||.+|||||+|+.+|..+.+.+....++|+++..+.+.+++..+++.+|||+|+++++.+...|++++.++|+
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl   89 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL   89 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      |||++.+.+|.+++.|..++.-+..  ++-.++|+||+|...++.  ..+...+++....-++++||++..|++..|..+
T Consensus        90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feel  169 (209)
T KOG0080|consen   90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEEL  169 (209)
T ss_pred             EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHH
Confidence            9999999999999999999876544  444579999999875444  567778999999999999999999999999999


Q ss_pred             HHHHhcCCCccc
Q psy125          164 ARKLIGDPNLEF  175 (385)
Q Consensus       164 ~~~l~~~~~~~~  175 (385)
                      +..+++.|.+..
T Consensus       170 veKIi~tp~l~~  181 (209)
T KOG0080|consen  170 VEKIIETPSLWE  181 (209)
T ss_pred             HHHHhcCcchhh
Confidence            999999877754

>KOG0098|consensus

Probab=99.96  E-value=3.1e-30  Score=203.02  Aligned_cols=125  Identities=28%  Similarity=0.517  Sum_probs=119.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+|++++|+.|||||+|+.||..+.|...++.|+|+++..+.+.++++.++|+||||+||+.|+++...||++|.|+||
T Consensus         5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~GalL   84 (216)
T KOG0098|consen    5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGALL   84 (216)
T ss_pred             ceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||+++++||+.                                                |+|||||++.||+|+|...+
T Consensus        85 Vydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nta  164 (216)
T KOG0098|consen   85 VYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINTA  164 (216)
T ss_pred             EEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHHH
Confidence            999999999988                                                99999999999999999999


Q ss_pred             HHHhcCCCccccc
Q psy125          335 RKLIGDPNLEFVA  347 (385)
Q Consensus       335 ~~i~~~~~~~~~~  347 (385)
                      +.|+.+.+.....
T Consensus       165 ~~Iy~~~q~g~~~  177 (216)
T KOG0098|consen  165 KEIYRKIQDGVFD  177 (216)
T ss_pred             HHHHHHHHhcccc
Confidence            9999877655443

>KOG0092|consensus

Probab=99.96  E-value=9.2e-29  Score=196.63  Aligned_cols=166  Identities=32%  Similarity=0.599  Sum_probs=150.2

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      |....+||+|+|..|||||||+-|+..+.|.+...+|+|.-+..+....+...+++.||||+|+++|..+...|++++++
T Consensus         1 ~~~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~A   80 (200)
T KOG0092|consen    1 MATREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANA   80 (200)
T ss_pred             CCcceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcE
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      +|+|||+++.++|..+..|+.++.+.. ++.-+.+|+||+|+...+.  ..+...++...+..++++||+++.|++++|.
T Consensus        81 AivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~  160 (200)
T KOG0092|consen   81 AIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQ  160 (200)
T ss_pred             EEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHH
Confidence            999999999999999999999998854 3455668999999987333  5667788999999999999999999999999


Q ss_pred             HHHHHHhcC
Q psy125          162 WLARKLIGD  170 (385)
Q Consensus       162 ~i~~~l~~~  170 (385)
                      .|++.+...
T Consensus       161 ~Ia~~lp~~  169 (200)
T KOG0092|consen  161 AIAEKLPCS  169 (200)
T ss_pred             HHHHhccCc
Confidence            999998553

>KOG0098|consensus

Probab=99.96  E-value=1.3e-28  Score=193.82  Aligned_cols=163  Identities=31%  Similarity=0.562  Sum_probs=152.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+|++++|+.|||||+|+.+|..+.|.+.+..|+|+++-...+.++.+.+++++|||+|++.+++....|++++.++|
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|||++.+++|..+..|+..+.++ .+|..+++++||+||..++.  ..+...|++..+..++++||+++.|+++.|...
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt  163 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT  163 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence            999999999999999999999986 48899999999999977654  556778999999999999999999999999999


Q ss_pred             HHHHhc
Q psy125          164 ARKLIG  169 (385)
Q Consensus       164 ~~~l~~  169 (385)
                      +..+..
T Consensus       164 a~~Iy~  169 (216)
T KOG0098|consen  164 AKEIYR  169 (216)
T ss_pred             HHHHHH
Confidence            988765

>KOG0078|consensus

Probab=99.96  E-value=2.6e-29  Score=203.84  Aligned_cols=121  Identities=31%  Similarity=0.660  Sum_probs=116.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+|++++|+++||||+++.+|..+.|...+..|+|.++..+.+.+++..+.++||||+||++|+.+...||++|+|++|
T Consensus        11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~L   90 (207)
T KOG0078|consen   11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGILL   90 (207)
T ss_pred             eEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||+|+..||++                                                |+|||||+|.||+|+|..|+
T Consensus        91 vyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La  170 (207)
T KOG0078|consen   91 VYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLA  170 (207)
T ss_pred             EEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHH
Confidence            999999999999                                                99999999999999999999


Q ss_pred             HHHhcCCCc
Q psy125          335 RKLIGDPNL  343 (385)
Q Consensus       335 ~~i~~~~~~  343 (385)
                      +.|..+...
T Consensus       171 ~~i~~k~~~  179 (207)
T KOG0078|consen  171 RDILQKLED  179 (207)
T ss_pred             HHHHhhcch
Confidence            999975443

>KOG0078|consensus

Probab=99.96  E-value=5.4e-28  Score=196.18  Aligned_cols=169  Identities=29%  Similarity=0.621  Sum_probs=154.7

Q ss_pred             CCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhcc
Q psy125            2 AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ   81 (385)
Q Consensus         2 ~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~   81 (385)
                      +.+.....+||+++|++|||||+++-+|..+.+...+..++|+.+..+.+..++..+.+.+|||.|+++++.+...|+++
T Consensus         5 ~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrg   84 (207)
T KOG0078|consen    5 AKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRG   84 (207)
T ss_pred             ccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhh
Confidence            34344567999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125           82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (385)
                      ++++++|||+++..+|+++..|+..+..+.+ ..+.+||+||+|+...+.  ......++...+..++++||++|.|+++
T Consensus        85 A~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~e  164 (207)
T KOG0078|consen   85 AMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEE  164 (207)
T ss_pred             cCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHH
Confidence            9999999999999999999999999988554 889999999999987544  5566778999999999999999999999


Q ss_pred             HHHHHHHHHhcC
Q psy125          159 PFLWLARKLIGD  170 (385)
Q Consensus       159 l~~~i~~~l~~~  170 (385)
                      .|..|++.+..+
T Consensus       165 aF~~La~~i~~k  176 (207)
T KOG0078|consen  165 AFLSLARDILQK  176 (207)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998753

>KOG0394|consensus

Probab=99.96  E-value=2.9e-29  Score=197.22  Aligned_cols=122  Identities=28%  Similarity=0.635  Sum_probs=117.3

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      +..+||+++|++|||||+|+++|..+.|...|..|+|.++.++.+.++++.+.++||||+||++|.++.-.+||++|+++
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------------hheeccccCCCc
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------------YYDISAKSNYNF  326 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------------~~e~Sak~~~~v  326 (385)
                      +|||++++.||++                                                       |+|||||.+.||
T Consensus        87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV  166 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV  166 (210)
T ss_pred             EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence            9999999999998                                                       999999999999


Q ss_pred             hHHHHHHHHHHhcCCCc
Q psy125          327 EKPFLWLARKLIGDPNL  343 (385)
Q Consensus       327 ~~~f~~l~~~i~~~~~~  343 (385)
                      +++|..+++..+.+-..
T Consensus       167 ~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  167 DEAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHHHHHHHHHhccch
Confidence            99999999999887654

>KOG0079|consensus

Probab=99.96  E-value=1e-29  Score=191.95  Aligned_cols=117  Identities=31%  Similarity=0.635  Sum_probs=114.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      ++.+|+|++|||||+|+.+|-.+.|...|..|+|.++..+.+.+++..+++.|||||||++|+.+.+.||++.||+|+||
T Consensus         9 fkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVY   88 (198)
T KOG0079|consen    9 FKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVY   88 (198)
T ss_pred             HHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEEE
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125          305 DVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARKL  337 (385)
Q Consensus       305 d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i  337 (385)
                      |+|+.+||.+                                               +||||||.+.||+..|..|++++
T Consensus        89 DVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~qv  168 (198)
T KOG0079|consen   89 DVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQV  168 (198)
T ss_pred             ECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHHH
Confidence            9999999999                                               99999999999999999999999


Q ss_pred             hcCC
Q psy125          338 IGDP  341 (385)
Q Consensus       338 ~~~~  341 (385)
                      ++.+
T Consensus       169 l~~k  172 (198)
T KOG0079|consen  169 LQAK  172 (198)
T ss_pred             HHHH
Confidence            8865

>KOG0094|consensus

Probab=99.96  E-value=9.6e-28  Score=190.62  Aligned_cols=164  Identities=30%  Similarity=0.561  Sum_probs=148.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+|++++|..+||||||+++|+.+.+...|.+|+|+++....+.+....+++.+|||.|+++++.+...|++++.++|
T Consensus        20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vav   99 (221)
T KOG0094|consen   20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAV   99 (221)
T ss_pred             ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEE
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      +|||+++..+|++...|+..++....  +.-+++|+||.||.+.+.  ..+....++..+..++++||+.|.|+.++|..
T Consensus       100 iVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrr  179 (221)
T KOG0094|consen  100 IVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRR  179 (221)
T ss_pred             EEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHH
Confidence            99999999999999999999887433  355679999999987655  33444567778889999999999999999999


Q ss_pred             HHHHHhcC
Q psy125          163 LARKLIGD  170 (385)
Q Consensus       163 i~~~l~~~  170 (385)
                      |+.++.+.
T Consensus       180 Iaa~l~~~  187 (221)
T KOG0094|consen  180 IAAALPGM  187 (221)
T ss_pred             HHHhccCc
Confidence            99987665

>KOG0086|consensus

Probab=99.95  E-value=8.2e-29  Score=188.05  Aligned_cols=119  Identities=29%  Similarity=0.608  Sum_probs=114.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+|++++|+.|.|||+|+.+|+.++|....+.|+|+++.++.+.+.++.++++||||+||++|+++...||++|-|++||
T Consensus         9 LfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLV   88 (214)
T KOG0086|consen    9 LFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   88 (214)
T ss_pred             hheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||+|+++||+.                                                |.||||++|.||+|+|...++
T Consensus        89 YD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~~  168 (214)
T KOG0086|consen   89 YDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCAR  168 (214)
T ss_pred             EeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHHH
Confidence            99999999998                                                899999999999999999999


Q ss_pred             HHhcCCC
Q psy125          336 KLIGDPN  342 (385)
Q Consensus       336 ~i~~~~~  342 (385)
                      .|+.+-.
T Consensus       169 tIl~kIE  175 (214)
T KOG0086|consen  169 TILNKIE  175 (214)
T ss_pred             HHHHHHh
Confidence            9987643

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=1.1e-26  Score=192.18  Aligned_cols=164  Identities=93%  Similarity=1.510  Sum_probs=144.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++.+.+...+.++.+.+..........+.+.+.+|||+|++.+...+..++.++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988888888899998887777777888899999999999988888888999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125           90 DVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      |++++.+++.+..|+..+.....+.|+++++||+|+..+....+...+.......++++||+++.|+++++.+|++.+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            99999999999899999887666899999999999875444444445666677799999999999999999999999887


Q ss_pred             CCCc
Q psy125          170 DPNL  173 (385)
Q Consensus       170 ~~~~  173 (385)
                      .|.+
T Consensus       161 ~~~~  164 (166)
T cd00877         161 NPNL  164 (166)
T ss_pred             cccc
Confidence            6654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG0394|consensus

Probab=99.95  E-value=2.5e-27  Score=186.31  Aligned_cols=170  Identities=28%  Similarity=0.632  Sum_probs=150.0

Q ss_pred             CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc
Q psy125            1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI   80 (385)
Q Consensus         1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~   80 (385)
                      |++......+||+++|++|+|||||+|++....|...+..++|..+..+.+.++...+.+.+|||+|++++.++.-.+++
T Consensus         1 M~~~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR   80 (210)
T KOG0394|consen    1 MSSLRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR   80 (210)
T ss_pred             CCCcCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec
Confidence            55545556699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcch---hh-hHHHHHHHHh-cCCeEEEEcC
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDR---KV-KAKSIVFHRK-KNLQYYDISA  150 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~---~~-~~~~~~~~~~-~~~~~~~~Sa  150 (385)
                      ++|+.++|||++++.+|+++..|..++....     +..|+++++||+|+...   .. ......|+.. +.+++|++||
T Consensus        81 gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSA  160 (210)
T KOG0394|consen   81 GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSA  160 (210)
T ss_pred             CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecc
Confidence            9999999999999999999999999988743     46799999999998652   22 4455666655 4569999999


Q ss_pred             CCCCChHHHHHHHHHHHhcC
Q psy125          151 KSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~  170 (385)
                      +...++...|..+++..+..
T Consensus       161 K~~~NV~~AFe~ia~~aL~~  180 (210)
T KOG0394|consen  161 KEATNVDEAFEEIARRALAN  180 (210)
T ss_pred             cccccHHHHHHHHHHHHHhc
Confidence            99999999999999987665

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.95  E-value=1.8e-26  Score=195.21  Aligned_cols=189  Identities=92%  Similarity=1.474  Sum_probs=163.2

Q ss_pred             EcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCCh
Q psy125           15 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR   94 (385)
Q Consensus        15 vG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~   94 (385)
                      +|.+|||||||+++++.+.+...+.++.|.+.....+..+.+.+.+.+|||+|++.+..++..++++++++|+|||+++.
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999998888888899999988888888888899999999999999999999999999999999999999


Q ss_pred             hhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhcCCCcc
Q psy125           95 ITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE  174 (385)
Q Consensus        95 ~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~  174 (385)
                      .++..+..|+..+.+...+.|+++|+||+|+..+....+...++...+..++++||+++.|+.++|.+|++.+.....+.
T Consensus        81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~  160 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE  160 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcccce
Confidence            99999999999988866789999999999986544333444566777889999999999999999999999998887777


Q ss_pred             cccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          175 FVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       175 ~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                      +...+++..+....++.........+.-.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (200)
T smart00176      161 FVAMPALAPPEVVMDPALAAQYEHDLEVA  189 (200)
T ss_pred             eccCcccCCcccccChhhhhhhhHHHHHH
Confidence            77778888887777777766666544433

Ran is involved in the active transport of proteins through nuclear pores.

>cd04121 Rab40 Rab40 subfamily

Probab=99.95  E-value=9.8e-27  Score=195.39  Aligned_cols=163  Identities=21%  Similarity=0.498  Sum_probs=144.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+++|..|||||||+++|..+.+...+.++.+.......+..+...+.+.+|||+|++.+..++..+++++|++|+
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999999988888888888887776777778888999999999999999989999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh--hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      |||++++.+|+++..|+..+.....+.|+++|+||.|+...+  ...+...++...+..++++||+++.|++++|.+|++
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~  164 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR  164 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            999999999999999999998766789999999999996532  244566777778889999999999999999999999


Q ss_pred             HHhcC
Q psy125          166 KLIGD  170 (385)
Q Consensus       166 ~l~~~  170 (385)
                      .+...
T Consensus       165 ~i~~~  169 (189)
T cd04121         165 IVLMR  169 (189)
T ss_pred             HHHHh
Confidence            87653

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04133 Rop_like Rop subfamily

Probab=99.95  E-value=1.4e-26  Score=192.33  Aligned_cols=159  Identities=30%  Similarity=0.529  Sum_probs=138.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|.+|||||||+.+++.+.+...+.++.+.++. .....++..+.+.+|||+|++.+..+...++++++++|+||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~-~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeE-EEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            69999999999999999999999998889999987764 34566778899999999999999999999999999999999


Q ss_pred             eCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcchh------------hhHHHHHHHHhcCC-eEEEEcCCCCCC
Q psy125           90 DVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK------------VKAKSIVFHRKKNL-QYYDISAKSNYN  155 (385)
Q Consensus        90 d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~------------~~~~~~~~~~~~~~-~~~~~Sa~~~~g  155 (385)
                      |++++.+|+++ ..|+..+.....+.|+++|+||+|+.+..            ...+...++...+. .++++||+++.|
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n  160 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN  160 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence            99999999998 57999887766789999999999986532            24455667777776 699999999999


Q ss_pred             hHHHHHHHHHHHhc
Q psy125          156 FEKPFLWLARKLIG  169 (385)
Q Consensus       156 i~~l~~~i~~~l~~  169 (385)
                      ++++|..+++.+.+
T Consensus       161 V~~~F~~~~~~~~~  174 (176)
T cd04133         161 VKAVFDAAIKVVLQ  174 (176)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998643

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0079|consensus

Probab=99.95  E-value=8.6e-28  Score=181.50  Aligned_cols=168  Identities=31%  Similarity=0.627  Sum_probs=153.6

Q ss_pred             CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc
Q psy125            1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI   80 (385)
Q Consensus         1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~   80 (385)
                      |+..|+ .-++.+|+|++|+|||+|+-+|..+.|...|..++|+++......+.+..+.+.||||.|+++++.+...|++
T Consensus         1 mar~~d-hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyr   79 (198)
T KOG0079|consen    1 MARDYD-HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYR   79 (198)
T ss_pred             CcccHH-HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHcc
Confidence            444443 4468899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (385)
                      +.+++++|||+++.++|.++..|+.++...+...|-++|+||.|+..++.  ..+...|+...++.+|++|++.+.+++.
T Consensus        80 gthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~  159 (198)
T KOG0079|consen   80 GTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEA  159 (198)
T ss_pred             CCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchH
Confidence            99999999999999999999999999999888999999999999987765  4567788999999999999999999999


Q ss_pred             HHHHHHHHHhc
Q psy125          159 PFLWLARKLIG  169 (385)
Q Consensus       159 l~~~i~~~l~~  169 (385)
                      .|.-|.+....
T Consensus       160 mF~cit~qvl~  170 (198)
T KOG0079|consen  160 MFHCITKQVLQ  170 (198)
T ss_pred             HHHHHHHHHHH
Confidence            99999887643

>KOG0087|consensus

Probab=99.95  E-value=6.5e-28  Score=194.50  Aligned_cols=120  Identities=30%  Similarity=0.543  Sum_probs=115.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+|++++|+++||||-|+.||..++|.-...+|+|+++.+..+.++++.++.+|||||||+||+.+.+.||++|.|+++
T Consensus        13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAll   92 (222)
T KOG0087|consen   13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   92 (222)
T ss_pred             eEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||+|.+.||++                                                |+||||..+.||+++|..++
T Consensus        93 VYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~l  172 (222)
T KOG0087|consen   93 VYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERVL  172 (222)
T ss_pred             EEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHHH
Confidence            999999999999                                                99999999999999999999


Q ss_pred             HHHhcCCC
Q psy125          335 RKLIGDPN  342 (385)
Q Consensus       335 ~~i~~~~~  342 (385)
                      ..|+..-+
T Consensus       173 ~~I~~~vs  180 (222)
T KOG0087|consen  173 TEIYKIVS  180 (222)
T ss_pred             HHHHHHHH
Confidence            99987543

>cd04120 Rab12 Rab12 subfamily

Probab=99.95  E-value=2.9e-26  Score=194.36  Aligned_cols=161  Identities=26%  Similarity=0.598  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +.|+++|..|||||||+++++.+.+...+.++.|..+.......++..+.+.+|||+|++.++.++..+++++|++|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            47999999999999999999999998888899998887777777888899999999999999999999999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHh-cCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRK-KNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      |++++.+|+++..|+..+... ..+.|+++|+||+|+...+.  ..+...++.. .+..++++||++|.|++++|.++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            999999999999999877654 35789999999999864332  2334445544 3678999999999999999999999


Q ss_pred             HHhcC
Q psy125          166 KLIGD  170 (385)
Q Consensus       166 ~l~~~  170 (385)
                      .+...
T Consensus       161 ~~~~~  165 (202)
T cd04120         161 DILKK  165 (202)
T ss_pred             HHHHh
Confidence            87654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0091|consensus

Probab=99.95  E-value=1.6e-28  Score=188.72  Aligned_cols=119  Identities=27%  Similarity=0.573  Sum_probs=112.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEe-CCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      .++++++|++.||||+|+..|..+.|.+..+||+|+++....+.+ ++..+++++|||+||++|+++...||++.-|+++
T Consensus         8 qfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvll   87 (213)
T KOG0091|consen    8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVLL   87 (213)
T ss_pred             EEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceEE
Confidence            489999999999999999999999999999999999999888876 4678899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHH
Q psy125          303 MFDVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       303 v~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |||+|++.||+.                                                  |+|||||+|.||+|+|..
T Consensus        88 vyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~m  167 (213)
T KOG0091|consen   88 VYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFDM  167 (213)
T ss_pred             EEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHHH
Confidence            999999999998                                                  999999999999999999


Q ss_pred             HHHHHhcCCC
Q psy125          333 LARKLIGDPN  342 (385)
Q Consensus       333 l~~~i~~~~~  342 (385)
                      |+++|...-+
T Consensus       168 laqeIf~~i~  177 (213)
T KOG0091|consen  168 LAQEIFQAIQ  177 (213)
T ss_pred             HHHHHHHHHh
Confidence            9999987543

>KOG0088|consensus

Probab=99.95  E-value=3.6e-28  Score=185.69  Aligned_cols=132  Identities=31%  Similarity=0.503  Sum_probs=120.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..||++++|..-||||+|.-||+.+.|.....+|+...|..+.+.+.+....+.||||+||++|..+-+.||++.+|+||
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL   91 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL   91 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||+||+.||+.                                                |+|||||.+.||.|+|..|.
T Consensus        92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt  171 (218)
T KOG0088|consen   92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT  171 (218)
T ss_pred             EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence            999999999998                                                99999999999999999999


Q ss_pred             HHHhcCCCccc-ccCCCCCCC
Q psy125          335 RKLIGDPNLEF-VAMPALLPP  354 (385)
Q Consensus       335 ~~i~~~~~~~~-~~~~~~~~~  354 (385)
                      +.+++..+..+ .+.|...+|
T Consensus       172 ~~MiE~~s~~qr~~~~~s~qp  192 (218)
T KOG0088|consen  172 AKMIEHSSQRQRTRSPLSTQP  192 (218)
T ss_pred             HHHHHHhhhcccccCCcCCCC
Confidence            99998765433 333333333

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.95  E-value=6.3e-26  Score=189.59  Aligned_cols=160  Identities=23%  Similarity=0.401  Sum_probs=139.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+++|.+|||||||+++++.+.+...+.|+.+..+. .....+...+.+.+|||+|++.+..++..+++++|++|+
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            4689999999999999999999999998888899886654 456678888999999999999998888999999999999


Q ss_pred             EEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcch--------------hhhHHHHHHHHhcCC-eEEEEcCC
Q psy125           88 MFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR--------------KVKAKSIVFHRKKNL-QYYDISAK  151 (385)
Q Consensus        88 V~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~Sa~  151 (385)
                      |||++++.+|+++ ..|+..+....++.|+++|+||+|+...              ....+..+++...+. .++++||+
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk  162 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  162 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence            9999999999997 7899988877778999999999998541              124566778888885 89999999


Q ss_pred             CCCC-hHHHHHHHHHHHh
Q psy125          152 SNYN-FEKPFLWLARKLI  168 (385)
Q Consensus       152 ~~~g-i~~l~~~i~~~l~  168 (385)
                      ++.| ++++|..++++..
T Consensus       163 ~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         163 QSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            9998 9999999988654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01875 RhoG RhoG subfamily

Probab=99.95  E-value=7.6e-26  Score=191.43  Aligned_cols=162  Identities=31%  Similarity=0.558  Sum_probs=137.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      |..+||+++|..|||||||+++++.+.+...+.++.|..+.. ....+...+.+.+|||+|++.++.++..+++++|++|
T Consensus         1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i   79 (191)
T cd01875           1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA-QTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI   79 (191)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEE-EEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence            356899999999999999999999999988888998866543 3456778899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcC-CeEEEEcC
Q psy125           87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKN-LQYYDISA  150 (385)
Q Consensus        87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~Sa  150 (385)
                      +|||++++.+|+++. .|+..+.....+.|+++|+||.|+.+...              ..+...++...+ ..++++||
T Consensus        80 lvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          80 ICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            999999999999986 58877766667899999999999864321              224455666666 58999999


Q ss_pred             CCCCChHHHHHHHHHHHhc
Q psy125          151 KSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~  169 (385)
                      +++.|++++|..+++.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998754

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.94  E-value=1.4e-25  Score=191.66  Aligned_cols=163  Identities=35%  Similarity=0.631  Sum_probs=139.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      +||+++|++|||||||+++|+.+.+...+.++.|.++....+..+ +..+.+.+|||+|++.+..++..++++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888888999887776666666 6789999999999999988899999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh-----cCCCCEEEEEeCCCCcc--hhhhHHHHHHHHhcC-CeEEEEcCCCCCChHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV-----CENIPIVLCGNKVDIKD--RKVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~-----~~~~~~ilv~nK~Dl~~--~~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~  160 (385)
                      ||++++.+++.+..|+..+...     ..+.|+++|+||+|+..  .....+...+....+ ..++++||+++.|+++++
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            9999999999998888777542     25789999999999963  223445566777666 589999999999999999


Q ss_pred             HHHHHHHhcCCC
Q psy125          161 LWLARKLIGDPN  172 (385)
Q Consensus       161 ~~i~~~l~~~~~  172 (385)
                      .+|++.+.....
T Consensus       161 ~~l~~~l~~~~~  172 (201)
T cd04107         161 RFLVKNILANDK  172 (201)
T ss_pred             HHHHHHHHHhch
Confidence            999998876533

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0087|consensus

Probab=99.94  E-value=3.4e-26  Score=184.62  Aligned_cols=163  Identities=31%  Similarity=0.548  Sum_probs=150.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ...+||+++|++|||||-|+.+|..+.|.....+|+|+++......++++.++..||||.|+++|+.+...|++++.+++
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGAl   91 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGAL   91 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccceeE
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|||++.+.+|+++.+|+.+++.+. .++++++|+||+||...+.  .++...++...+..++++||....++++.|..+
T Consensus        92 lVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~~~  171 (222)
T KOG0087|consen   92 LVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFERV  171 (222)
T ss_pred             EEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHHHH
Confidence            9999999999999999999999865 7899999999999977443  566778899999999999999999999999888


Q ss_pred             HHHHhc
Q psy125          164 ARKLIG  169 (385)
Q Consensus       164 ~~~l~~  169 (385)
                      ...+..
T Consensus       172 l~~I~~  177 (222)
T KOG0087|consen  172 LTEIYK  177 (222)
T ss_pred             HHHHHH
Confidence            877654

>cd04120 Rab12 Rab12 subfamily

Probab=99.94  E-value=9.7e-27  Score=197.23  Aligned_cols=117  Identities=28%  Similarity=0.610  Sum_probs=110.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +.|+++|..|||||+++.+|..+.|...+.+|+|.++..+.+.+++..+.+.||||+|+++|+.++..||+++||+|+||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36999999999999999999999999999999999998888889988999999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          305 DVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |++++.||++                                                 |+|||||+|.||+++|.++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999988                                                 789999999999999999999


Q ss_pred             HHhcCC
Q psy125          336 KLIGDP  341 (385)
Q Consensus       336 ~i~~~~  341 (385)
                      .+....
T Consensus       161 ~~~~~~  166 (202)
T cd04120         161 DILKKM  166 (202)
T ss_pred             HHHHhC
Confidence            987754

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.94  E-value=4.8e-26  Score=196.38  Aligned_cols=163  Identities=76%  Similarity=1.233  Sum_probs=146.9

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.|...+.+|+|.++....+..++..+.+.||||+|+++|..++..||++++++|
T Consensus        11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   90 (219)
T PLN03071         11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (219)
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence            45689999999999999999999999999999999999998888878888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh---------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          302 IMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       302 lv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      +|||++++.||++                                             |+|||||+|.||+++|.+|+++
T Consensus        91 lvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~  170 (219)
T PLN03071         91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (219)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence            9999999999986                                             7999999999999999999999


Q ss_pred             HhcCCCcccccCCCCCCCccccChhhhhHHHHHHHHhhccCCCCCCCC
Q psy125          337 LIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDED  384 (385)
Q Consensus       337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (385)
                      +.......+...+.+.++....+....+..++...+++....++++..
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (219)
T PLN03071        171 LAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDDDDD  218 (219)
T ss_pred             HHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            998887777888888888877777777777777778877777776654

>cd04131 Rnd Rnd subfamily

Probab=99.94  E-value=1.4e-25  Score=187.27  Aligned_cols=159  Identities=22%  Similarity=0.398  Sum_probs=136.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|++|||||||+++++.+.+...+.++.+..+. .....+...+.+.+|||+|++.+..+...+++++|++|+|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            379999999999999999999999998888888886654 4566778889999999999999888888999999999999


Q ss_pred             EeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcch--------------hhhHHHHHHHHhcCC-eEEEEcCCC
Q psy125           89 FDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR--------------KVKAKSIVFHRKKNL-QYYDISAKS  152 (385)
Q Consensus        89 ~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~Sa~~  152 (385)
                      ||++++.+|+.+ ..|+..+....++.|+++|+||+|+...              ....+..+++...+. .++++||++
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            999999999985 7899988877778999999999998531              123456678887786 899999999


Q ss_pred             CCC-hHHHHHHHHHHHh
Q psy125          153 NYN-FEKPFLWLARKLI  168 (385)
Q Consensus       153 ~~g-i~~l~~~i~~~l~  168 (385)
                      +.+ ++++|..++++.+
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            995 9999999998643

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0086|consensus

Probab=99.94  E-value=1.7e-26  Score=175.47  Aligned_cols=167  Identities=29%  Similarity=0.569  Sum_probs=150.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ..-+|++++|+.|.|||+|+.+|+.+.+....+.++|+++....+.+..+.+++.+|||.|+++++...+.|++++.+++
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl   86 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL   86 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|||++++.+|..+..|+...+.. .+++-+++++||.|+.+.+.  ..+...++......+.++|+.+|+++++.|...
T Consensus        87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c  166 (214)
T KOG0086|consen   87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC  166 (214)
T ss_pred             EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHH
Confidence            999999999999999999988763 35777889999999987655  345566788888899999999999999999999


Q ss_pred             HHHHhcCCCc
Q psy125          164 ARKLIGDPNL  173 (385)
Q Consensus       164 ~~~l~~~~~~  173 (385)
                      ++.++.+-+.
T Consensus       167 ~~tIl~kIE~  176 (214)
T KOG0086|consen  167 ARTILNKIES  176 (214)
T ss_pred             HHHHHHHHhh
Confidence            9988765333

>cd04122 Rab14 Rab14 subfamily

Probab=99.94  E-value=2.6e-25  Score=184.29  Aligned_cols=160  Identities=31%  Similarity=0.571  Sum_probs=138.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|++|||||||+++++.+.+...+.++.+.+........+...+.+.+|||||++.+...+..+++++|++|+|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            47999999999999999999999988888888888887777777788889999999999998888888999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||++++.+++.+..|+..+... ..+.|+++|+||+|+.....  ..+...++...+.+++++||+++.|+++++..+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            9999999999999998877653 35688999999999865432  34555667777789999999999999999999998


Q ss_pred             HHh
Q psy125          166 KLI  168 (385)
Q Consensus       166 ~l~  168 (385)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd04122         162 KIY  164 (166)
T ss_pred             HHh
Confidence            764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>KOG0095|consensus

Probab=99.94  E-value=6e-27  Score=177.20  Aligned_cols=116  Identities=38%  Similarity=0.639  Sum_probs=111.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|..|||||+|..+|..+-|+.....|+|+++..+.+.+++.+++++||||+||++|+++...||+.||++|||
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++...||+-                                                |+|||||...||+.+|..++.
T Consensus        87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~  166 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC  166 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence            99999999976                                                899999999999999999887


Q ss_pred             HHhc
Q psy125          336 KLIG  339 (385)
Q Consensus       336 ~i~~  339 (385)
                      .+..
T Consensus       167 rli~  170 (213)
T KOG0095|consen  167 RLIS  170 (213)
T ss_pred             HHHH
Confidence            6654

>cd04124 RabL2 RabL2 subfamily

Probab=99.94  E-value=5e-25  Score=181.49  Aligned_cols=159  Identities=31%  Similarity=0.542  Sum_probs=136.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|.+|||||||+++++.+.+.+...++.+.+........+...+.+.+|||+|++.+..++..++.++|++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888887788777776666677788899999999999999999999999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125           90 DVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      |++++.+++.+..|+..+.....+.|+++++||+|+.... ..+...+....+.+++++||+++.|+++++..+++.+..
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  159 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-TQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-HHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999998888998887766789999999999985432 233444555567789999999999999999999987643

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04128 Spg1 Spg1p

Probab=99.94  E-value=4.1e-25  Score=185.14  Aligned_cols=160  Identities=25%  Similarity=0.428  Sum_probs=136.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|..|||||||+++++.+.+...+.++.|.+........++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998889999998887777777888899999999999998888888999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcch----h---hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR----K---VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~----~---~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      |++++.+++++..|+..+.+... ..| ++|+||+|+...    .   ...+...++...+.+++++||+++.|++++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999988876433 345 688999998421    1   12334456666778999999999999999999


Q ss_pred             HHHHHHhcC
Q psy125          162 WLARKLIGD  170 (385)
Q Consensus       162 ~i~~~l~~~  170 (385)
                      ++++.+..-
T Consensus       160 ~l~~~l~~~  168 (182)
T cd04128         160 IVLAKAFDL  168 (182)
T ss_pred             HHHHHHHhc
Confidence            999988653

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>KOG0096|consensus

Probab=99.94  E-value=3.8e-26  Score=180.45  Aligned_cols=206  Identities=84%  Similarity=1.306  Sum_probs=191.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ...++++++|+.|.||||++++.+.+.+...+.++.|+.........+.+.+++..|||.|++.+..+...++-+..+++
T Consensus         8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAi   87 (216)
T KOG0096|consen    8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAI   87 (216)
T ss_pred             cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeE
Confidence            47899999999999999999999999999999999999999998888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      +.||+.......++.+|...+.+.++++|+++++||.|...+....+...+.+...+.++++|++++.+.+.-|.++++.
T Consensus        88 imFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarK  167 (216)
T KOG0096|consen   88 IMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARK  167 (216)
T ss_pred             EEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHhhh
Confidence            99999999999999999999999899999999999999877665555556777788899999999999999999999999


Q ss_pred             HhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCc
Q psy125          167 LIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDD  212 (385)
Q Consensus       167 l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~  212 (385)
                      +.++|.+.++..|.+.+|+...|.....+....+.+.....++.+.
T Consensus       168 l~G~p~Lefva~paLaPpev~~d~~~~~q~e~dl~~a~t~~lp~ed  213 (216)
T KOG0096|consen  168 LTGDPSLEFVAMPALAPPEVIMDYWLQRQHEHDLAEAQTTALPDED  213 (216)
T ss_pred             hcCCCCeEEEeccccCCCeeeccchhhHHHHHHHHHHhccCCCccc
Confidence            9999999999999999999999999999999888888877777654

>KOG0093|consensus

Probab=99.94  E-value=1.6e-26  Score=174.45  Aligned_cols=120  Identities=28%  Similarity=0.559  Sum_probs=113.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+|+.++|.+.||||+++.+++.+.|...+-+|.|.++..+.+--..+.++++||||+||++|+.+...|||++.|+|||
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm  100 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM  100 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence            47999999999999999999999999999999999999999887777889999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||+|+.+||+.                                                |+|+|||.|.||+++|..++.
T Consensus       101 yDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~  180 (193)
T KOG0093|consen  101 YDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD  180 (193)
T ss_pred             EecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence            99999999988                                                999999999999999999999


Q ss_pred             HHhcCCCc
Q psy125          336 KLIGDPNL  343 (385)
Q Consensus       336 ~i~~~~~~  343 (385)
                      .|-.+.+.
T Consensus       181 ~Ic~kmse  188 (193)
T KOG0093|consen  181 IICDKMSE  188 (193)
T ss_pred             HHHHHhhh
Confidence            98776554

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.94  E-value=3.5e-25  Score=190.79  Aligned_cols=161  Identities=20%  Similarity=0.366  Sum_probs=139.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+++|+.|||||||+++|+.+.+...+.++.+..+.. ....+...+.+.+|||+|++.+..+...+++++|++|+
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~-~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTA-GLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEE-EEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            46899999999999999999999999998899998876643 46677889999999999999998888899999999999


Q ss_pred             EEeCCChhhhhc-HHHHHHHHHHhcCCCCEEEEEeCCCCcch--------------hhhHHHHHHHHhcCC-eEEEEcCC
Q psy125           88 MFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIKDR--------------KVKAKSIVFHRKKNL-QYYDISAK  151 (385)
Q Consensus        88 V~d~~~~~~~~~-~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~Sa~  151 (385)
                      |||++++.+|+. +..|+..+....++.|+++|+||+|+...              ....+...++...+. .++++||+
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAk  170 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAF  170 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCC
Confidence            999999999987 47899988876678899999999998531              124466778888887 69999999


Q ss_pred             CCC-ChHHHHHHHHHHHhc
Q psy125          152 SNY-NFEKPFLWLARKLIG  169 (385)
Q Consensus       152 ~~~-gi~~l~~~i~~~l~~  169 (385)
                      ++. |++++|..++..+..
T Consensus       171 tg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         171 TSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             cCCcCHHHHHHHHHHHHHH
Confidence            997 899999999998754

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01865 Rab3 Rab3 subfamily

Probab=99.94  E-value=6.6e-25  Score=181.59  Aligned_cols=159  Identities=27%  Similarity=0.591  Sum_probs=136.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||++++..+.+...+.++.|.++...........+.+.+|||+|.+.+...+..+++++|++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999998888888888887776666666777899999999999988888889999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      |++++.+++.+..|+..+.... .+.|+++++||+|+.+.+.  ......+....+.+++++||+++.|+.+++..++..
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999999999998887643 4789999999999865432  234445566667789999999999999999999887


Q ss_pred             Hh
Q psy125          167 LI  168 (385)
Q Consensus       167 l~  168 (385)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            64

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.94  E-value=8e-25  Score=181.49  Aligned_cols=162  Identities=29%  Similarity=0.617  Sum_probs=139.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+++|++|||||||++++.++.+...+.++.+.++...........+.+.+|||+|++.+......++.++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            45899999999999999999999999988889999988777777777788999999999999888888889999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |||++++.++..+..|+..+.... .+.|+++++||.|+.....  ..+...+......+++++||+++.|+.+++..++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999989998887643 4689999999999975332  3344556666778999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       162 ~~~~~  166 (167)
T cd01867         162 KDIKK  166 (167)
T ss_pred             HHHHh
Confidence            98753

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04117 Rab15 Rab15 subfamily

Probab=99.94  E-value=6.8e-25  Score=180.64  Aligned_cols=157  Identities=27%  Similarity=0.569  Sum_probs=135.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++.+.+.+.+.++.|.+............+.+.+||++|++.+...+..++.++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888888888777666777777899999999999988888888999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      |++++.+++.+..|+..+.... .+.|+++|+||.|+...+.  ..+...+.+..+.+++++||+++.|++++|.+|++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            9999999999999998877644 3689999999999865432  345555666677899999999999999999999875

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>PTZ00369 Ras-like protein; Provisional

Probab=99.93  E-value=9.4e-25  Score=184.65  Aligned_cols=164  Identities=25%  Similarity=0.504  Sum_probs=136.9

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      |.++.+||+++|.+|||||||+++++.+.+...+.++.+.++ ......+...+.+.+|||+|++.+..++..++.++++
T Consensus         1 ~~~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~   79 (189)
T PTZ00369          1 MASTEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQG   79 (189)
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCE
Confidence            446789999999999999999999999888878888887665 3445667788999999999999999999999999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      +++|||++++.+++.+..|+..+....  .+.|+++++||+|+.....  ..+...+....+.+++++||+++.|+++++
T Consensus        80 iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~  159 (189)
T PTZ00369         80 FLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAF  159 (189)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHH
Confidence            999999999999999888888876632  4789999999999854322  223444555556789999999999999999


Q ss_pred             HHHHHHHhc
Q psy125          161 LWLARKLIG  169 (385)
Q Consensus       161 ~~i~~~l~~  169 (385)
                      .+|++.+..
T Consensus       160 ~~l~~~l~~  168 (189)
T PTZ00369        160 YELVREIRK  168 (189)
T ss_pred             HHHHHHHHH
Confidence            999987754

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.93  E-value=8e-25  Score=182.02  Aligned_cols=160  Identities=27%  Similarity=0.473  Sum_probs=135.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|.+|||||||+++++++.+...+.++.+..+. .....++..+.+.+|||+|++.+..++..++..+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYK-QQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEE-EEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            479999999999999999999999888888888875443 3355677788999999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      ||++++.+|+.+..|+..+.+.  ..+.|+++|+||+|+...+.  ..+...++...+.+++++||+++.|++++|.+|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999988887776653  25789999999999865332  3345556666788999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       161 ~~~~~  165 (172)
T cd04141         161 REIRR  165 (172)
T ss_pred             HHHHH
Confidence            87754

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.93  E-value=1.5e-24  Score=179.73  Aligned_cols=160  Identities=32%  Similarity=0.643  Sum_probs=137.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|++|||||||+++++.+.+...+.++.+.+.........+..+.+.+||+||++.+...+..+++++|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            47999999999999999999998888877788888777766677777788999999999998888888999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||++++.++..+..|+..+.... .+.|+++++||+|+.....  ..+...+....+.+++++|++++.|+.+++..|++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999998887644 5689999999999865432  24455566667789999999999999999999998


Q ss_pred             HHh
Q psy125          166 KLI  168 (385)
Q Consensus       166 ~l~  168 (385)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04110 Rab35 Rab35 subfamily

Probab=99.93  E-value=1.3e-24  Score=185.15  Aligned_cols=163  Identities=30%  Similarity=0.591  Sum_probs=140.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+++|++|||||||+++++++.+...+.++.+...........+..+.+.+||+||++.+..++..++.+++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            46899999999999999999999988887888888877766666667778899999999999888888999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      |||++++.+++.+..|+..+.......|+++|+||+|+.....  ..+...+....+..++++|++++.|+++++.+|++
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~  164 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE  164 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence            9999999999999999998877667899999999999865432  23445566666789999999999999999999999


Q ss_pred             HHhcC
Q psy125          166 KLIGD  170 (385)
Q Consensus       166 ~l~~~  170 (385)
                      .+...
T Consensus       165 ~~~~~  169 (199)
T cd04110         165 LVLRA  169 (199)
T ss_pred             HHHHh
Confidence            87653

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>KOG0097|consensus

Probab=99.93  E-value=2.6e-26  Score=172.23  Aligned_cols=123  Identities=31%  Similarity=0.570  Sum_probs=117.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+|.+++|+-|||||+++.+|....|......|+|+++.+..+.+.+.+++++||||+||++|+.+...||+++-|+++|
T Consensus        11 ifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalmv   90 (215)
T KOG0097|consen   11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   90 (215)
T ss_pred             eEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++.|.+++.                                                |+|+|||+|.||+++|...++
T Consensus        91 yditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~ak  170 (215)
T KOG0097|consen   91 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETAK  170 (215)
T ss_pred             EEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHHH
Confidence            99999999987                                                999999999999999999999


Q ss_pred             HHhcCCCcccc
Q psy125          336 KLIGDPNLEFV  346 (385)
Q Consensus       336 ~i~~~~~~~~~  346 (385)
                      +|.++-+....
T Consensus       171 kiyqniqdgsl  181 (215)
T KOG0097|consen  171 KIYQNIQDGSL  181 (215)
T ss_pred             HHHHhhhcCcc
Confidence            99987765443

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.93  E-value=1.3e-24  Score=180.34  Aligned_cols=159  Identities=25%  Similarity=0.554  Sum_probs=137.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++++.+...+.++.+.++........+..+.+.+|||+|.+.+..++..++.++|++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888999998887777777788899999999999888888888999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc------CCCCEEEEEeCCCCcchh--hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC------ENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~------~~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      |++++.+++.+..|+..+....      .+.|+++|+||+|+....  ...+...+....+.+++++||+++.|+++++.
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            9999999998888988887643      368999999999986322  23344456666678999999999999999999


Q ss_pred             HHHHHHh
Q psy125          162 WLARKLI  168 (385)
Q Consensus       162 ~i~~~l~  168 (385)
                      .|++.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.93  E-value=1.5e-24  Score=180.80  Aligned_cols=157  Identities=27%  Similarity=0.456  Sum_probs=130.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|.+|||||||+++++.+.+...+.|+.+..+.. ........+.+.+|||+|++.+...+..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAV-TVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            799999999999999999999999888888888866643 3455677899999999999999888888999999999999


Q ss_pred             eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcC-CeEEEEcCCCC
Q psy125           90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKN-LQYYDISAKSN  153 (385)
Q Consensus        90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~Sa~~~  153 (385)
                      |++++.+++++. .|+..+....++.|+++|+||+|+.....              ..+...++...+ ..++++||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            999999999886 58887776657899999999999854311              123334555555 68999999999


Q ss_pred             CChHHHHHHHHHHH
Q psy125          154 YNFEKPFLWLARKL  167 (385)
Q Consensus       154 ~gi~~l~~~i~~~l  167 (385)
                      .|++++|..++++.
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998854

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04127 Rab27A Rab27a subfamily

Probab=99.93  E-value=1.3e-24  Score=182.63  Aligned_cols=162  Identities=31%  Similarity=0.594  Sum_probs=136.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC----------CeeEEEEEEeCCCccccccchhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN----------RGAIRFNVWDTAGQEKFGGLRDG   77 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~----------~~~~~~~i~Dt~g~~~~~~~~~~   77 (385)
                      +.+||+++|++|||||||++++..+.+...+.++.+.+.........          ...+.+.+|||+|++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            45899999999999999999999999988888888877655444332          35689999999999988888899


Q ss_pred             hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCC
Q psy125           78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSN  153 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~  153 (385)
                      +++++|++++|||++++.++..+..|+..+...  ..+.|+++|+||+|+...+.  ..+...+....+.+++++||+++
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            999999999999999999999999999887663  25789999999999865322  34456677777789999999999


Q ss_pred             CChHHHHHHHHHHHhc
Q psy125          154 YNFEKPFLWLARKLIG  169 (385)
Q Consensus       154 ~gi~~l~~~i~~~l~~  169 (385)
                      .|+++++..|++.+.+
T Consensus       163 ~~v~~l~~~l~~~~~~  178 (180)
T cd04127         163 TNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999987653

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.93  E-value=1.4e-24  Score=179.06  Aligned_cols=157  Identities=31%  Similarity=0.653  Sum_probs=134.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC--CeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN--RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~--~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +||+++|++|+|||||++++..+.+...+.++.+.++........  ...+.+.+|||||++.+...+..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999988888888888877765555555  668899999999999888888899999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      |||++++.+++.+..|+..+.....+.|+++|+||.|+.....  ..+...++...+.+++++|++++.|+++++..|+.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            9999999999999899988877667899999999999865332  34455667777789999999999999999998875


Q ss_pred             H
Q psy125          166 K  166 (385)
Q Consensus       166 ~  166 (385)
                      .
T Consensus       161 ~  161 (162)
T cd04106         161 K  161 (162)
T ss_pred             h
Confidence            4

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.93  E-value=2.4e-24  Score=178.74  Aligned_cols=159  Identities=29%  Similarity=0.498  Sum_probs=135.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      ||+++|++|||||||+++++.+.+...+.++.+.+.........+..+.+.+|||+|++++..++..+++++|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988999999988776767777778999999999999998889999999999999999


Q ss_pred             CCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh----hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           91 VTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      ++++.++..+..|+..+.+..  .+.|+++|+||.|+.....    ......+......+++++||+++.|++++|..|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999889998876532  2467899999999854322    2233445555567899999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            88754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04136 Rap_like Rap-like subfamily

Probab=99.93  E-value=2e-24  Score=178.38  Aligned_cols=158  Identities=30%  Similarity=0.578  Sum_probs=129.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|++|||||||+++++.+.+...+.++.+.. .......+...+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-YRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhh-EEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            3799999999999999999999988877777776633 334456677788999999999999998889999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      ||++++.+++.+..|+..+...  ..+.|+++++||+|+...+.  ..+...+....+.+++++||+++.|+.+++.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999888888877653  24789999999999865322  2233445555567899999999999999999998


Q ss_pred             HHH
Q psy125          165 RKL  167 (385)
Q Consensus       165 ~~l  167 (385)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=99.93  E-value=2.4e-24  Score=178.06  Aligned_cols=158  Identities=28%  Similarity=0.551  Sum_probs=132.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      ++||+++|.+|||||||+++++.+.+...+.++.+.+.. .........+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            479999999999999999999988887777777775543 3455667788999999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      ||+++..+++.+..|+..+...  ..+.|+++++||+|+.....  ......+....+.+++++||+++.|+++++.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999888888877653  36789999999999965432  2233445556668999999999999999999998


Q ss_pred             HHH
Q psy125          165 RKL  167 (385)
Q Consensus       165 ~~l  167 (385)
                      +.+
T Consensus       160 ~~l  162 (164)
T cd04175         160 RQI  162 (164)
T ss_pred             HHh
Confidence            765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.93  E-value=2.3e-24  Score=184.84  Aligned_cols=161  Identities=24%  Similarity=0.451  Sum_probs=136.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+|||.+|||||||+++|..+.+...+.|+.+..+. ....++...+.+.+|||+|++.+..++..+++++|++|+|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            379999999999999999999999998889999887664 4556788889999999999999988889999999999999


Q ss_pred             EeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcch--------------hhhHHHHHHHHhcCC-eEEEEcCCC
Q psy125           89 FDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR--------------KVKAKSIVFHRKKNL-QYYDISAKS  152 (385)
Q Consensus        89 ~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~Sa~~  152 (385)
                      ||++++.+|+.+. .|...+....++.|+++|+||+|+...              ....+...++...+. .++++||++
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            9999999999874 677776666678999999999998642              112345667777774 899999999


Q ss_pred             CC-ChHHHHHHHHHHHhcC
Q psy125          153 NY-NFEKPFLWLARKLIGD  170 (385)
Q Consensus       153 ~~-gi~~l~~~i~~~l~~~  170 (385)
                      +. |+.++|..++++.+..
T Consensus       160 ~~~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         160 SERSVRDVFHVATVASLGR  178 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhc
Confidence            88 4999999999987554

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01866 Rab2 Rab2 subfamily

Probab=99.93  E-value=4e-24  Score=177.42  Aligned_cols=161  Identities=29%  Similarity=0.559  Sum_probs=139.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+++|++|||||||+++++.+.+...+.++.|.++........+..+.+.+||++|.+.+......+++++|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999999988888888888888887888888888999999999999888888889999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |+|++++.+++.+..|+..+... ..+.|+++++||.|+.....  ..+...+....+..++++|++++.|+.+++..++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~  162 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA  162 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999888763 35789999999999864322  3344556666778999999999999999999998


Q ss_pred             HHHh
Q psy125          165 RKLI  168 (385)
Q Consensus       165 ~~l~  168 (385)
                      +.+.
T Consensus       163 ~~~~  166 (168)
T cd01866         163 KEIY  166 (168)
T ss_pred             HHHH
Confidence            8764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04121 Rab40 Rab40 subfamily

Probab=99.93  E-value=3.1e-25  Score=186.28  Aligned_cols=120  Identities=25%  Similarity=0.492  Sum_probs=112.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|..+||||+++.+|..+.|...+.+++|.++....+.+++..+.+.+|||+|+++|..++..|++++|++||
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            35899999999999999999999999998898999998888888888889999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          303 MFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       303 v~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |||++++.||++                                               |+||||++|.||+++|.+|++
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~  164 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR  164 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            999999999999                                               999999999999999999999


Q ss_pred             HHhcCCC
Q psy125          336 KLIGDPN  342 (385)
Q Consensus       336 ~i~~~~~  342 (385)
                      .+.....
T Consensus       165 ~i~~~~~  171 (189)
T cd04121         165 IVLMRHG  171 (189)
T ss_pred             HHHHhcC
Confidence            8876443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.93  E-value=5.9e-25  Score=186.01  Aligned_cols=126  Identities=97%  Similarity=1.570  Sum_probs=115.7

Q ss_pred             ECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125          230 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       230 ~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~  309 (385)
                      +|.+|||||+++.+|+.+.|...+.+|+|.++..+.+.+++..+.+.||||+|+++|..+++.||++++++|+|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            59999999999999999999999999999999988888888899999999999999999999999999999999999999


Q ss_pred             hhhhh---------------------------------------------hheeccccCCCchHHHHHHHHHHhcCCCcc
Q psy125          310 ITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLARKLIGDPNLE  344 (385)
Q Consensus       310 ~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~~~~~~  344 (385)
                      .||++                                             |+||||++|.||+++|.+|++++.......
T Consensus        81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~  160 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE  160 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcccce
Confidence            99986                                             999999999999999999999998876666


Q ss_pred             cccCCCCCCCc
Q psy125          345 FVAMPALLPPE  355 (385)
Q Consensus       345 ~~~~~~~~~~~  355 (385)
                      +...+...++.
T Consensus       161 ~~~~~~~~~~~  171 (200)
T smart00176      161 FVAMPALAPPE  171 (200)
T ss_pred             eccCcccCCcc
Confidence            66666666654

Ran is involved in the active transport of proteins through nuclear pores.

>cd04134 Rho3 Rho3 subfamily

Probab=99.93  E-value=3.7e-24  Score=180.91  Aligned_cols=158  Identities=28%  Similarity=0.477  Sum_probs=131.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      ||+++|++|||||||+++|+.+.+...+.++.+..+.. ....+...+.+.+|||+|++.+..++..++.++|++++|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            89999999999999999999998888788887766542 34456677999999999999988888889999999999999


Q ss_pred             CCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcC-CeEEEEcCCCCC
Q psy125           91 VTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKN-LQYYDISAKSNY  154 (385)
Q Consensus        91 ~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~Sa~~~~  154 (385)
                      ++++.+|+.+. .|+..+.....+.|+++|+||+|+.....              ..+...++...+ ..++++||+++.
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  160 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR  160 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence            99999998876 58888877667899999999999865432              122334444444 589999999999


Q ss_pred             ChHHHHHHHHHHHhc
Q psy125          155 NFEKPFLWLARKLIG  169 (385)
Q Consensus       155 gi~~l~~~i~~~l~~  169 (385)
                      |++++|.++++.+..
T Consensus       161 ~v~e~f~~l~~~~~~  175 (189)
T cd04134         161 GVNEAFTEAARVALN  175 (189)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999998764

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01868 Rab11_like Rab11-like

Probab=99.93  E-value=4.2e-24  Score=176.81  Aligned_cols=159  Identities=32%  Similarity=0.604  Sum_probs=136.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|++|||||||+++++++.+...+.++.+.+............+.+.+||+||++.+..+...++.+++++++|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            47999999999999999999999888888888988887777777777778999999999998888888899999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||++++.++..+..|+..+..... +.|+++|+||+|+...+.  ..+...+....+..++++||+++.|+++++..++.
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  162 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT  162 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999988877544 589999999999865332  33445566666778999999999999999999887


Q ss_pred             HH
Q psy125          166 KL  167 (385)
Q Consensus       166 ~l  167 (385)
                      .+
T Consensus       163 ~i  164 (165)
T cd01868         163 EI  164 (165)
T ss_pred             Hh
Confidence            64

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.93  E-value=4.5e-24  Score=176.00  Aligned_cols=158  Identities=27%  Similarity=0.530  Sum_probs=130.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|++|||||||+++++++.+...+.++.+... ......+...+.+.+|||+|++.+..++..++.+++++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            37999999999999999999999888777777777554 33455666778899999999999988899999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||+++..+++.+..|+..+.+.  ..+.|+++++||+|+..... ..+...+....+.+++++||+++.|+++++.++++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            9999999998888888777664  24789999999999865332 33444555666779999999999999999999987


Q ss_pred             HH
Q psy125          166 KL  167 (385)
Q Consensus       166 ~l  167 (385)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.93  E-value=4.1e-24  Score=178.05  Aligned_cols=156  Identities=29%  Similarity=0.536  Sum_probs=129.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|.+|||||||+.+++.+.+...+.++.+.... .....+...+.+.+|||+|++.+..++..++.++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            79999999999999999999999988888888765443 34456778899999999999998888888999999999999


Q ss_pred             eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcC-CeEEEEcCCCC
Q psy125           90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKN-LQYYDISAKSN  153 (385)
Q Consensus        90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~Sa~~~  153 (385)
                      |++++.+|+++. .|+..+.....+.|+++|+||+|+....              ...+...++...+ ..++++||+++
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            999999999885 5887776666789999999999985421              1233445665555 48999999999


Q ss_pred             CChHHHHHHHHHH
Q psy125          154 YNFEKPFLWLARK  166 (385)
Q Consensus       154 ~gi~~l~~~i~~~  166 (385)
                      .|++++|..+++.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999998864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04176 Rap2 Rap2 subgroup

Probab=99.93  E-value=4.7e-24  Score=176.17  Aligned_cols=158  Identities=28%  Similarity=0.524  Sum_probs=130.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|.+|||||||+++++.+.+...+.++.+ .........++..+.+.+|||+|++.+..++..++.++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            47999999999999999999999988877777665 33445566677788899999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      ||++++.+++++..|+..+....  .+.|+++|+||+|+.....  ..+...+....+.+++++||+++.|+.+++.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999888888777642  5789999999999854322  2233445555567899999999999999999998


Q ss_pred             HHH
Q psy125          165 RKL  167 (385)
Q Consensus       165 ~~l  167 (385)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.93  E-value=6.1e-24  Score=175.31  Aligned_cols=158  Identities=34%  Similarity=0.691  Sum_probs=143.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      ||+++|++|||||||+++|..+.+...+.++.|.+........+...+.+.+||++|++.+......++.++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999999988889999999999999999999888888889999999999999


Q ss_pred             CCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125           91 VTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                      ++++.+++.+..|+..+..... +.|+++++||.|+...+.  ..+...++...+.+++++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999988766 689999999999876332  4456778888889999999999999999999999876


Q ss_pred             h
Q psy125          168 I  168 (385)
Q Consensus       168 ~  168 (385)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            4

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04109 Rab28 Rab28 subfamily

Probab=99.93  E-value=4.7e-24  Score=183.97  Aligned_cols=160  Identities=28%  Similarity=0.500  Sum_probs=135.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC-eeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      +||+++|++|||||||+++|+.+.+...+.++.+............ ..+.+.+|||+|++.+..+...+++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999888888889998777666666543 578999999999998888888999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      ||++++.+++.+..|+..+....    .+.|+++|+||+|+...+.  ..+...+....+..++++||++|.|++++|.+
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999988988887643    2457899999999864322  23445566667788999999999999999999


Q ss_pred             HHHHHhc
Q psy125          163 LARKLIG  169 (385)
Q Consensus       163 i~~~l~~  169 (385)
                      |++.+..
T Consensus       161 l~~~l~~  167 (215)
T cd04109         161 LAAELLG  167 (215)
T ss_pred             HHHHHHh
Confidence            9998765

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04113 Rab4 Rab4 subfamily

Probab=99.92  E-value=5.5e-24  Score=175.38  Aligned_cols=157  Identities=31%  Similarity=0.625  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++++.+.....++.+..+...........+.+.+||+||++.+......+++++|++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888888888888777777777778899999999999988888888999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      |++++.++..+..|+..+... .++.|+++++||.|+.....  ..+...+....+..++++|++++.|+++++.++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            999999999988898877653 36889999999999865332  344555666777899999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04140 ARHI_like ARHI subfamily

Probab=99.92  E-value=6.5e-24  Score=175.63  Aligned_cols=156  Identities=25%  Similarity=0.436  Sum_probs=127.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++++.+...+.++.+.+. ......+...+.+.+|||+|++.+..+...++..++++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988877777776544 334455667889999999999988888888889999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      |+++..+++.+..|+..+....    .+.|+++|+||+|+...+.  ..+...+.......++++||+++.|+++++.+|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999998888877665532    5789999999999865222  223344555566789999999999999999998


Q ss_pred             HHH
Q psy125          164 ARK  166 (385)
Q Consensus       164 ~~~  166 (385)
                      +..
T Consensus       161 ~~~  163 (165)
T cd04140         161 LNL  163 (165)
T ss_pred             Hhc
Confidence            753

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04125 RabA_like RabA-like subfamily

Probab=99.92  E-value=9.3e-24  Score=178.55  Aligned_cols=161  Identities=31%  Similarity=0.597  Sum_probs=137.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++|+++.+...+.++.|.++.......++..+.+.+|||+|.+.+...+..++.++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999998887778888888877777777778899999999999988888889999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      |++++.++..+..|+..+.... .+.|+++++||.|+.....  ......+....+.+++++||+++.|+++++..+++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999988887643 4678999999999874332  233445566667799999999999999999999998


Q ss_pred             HhcC
Q psy125          167 LIGD  170 (385)
Q Consensus       167 l~~~  170 (385)
                      +...
T Consensus       161 ~~~~  164 (188)
T cd04125         161 IIKR  164 (188)
T ss_pred             HHHH
Confidence            7653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG0093|consensus

Probab=99.92  E-value=1.7e-24  Score=163.54  Aligned_cols=161  Identities=26%  Similarity=0.560  Sum_probs=146.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+|+.++|...+|||||+.++++..+...+.++.|+.+..+.+.-..+.+.+.+|||.|+++++.+.-.++++++++|++
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiLm  100 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM  100 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEEE
Confidence            46999999999999999999999999999999999999888777777889999999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||+++.++|..+..|...+... ..+.++|+++||||+..++.  .+....++...+..+|+.|++.+.+++++|..+..
T Consensus       101 yDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv~  180 (193)
T KOG0093|consen  101 YDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLVD  180 (193)
T ss_pred             EecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHHH
Confidence            9999999999999999888763 35899999999999987765  45566788889999999999999999999999888


Q ss_pred             HHhc
Q psy125          166 KLIG  169 (385)
Q Consensus       166 ~l~~  169 (385)
                      .+..
T Consensus       181 ~Ic~  184 (193)
T KOG0093|consen  181 IICD  184 (193)
T ss_pred             HHHH
Confidence            7754

>cd04116 Rab9 Rab9 subfamily

Probab=99.92  E-value=8.2e-24  Score=176.00  Aligned_cols=159  Identities=31%  Similarity=0.657  Sum_probs=134.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+++|++|||||||+++++.+.+...+.++.|.+........+...+.+.+||+||++.+..++..+++++|++++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   83 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL   83 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence            45899999999999999999999988888888888877766677778888999999999999988888899999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcC-CeEEEEcCCCCCChHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKN-LQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~  160 (385)
                      |||++++.+++.+..|+..+....     .+.|+++++||.|+..... ..+..++....+ ..++++||+++.|+.+++
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~  163 (170)
T cd04116          84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAF  163 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHH
Confidence            999999999999888888776532     4679999999999864332 344555656555 489999999999999999


Q ss_pred             HHHHHH
Q psy125          161 LWLARK  166 (385)
Q Consensus       161 ~~i~~~  166 (385)
                      ..+++.
T Consensus       164 ~~~~~~  169 (170)
T cd04116         164 EEAVRR  169 (170)
T ss_pred             HHHHhh
Confidence            998864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd01864 Rab19 Rab19 subfamily

Probab=99.92  E-value=8.2e-24  Score=175.09  Aligned_cols=159  Identities=31%  Similarity=0.609  Sum_probs=133.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+++|++|+|||||+++++++.+...+.++.+.+............+.+.+|||||++.+......+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999888888778888877766667777777899999999999888888889999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      |||++++.+++.+..|+..+... ..+.|+++|+||+|+...+.  ......+.+.... .++++|++++.|+++++..+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            99999999999988999888763 35789999999999865432  2344455555554 78999999999999999998


Q ss_pred             HHH
Q psy125          164 ARK  166 (385)
Q Consensus       164 ~~~  166 (385)
                      ++.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0095|consensus

Probab=99.92  E-value=1.3e-24  Score=164.61  Aligned_cols=162  Identities=35%  Similarity=0.628  Sum_probs=142.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      -+||+++|..|+|||+|+++|..+-+.+....++|+.+-.+...+.+..+++.+|||.|+++++++...|++.++++|+|
T Consensus         7 lfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalilv   86 (213)
T KOG0095|consen    7 LFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALILV   86 (213)
T ss_pred             eEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhcCC-CCEEEEEeCCCCcchhhh--HHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~~~-~~~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||++...+|.-++.|+.++.....+ .-.++|+||+|+.+++..  .-..++......-+.++||+.-.+++++|..++.
T Consensus        87 ydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a~  166 (213)
T KOG0095|consen   87 YDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLAC  166 (213)
T ss_pred             EecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHHH
Confidence            9999999999999999998875433 335799999999876542  2234566666667889999999999999999988


Q ss_pred             HHhcC
Q psy125          166 KLIGD  170 (385)
Q Consensus       166 ~l~~~  170 (385)
                      .+...
T Consensus       167 rli~~  171 (213)
T KOG0095|consen  167 RLISE  171 (213)
T ss_pred             HHHHH
Confidence            77553

>cd04112 Rab26 Rab26 subfamily

Probab=99.92  E-value=7.7e-24  Score=179.36  Aligned_cols=161  Identities=29%  Similarity=0.622  Sum_probs=136.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      +||+++|++|||||||+++++.+.+.. .+.++.+.+........++..+.+.+|||||+..+...+..++.++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999998887753 5677777777666677778889999999999998888888899999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      +|+++..+++++..|+..+.... .+.|+++++||.|+...+.  ..+...+....+.+++++||+++.|+++++.+|++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999998888988887654 3789999999999864322  33455566667789999999999999999999999


Q ss_pred             HHhcC
Q psy125          166 KLIGD  170 (385)
Q Consensus       166 ~l~~~  170 (385)
                      .+...
T Consensus       161 ~~~~~  165 (191)
T cd04112         161 ELKHR  165 (191)
T ss_pred             HHHHh
Confidence            88765

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN03110 Rab GTPase; Provisional

Probab=99.92  E-value=9.8e-24  Score=181.83  Aligned_cols=162  Identities=31%  Similarity=0.556  Sum_probs=140.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+++|++|||||||+++|+.+.+...+.++.|.++....+......+.+.+|||+|++.+......++++++++|+
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            56899999999999999999999988887888899988877777888888999999999999888888899999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |||++++.+++.+..|+..+.... .+.|+++++||+|+...+.  ......+....+.+++++||+++.|+++++..|+
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~  170 (216)
T PLN03110         91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL  170 (216)
T ss_pred             EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999989988877643 4789999999999864332  2344556666778999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      ..+.+
T Consensus       171 ~~i~~  175 (216)
T PLN03110        171 LEIYH  175 (216)
T ss_pred             HHHHH
Confidence            88755

>KOG0096|consensus

Probab=99.92  E-value=8e-25  Score=173.02  Aligned_cols=163  Identities=83%  Similarity=1.301  Sum_probs=156.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+|++++|+.|.||+++..+++.++|...|.+|.|+..+.....-+.+.+++..|||+|++.+..+...||-.+.++|+
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii   88 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII   88 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence            56899999999999999999999999999999999999988887766667899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh---------------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125          303 MFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLARKL  337 (385)
Q Consensus       303 v~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i  337 (385)
                      +||++.+.++.+                                             |+++|||++-|.+..|.|+++++
T Consensus        89 mFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~LarKl  168 (216)
T KOG0096|consen   89 MFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFERPFLWLARKL  168 (216)
T ss_pred             EeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeecccccccccchHHHhhhh
Confidence            999999999988                                             99999999999999999999999


Q ss_pred             hcCCCcccccCCCCCCCccccChhhhhHHHHHHHHhhccCCCCCCCCC
Q psy125          338 IGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL  385 (385)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (385)
                      ..+++..+.++|++.||...++.+.++..+.++-+.+..+.|++|+++
T Consensus       169 ~G~p~Lefva~paLaPpev~~d~~~~~q~e~dl~~a~t~~lp~ed~~~  216 (216)
T KOG0096|consen  169 TGDPSLEFVAMPALAPPEVIMDYWLQRQHEHDLAEAQTTALPDEDDKL  216 (216)
T ss_pred             cCCCCeEEEeccccCCCeeeccchhhHHHHHHHHHHhccCCCcccccC
Confidence            999999999999999999999999999999999999999999999864

>cd04118 Rab24 Rab24 subfamily

Probab=99.92  E-value=1.1e-23  Score=178.92  Aligned_cols=161  Identities=25%  Similarity=0.476  Sum_probs=136.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      +||+++|++|||||||+++|+.+.+.. .+.++.|.++........+..+.+.+|||+|++.+......++.++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988874 5778888877777777788889999999999998888888888999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh----h--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK----V--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~----~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      ||+++..+++.+..|+..+.....+.|+++|+||.|+....    .  ..+...+....+.+++++||+++.|+++++..
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  160 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK  160 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999988888988887655679999999999985321    1  22344555666778999999999999999999


Q ss_pred             HHHHHhcC
Q psy125          163 LARKLIGD  170 (385)
Q Consensus       163 i~~~l~~~  170 (385)
                      |++.+...
T Consensus       161 i~~~~~~~  168 (193)
T cd04118         161 VAEDFVSR  168 (193)
T ss_pred             HHHHHHHh
Confidence            99988654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04133 Rop_like Rop subfamily

Probab=99.92  E-value=1.2e-24  Score=180.74  Aligned_cols=114  Identities=29%  Similarity=0.510  Sum_probs=106.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|.++||||+|+.+|+.+.|...|.+|+|.++ ...+.+++..+++.||||+|+++|..+++.|+++++++||||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999999999998766 455677888999999999999999999999999999999999


Q ss_pred             eCCChhhhhh-----------------------------------------------------------hheeccccCCC
Q psy125          305 DVTSRITYKN-----------------------------------------------------------YYDISAKSNYN  325 (385)
Q Consensus       305 d~~~~~s~~~-----------------------------------------------------------~~e~Sak~~~~  325 (385)
                      |++++.||++                                                           |+|||||+|.|
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n  160 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN  160 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence            9999999987                                                           79999999999


Q ss_pred             chHHHHHHHHHHhc
Q psy125          326 FEKPFLWLARKLIG  339 (385)
Q Consensus       326 v~~~f~~l~~~i~~  339 (385)
                      |+++|..+++.+.+
T Consensus       161 V~~~F~~~~~~~~~  174 (176)
T cd04133         161 VKAVFDAAIKVVLQ  174 (176)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998743

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>KOG0083|consensus

Probab=99.92  E-value=2e-26  Score=171.07  Aligned_cols=113  Identities=28%  Similarity=0.651  Sum_probs=105.7

Q ss_pred             EEECCCCCCHHHHHHHHhcCccc-cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeC
Q psy125          228 VLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV  306 (385)
Q Consensus       228 ~~~G~~~vgks~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~  306 (385)
                      +++|++++|||+++.||-.+.|- ....+|+|.++..+.+.+++.+++++||||+||++|+++...||+++|+.+++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            47899999999999998877664 46789999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125          307 TSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       307 ~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                      +++.||++                                                |+|||||+|.||+.+|..|++.+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            99999999                                                999999999999999999999986


Q ss_pred             cC
Q psy125          339 GD  340 (385)
Q Consensus       339 ~~  340 (385)
                      +.
T Consensus       161 k~  162 (192)
T KOG0083|consen  161 KL  162 (192)
T ss_pred             Hh
Confidence            54

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.92  E-value=8.4e-24  Score=178.75  Aligned_cols=161  Identities=30%  Similarity=0.473  Sum_probs=132.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++|+.+.+...+.++.+..+.......+...+.+.+|||+|++.+...+..++.++|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~   80 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICY   80 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEE
Confidence            58999999999999999999999888888787776654443322366789999999999988888888899999999999


Q ss_pred             eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh------hhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHH
Q psy125           90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK------VKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~------~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~  161 (385)
                      |++++.+++++. .|+..+.....+.|+++|+||.|+....      ...+...+....+. +++++||+++.|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~  160 (187)
T cd04132          81 AVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFD  160 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHH
Confidence            999999998875 4877776655789999999999986532      13345556666666 899999999999999999


Q ss_pred             HHHHHHhcC
Q psy125          162 WLARKLIGD  170 (385)
Q Consensus       162 ~i~~~l~~~  170 (385)
                      .+++.+...
T Consensus       161 ~l~~~~~~~  169 (187)
T cd04132         161 TAIEEALKK  169 (187)
T ss_pred             HHHHHHHhh
Confidence            999987543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.92  E-value=1.6e-23  Score=173.17  Aligned_cols=159  Identities=30%  Similarity=0.557  Sum_probs=130.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+++|++|+|||||+++++.+.+...+.++.+... ......++..+.+.+|||||++.+..++..++.++|++++
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   79 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL   79 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence            358999999999999999999998877766666665433 3334566777899999999999988888899999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      |||+++..+++.+..|+..+.+.  ..+.|+++++||+|+.....  ..+...+....+.+++++||+++.|+++++..|
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            99999999999888888877663  24789999999999865432  234445556667799999999999999999999


Q ss_pred             HHHH
Q psy125          164 ARKL  167 (385)
Q Consensus       164 ~~~l  167 (385)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04144 Ras2 Ras2 subfamily

Probab=99.92  E-value=8.3e-24  Score=179.00  Aligned_cols=158  Identities=30%  Similarity=0.495  Sum_probs=130.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      ||+++|.+|||||||+++|+.+.+...+.++.+.... .....+...+.+.+|||+|++.+...+..+++++|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYR-KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            6899999999999999999988887777777765443 334566777899999999999988888999999999999999


Q ss_pred             CCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           91 VTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      +++..++..+..|+..+....    .+.|+++|+||+|+...+.  ..+...+....+..++++||+++.|+++++..++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999888888776532    4689999999999864322  2334456666677899999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       160 ~~l~~  164 (190)
T cd04144         160 RALRQ  164 (190)
T ss_pred             HHHHH
Confidence            88754

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.92  E-value=2e-23  Score=173.60  Aligned_cols=159  Identities=30%  Similarity=0.581  Sum_probs=134.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc-cchhhhhccCcEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-GLRDGYYIQGQCAII   87 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~-~~~~~~~~~~d~ill   87 (385)
                      .+||+++|++|||||||+++++.+.+...+.++.+.+............+.+.+|||+|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5799999999999999999999988887888888887777777778888999999999998776 467788899999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCC---CCChHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKS---NYNFEKPF  160 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~l~  160 (385)
                      |||++++.+++.+..|+..+....  .+.|+++|+||+|+.....  ......+......+++++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999998877633  5789999999999865443  2344556666678999999998   88999999


Q ss_pred             HHHHHHH
Q psy125          161 LWLARKL  167 (385)
Q Consensus       161 ~~i~~~l  167 (385)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9888764

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04111 Rab39 Rab39 subfamily

Probab=99.92  E-value=1.7e-23  Score=179.60  Aligned_cols=162  Identities=25%  Similarity=0.541  Sum_probs=135.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEe-CCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      .+||+++|++|||||||+++++.+.+...+.++.|.+.....+.. ....+.+.+|||+|++.+......+++++|++++
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            489999999999999999999998887777788887766655555 3457899999999999888888899999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      |||++++.+++.+..|+..+....  ...|+++++||.|+.....  ..+...+....+..++++|++++.|+++++..|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999998876532  3467889999999865322  334455666777899999999999999999999


Q ss_pred             HHHHhcC
Q psy125          164 ARKLIGD  170 (385)
Q Consensus       164 ~~~l~~~  170 (385)
                      ++.+...
T Consensus       162 ~~~~~~~  168 (211)
T cd04111         162 TQEIYER  168 (211)
T ss_pred             HHHHHHH
Confidence            9987553

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.92  E-value=1.9e-23  Score=172.78  Aligned_cols=158  Identities=27%  Similarity=0.550  Sum_probs=129.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++.+.+...+.++.+... ......+...+.+.+|||||++++...+..++.+++++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999998887777666665332 344556677899999999999998888888999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      |++++.+++.+..|+..+.+..  .+.|+++++||+|+.....  ......+....+.+++++||+++.|+++++.+|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999998888887776532  3689999999999865332  23344556666789999999999999999999988


Q ss_pred             HHh
Q psy125          166 KLI  168 (385)
Q Consensus       166 ~l~  168 (385)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.92  E-value=1.8e-24  Score=180.77  Aligned_cols=116  Identities=25%  Similarity=0.392  Sum_probs=107.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|+++||||+|+.+|+.+.|...|.||++..+ .+.+.+++..+.+.||||+|+++|..+++.||+++|++|+
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            458999999999999999999999999999999998665 4567788899999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125          303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK  321 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak  321 (385)
                      |||++++.||++                                                             |+|||||
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk  162 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  162 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence            999999999987                                                             8899999


Q ss_pred             cCCC-chHHHHHHHHHHhc
Q psy125          322 SNYN-FEKPFLWLARKLIG  339 (385)
Q Consensus       322 ~~~~-v~~~f~~l~~~i~~  339 (385)
                      +|.| |+++|..+++.++.
T Consensus       163 ~~~n~v~~~F~~~~~~~~~  181 (182)
T cd04172         163 QSENSVRDIFHVATLACVN  181 (182)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999 99999999997654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>COG1159 Era GTPase [General function prediction only]

Probab=99.92  E-value=1.3e-23  Score=180.25  Aligned_cols=219  Identities=18%  Similarity=0.162  Sum_probs=170.6

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hh
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RD   76 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~   76 (385)
                      +.+++..|+++|+||||||||+|+ +.+.....+++.+.+||.....-...+..++.++||||.......        ..
T Consensus         2 ~~~ksGfVaIiGrPNvGKSTLlN~-l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~   80 (298)
T COG1159           2 MKFKSGFVAIIGRPNVGKSTLLNA-LVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAAR   80 (298)
T ss_pred             CCceEEEEEEEcCCCCcHHHHHHH-HhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHH
Confidence            457788999999999999999999 555667788999999999998888888999999999997654332        23


Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhc--CCeEEEEcCCCC
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKK--NLQYYDISAKSN  153 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~--~~~~~~~Sa~~~  153 (385)
                      ..+..+|+++||+|++......  +.++....+. .+.|+++++||+|...... .....+.+...  ...++++||+++
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~--d~~il~~lk~-~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g  157 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPG--DEFILEQLKK-TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG  157 (298)
T ss_pred             HHhccCcEEEEEEeccccCCcc--HHHHHHHHhh-cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence            4567899999999999864432  3343333322 4679999999999876555 23333333332  348999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCC------------
Q psy125          154 YNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMD------------  221 (385)
Q Consensus       154 ~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------  221 (385)
                      .|++.+...+...+...        |++++++..+|.+.+..+.+.+||.+...+.+|.||+.....+            
T Consensus       158 ~n~~~L~~~i~~~Lpeg--------~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~~~~~~~~~I  229 (298)
T COG1159         158 DNVDTLLEIIKEYLPEG--------PWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFEEREKGLLKI  229 (298)
T ss_pred             CCHHHHHHHHHHhCCCC--------CCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEEecCCCeEEE
Confidence            99999999999998765        6789999999999999999999999999999999986553222            


Q ss_pred             -------CCeeEEEEECCCCC
Q psy125          222 -------MPSFKCVLVGDGGT  235 (385)
Q Consensus       222 -------~~~~~i~~~G~~~v  235 (385)
                             +.+.|-+++|..|.
T Consensus       230 ~a~I~Ver~sQK~IiIGk~G~  250 (298)
T COG1159         230 HATIYVERESQKGIIIGKNGA  250 (298)
T ss_pred             EEEEEEecCCccceEECCCcH
Confidence                   23567777887653

>cd01861 Rab6 Rab6 subfamily

Probab=99.92  E-value=2e-23  Score=172.03  Aligned_cols=157  Identities=30%  Similarity=0.557  Sum_probs=132.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++++.+...+.++.+.++...........+.+.+|||||+..+......++.++|++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999998888877788887777777777777789999999999988888888999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcchh-h-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRK-V-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~-~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      |++++.+++.+..|+..+..... +.|+++++||+|+.... . ..+...+....+..++++|++++.|+++++.+|++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999998889888765433 68999999999984332 2 233445556667899999999999999999998775

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=2.4e-23  Score=185.46  Aligned_cols=194  Identities=14%  Similarity=0.053  Sum_probs=146.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--------chhhhhccC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYYIQG   82 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------~~~~~~~~~   82 (385)
                      +|+|+|++|||||||+|+|++.. ...+++.+++|+.........+...+.+|||||......        ....++.++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~-~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQK-ISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc-EeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            79999999999999999977654 445667778888765544444556799999999754321        123456899


Q ss_pred             cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh-HHHHHHHHhcCC-eEEEEcCCCCCChHHHH
Q psy125           83 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-AKSIVFHRKKNL-QYYDISAKSNYNFEKPF  160 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~-~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~  160 (385)
                      |++++|+|+++..+..  ..+...+..  .+.|+++|+||+|+...... .....+...... +++++||+++.|+++++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~  156 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA  156 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence            9999999999865543  233333332  47899999999998643332 222233333333 78999999999999999


Q ss_pred             HHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhh
Q psy125          161 LWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMA  217 (385)
Q Consensus       161 ~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~  217 (385)
                      ..|...+...        |++++++..+|...+..+.+.+++.....+.++.||...
T Consensus       157 ~~l~~~l~~~--------~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~  205 (270)
T TIGR00436       157 AFIEVHLPEG--------PFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVR  205 (270)
T ss_pred             HHHHHhCCCC--------CCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEE
Confidence            9999887544        668899999999999999999999999999999997654

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.92  E-value=2.5e-23  Score=171.99  Aligned_cols=158  Identities=28%  Similarity=0.577  Sum_probs=130.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC--CCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~--~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      +||+++|++|||||||++++..+  .+...+.++.|.+......... +..+.+.+|||+|++.+..++..++.++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999998754  5777888888887766655554 46799999999999888888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      +|+|++++.++..+..|+..+.....+.|+++|+||+|+.....  ......+....+.+++++|++++.|+++++..++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA  160 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence            99999999999888889988876556789999999999865432  2222334455567899999999999999999998


Q ss_pred             HHH
Q psy125          165 RKL  167 (385)
Q Consensus       165 ~~l  167 (385)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04101         161 RAF  163 (164)
T ss_pred             HHh
Confidence            875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.92  E-value=3.1e-23  Score=171.25  Aligned_cols=159  Identities=31%  Similarity=0.613  Sum_probs=136.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|++|||||||+|+++++.+...+.++.|.++.......+...+.+.+||+||++.+...+..+++++|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            47999999999999999999999888777888888878777778888899999999999988888888889999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchh--hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      +|++++.++.....|+..+.... ...|+++++||+|+....  .......+....+..++++|++++.|+.+++.+|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999998888988877654 568899999999986422  233444566666789999999999999999999988


Q ss_pred             HH
Q psy125          166 KL  167 (385)
Q Consensus       166 ~l  167 (385)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01862 Rab7 Rab7 subfamily

Probab=99.92  E-value=3e-23  Score=172.94  Aligned_cols=161  Identities=28%  Similarity=0.642  Sum_probs=133.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++++.+.....++.+.+............+.+.+||+||++.+..++..+++++|++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999998888777788887776666677778899999999999888888888999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhcC-----CCCEEEEEeCCCCcchh--hhHHHHHHHHhcC-CeEEEEcCCCCCChHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKDRK--VKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~~-----~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~  161 (385)
                      |++++.+++....|...+.....     +.|+++++||+|+....  .......+....+ .+++++|++++.|+++++.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999998888788877665433     78999999999997322  2333444555555 6899999999999999999


Q ss_pred             HHHHHHhcC
Q psy125          162 WLARKLIGD  170 (385)
Q Consensus       162 ~i~~~l~~~  170 (385)
                      .+.+.+...
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999887653

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.92  E-value=3.1e-23  Score=171.42  Aligned_cols=159  Identities=33%  Similarity=0.719  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||++++++..+.....++.+.+............+.+.+||+||+..+......++.++|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999988887777788887777777777777889999999999888888888999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchh--hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      |++++.+++.+..|+..+.... .+.|+++++||+|+....  .......+....+.+++++|++++.|+++++..|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999998888988877644 579999999999986532  2334455666677899999999999999999999987


Q ss_pred             Hh
Q psy125          167 LI  168 (385)
Q Consensus       167 l~  168 (385)
                      +.
T Consensus       161 ~~  162 (164)
T smart00175      161 IL  162 (164)
T ss_pred             Hh
Confidence            64

Rab GTPases are implicated in vesicle trafficking.

>PLN03108 Rab family protein; Provisional

Probab=99.92  E-value=2.6e-23  Score=178.44  Aligned_cols=162  Identities=30%  Similarity=0.556  Sum_probs=138.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+|+|++|||||||+++|+.+.+...+.++.+.++...........+.+.+|||+|.+.+..++..++.++|++++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999888888888888888877777777888899999999999888888889999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |||++++.+++.+..|+..+... ..+.|+++++||+|+.....  ..+...+....+.+++++|++++.|+.+.|.+++
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~  164 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999888888776653 25789999999999865432  3445566677778999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       165 ~~~~~  169 (210)
T PLN03108        165 AKIYK  169 (210)
T ss_pred             HHHHH
Confidence            88754

>cd04142 RRP22 RRP22 subfamily

Probab=99.92  E-value=3.6e-23  Score=175.50  Aligned_cols=161  Identities=21%  Similarity=0.315  Sum_probs=126.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhhcc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYIQ   81 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~~~   81 (385)
                      +||+|+|.+|||||||+++++++.+...+.++.+..........++..+.+.+|||||...+...        ....+.+
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999998888777788776555555566777789999999997543211        2334689


Q ss_pred             CcEEEEEEeCCChhhhhcHHHHHHHHHHh----cCCCCEEEEEeCCCCcchhh--hHHHHHHHH-hcCCeEEEEcCCCCC
Q psy125           82 GQCAIIMFDVTSRITYKNVPNWHRDLVRV----CENIPIVLCGNKVDIKDRKV--KAKSIVFHR-KKNLQYYDISAKSNY  154 (385)
Q Consensus        82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~----~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~-~~~~~~~~~Sa~~~~  154 (385)
                      +|++|+|||++++.+++.+..|+..+...    ..+.|+++|+||+|+...+.  ......+.. ..+.+++++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            99999999999999999988888877664    35789999999999955332  222333332 456789999999999


Q ss_pred             ChHHHHHHHHHHHhcC
Q psy125          155 NFEKPFLWLARKLIGD  170 (385)
Q Consensus       155 gi~~l~~~i~~~l~~~  170 (385)
                      |++++|..+++.+...
T Consensus       161 ~v~~lf~~i~~~~~~~  176 (198)
T cd04142         161 HILLLFKELLISATTR  176 (198)
T ss_pred             CHHHHHHHHHHHhhcc
Confidence            9999999999887654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01875 RhoG RhoG subfamily

Probab=99.92  E-value=3.4e-24  Score=181.33  Aligned_cols=116  Identities=34%  Similarity=0.523  Sum_probs=107.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+|++++|..+||||+|+.+|..+.|...+.+|+|..+. ..+.+++..+.+.||||+|+++|+.+++.|++++|++|+|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilv   81 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIIC   81 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEEE
Confidence            489999999999999999999999999999999986654 4567788889999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------------------hheecccc
Q psy125          304 FDVTSRITYKN-------------------------------------------------------------YYDISAKS  322 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------------------~~e~Sak~  322 (385)
                      ||++++.||++                                                             |+||||++
T Consensus        82 ydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk~  161 (191)
T cd01875          82 FSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALN  161 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCCC
Confidence            99999999988                                                             88999999


Q ss_pred             CCCchHHHHHHHHHHhcC
Q psy125          323 NYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       323 ~~~v~~~f~~l~~~i~~~  340 (385)
                      |.||+++|.++++.+...
T Consensus       162 g~~v~e~f~~l~~~~~~~  179 (191)
T cd01875         162 QDGVKEVFAEAVRAVLNP  179 (191)
T ss_pred             CCCHHHHHHHHHHHHhcc
Confidence            999999999999998764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04126 Rab20 Rab20 subfamily

Probab=99.91  E-value=2.8e-23  Score=178.06  Aligned_cols=155  Identities=27%  Similarity=0.488  Sum_probs=125.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|.+|||||||+++|+.+.+.. +.++.|......    ..+.+.+.+|||+|++.+..++..+++++|++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~----~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLK----QWGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEE----EeeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999888764 466766554333    235688999999999999988899999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcc-------------------hhh--hHHHHHHHHhcC-----
Q psy125           90 DVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKD-------------------RKV--KAKSIVFHRKKN-----  142 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~-------------------~~~--~~~~~~~~~~~~-----  142 (385)
                      |++++.+|+.+..|+..+... ..+.|+++|+||+|+..                   .+.  ..+...++...+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999988777666553 35689999999999864                   111  344555666544     


Q ss_pred             ---------CeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          143 ---------LQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       143 ---------~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                               .+++++||++|.|++++|..+++.+..
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                     579999999999999999999988754

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>PRK15494 era GTPase Era; Provisional

Probab=99.91  E-value=2.6e-23  Score=190.13  Aligned_cols=197  Identities=15%  Similarity=0.166  Sum_probs=148.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc-ccch-------hhh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-GGLR-------DGY   78 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~-~~~~-------~~~   78 (385)
                      .+.++|+++|++|||||||+|+|++..+ ..+++.+++|+.........++..+.+|||||.... ..+.       ...
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~  128 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKL-SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS  128 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCce-eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence            3457999999999999999999876554 456677788877665555556678899999998432 2221       124


Q ss_pred             hccCcEEEEEEeCCChhhhhcHHH-HHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcC--CeEEEEcCCCCCC
Q psy125           79 YIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN--LQYYDISAKSNYN  155 (385)
Q Consensus        79 ~~~~d~illV~d~~~~~~~~~~~~-~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~g  155 (385)
                      +.++|++++|+|..+  ++..... ++..+..  .+.|.++|+||+|+... ...+...++....  ..++++||+++.|
T Consensus       129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~--~~~p~IlViNKiDl~~~-~~~~~~~~l~~~~~~~~i~~iSAktg~g  203 (339)
T PRK15494        129 LHSADLVLLIIDSLK--SFDDITHNILDKLRS--LNIVPIFLLNKIDIESK-YLNDIKAFLTENHPDSLLFPISALSGKN  203 (339)
T ss_pred             hhhCCEEEEEEECCC--CCCHHHHHHHHHHHh--cCCCEEEEEEhhcCccc-cHHHHHHHHHhcCCCcEEEEEeccCccC
Confidence            678999999999765  3444333 3444332  35678899999998643 2233334443333  5789999999999


Q ss_pred             hHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhh
Q psy125          156 FEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMA  217 (385)
Q Consensus       156 i~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~  217 (385)
                      +++++.+|...+...        |++++++..+|...+..+.+.+|+.+..++.+|.||...
T Consensus       204 v~eL~~~L~~~l~~~--------~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~  257 (339)
T PRK15494        204 IDGLLEYITSKAKIS--------PWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLT  257 (339)
T ss_pred             HHHHHHHHHHhCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEE
Confidence            999999999987654        679999999999999999999999999999999997654

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.91  E-value=3.5e-23  Score=172.88  Aligned_cols=157  Identities=28%  Similarity=0.492  Sum_probs=129.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeC
Q psy125           12 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV   91 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~   91 (385)
                      |+++|++|||||||+++++.+.+...+.++.+..+. .....+...+.+.+|||+|++.+..++..++.++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            589999999999999999998888777777665543 3445667788999999999998888888899999999999999


Q ss_pred             CChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEEcCCCCCC
Q psy125           92 TSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDISAKSNYN  155 (385)
Q Consensus        92 ~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~Sa~~~~g  155 (385)
                      +++.+++.+. .|+..+.....+.|+++|+||+|+.....              ..+...+....+. .++++||+++.|
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  159 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG  159 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            9999999875 58888877667899999999999864221              2233446666665 899999999999


Q ss_pred             hHHHHHHHHHHHhc
Q psy125          156 FEKPFLWLARKLIG  169 (385)
Q Consensus       156 i~~l~~~i~~~l~~  169 (385)
                      +++++..+++.+.+
T Consensus       160 v~~lf~~l~~~~~~  173 (174)
T smart00174      160 VREVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999988643

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.91  E-value=3.8e-24  Score=184.36  Aligned_cols=117  Identities=22%  Similarity=0.341  Sum_probs=108.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|+++||||+|+.+|..+.|...|.+|++..+. ..+.+++..+.+.||||+|+++|..+++.||+++|++|+
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIl   90 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL   90 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEE
Confidence            4689999999999999999999999999999999987764 457788899999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125          303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK  321 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak  321 (385)
                      |||++++.||++                                                             |+|||||
T Consensus        91 VyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAk  170 (232)
T cd04174          91 CFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAF  170 (232)
T ss_pred             EEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCC
Confidence            999999999985                                                             7899999


Q ss_pred             cCC-CchHHHHHHHHHHhcC
Q psy125          322 SNY-NFEKPFLWLARKLIGD  340 (385)
Q Consensus       322 ~~~-~v~~~f~~l~~~i~~~  340 (385)
                      +|. ||+++|..+++.+++.
T Consensus       171 tg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         171 TSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             cCCcCHHHHHHHHHHHHHHh
Confidence            998 8999999999998764

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01892 Miro2 Miro2 subfamily

Probab=99.91  E-value=4.1e-23  Score=171.31  Aligned_cols=161  Identities=17%  Similarity=0.237  Sum_probs=131.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCC-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      .+.+||+++|.+|||||||+++++++.+. ..+.++.+..+........+..+.+.+||++|.+.+..++..++.++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            45789999999999999999999998887 77888888777666666677778999999999998888888889999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~  162 (385)
                      ++|+|++++.+++.+..|+..+.. ..+.|+++|+||+|+.....  ..+...+....+. .++++||+++.|+.+++..
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            999999999999888777776532 24789999999999864332  1223345555554 4689999999999999999


Q ss_pred             HHHHHh
Q psy125          163 LARKLI  168 (385)
Q Consensus       163 i~~~l~  168 (385)
                      +++.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            999875

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=99.91  E-value=8e-23  Score=168.42  Aligned_cols=157  Identities=33%  Similarity=0.628  Sum_probs=133.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++++.+.....++.+.++...........+.+.+|||||++.+......+++++|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999988887778888888877776777777899999999999888888888899999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      |++++.+++.+..|+..+....  .+.|+++++||+|+..... ..+...+......+++++|++++.|+++++..+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            9999999998888888776643  5788999999999873332 334555666778899999999999999999988765

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04128 Spg1 Spg1p

Probab=99.91  E-value=7.1e-24  Score=177.65  Aligned_cols=117  Identities=28%  Similarity=0.451  Sum_probs=110.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|..|||||+|+.+|+.+.|...|.+|+|.++..+.+.+++..+.+.||||+|+++|..+++.+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999999999999999998888888888899999999999999999999999999999999


Q ss_pred             eCCChhhhhh----------------------------------------------------hheeccccCCCchHHHHH
Q psy125          305 DVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       305 d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |++++.||++                                                    |++|||++|.||+++|.+
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~pilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~  160 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKI  160 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999988                                                    799999999999999999


Q ss_pred             HHHHHhcCC
Q psy125          333 LARKLIGDP  341 (385)
Q Consensus       333 l~~~i~~~~  341 (385)
                      +++.+..-+
T Consensus       161 l~~~l~~~~  169 (182)
T cd04128         161 VLAKAFDLP  169 (182)
T ss_pred             HHHHHHhcC
Confidence            999997644

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PLN03118 Rab family protein; Provisional

Probab=99.91  E-value=1.2e-22  Score=174.90  Aligned_cols=165  Identities=29%  Similarity=0.543  Sum_probs=134.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ...+||+++|++|||||||+++|+++.+ ..+.++.|.++.......+...+.+.+|||||++.+..++..+++.+|++|
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            3468999999999999999999887765 567788888777777777777899999999999999888899999999999


Q ss_pred             EEEeCCChhhhhcHHH-HHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           87 IMFDVTSRITYKNVPN-WHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~-~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      +|||++++.+++.+.. |...+...  ..+.|+++|+||.|+.....  ..+...+....+..++++||+++.|+++++.
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~  170 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE  170 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999988765 54444332  24578999999999864332  2334455666677899999999999999999


Q ss_pred             HHHHHHhcCCC
Q psy125          162 WLARKLIGDPN  172 (385)
Q Consensus       162 ~i~~~l~~~~~  172 (385)
                      .|++.+...+.
T Consensus       171 ~l~~~~~~~~~  181 (211)
T PLN03118        171 ELALKIMEVPS  181 (211)
T ss_pred             HHHHHHHhhhh
Confidence            99999876543

>cd04131 Rnd Rnd subfamily

Probab=99.91  E-value=8.4e-24  Score=176.47  Aligned_cols=113  Identities=24%  Similarity=0.390  Sum_probs=105.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|++|||||+|+++|..+.|...+.+|++..+ .+.+.+++..+.+.||||+|+++|..+++.|++++|++|+||
T Consensus         2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvf   80 (178)
T cd04131           2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICF   80 (178)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEE
Confidence            6999999999999999999999999999999998665 456778889999999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125          305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~  323 (385)
                      |++++.||++                                                             |+||||++|
T Consensus        81 dit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~~  160 (178)
T cd04131          81 DISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFTS  160 (178)
T ss_pred             ECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCcC
Confidence            9999999987                                                             799999999


Q ss_pred             CC-chHHHHHHHHHHh
Q psy125          324 YN-FEKPFLWLARKLI  338 (385)
Q Consensus       324 ~~-v~~~f~~l~~~i~  338 (385)
                      .| |+++|..+++..+
T Consensus       161 ~~~v~~~F~~~~~~~~  176 (178)
T cd04131         161 EKSVRDIFHVATMACL  176 (178)
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            95 9999999999655

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.91  E-value=6.6e-23  Score=173.23  Aligned_cols=156  Identities=22%  Similarity=0.412  Sum_probs=122.2

Q ss_pred             ceEEEEEcCCCCcHHHHHH-HHhcCC-----CCCccccccee-eeEEEE--------EEeCCeeEEEEEEeCCCcccccc
Q psy125            9 SFKCVLVGDGGTGKTTFVK-RHLTGE-----FEKKYVATLGV-EVHPLV--------FHTNRGAIRFNVWDTAGQEKFGG   73 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin-~ll~~~-----~~~~~~~~~g~-t~~~~~--------~~~~~~~~~~~i~Dt~g~~~~~~   73 (385)
                      .+||+++|..|||||||+. ++..+.     +...+.|+.|. +.....        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4799999999999999996 544432     34556677752 222211        14567789999999999875  2


Q ss_pred             chhhhhccCcEEEEEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcch--------------------h-hh
Q psy125           74 LRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR--------------------K-VK  131 (385)
Q Consensus        74 ~~~~~~~~~d~illV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~--------------------~-~~  131 (385)
                      ....+++++|++|+|||++++.+++++. .|+..+.....+.|+++|+||+|+...                    . ..
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            4456889999999999999999999886 588888766678899999999998531                    1 14


Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125          132 AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus       132 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      .+...+++..+.+++++||+++.|++++|..++++
T Consensus       160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            45677888888899999999999999999998874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG1707|consensus

Probab=99.91  E-value=7.5e-23  Score=188.32  Aligned_cols=182  Identities=19%  Similarity=0.254  Sum_probs=137.6

Q ss_pred             CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc
Q psy125            1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI   80 (385)
Q Consensus         1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~   80 (385)
                      |+..+..+.+||+|+|+.|+|||||+-.++...+.+.+.+......-+  ....-..+...++||+..+..+......++
T Consensus         1 ~~~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP--advtPe~vpt~ivD~ss~~~~~~~l~~Eir   78 (625)
T KOG1707|consen    1 MSDDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP--ADVTPENVPTSIVDTSSDSDDRLCLRKEIR   78 (625)
T ss_pred             CCCccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC--CccCcCcCceEEEecccccchhHHHHHHHh
Confidence            677888899999999999999999999999998888877655422222  222334566899999876655556677889


Q ss_pred             cCcEEEEEEeCCChhhhhcHH-HHHHHHHHhc---CCCCEEEEEeCCCCcchhhh--HH-HHH-H-HHhcCCeEEEEcCC
Q psy125           81 QGQCAIIMFDVTSRITYKNVP-NWHRDLVRVC---ENIPIVLCGNKVDIKDRKVK--AK-SIV-F-HRKKNLQYYDISAK  151 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~-~~~~~l~~~~---~~~~~ilv~nK~Dl~~~~~~--~~-~~~-~-~~~~~~~~~~~Sa~  151 (385)
                      ++|++.+||+++++.+.+.+. .|+..+++..   .+.|+|+|+||+|+......  .. ..- + .......+++|||+
T Consensus        79 kA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~  158 (625)
T KOG1707|consen   79 KADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSAL  158 (625)
T ss_pred             hcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhh
Confidence            999999999999999988766 5999888865   68999999999998654332  11 111 1 11122368899999


Q ss_pred             CCCChHHHHHHHHHHHhcCCCcccccCCCCCCC
Q psy125          152 SNYNFEKPFLWLARKLIGDPNLEFVAMPALLPP  184 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep  184 (385)
                      +..++.++|....+++.+....++...+.-..|
T Consensus       159 ~~~n~~e~fYyaqKaVihPt~PLyda~~qelkp  191 (625)
T KOG1707|consen  159 TLANVSELFYYAQKAVIHPTSPLYDAEEQELKP  191 (625)
T ss_pred             hhhhhHhhhhhhhheeeccCccccccccccccH
Confidence            999999999999999988777776554444444

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.91  E-value=1e-22  Score=169.85  Aligned_cols=155  Identities=26%  Similarity=0.473  Sum_probs=126.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|+|||||+++++++.+...+.++... ........++..+.+.+|||+|++.+...+..++.++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD-NFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            58999999999999999999998888877777533 33344566777899999999999988888888999999999999


Q ss_pred             eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcCC-eEEEEcCCCC
Q psy125           90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKNL-QYYDISAKSN  153 (385)
Q Consensus        90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~Sa~~~  153 (385)
                      |++++.+++.+. .|+..+.....+.|+++++||.|+....              ...+...++...+. .++++||+++
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~  159 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ  159 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            999999998875 5887776655679999999999985421              12334556666666 8999999999


Q ss_pred             CChHHHHHHHHH
Q psy125          154 YNFEKPFLWLAR  165 (385)
Q Consensus       154 ~gi~~l~~~i~~  165 (385)
                      .|+++++..++.
T Consensus       160 ~~v~~lf~~~~~  171 (173)
T cd04130         160 KNLKEVFDTAIL  171 (173)
T ss_pred             CCHHHHHHHHHh
Confidence            999999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.91  E-value=8.2e-23  Score=167.24  Aligned_cols=150  Identities=22%  Similarity=0.330  Sum_probs=119.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++.+.+...+.++.+ .+ ......++..+.+.+|||+|++.     ..++.++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            5899999999999999999998887766555433 22 24456677788899999999964     34668899999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcc---hhh-hHHHHHHHHhc-CCeEEEEcCCCCCChHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKD---RKV-KAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~---~~~-~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      |++++.+|+++..|+..+....  .+.|+++|+||.|+..   +.. ..+..++.+.. ...++++||+++.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999989998887653  5689999999999742   112 23344565554 479999999999999999999


Q ss_pred             HHHH
Q psy125          163 LARK  166 (385)
Q Consensus       163 i~~~  166 (385)
                      +++.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            8864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.91  E-value=1e-22  Score=178.04  Aligned_cols=157  Identities=26%  Similarity=0.504  Sum_probs=128.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|.+|||||||+++|+.+.+...+.++.+ +.....+...+..+.+.+|||+|.+.+..++..++.++|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999988887778776 334455667777899999999999888877778889999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHh----------cCCCCEEEEEeCCCCcchh--hhHHHHHHHHh-cCCeEEEEcCCCCCCh
Q psy125           90 DVTSRITYKNVPNWHRDLVRV----------CENIPIVLCGNKVDIKDRK--VKAKSIVFHRK-KNLQYYDISAKSNYNF  156 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~----------~~~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~-~~~~~~~~Sa~~~~gi  156 (385)
                      |+++..+|+.+..|+..+...          ..+.|+++++||+|+....  ...+..++... ....++++||+++.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999988888877642          2478999999999986422  22333334332 3568999999999999


Q ss_pred             HHHHHHHHHHH
Q psy125          157 EKPFLWLARKL  167 (385)
Q Consensus       157 ~~l~~~i~~~l  167 (385)
                      ++++..|+..+
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG0091|consensus

Probab=99.91  E-value=1.4e-23  Score=161.49  Aligned_cols=162  Identities=24%  Similarity=0.528  Sum_probs=141.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ..+|..+||++-+|||+|++.|..+++.....|+.|+++....+... +..+++.+|||.|+++++++...|+++.-+++
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl   86 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL   86 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence            45899999999999999999999999999999999999877766654 45799999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc--CCCCE-EEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC--ENIPI-VLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~-ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      +|||++++++|+.+..|..+.....  +.+++ .+|++|+|+...+.  .++...++...+..++++|++++.|+++.+.
T Consensus        87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~  166 (213)
T KOG0091|consen   87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD  166 (213)
T ss_pred             EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence            9999999999999999998765533  34444 58899999976554  5667788999999999999999999999999


Q ss_pred             HHHHHHhc
Q psy125          162 WLARKLIG  169 (385)
Q Consensus       162 ~i~~~l~~  169 (385)
                      .|++.+..
T Consensus       167 mlaqeIf~  174 (213)
T KOG0091|consen  167 MLAQEIFQ  174 (213)
T ss_pred             HHHHHHHH
Confidence            99887643

>cd04149 Arf6 Arf6 subfamily

Probab=99.91  E-value=4.7e-23  Score=170.71  Aligned_cols=156  Identities=21%  Similarity=0.315  Sum_probs=120.4

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      |.++.+||+++|++|||||||++++..+.+. .+.++.|.+.....    ...+.+.+|||+|++.+...+..++.++|+
T Consensus         5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~   79 (168)
T cd04149           5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQG   79 (168)
T ss_pred             cCCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence            4457899999999999999999998776654 45677776654322    256899999999999888888889999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHh-----cCCeEEEEcCCCCCChH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----KNLQYYDISAKSNYNFE  157 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~  157 (385)
                      +++|+|++++.++.....|+..+..  ...+.|+++++||+|+.......+...+...     ....++++||++|.|++
T Consensus        80 ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          80 LIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            9999999999888877777666554  2357899999999998643222333332211     22368899999999999


Q ss_pred             HHHHHHHH
Q psy125          158 KPFLWLAR  165 (385)
Q Consensus       158 ~l~~~i~~  165 (385)
                      +.+.+|++
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99998864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04122 Rab14 Rab14 subfamily

Probab=99.91  E-value=1e-23  Score=174.63  Aligned_cols=115  Identities=34%  Similarity=0.635  Sum_probs=109.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|.+|||||++++++..+.|...+.+|+|.++....+.+++..+.+.||||||+++|..++..++++++++|+||
T Consensus         3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   82 (166)
T cd04122           3 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVY   82 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEE
Confidence            79999999999999999999999999999999998888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |++++.||++                                                |+||||++|.||+++|.+++++
T Consensus        83 d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~  162 (166)
T cd04122          83 DITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKK  162 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999987                                                8999999999999999999998


Q ss_pred             Hhc
Q psy125          337 LIG  339 (385)
Q Consensus       337 i~~  339 (385)
                      +.+
T Consensus       163 ~~~  165 (166)
T cd04122         163 IYQ  165 (166)
T ss_pred             Hhh
Confidence            865

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04148 RGK RGK subfamily

Probab=99.91  E-value=3.1e-22  Score=172.92  Aligned_cols=159  Identities=21%  Similarity=0.317  Sum_probs=127.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc-cCcEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI-QGQCAII   87 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~-~~d~ill   87 (385)
                      +||+++|++|||||||+++|+.+.+. ..+.++.+.+.......++...+.+.+|||+|++.  .....++. ++|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEM--WTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcch--HHHhHHhhcCCCEEEE
Confidence            58999999999999999998888776 56666665455556667777889999999999972  22344556 8999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      |||++++.+++.+..|+..+....  .+.|+++|+||+|+...+.  ..+...+....+..++++||+++.|+++++..+
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999998888888776642  5789999999999865432  233345566667789999999999999999999


Q ss_pred             HHHHhcC
Q psy125          164 ARKLIGD  170 (385)
Q Consensus       164 ~~~l~~~  170 (385)
                      ++.+...
T Consensus       159 ~~~~~~~  165 (221)
T cd04148         159 VRQIRLR  165 (221)
T ss_pred             HHHHHhh
Confidence            9988643

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.91  E-value=2.1e-23  Score=172.51  Aligned_cols=120  Identities=93%  Similarity=1.515  Sum_probs=111.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|++|||||+++++++.+.+...+.+|++.++....+..++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999999998899999998888887777888899999999999999999999999999999999


Q ss_pred             eCCChhhhhh---------------------------------------------hheeccccCCCchHHHHHHHHHHhc
Q psy125          305 DVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       305 d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                      |++++.||++                                             |+||||++|.||+++|.+|++++.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            9999999976                                             8999999999999999999999988


Q ss_pred             CCCcc
Q psy125          340 DPNLE  344 (385)
Q Consensus       340 ~~~~~  344 (385)
                      .+..+
T Consensus       161 ~~~~~  165 (166)
T cd00877         161 NPNLE  165 (166)
T ss_pred             ccccc
Confidence            76654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG0088|consensus

Probab=99.90  E-value=6.6e-24  Score=162.39  Aligned_cols=163  Identities=29%  Similarity=0.528  Sum_probs=144.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      -.+||+++|..-||||||+-+++.++|......+....+..+.+.+......+.||||.|+++|..+-.-|+++.+++++
T Consensus        12 ~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGalL   91 (218)
T KOG0088|consen   12 FKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGALL   91 (218)
T ss_pred             eeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceEE
Confidence            46899999999999999999999999998888887777777777777788999999999999999999999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |||++++.+|+.+..|..+++.... .+.+++|+||+|+..++.  .++...+++.-+..++++||+.+.|+.++|..+.
T Consensus        92 VyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt  171 (218)
T KOG0088|consen   92 VYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLT  171 (218)
T ss_pred             EEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHH
Confidence            9999999999999999999988554 467889999999977554  5566778888899999999999999999999998


Q ss_pred             HHHhcC
Q psy125          165 RKLIGD  170 (385)
Q Consensus       165 ~~l~~~  170 (385)
                      ..+.+.
T Consensus       172 ~~MiE~  177 (218)
T KOG0088|consen  172 AKMIEH  177 (218)
T ss_pred             HHHHHH
Confidence            877654

>cd04177 RSR1 RSR1 subgroup

Probab=99.90  E-value=2e-22  Score=167.24  Aligned_cols=158  Identities=25%  Similarity=0.525  Sum_probs=130.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|++|||||||++++..+.+...+.++.+... ..........+.+.+|||||++.+..++..++.+++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            47999999999999999999998888777777776443 34455667789999999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcC-CeEEEEcCCCCCChHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      ||++++.+++.+..|...+...  ..+.|+++++||.|+...+.  ..+...+.+..+ .+++++||+++.|+.+++.++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            9999999999888888777652  34789999999999865332  223334445555 689999999999999999999


Q ss_pred             HHHH
Q psy125          164 ARKL  167 (385)
Q Consensus       164 ~~~l  167 (385)
                      ++.+
T Consensus       160 ~~~~  163 (168)
T cd04177         160 VRQI  163 (168)
T ss_pred             HHHH
Confidence            8765

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.90  E-value=7.3e-23  Score=176.74  Aligned_cols=164  Identities=76%  Similarity=1.278  Sum_probs=153.1

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+|++++|++||||||++++++.+.+...+.+|++.++....+..+++.+.+.+|||+|+++|..++..|+++++++|
T Consensus         7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i   86 (215)
T PTZ00132          7 VPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAI   86 (215)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEE
Confidence            35689999999999999999999999999999999999998888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh---------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          302 IMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       302 lv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      +|||++++.||++                                             |+++||++|.||+++|.+|++.
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~  166 (215)
T PTZ00132         87 IMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARR  166 (215)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999854                                             7899999999999999999999


Q ss_pred             HhcCCCcccccCCCCCCCccccChhhhhHHHHHHHHhhccCCCCCCCCC
Q psy125          337 LIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL  385 (385)
Q Consensus       337 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (385)
                      +..++.......|...+....++....++..+-+.+...-+.||++++|
T Consensus       167 l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (215)
T PTZ00132        167 LTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANVPLPDDDDDL  215 (215)
T ss_pred             HhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhhCCCCCCcCCC
Confidence            9999999999999988888999999999999999999999999999875

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.90  E-value=1.4e-23  Score=174.61  Aligned_cols=116  Identities=25%  Similarity=0.438  Sum_probs=106.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+.+|..+.|...+.+|.+..+ ...+.+++..+.+.||||+|+++|..++..|++++|++|+|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            37999999999999999999999999989999987554 45567788889999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      ||++++.||++                                                 |+||||++|.||+++|.+|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999998                                                 89999999999999999999


Q ss_pred             HHHhcC
Q psy125          335 RKLIGD  340 (385)
Q Consensus       335 ~~i~~~  340 (385)
                      +++.++
T Consensus       161 ~~~~~~  166 (172)
T cd04141         161 REIRRK  166 (172)
T ss_pred             HHHHHh
Confidence            998763

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.90  E-value=1.4e-23  Score=179.30  Aligned_cols=117  Identities=37%  Similarity=0.704  Sum_probs=109.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      +||+++|.+|||||+|+++|+.+.|...+.+|+|.++....+.++ +..+.+.+|||||+++|..++..|+++++++|+|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999999999999999998888888887 7788999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-----------------------------------------------------hheeccccCCCchHHH
Q psy125          304 FDVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       304 ~d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      ||++++.||++                                                     |+||||++|.||+++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999875                                                     8999999999999999


Q ss_pred             HHHHHHHhcCC
Q psy125          331 LWLARKLIGDP  341 (385)
Q Consensus       331 ~~l~~~i~~~~  341 (385)
                      .+|++.+....
T Consensus       161 ~~l~~~l~~~~  171 (201)
T cd04107         161 RFLVKNILAND  171 (201)
T ss_pred             HHHHHHHHHhc
Confidence            99999998754

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.90  E-value=9.9e-23  Score=170.66  Aligned_cols=159  Identities=21%  Similarity=0.301  Sum_probs=122.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|..|||||||++++..+.+. .+.|+.|.+...    .+...+.+.+||+||++.++.++..+++++|++|
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~----~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI   89 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI   89 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45689999999999999999998776664 456777765432    2335689999999999988888999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcC-----CeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN-----LQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|++++.++.....++..+..  ...+.|+++++||+|+.......+.........     ..++++||++|.|+++.
T Consensus        90 ~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~  169 (181)
T PLN00223         90 FVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEG  169 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHH
Confidence            99999999988877666665543  235789999999999875443333222221111     24568999999999999


Q ss_pred             HHHHHHHHhcC
Q psy125          160 FLWLARKLIGD  170 (385)
Q Consensus       160 ~~~i~~~l~~~  170 (385)
                      +.+|+..+..+
T Consensus       170 ~~~l~~~~~~~  180 (181)
T PLN00223        170 LDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHhhc
Confidence            99999887543

>cd04158 ARD1 ARD1 subfamily

Probab=99.90  E-value=1.1e-22  Score=168.90  Aligned_cols=158  Identities=22%  Similarity=0.368  Sum_probs=122.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      ||+++|.+|||||||++++.++.+. .+.++.|....    ......+.+.+|||||+..+...+..++.++|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~~~~T~~~~~~----~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFM-QPIPTIGFNVE----TVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCceeEE----EEEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            6899999999999999998877554 35666664443    223357899999999999888888889999999999999


Q ss_pred             CCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHhc------CCeEEEEcCCCCCChHHHHHH
Q psy125           91 VTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRKK------NLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      ++++.++.++..|+..+...  ..+.|+++++||+|+.......+...+....      ...++++||+++.|++++|.+
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~  155 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW  155 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence            99999998888888777642  2458999999999986543333333333221      126778999999999999999


Q ss_pred             HHHHHhcCCCc
Q psy125          163 LARKLIGDPNL  173 (385)
Q Consensus       163 i~~~l~~~~~~  173 (385)
                      |++.+...+.+
T Consensus       156 l~~~~~~~~~~  166 (169)
T cd04158         156 LSRQLVAAGVL  166 (169)
T ss_pred             HHHHHhhcccc
Confidence            99988776443

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04135 Tc10 TC10 subfamily

Probab=99.90  E-value=2.6e-22  Score=167.58  Aligned_cols=157  Identities=25%  Similarity=0.421  Sum_probs=127.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|+|||||+++++.+.+...+.++.+..... ........+.+.+|||+|...+...+..++..+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            589999999999999999999988877777776544332 4556667788999999999988888888999999999999


Q ss_pred             eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEEcCCCC
Q psy125           90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDISAKSN  153 (385)
Q Consensus        90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~Sa~~~  153 (385)
                      |++++.+++.+. .|+..+.....+.|+++++||+|+.+...              ..+...+.+..+. .++++||+++
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  159 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence            999999998875 57777765567899999999999854321              1233445555554 7999999999


Q ss_pred             CChHHHHHHHHHHH
Q psy125          154 YNFEKPFLWLARKL  167 (385)
Q Consensus       154 ~gi~~l~~~i~~~l  167 (385)
                      .|++++|..++..+
T Consensus       160 ~gi~~~f~~~~~~~  173 (174)
T cd04135         160 KGLKTVFDEAILAI  173 (174)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04123 Rab21 Rab21 subfamily

Probab=99.90  E-value=3e-22  Score=165.10  Aligned_cols=158  Identities=31%  Similarity=0.587  Sum_probs=130.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|+|||||+++++.+.+.....++.+.+............+.+.+||++|++.+..++..++.++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999988776666666665655555666677789999999999888888888889999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhcC-CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      |+++..+++.+..|+..+..... +.|+++++||+|+.....  ..+...+....+..++++|++++.|+++++.++++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999888888888776433 689999999999874332  334445566677889999999999999999999886


Q ss_pred             H
Q psy125          167 L  167 (385)
Q Consensus       167 l  167 (385)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.90  E-value=2.1e-22  Score=166.62  Aligned_cols=156  Identities=20%  Similarity=0.348  Sum_probs=124.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc-cccchhhhhccCcEEEEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~-~~~~~~~~~~~~d~illV~   89 (385)
                      ||+++|++|||||||+++++.+.+...+.++.+... ......++..+.+.+||+||... .......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999998777666666654333 34456677888999999999885 3345667889999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHh---cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCC-CChHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSN-YNFEKPFLWL  163 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~---~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~-~gi~~l~~~i  163 (385)
                      |++++.+++.+..|+..+...   ..+.|+++|+||+|+.....  ..+...+....+.+++++|++++ .|++++|..+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            999999999888888777664   24799999999999854322  33445566666789999999999 4999999999


Q ss_pred             HHHH
Q psy125          164 ARKL  167 (385)
Q Consensus       164 ~~~l  167 (385)
                      ++.+
T Consensus       160 ~~~~  163 (165)
T cd04146         160 CREV  163 (165)
T ss_pred             HHHH
Confidence            9865

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.90  E-value=2.6e-23  Score=178.32  Aligned_cols=117  Identities=25%  Similarity=0.428  Sum_probs=108.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+|+.+|..+.|...|.||++..+. ..+.+++..+.+.||||+|++.|..+++.+|+++|++|+||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            69999999999999999999999999999999986664 56778889999999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125          305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~  323 (385)
                      |++++.||++                                                             |+||||+++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~  160 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS  160 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            9999999988                                                             899999999


Q ss_pred             CC-chHHHHHHHHHHhcCCC
Q psy125          324 YN-FEKPFLWLARKLIGDPN  342 (385)
Q Consensus       324 ~~-v~~~f~~l~~~i~~~~~  342 (385)
                      .| |+++|..+++..+.+.+
T Consensus       161 ~~~V~~~F~~~~~~~~~~~~  180 (222)
T cd04173         161 ERSVRDVFHVATVASLGRGH  180 (222)
T ss_pred             CcCHHHHHHHHHHHHHhccC
Confidence            85 99999999998877554

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd00154 Rab Rab family

Probab=99.90  E-value=2.9e-22  Score=164.30  Aligned_cols=155  Identities=35%  Similarity=0.731  Sum_probs=134.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++++.+.....++.+.++...........+.+.+||+||...+......+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999988888888888998888888888888899999999999888788888999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCc--chhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIK--DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |++++.++..+..|+..+.... ...|+++++||+|+.  ......+...+......+++++|++++.|+++++.+|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            9999988988888888877654 578999999999985  23334455566666788999999999999999998875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.90  E-value=2.3e-22  Score=167.73  Aligned_cols=156  Identities=24%  Similarity=0.344  Sum_probs=119.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ...+||+++|++|||||||++++..+.+. .+.++.|......    ....+.+.+|||+|+..+..++..++.++|++|
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~----~~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETV----TYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEE----EECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            45799999999999999999998777664 4567776554322    225689999999999998888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|++++.+++....|+..+..  ...+.|+++++||+|+.......+......     .....++++||++|.|++++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  165 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG  165 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence            99999999988887777766654  235789999999999865332222222111     12235678999999999999


Q ss_pred             HHHHHHHH
Q psy125          160 FLWLARKL  167 (385)
Q Consensus       160 ~~~i~~~l  167 (385)
                      +.+|+..+
T Consensus       166 ~~~l~~~~  173 (175)
T smart00177      166 LTWLSNNL  173 (175)
T ss_pred             HHHHHHHh
Confidence            99998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.90  E-value=4.8e-22  Score=166.12  Aligned_cols=157  Identities=28%  Similarity=0.494  Sum_probs=126.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      .||+++|++|||||||+++++.+.+...+.++.+..... ....+...+.+.+|||+|++.+...+..++.++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            589999999999999999999988887777877655433 3456677889999999999988877777889999999999


Q ss_pred             eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcC-CeEEEEcCCCC
Q psy125           90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKN-LQYYDISAKSN  153 (385)
Q Consensus        90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~Sa~~~  153 (385)
                      |++++.+++.+. .|+..+.....+.|+++++||+|+.....              ......+....+ ..++++||+++
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence            999999988875 47777766557899999999999854321              122233444433 48999999999


Q ss_pred             CChHHHHHHHHHHH
Q psy125          154 YNFEKPFLWLARKL  167 (385)
Q Consensus       154 ~gi~~l~~~i~~~l  167 (385)
                      .|++++|.+|++..
T Consensus       161 ~~v~~lf~~l~~~~  174 (175)
T cd01870         161 EGVREVFEMATRAA  174 (175)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04114 Rab30 Rab30 subfamily

Probab=99.90  E-value=7.4e-22  Score=164.00  Aligned_cols=160  Identities=33%  Similarity=0.617  Sum_probs=131.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..++|+++|++|||||||++++..+.+.....++.+..........+...+.+.+||++|+..+......++.++|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999988777777777777766666666777778899999999998888888889999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh-h-HHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |+|+++..+++.+..|+..+.... .+.|+++++||+|+..... . .....+.......++++|++++.|+.+++..|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  165 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA  165 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence            999999999988888887776543 3688999999999864332 2 223345555567899999999999999999998


Q ss_pred             HHH
Q psy125          165 RKL  167 (385)
Q Consensus       165 ~~l  167 (385)
                      +.+
T Consensus       166 ~~~  168 (169)
T cd04114         166 CRL  168 (169)
T ss_pred             HHh
Confidence            764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.90  E-value=2.3e-22  Score=165.13  Aligned_cols=151  Identities=23%  Similarity=0.337  Sum_probs=115.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|.+|||||||++++..+.+. .+.|+.|.....  .  ....+.+.+||++|++.+...+..+++++|++++|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~--~--~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEE--E--EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999998777775 466777765432  2  225688999999999988888889999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      |++++.++.....++..+..  ...+.|+++++||+|+.......+......     .....++++||++|.|+++++.+
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~  155 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW  155 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence            99999888887776666543  224689999999999864322222221111     12235779999999999999998


Q ss_pred             HHH
Q psy125          163 LAR  165 (385)
Q Consensus       163 i~~  165 (385)
                      |+.
T Consensus       156 l~~  158 (159)
T cd04150         156 LSN  158 (159)
T ss_pred             Hhc
Confidence            864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04117 Rab15 Rab15 subfamily

Probab=99.89  E-value=4.8e-23  Score=169.64  Aligned_cols=112  Identities=30%  Similarity=0.635  Sum_probs=105.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|++|||||+++++++.+.|...+.+|+|.++....+.+++..+.+.||||+|++++..++..|++++|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            48999999999999999999999999999999998888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |++++.||++                                                |+||||++|.||+++|.+|++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            9999999988                                                8999999999999999999874

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.89  E-value=7.2e-23  Score=170.71  Aligned_cols=112  Identities=29%  Similarity=0.431  Sum_probs=103.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|.+|||||+|+.+|..+.|...|.||++..+. +.+.+++..+.+.||||+|+++|..++..+++++|++|+||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            68999999999999999999999999999999986664 45667788899999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125          305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~  323 (385)
                      |++++.||++                                                             |+||||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            9999999987                                                             899999999


Q ss_pred             CCchHHHHHHHHHH
Q psy125          324 YNFEKPFLWLARKL  337 (385)
Q Consensus       324 ~~v~~~f~~l~~~i  337 (385)
                      .||+++|..+++..
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999853

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.89  E-value=7.8e-22  Score=162.94  Aligned_cols=158  Identities=28%  Similarity=0.542  Sum_probs=129.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++.+.+...+.++.+.... .....+.+.+.+.+||+||+..+...+..++..++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEE-EEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            58999999999999999999988877666666554433 34566778899999999999988888888999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcch--hhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDR--KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      |++++.++..+..|...+...  ..++|+++|+||+|+...  ........+....+.+++++|++++.|+++++..+++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            999999998888888777764  357999999999998652  2233344455566789999999999999999999988


Q ss_pred             HHh
Q psy125          166 KLI  168 (385)
Q Consensus       166 ~l~  168 (385)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04154 Arl2 Arl2 subfamily

Probab=99.89  E-value=2.7e-22  Score=167.30  Aligned_cols=155  Identities=18%  Similarity=0.306  Sum_probs=119.4

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      +.+..+||+++|++|||||||+++|.+. ....+.++.|.......  .  +.+.+.+|||||++.++..+..++.++|+
T Consensus        10 ~~~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~~~--~--~~~~l~l~D~~G~~~~~~~~~~~~~~~d~   84 (173)
T cd04154          10 LKEREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKTLE--Y--EGYKLNIWDVGGQKTLRPYWRNYFESTDA   84 (173)
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhCCCCE
Confidence            3456789999999999999999997765 44556677764433322  2  35889999999999887788889999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  157 (385)
                      +++|+|++++.++.....|+..+..  ...+.|+++++||+|+.......+...+..     ....+++++||++|.|++
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  164 (173)
T cd04154          85 LIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLL  164 (173)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHH
Confidence            9999999999888877777766654  235789999999999865433333333332     234589999999999999


Q ss_pred             HHHHHHH
Q psy125          158 KPFLWLA  164 (385)
Q Consensus       158 ~l~~~i~  164 (385)
                      +++.+++
T Consensus       165 ~l~~~l~  171 (173)
T cd04154         165 QGIDWLV  171 (173)
T ss_pred             HHHHHHh
Confidence            9998875

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.89  E-value=4.6e-22  Score=166.88  Aligned_cols=158  Identities=19%  Similarity=0.315  Sum_probs=119.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||++++..+.+.. +.++.|.+...    .+...+.+.+|||+|++.++..+..++.++|++|
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~----~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI   89 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET----VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLI   89 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE----EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            456899999999999999999987776654 56677765432    2235689999999999988888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|++++.++.....++..+..  ...+.|+++++||.|+.......+......     .....++++||+++.|++++
T Consensus        90 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~  169 (182)
T PTZ00133         90 FVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEG  169 (182)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHH
Confidence            99999999888877666665543  224689999999999865322222221111     11224668999999999999


Q ss_pred             HHHHHHHHhc
Q psy125          160 FLWLARKLIG  169 (385)
Q Consensus       160 ~~~i~~~l~~  169 (385)
                      +.+|++.+..
T Consensus       170 ~~~l~~~i~~  179 (182)
T PTZ00133        170 LDWLSANIKK  179 (182)
T ss_pred             HHHHHHHHHH
Confidence            9999987654

>cd04134 Rho3 Rho3 subfamily

Probab=99.89  E-value=1.3e-22  Score=171.39  Aligned_cols=116  Identities=31%  Similarity=0.436  Sum_probs=105.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      ||+++|.+|||||+|+++|..+.|...+.+|++..+. ..+.+++..+.+.||||+|+++|..+++.++++++++|+|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            7999999999999999999999999999999876654 456677778899999999999999999999999999999999


Q ss_pred             CCChhhhhh-------------------------------------------------------------hheeccccCC
Q psy125          306 VTSRITYKN-------------------------------------------------------------YYDISAKSNY  324 (385)
Q Consensus       306 ~~~~~s~~~-------------------------------------------------------------~~e~Sak~~~  324 (385)
                      ++++.||++                                                             |+||||++|.
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  160 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR  160 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence            999999976                                                             7899999999


Q ss_pred             CchHHHHHHHHHHhcCCC
Q psy125          325 NFEKPFLWLARKLIGDPN  342 (385)
Q Consensus       325 ~v~~~f~~l~~~i~~~~~  342 (385)
                      ||+++|.+|++.+.....
T Consensus       161 ~v~e~f~~l~~~~~~~~~  178 (189)
T cd04134         161 GVNEAFTEAARVALNVRP  178 (189)
T ss_pred             CHHHHHHHHHHHHhcccc
Confidence            999999999999986443

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG0097|consensus

Probab=99.89  E-value=1.9e-22  Score=151.44  Aligned_cols=163  Identities=30%  Similarity=0.557  Sum_probs=146.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+|..++|+-|+|||+|+..|..+++......++|+.+....+.+.+..+++.+|||.|+++++...+.|++++.++++
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |||++.+.....+..|+...... .++..+++++||.|+...+.  ..+...++...+..+.++|+++|+++++.|..-+
T Consensus        90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a  169 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA  169 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence            99999999888888898877652 35667889999999976554  5667789999999999999999999999999888


Q ss_pred             HHHhcC
Q psy125          165 RKLIGD  170 (385)
Q Consensus       165 ~~l~~~  170 (385)
                      +.+.++
T Consensus       170 kkiyqn  175 (215)
T KOG0097|consen  170 KKIYQN  175 (215)
T ss_pred             HHHHHh
Confidence            888764

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.89  E-value=1e-22  Score=169.68  Aligned_cols=111  Identities=31%  Similarity=0.489  Sum_probs=101.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|.+|||||+|+.+|+.+.|...+.+|++.. ....+.+++..+.+.||||+|+++|..+++.+++++|++|+||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceee-eEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            689999999999999999999999999999998644 3455677888899999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125          305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~  323 (385)
                      |++++.||++                                                             |+||||++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            9999999987                                                             589999999


Q ss_pred             CCchHHHHHHHHH
Q psy125          324 YNFEKPFLWLARK  336 (385)
Q Consensus       324 ~~v~~~f~~l~~~  336 (385)
                      .||+++|+.+++.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999975

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.89  E-value=5.9e-22  Score=166.56  Aligned_cols=162  Identities=20%  Similarity=0.262  Sum_probs=123.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEe-CCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ..+||+++|++|||||||+++++.+.+... .++.|.+........ ++..+.+.+|||+|++.+...+..++.++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            358999999999999999999888776543 566666555444433 446789999999999888888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH---h---cCCeEEEEcCCCCCChHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR---K---KNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~---~---~~~~~~~~Sa~~~~gi~~  158 (385)
                      +|+|++++.++.....|+..+...  ..+.|+++++||+|+.......+...+..   .   ....++++||+++.|+++
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  160 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE  160 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence            999999998887777777665542  24689999999999864322222222221   1   123578999999999999


Q ss_pred             HHHHHHHHHhcC
Q psy125          159 PFLWLARKLIGD  170 (385)
Q Consensus       159 l~~~i~~~l~~~  170 (385)
                      ++.+|++.+...
T Consensus       161 l~~~l~~~l~~~  172 (183)
T cd04152         161 GLEKLYEMILKR  172 (183)
T ss_pred             HHHHHHHHHHHH
Confidence            999999887554

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.89  E-value=2e-22  Score=166.26  Aligned_cols=149  Identities=15%  Similarity=0.164  Sum_probs=120.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeC
Q psy125           12 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV   91 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~   91 (385)
                      |+++|++|||||||++++..+.+...+.++.|...    .....+.+.+.+||++|+..++.++..+++++|++++|+|+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            78999999999999999998888777888887643    23445678999999999999988999999999999999999


Q ss_pred             CChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHH------HHHHHHhcCCeEEEEcCCC------CCChHHH
Q psy125           92 TSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK------SIVFHRKKNLQYYDISAKS------NYNFEKP  159 (385)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~------~~~~~~~~~~~~~~~Sa~~------~~gi~~l  159 (385)
                      +++.++.....|+..+.....+.|+++|+||.|+........      ...+....+..++++||++      +.|++++
T Consensus        78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~  157 (164)
T cd04162          78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL  157 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence            999988888788877765447899999999999865433222      2233344566788888887      8999998


Q ss_pred             HHHHH
Q psy125          160 FLWLA  164 (385)
Q Consensus       160 ~~~i~  164 (385)
                      |..++
T Consensus       158 ~~~~~  162 (164)
T cd04162         158 LSQLI  162 (164)
T ss_pred             HHHHh
Confidence            88765

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0081|consensus

Probab=99.89  E-value=1.4e-23  Score=160.80  Aligned_cols=162  Identities=33%  Similarity=0.620  Sum_probs=139.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC---------CeeEEEEEEeCCCccccccchhhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN---------RGAIRFNVWDTAGQEKFGGLRDGY   78 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~---------~~~~~~~i~Dt~g~~~~~~~~~~~   78 (385)
                      .-+|...+|++||||||++.++..+.+......+.|+++..+...+.         ...+.+.+|||.|+++++++.-.+
T Consensus         8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF   87 (219)
T KOG0081|consen    8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF   87 (219)
T ss_pred             HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence            34688899999999999999999999999999999988766543332         235889999999999999999999


Q ss_pred             hccCcEEEEEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCC
Q psy125           79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNY  154 (385)
Q Consensus        79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~  154 (385)
                      ++.+-+++++||+++..+|-++..|+..+.-  .+++..+++++||+|+.+.+.  ..+...++...+.++|++||-++.
T Consensus        88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~  167 (219)
T KOG0081|consen   88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT  167 (219)
T ss_pred             HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence            9999999999999999999999999988765  557888999999999988766  445677899999999999999999


Q ss_pred             ChHHHHHHHHHHHhc
Q psy125          155 NFEKPFLWLARKLIG  169 (385)
Q Consensus       155 gi~~l~~~i~~~l~~  169 (385)
                      ++++..+.+...+++
T Consensus       168 Nv~kave~LldlvM~  182 (219)
T KOG0081|consen  168 NVEKAVELLLDLVMK  182 (219)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999888777776544

>PTZ00369 Ras-like protein; Provisional

Probab=99.89  E-value=1.2e-22  Score=171.75  Aligned_cols=117  Identities=27%  Similarity=0.494  Sum_probs=107.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+|++++|.+|||||+|+++|..+.|...+.+|.+.++ .+.+.+++..+.+.||||||+++|..++..|+++++++|+
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iil   82 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLC   82 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEE
Confidence            468999999999999999999999999889999988666 4566778888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.||++                                                 |++|||++|.||+++|.+|
T Consensus        83 v~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l  162 (189)
T PTZ00369         83 VYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYEL  162 (189)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence            999999999888                                                 8999999999999999999


Q ss_pred             HHHHhcC
Q psy125          334 ARKLIGD  340 (385)
Q Consensus       334 ~~~i~~~  340 (385)
                      ++.+...
T Consensus       163 ~~~l~~~  169 (189)
T PTZ00369        163 VREIRKY  169 (189)
T ss_pred             HHHHHHH
Confidence            9988653

>cd01893 Miro1 Miro1 subfamily

Probab=99.89  E-value=1.6e-21  Score=161.52  Aligned_cols=158  Identities=18%  Similarity=0.325  Sum_probs=119.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|.+|||||||++++..+.+...+..+... . ..........+.+.+|||+|...+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPE-I-TIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccc-e-EeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            48999999999999999999988876554332221 1 222344567789999999999877666677789999999999


Q ss_pred             eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhhh----HHHHHHHH-hcC-CeEEEEcCCCCCChHHHHHH
Q psy125           90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHR-KKN-LQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~----~~~~~~~~-~~~-~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      |++++.+++.+. .|+..+.....+.|+++|+||+|+.+....    .....+.. ... ..++++||+++.|+++++..
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  158 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY  158 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence            999999998864 577777655568999999999998654331    22222222 222 37999999999999999999


Q ss_pred             HHHHHhc
Q psy125          163 LARKLIG  169 (385)
Q Consensus       163 i~~~l~~  169 (385)
                      +.+.+.+
T Consensus       159 ~~~~~~~  165 (166)
T cd01893         159 AQKAVLH  165 (166)
T ss_pred             HHHHhcC
Confidence            9988754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.89  E-value=1.5e-22  Score=167.75  Aligned_cols=116  Identities=31%  Similarity=0.647  Sum_probs=109.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|++++..+.|...+.++.+.++....+..++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v   82 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEE
Confidence            48999999999999999999999999999999999988888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||++                                                |+||||++|.||+++|.++++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  162 (167)
T cd01867          83 YDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAK  162 (167)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999988                                                799999999999999999999


Q ss_pred             HHhc
Q psy125          336 KLIG  339 (385)
Q Consensus       336 ~i~~  339 (385)
                      ++..
T Consensus       163 ~~~~  166 (167)
T cd01867         163 DIKK  166 (167)
T ss_pred             HHHh
Confidence            9865

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04136 Rap_like Rap-like subfamily

Probab=99.88  E-value=1.3e-22  Score=167.41  Aligned_cols=112  Identities=30%  Similarity=0.579  Sum_probs=102.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+|++++..+.|...+.+|.+ +...+.+.+++..+.+.||||||+++|..+++.|++++|++++||
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY   80 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999999888888886 444566777888889999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          305 DVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |++++.||++                                                 |++|||++|.||+++|.++++
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd04136          81 SITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVR  160 (163)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            9999999987                                                 799999999999999999998


Q ss_pred             HH
Q psy125          336 KL  337 (385)
Q Consensus       336 ~i  337 (385)
                      .+
T Consensus       161 ~~  162 (163)
T cd04136         161 QI  162 (163)
T ss_pred             hc
Confidence            65

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd00157 Rho Rho (Ras homology) family

Probab=99.88  E-value=2.5e-21  Score=161.14  Aligned_cols=155  Identities=30%  Similarity=0.519  Sum_probs=122.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++|+++.+...+.++..... ..........+.+.+||+||++.+......++..+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999998887666656554333 333455677889999999999987777778889999999999


Q ss_pred             eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh-------------hHHHHHHHHhcCC-eEEEEcCCCCC
Q psy125           90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV-------------KAKSIVFHRKKNL-QYYDISAKSNY  154 (385)
Q Consensus        90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-------------~~~~~~~~~~~~~-~~~~~Sa~~~~  154 (385)
                      |++++.++.... .|+..+.....+.|+++|+||+|+.....             ......+....+. .++++|++++.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            999988887654 47776666556899999999999865432             2233445555555 89999999999


Q ss_pred             ChHHHHHHHHH
Q psy125          155 NFEKPFLWLAR  165 (385)
Q Consensus       155 gi~~l~~~i~~  165 (385)
                      |+++++..|++
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04129 Rho2 Rho2 subfamily

Probab=99.88  E-value=3.4e-21  Score=162.56  Aligned_cols=159  Identities=27%  Similarity=0.455  Sum_probs=125.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      .||+|+|++|+|||||+++|..+.+...+.++.+..+.. ........+.+.+||++|++.+.......+.+++++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYVT-DCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE-EEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            599999999999999999988787776666655443322 3445666788999999999877766666778999999999


Q ss_pred             eCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh----------h--hHHHHHHHHhcC-CeEEEEcCCCCCC
Q psy125           90 DVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK----------V--KAKSIVFHRKKN-LQYYDISAKSNYN  155 (385)
Q Consensus        90 d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~----------~--~~~~~~~~~~~~-~~~~~~Sa~~~~g  155 (385)
                      ++++..+++.+. .|+..+.....+.|+++|+||+|+....          .  ......+....+ ..++++||+++.|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  160 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG  160 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence            999999998876 5888887766789999999999984311          0  223444555555 4899999999999


Q ss_pred             hHHHHHHHHHHHhc
Q psy125          156 FEKPFLWLARKLIG  169 (385)
Q Consensus       156 i~~l~~~i~~~l~~  169 (385)
                      ++++|..+++.+..
T Consensus       161 v~~~f~~l~~~~~~  174 (187)
T cd04129         161 VDDVFEAATRAALL  174 (187)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987754

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.88  E-value=2.6e-22  Score=166.57  Aligned_cols=114  Identities=34%  Similarity=0.559  Sum_probs=107.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      ||+++|.+|||||+|+++|+.+.|...|.+|++.++..+.+.+++..+.+.||||||+++|..++..+++++|++|+|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999999999999999888888888888999999999999999999999999999999999


Q ss_pred             CCChhhhhh---------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          306 VTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       306 ~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      ++++.||+.                                                   |++|||++|.||+++|..|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999977                                                   79999999999999999999


Q ss_pred             HHHhc
Q psy125          335 RKLIG  339 (385)
Q Consensus       335 ~~i~~  339 (385)
                      +.+.+
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            97754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd01865 Rab3 Rab3 subfamily

Probab=99.88  E-value=3.1e-22  Score=165.62  Aligned_cols=115  Identities=29%  Similarity=0.606  Sum_probs=107.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|.+|||||+|++++..++|...+.++.|.++....+..++..+.+.+|||+|++++..++..++++++++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999998899999998887777777777889999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |++++.||+.                                                |++|||++|.||+++|+++++.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999987                                                8999999999999999999997


Q ss_pred             Hhc
Q psy125          337 LIG  339 (385)
Q Consensus       337 i~~  339 (385)
                      +..
T Consensus       162 ~~~  164 (165)
T cd01865         162 ICD  164 (165)
T ss_pred             HHh
Confidence            653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04109 Rab28 Rab28 subfamily

Probab=99.88  E-value=2.6e-22  Score=173.09  Aligned_cols=116  Identities=30%  Similarity=0.502  Sum_probs=108.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC-eeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      +|++++|.+|||||+|+++|..+.|...+.+|+|.++..+.+.+++ ..+.+.||||+|++.+..++..|++++|++|+|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999999999999999998888888764 578999999999999999999999999999999


Q ss_pred             EeCCChhhhhh---------------------------------------------------hheeccccCCCchHHHHH
Q psy125          304 FDVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       304 ~d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      ||++++.||++                                                   +++|||++|.||+++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999987                                                   799999999999999999


Q ss_pred             HHHHHhcC
Q psy125          333 LARKLIGD  340 (385)
Q Consensus       333 l~~~i~~~  340 (385)
                      |++.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99998864

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04157 Arl6 Arl6 subfamily

Probab=99.88  E-value=7.4e-22  Score=162.79  Aligned_cols=151  Identities=25%  Similarity=0.414  Sum_probs=115.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC-CCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~-~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +|+++|++|||||||+++|.++. +...+.++.|.+....    ..+.+.+.+|||||...+...+..++.++|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            58999999999999999988765 3556778887654332    235788999999999988888889999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHh----cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRV----CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~----~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      |++++.++.....|+..+...    ..+.|+++++||+|+.......+......     .....++++||+++.|+++++
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~  156 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV  156 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence            999998887776777666542    14789999999999865432222221111     112358899999999999999


Q ss_pred             HHHHH
Q psy125          161 LWLAR  165 (385)
Q Consensus       161 ~~i~~  165 (385)
                      .+|+.
T Consensus       157 ~~l~~  161 (162)
T cd04157         157 QWLQA  161 (162)
T ss_pred             HHHhc
Confidence            98864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PRK00089 era GTPase Era; Reviewed

Probab=99.88  E-value=4.4e-21  Score=173.38  Aligned_cols=201  Identities=16%  Similarity=0.111  Sum_probs=147.1

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--------chh
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRD   76 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------~~~   76 (385)
                      |.++...|+|+|++|||||||+|+|++.. ...+++.+++|+.........+...+.++||||......        ...
T Consensus         1 ~~~~~g~V~iiG~pn~GKSTLin~L~g~~-~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~   79 (292)
T PRK00089          1 MGFKSGFVAIVGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAW   79 (292)
T ss_pred             CCceeEEEEEECCCCCCHHHHHHHHhCCc-eeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHH
Confidence            34577889999999999999999976644 344556666777665544444558899999999754322        223


Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc-chhhhH-HHHHHHHh-cCCeEEEEcCCCC
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK-DRKVKA-KSIVFHRK-KNLQYYDISAKSN  153 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~-~~~~~~-~~~~~~~~-~~~~~~~~Sa~~~  153 (385)
                      ..+.++|++++|+|+++...  ....++..... ..+.|+++|+||+|+. ...... ....+... ....++++||+++
T Consensus        80 ~~~~~~D~il~vvd~~~~~~--~~~~~i~~~l~-~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~  156 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIG--PGDEFILEKLK-KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKG  156 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCC--hhHHHHHHHHh-hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence            35678999999999988322  22233322222 1368999999999997 323222 22223332 2458999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhh
Q psy125          154 YNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMA  217 (385)
Q Consensus       154 ~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~  217 (385)
                      .|+++++..|...+...        ++++++...+|...+..+.+.+++.+...+.++.||...
T Consensus       157 ~gv~~L~~~L~~~l~~~--------~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~  212 (292)
T PRK00089        157 DNVDELLDVIAKYLPEG--------PPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVA  212 (292)
T ss_pred             CCHHHHHHHHHHhCCCC--------CCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEE
Confidence            99999999999987544        568888999999999999999999999999999998644

>cd04176 Rap2 Rap2 subgroup

Probab=99.88  E-value=2.4e-22  Score=165.88  Aligned_cols=113  Identities=27%  Similarity=0.536  Sum_probs=103.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      ++|++++|.+|||||+++++++.+.+...+.+|.+ ++....+.+++..+.+.||||||+++|..++..|++++|++|+|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            37999999999999999999999999988888875 55566777788888999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      ||++++.||++                                                 |++|||++|.||+++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999987                                                 78999999999999999999


Q ss_pred             HHH
Q psy125          335 RKL  337 (385)
Q Consensus       335 ~~i  337 (385)
                      +++
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            865

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04175 Rap1 Rap1 subgroup

Probab=99.88  E-value=2.7e-22  Score=165.76  Aligned_cols=114  Identities=28%  Similarity=0.515  Sum_probs=104.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      ++||+++|.+|||||+++++++.+.|...+.+|++..+ ...+.+++..+.+.||||||+++|..+++.+++++|++|+|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            37999999999999999999999999888899987655 45667788888999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      ||++++.||++                                                 |++|||++|.||+++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999987                                                 89999999999999999999


Q ss_pred             HHHh
Q psy125          335 RKLI  338 (385)
Q Consensus       335 ~~i~  338 (385)
                      +++.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04110 Rab35 Rab35 subfamily

Probab=99.88  E-value=3.6e-22  Score=170.16  Aligned_cols=118  Identities=31%  Similarity=0.606  Sum_probs=110.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|++|||||+|+++|..+.|...+.+|+|.++....+.+++..+.+.||||||++++..++..++++++++|+|
T Consensus         6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv   85 (199)
T cd04110           6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   85 (199)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEE
Confidence            58999999999999999999999999888999999888888888888888999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          304 FDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       304 ~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      ||++++.||++                                               |++|||++|.||+++|.+|++.
T Consensus        86 ~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~  165 (199)
T cd04110          86 YDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITEL  165 (199)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHH
Confidence            99999999987                                               8999999999999999999999


Q ss_pred             HhcCC
Q psy125          337 LIGDP  341 (385)
Q Consensus       337 i~~~~  341 (385)
                      ++...
T Consensus       166 ~~~~~  170 (199)
T cd04110         166 VLRAK  170 (199)
T ss_pred             HHHhh
Confidence            98653

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.88  E-value=3.8e-22  Score=165.26  Aligned_cols=116  Identities=33%  Similarity=0.661  Sum_probs=108.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+|++++|.+|||||++++++..+.|...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++|+|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            37999999999999999999999999888899998888888888888888999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||++                                                |+++||++|.||+++|.+|++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999977                                                899999999999999999999


Q ss_pred             HHhc
Q psy125          336 KLIG  339 (385)
Q Consensus       336 ~i~~  339 (385)
                      ++.+
T Consensus       162 ~~~~  165 (166)
T cd01869         162 EIKK  165 (166)
T ss_pred             HHHh
Confidence            8853

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>KOG0395|consensus

Probab=99.88  E-value=2.1e-21  Score=162.88  Aligned_cols=161  Identities=27%  Similarity=0.521  Sum_probs=141.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+++|.+|||||+|..+++.+.|...+.|+.+ +..++...++++.+.+.|+||+|++.+..+...++..+|++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            568999999999999999999999999999999999 5556667778899999999999999998999999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      ||+++++.+|+.+..++..+.+  .....|+++|+||+|+...+.  ..+...++......++++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            9999999999999988888855  234679999999999976333  455667788888899999999999999999999


Q ss_pred             HHHHhc
Q psy125          164 ARKLIG  169 (385)
Q Consensus       164 ~~~l~~  169 (385)
                      .+.+-.
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            997754

>cd04127 Rab27A Rab27a subfamily

Probab=99.88  E-value=3.4e-22  Score=167.89  Aligned_cols=116  Identities=29%  Similarity=0.564  Sum_probs=106.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC----------CeeEEEEEeeCCCccccCcccccc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN----------RGAIRFNVWDTAGQEKFGGLRDGY  293 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~i~Dt~G~~~~~~~~~~~  293 (385)
                      .+|++++|.+|||||+|++++..+.|...+.+|++.++....+...          +..+.+.||||||+++|..++..+
T Consensus         4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~   83 (180)
T cd04127           4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAF   83 (180)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHH
Confidence            4899999999999999999999999999999999988877666554          356889999999999999999999


Q ss_pred             cccCcEEEEEEeCCChhhhhh-------------------------------------------------hheeccccCC
Q psy125          294 YIQGQCAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSNY  324 (385)
Q Consensus       294 ~~~~~~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~  324 (385)
                      ++++|++|+|||++++.||++                                                 |+||||++|.
T Consensus        84 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~  163 (180)
T cd04127          84 FRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGT  163 (180)
T ss_pred             hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCC
Confidence            999999999999999999987                                                 7999999999


Q ss_pred             CchHHHHHHHHHHhc
Q psy125          325 NFEKPFLWLARKLIG  339 (385)
Q Consensus       325 ~v~~~f~~l~~~i~~  339 (385)
                      ||+++|.+|++.+.+
T Consensus       164 ~v~~l~~~l~~~~~~  178 (180)
T cd04127         164 NVEKAVERLLDLVMK  178 (180)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998864

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.88  E-value=4.7e-21  Score=163.20  Aligned_cols=157  Identities=24%  Similarity=0.388  Sum_probs=124.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      ||+++|++|||||||+++++.+.+...+.++.+. ............+.+.+||++|...+..++..++.++|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEE-MHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhh-heeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            6899999999999999999998887766666543 333445556667899999999998888888888999999999999


Q ss_pred             CCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcch-hh--hHHHHHHH-HhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           91 VTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDR-KV--KAKSIVFH-RKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~-~~--~~~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      ++++.+++.+..|+..+....  .+.|+++++||.|+... ..  ........ ......++++||+++.|+++++.+|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            999999998888887776643  47899999999998642 21  11122222 23346789999999999999999999


Q ss_pred             HHHh
Q psy125          165 RKLI  168 (385)
Q Consensus       165 ~~l~  168 (385)
                      +.+.
T Consensus       160 ~~~~  163 (198)
T cd04147         160 RQAN  163 (198)
T ss_pred             HHhh
Confidence            9764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=99.88  E-value=3.9e-22  Score=171.14  Aligned_cols=117  Identities=29%  Similarity=0.611  Sum_probs=108.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEe-CCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      .+||+++|.+|||||+|+++++.+.+...+.+|+|.++..+.+.+ ++..+.+.+|||+|++++..++..|++++|++|+
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil   81 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL   81 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence            379999999999999999999999998888999998888887776 4567899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.||++                                                 |+||||++|.||+++|.+|
T Consensus        82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l  161 (211)
T cd04111          82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL  161 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999988                                                 8999999999999999999


Q ss_pred             HHHHhcC
Q psy125          334 ARKLIGD  340 (385)
Q Consensus       334 ~~~i~~~  340 (385)
                      ++.+.+.
T Consensus       162 ~~~~~~~  168 (211)
T cd04111         162 TQEIYER  168 (211)
T ss_pred             HHHHHHH
Confidence            9998776

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04124 RabL2 RabL2 subfamily

Probab=99.88  E-value=7.9e-22  Score=162.39  Aligned_cols=116  Identities=33%  Similarity=0.536  Sum_probs=107.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+|+++++.+.|...+.++.+.+.....+.+++..+.+.+|||+|+++|..++..|++++|++|+||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999998888888888887777788888899999999999999999999999999999999


Q ss_pred             eCCChhhhhh--------------------------------------------hheeccccCCCchHHHHHHHHHHhcC
Q psy125          305 DVTSRITYKN--------------------------------------------YYDISAKSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       305 d~~~~~s~~~--------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~~  340 (385)
                      |++++.+|++                                            +++|||++|.||+++|..+++.+++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence            9999999876                                            78999999999999999999988754

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>KOG0083|consensus

Probab=99.88  E-value=4.2e-23  Score=153.40  Aligned_cols=156  Identities=25%  Similarity=0.592  Sum_probs=136.4

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCC-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCC
Q psy125           14 LVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT   92 (385)
Q Consensus        14 lvG~~g~GKSTLin~ll~~~~~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~   92 (385)
                      ++|++++|||+|+-++-.+.+. ....++.|+++..+.+..+...+++.+|||.|++++++....|++.+|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            7899999999999876555543 345688999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125           93 SRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus        93 ~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      +..+|++...|+.++.... ....+++++||+|+..++.  ..+...++...+++++++|+++|.+++..|..|++.+.+
T Consensus        82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence            9999999999999987743 4567789999999976544  456677889999999999999999999999999987754

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.88  E-value=3.1e-21  Score=163.14  Aligned_cols=144  Identities=21%  Similarity=0.355  Sum_probs=118.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-----CeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-----RGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-----~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      +||+++|.+|||||||+++++.+.+...+.++.|.+.........     ...+.+.+|||+|++.+..++..+++++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888999977766655553     457899999999999999899999999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHh--------------------cCCCCEEEEEeCCCCcchhh------hHHHHHHH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRV--------------------CENIPIVLCGNKVDIKDRKV------KAKSIVFH  138 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~--------------------~~~~~~ilv~nK~Dl~~~~~------~~~~~~~~  138 (385)
                      +|+|||++++.+++++..|+..+...                    ..+.|+++|+||.|+..++.      ......++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            99999999999999999999888652                    13689999999999865432      12233456


Q ss_pred             HhcCCeEEEEcCCCC
Q psy125          139 RKKNLQYYDISAKSN  153 (385)
Q Consensus       139 ~~~~~~~~~~Sa~~~  153 (385)
                      .+.+.+.+..++.+.
T Consensus       161 ~~~~~~~i~~~c~~~  175 (202)
T cd04102         161 EQGNAEEINLNCTNG  175 (202)
T ss_pred             HhcCCceEEEecCCc
Confidence            777888777776643

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.87  E-value=5.3e-22  Score=164.59  Aligned_cols=115  Identities=25%  Similarity=0.531  Sum_probs=107.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+++++++.+.|...+.++++.++..+.+.+++..+.+.+|||+|++++..+++.++++++++|+||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999999999999999988888888888999999999999999999999999999999999


Q ss_pred             eCCChhhhhh-----------------------------------------------------hheeccccCCCchHHHH
Q psy125          305 DVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       305 d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      |++++.||+.                                                     |++|||++|.||+++|.
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            9999988764                                                     89999999999999999


Q ss_pred             HHHHHHhc
Q psy125          332 WLARKLIG  339 (385)
Q Consensus       332 ~l~~~i~~  339 (385)
                      +|++.+.+
T Consensus       161 ~l~~~l~~  168 (168)
T cd04119         161 TLFSSIVD  168 (168)
T ss_pred             HHHHHHhC
Confidence            99998763

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd00876 Ras Ras family

Probab=99.87  E-value=4.5e-21  Score=157.66  Aligned_cols=155  Identities=30%  Similarity=0.571  Sum_probs=126.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      ||+++|++|||||||+++++.+.+.....++.+ .............+.+.+||+||...+......++..+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999988877777666666 4444455556667899999999998887888888999999999999


Q ss_pred             CCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           91 VTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      ++++.++..+..|...+.....  ..|+++++||+|+.....  ......+....+.+++++|++++.|+++++..|++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999888888877776544  799999999999875322  334445556666799999999999999999998865

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04125 RabA_like RabA-like subfamily

Probab=99.87  E-value=9.3e-22  Score=166.30  Aligned_cols=116  Identities=33%  Similarity=0.665  Sum_probs=108.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+|++++..+.|...+.++.|.++....+.+++..+.+.+|||+|++++..++..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            48999999999999999999999998889999998888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |++++.||++                                                |+|+||++|.||+++|.+|++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999987                                                8899999999999999999999


Q ss_pred             HhcC
Q psy125          337 LIGD  340 (385)
Q Consensus       337 i~~~  340 (385)
                      +...
T Consensus       161 ~~~~  164 (188)
T cd04125         161 IIKR  164 (188)
T ss_pred             HHHH
Confidence            9754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.87  E-value=6.7e-22  Score=162.97  Aligned_cols=112  Identities=29%  Similarity=0.529  Sum_probs=102.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+|+++++.+.|...+.+|.+..+ ...+.+++..+.+.+|||+|++++..++..|+++++++++||
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~   80 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVF   80 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEE
Confidence            6899999999999999999999999888999887554 555677888888999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |++++.+|++                                                |++|||++|.||+++|.++++.
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~  160 (162)
T cd04138          81 AINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVRE  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHH
Confidence            9999999887                                                8999999999999999999986


Q ss_pred             H
Q psy125          337 L  337 (385)
Q Consensus       337 i  337 (385)
                      +
T Consensus       161 ~  161 (162)
T cd04138         161 I  161 (162)
T ss_pred             h
Confidence            5

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04116 Rab9 Rab9 subfamily

Probab=99.87  E-value=8e-22  Score=163.97  Aligned_cols=115  Identities=32%  Similarity=0.658  Sum_probs=107.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+|++++|.+|||||+|+++++.+.|...+.+++|.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   83 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL   83 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence            35899999999999999999999999988888999988888888888899999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||++++.||+.                                                    |+||||++|.||.++|
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~  163 (170)
T cd04116          84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAF  163 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHH
Confidence            999999999886                                                    8999999999999999


Q ss_pred             HHHHHHH
Q psy125          331 LWLARKL  337 (385)
Q Consensus       331 ~~l~~~i  337 (385)
                      .++++++
T Consensus       164 ~~~~~~~  170 (170)
T cd04116         164 EEAVRRV  170 (170)
T ss_pred             HHHHhhC
Confidence            9999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.87  E-value=4.4e-21  Score=159.99  Aligned_cols=153  Identities=24%  Similarity=0.352  Sum_probs=116.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+++|++|+|||||++++..+.+.. +.++.|.+....    ....+.+.+||+||+..+...+..++.++|++++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~----~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~   88 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEI----VYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVIL   88 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEE----EECCeEEEEEECCCCHHHHHHHHHHhhcCCEEEE
Confidence            46899999999999999999988777654 566777654322    2246889999999999888888888999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      |+|++++.++.....++..+...  ..+.|+++++||+|+.......+.....     .....+++++||+++.|+++++
T Consensus        89 V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~  168 (174)
T cd04153          89 VIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGL  168 (174)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHH
Confidence            99999998887666666655432  2468999999999986532222221111     1223468999999999999999


Q ss_pred             HHHHH
Q psy125          161 LWLAR  165 (385)
Q Consensus       161 ~~i~~  165 (385)
                      .+|++
T Consensus       169 ~~l~~  173 (174)
T cd04153         169 DWIAS  173 (174)
T ss_pred             HHHhc
Confidence            98864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.87  E-value=7.9e-22  Score=162.65  Aligned_cols=113  Identities=38%  Similarity=0.752  Sum_probs=109.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      ||+++|+.+||||+|+++|..+.|...+.+|.|.+...+.+..++..+.+.|||++|+++|..+...+++++|++|+|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125          306 VTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARKL  337 (385)
Q Consensus       306 ~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i  337 (385)
                      ++++.||++                                                |+||||+++.||.++|..++++|
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            999999999                                                99999999999999999999988


Q ss_pred             h
Q psy125          338 I  338 (385)
Q Consensus       338 ~  338 (385)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            5

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04144 Ras2 Ras2 subfamily

Probab=99.87  E-value=6.8e-22  Score=167.27  Aligned_cols=117  Identities=32%  Similarity=0.489  Sum_probs=105.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      ||+++|.+|||||+|+++|..+.|...+.+|.+..+ ...+.+++..+.+.||||||+++|..++..|++++|++|+|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            589999999999999999999999888889987554 3455677888889999999999999999999999999999999


Q ss_pred             CCChhhhhh---------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          306 VTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       306 ~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      ++++.||++                                                   |+||||++|.||+++|.+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999987                                                   89999999999999999999


Q ss_pred             HHHhcCCCc
Q psy125          335 RKLIGDPNL  343 (385)
Q Consensus       335 ~~i~~~~~~  343 (385)
                      +.+......
T Consensus       160 ~~l~~~~~~  168 (190)
T cd04144         160 RALRQQRQG  168 (190)
T ss_pred             HHHHHhhcc
Confidence            988755444

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>KOG0395|consensus

Probab=99.87  E-value=5.5e-22  Score=166.43  Aligned_cols=117  Identities=30%  Similarity=0.550  Sum_probs=111.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+|++++|.+|||||+++.+|+.+.|...|.||++ +.+.+.+.+++..+.+.|+||+|+++|..+...|++++||+++|
T Consensus         3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV   81 (196)
T KOG0395|consen    3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV   81 (196)
T ss_pred             ceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence            57999999999999999999999999999999997 77788888999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |+++|+.||+.                                                 |+|||||.+.||+++|..|+
T Consensus        82 ysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L~  161 (196)
T KOG0395|consen   82 YSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYELV  161 (196)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHHH
Confidence            99999999999                                                 89999999999999999999


Q ss_pred             HHHhcCC
Q psy125          335 RKLIGDP  341 (385)
Q Consensus       335 ~~i~~~~  341 (385)
                      +.+....
T Consensus       162 r~~~~~~  168 (196)
T KOG0395|consen  162 REIRLPR  168 (196)
T ss_pred             HHHHhhh
Confidence            9987743

>cd00879 Sar1 Sar1 subfamily

Probab=99.87  E-value=5.1e-21  Score=162.15  Aligned_cols=155  Identities=19%  Similarity=0.314  Sum_probs=117.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||++++.++.+ ..+.++.+.+...    +..+.+.+.+||+||+..+...+..+++++++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~~~~----i~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPTSEE----LTIGNIKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcceEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            4578999999999999999999877665 3455666554322    2224578999999999888777888899999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh----------------cCCeEEEE
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK----------------KNLQYYDI  148 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~----------------~~~~~~~~  148 (385)
                      +|+|+++..++.....++..+.+.  ..+.|+++++||+|+.......+...+...                ....++++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC  171 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence            999999988887766777666542  246899999999998643233333333321                22368999


Q ss_pred             cCCCCCChHHHHHHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARK  166 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~  166 (385)
                      ||+++.|+++.+.+|++.
T Consensus       172 Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         172 SVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EecCCCChHHHHHHHHhh
Confidence            999999999999999764

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.87  E-value=1.6e-20  Score=157.72  Aligned_cols=160  Identities=24%  Similarity=0.382  Sum_probs=127.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      .||+|+|++|||||||+++++.+.+...+.++.+.... .........+.+.+|||||+..+...+..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFS-KIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEE-EEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            58999999999999999999988776666666554332 33444556788899999999888878888899999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      |+++..+++.+..|+..+.+..  .+.|+++++||+|+.....  ......+......+++++|++++.|+.+++.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999988888877776632  4679999999999864322  22334455555678999999999999999999998


Q ss_pred             HHhcC
Q psy125          166 KLIGD  170 (385)
Q Consensus       166 ~l~~~  170 (385)
                      .+...
T Consensus       161 ~~~~~  165 (180)
T cd04137         161 EIEKV  165 (180)
T ss_pred             HHHHh
Confidence            87543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PLN03110 Rab GTPase; Provisional

Probab=99.87  E-value=1.6e-21  Score=168.09  Aligned_cols=119  Identities=31%  Similarity=0.542  Sum_probs=111.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|++|||||+|+++|..+.+...+.+|+|.++....+.+++..+.+.||||+|+++|..++..++++++++|+
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~il   90 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALL   90 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEE
Confidence            35899999999999999999999999988889999999988888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.||++                                                |+||||++|.||+++|.+|+
T Consensus        91 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~  170 (216)
T PLN03110         91 VYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTIL  170 (216)
T ss_pred             EEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999977                                                89999999999999999999


Q ss_pred             HHHhcCC
Q psy125          335 RKLIGDP  341 (385)
Q Consensus       335 ~~i~~~~  341 (385)
                      +.+.+..
T Consensus       171 ~~i~~~~  177 (216)
T PLN03110        171 LEIYHII  177 (216)
T ss_pred             HHHHHHh
Confidence            9997743

>KOG0393|consensus

Probab=99.86  E-value=3.5e-22  Score=163.36  Aligned_cols=118  Identities=31%  Similarity=0.494  Sum_probs=111.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      .+|++++|++++|||+++..|..+.|++.|.||+. +.+...+.++ ++.+.+.+|||+||+.|..+++..|+++|+||+
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~   82 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLL   82 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEEE
Confidence            58999999999999999999999999999999995 6677778885 999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125          303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK  321 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak  321 (385)
                      +|++.++.||++                                                             |+||||+
T Consensus        83 cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa~  162 (198)
T KOG0393|consen   83 CFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSAL  162 (198)
T ss_pred             EEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehhh
Confidence            999999999998                                                             9999999


Q ss_pred             cCCCchHHHHHHHHHHhcCCC
Q psy125          322 SNYNFEKPFLWLARKLIGDPN  342 (385)
Q Consensus       322 ~~~~v~~~f~~l~~~i~~~~~  342 (385)
                      +..||.++|+..++..+..++
T Consensus       163 tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  163 TQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhCCcHHHHHHHHHHHhcccc
Confidence            999999999999999988765

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.86  E-value=1.7e-21  Score=164.58  Aligned_cols=116  Identities=31%  Similarity=0.432  Sum_probs=104.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      +||+++|.+|||||+++++++.+.|...+.++++.++... +... +..+.+.||||||+++|..+++.+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            4899999999999999999999999999999987766443 4444 6778899999999999999999999999999999


Q ss_pred             EeCCChhhhhh-----------------------------------------------------hheeccccCCCchHHH
Q psy125          304 FDVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       304 ~d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      ||++++.||++                                                     |+||||++|.||+++|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  159 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF  159 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence            99999999987                                                     7999999999999999


Q ss_pred             HHHHHHHhcCC
Q psy125          331 LWLARKLIGDP  341 (385)
Q Consensus       331 ~~l~~~i~~~~  341 (385)
                      ..+++.+....
T Consensus       160 ~~l~~~~~~~~  170 (187)
T cd04132         160 DTAIEEALKKE  170 (187)
T ss_pred             HHHHHHHHhhh
Confidence            99999987653

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.86  E-value=2.1e-21  Score=158.88  Aligned_cols=106  Identities=21%  Similarity=0.306  Sum_probs=93.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|++|||||+++.+|+.+.|...+.++. ..+ ...+.+++..+.+.||||+|++.     ..|++++|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~-~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEG-GRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCc-cce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            489999999999999999999999888776653 333 46677888888999999999975     35788999999999


Q ss_pred             eCCChhhhhh----------------------------------------------------hheeccccCCCchHHHHH
Q psy125          305 DVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       305 d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |++++.||++                                                    |+|||||+|.||+++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999                                                    899999999999999999


Q ss_pred             HHHHH
Q psy125          333 LARKL  337 (385)
Q Consensus       333 l~~~i  337 (385)
                      +++++
T Consensus       154 ~~~~~  158 (158)
T cd04103         154 AAQKI  158 (158)
T ss_pred             HHhhC
Confidence            99764

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01864 Rab19 Rab19 subfamily

Probab=99.86  E-value=1.7e-21  Score=161.13  Aligned_cols=114  Identities=35%  Similarity=0.650  Sum_probs=106.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+|++++|.+|+|||+|++++..+.|...+.++.+.++....+..++..+.+.||||||++++..++..+++++|++++|
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv   82 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIA   82 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999999988999998888888888888778899999999999999999999999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      ||++++.||+.                                                 ++||||++|.||+++|.+++
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~  162 (165)
T cd01864          83 YDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMA  162 (165)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHH
Confidence            99999999977                                                 79999999999999999999


Q ss_pred             HHH
Q psy125          335 RKL  337 (385)
Q Consensus       335 ~~i  337 (385)
                      +++
T Consensus       163 ~~l  165 (165)
T cd01864         163 TEL  165 (165)
T ss_pred             HhC
Confidence            863

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0393|consensus

Probab=99.86  E-value=2.5e-21  Score=158.31  Aligned_cols=164  Identities=29%  Similarity=0.518  Sum_probs=141.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEe-CCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~-~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      ...+|++|||+.++|||+|+-.+..+.|...+.|+...++... ..+ ++..+.+.+|||.|+++|..++...++++|++
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            3568999999999999999999999999999999988555444 555 58899999999999999999888899999999


Q ss_pred             EEEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcC-CeEEEEc
Q psy125           86 IIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKN-LQYYDIS  149 (385)
Q Consensus        86 llV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~S  149 (385)
                      |++|++.++.+++++. .|+.++.+++++.|+++|++|.||.++..              ..+...++...+ ..++++|
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            9999999999999865 69999999999999999999999974321              234455666666 5899999


Q ss_pred             CCCCCChHHHHHHHHHHHhcCC
Q psy125          150 AKSNYNFEKPFLWLARKLIGDP  171 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~  171 (385)
                      |++..|+.+.|...+++....+
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~  182 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPP  182 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhccc
Confidence            9999999999999999886654

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.86  E-value=2.7e-21  Score=160.78  Aligned_cols=114  Identities=33%  Similarity=0.612  Sum_probs=106.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC-cccccccccCcEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-GLRDGYYIQGQCAII  302 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~~~~~~~~~il  302 (385)
                      .+||+++|++|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||+|++++. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            4799999999999999999999999998899999988888888888888999999999999887 578889999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheecccc---CCCchHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKS---NYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~---~~~v~~~f  330 (385)
                      |||++++.||++                                                 |+||||++   +.||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999987                                                 89999999   89999999


Q ss_pred             HHHHHHH
Q psy125          331 LWLARKL  337 (385)
Q Consensus       331 ~~l~~~i  337 (385)
                      ..+++++
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9999876

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd01866 Rab2 Rab2 subfamily

Probab=99.86  E-value=2.7e-21  Score=160.37  Aligned_cols=116  Identities=30%  Similarity=0.586  Sum_probs=108.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+++++.+.+...+.++.|.++....+..++....+.||||+|++++..+...+++++|++|+|
T Consensus         4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v   83 (168)
T cd01866           4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   83 (168)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999999888899999998888888888888999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||++                                                |+|+||++|.||+++|.++++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~  163 (168)
T cd01866          84 YDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAK  163 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999987                                                899999999999999999999


Q ss_pred             HHhc
Q psy125          336 KLIG  339 (385)
Q Consensus       336 ~i~~  339 (385)
                      .+.+
T Consensus       164 ~~~~  167 (168)
T cd01866         164 EIYE  167 (168)
T ss_pred             HHHh
Confidence            8764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04140 ARHI_like ARHI subfamily

Probab=99.86  E-value=2.2e-21  Score=160.48  Aligned_cols=110  Identities=26%  Similarity=0.503  Sum_probs=99.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+++++++.+.|...+.++.+.++ .+.+..+...+.+.+|||+|+++|..++..++++++++|+||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            6899999999999999999999999888889887555 445566777889999999999999999999999999999999


Q ss_pred             eCCChhhhhh---------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          305 DVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       305 d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |++++.||++                                                   |+||||++|.||+++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999976                                                   8999999999999999999


Q ss_pred             HH
Q psy125          334 AR  335 (385)
Q Consensus       334 ~~  335 (385)
                      +.
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            85

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.86  E-value=8.6e-21  Score=156.12  Aligned_cols=151  Identities=20%  Similarity=0.303  Sum_probs=113.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      ||+++|++|||||||+++|..+.+.. ..++.+.+.....  . .+.+.+.+||++|+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~~--~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEMLQ--L-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEEE--e-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999988877653 4566665443222  2 246889999999998888888888999999999999


Q ss_pred             CCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHH------HHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           91 VTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVF------HRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~------~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      ++++.++.....|+..+...  ..+.|+++++||+|+.......+....      ......+++++||+++.|+++++..
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~  156 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK  156 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence            99998887777777666542  257899999999998542222222111      1112346889999999999999998


Q ss_pred             HHH
Q psy125          163 LAR  165 (385)
Q Consensus       163 i~~  165 (385)
                      |++
T Consensus       157 i~~  159 (160)
T cd04156         157 LAS  159 (160)
T ss_pred             Hhc
Confidence            864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01892 Miro2 Miro2 subfamily

Probab=99.86  E-value=4.7e-21  Score=158.95  Aligned_cols=118  Identities=17%  Similarity=0.198  Sum_probs=108.5

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccc-cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA  300 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~  300 (385)
                      +..+|++++|.+|||||+++++|+.+.|. ..|.+|.+.++....+.+++..+.+.+||++|++.+..++..||+++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            45789999999999999999999999998 88999998888777778888888899999999999999999999999999


Q ss_pred             EEEEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHH
Q psy125          301 IIMFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       301 ilv~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |+|||++++.||++                                               ++++||++|.||+++|..+
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l  161 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKL  161 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHH
Confidence            99999999999876                                               5899999999999999999


Q ss_pred             HHHHhc
Q psy125          334 ARKLIG  339 (385)
Q Consensus       334 ~~~i~~  339 (385)
                      ++.+..
T Consensus       162 ~~~~~~  167 (169)
T cd01892         162 ATAAQY  167 (169)
T ss_pred             HHHhhC
Confidence            998753

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN03108 Rab family protein; Provisional

Probab=99.86  E-value=2.3e-21  Score=166.46  Aligned_cols=119  Identities=30%  Similarity=0.568  Sum_probs=110.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|++|||||+|++++..+.|...+.++++.++....+.+++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus         6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv   85 (210)
T PLN03108          6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLV   85 (210)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999989888999999998888888888888999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||+.                                                |+|+||++|.||+++|.++++
T Consensus        86 ~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~  165 (210)
T PLN03108         86 YDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAA  165 (210)
T ss_pred             EECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999987                                                899999999999999999999


Q ss_pred             HHhcCCC
Q psy125          336 KLIGDPN  342 (385)
Q Consensus       336 ~i~~~~~  342 (385)
                      .+.++.+
T Consensus       166 ~~~~~~~  172 (210)
T PLN03108        166 KIYKKIQ  172 (210)
T ss_pred             HHHHHhh
Confidence            9987543

>cd01868 Rab11_like Rab11-like

Probab=99.86  E-value=2.7e-21  Score=159.99  Aligned_cols=114  Identities=32%  Similarity=0.612  Sum_probs=107.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+|++++|.+|||||++++++..+.+...+.++.+.++....+..++..+.+.+|||||++++..++..++++++++|+|
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v   82 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLV   82 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEE
Confidence            37999999999999999999999999888899999888888888888888999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||++                                                |+||||++|.||+++|++++.
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  162 (165)
T cd01868          83 YDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLT  162 (165)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999987                                                899999999999999999998


Q ss_pred             HH
Q psy125          336 KL  337 (385)
Q Consensus       336 ~i  337 (385)
                      .+
T Consensus       163 ~i  164 (165)
T cd01868         163 EI  164 (165)
T ss_pred             Hh
Confidence            76

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04118 Rab24 Rab24 subfamily

Probab=99.86  E-value=5.6e-21  Score=162.30  Aligned_cols=118  Identities=25%  Similarity=0.511  Sum_probs=108.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCcccc-ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      +||+++|.+|||||+|+++|+.+.|.. .+.+|+|.++....+.+++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            489999999999999999999998875 6889999888888888898889999999999999999999999999999999


Q ss_pred             EeCCChhhhhh---------------------------------------------------hheeccccCCCchHHHHH
Q psy125          304 FDVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       304 ~d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      ||++++.||++                                                   |+++||++|.||+++|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  160 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK  160 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999965                                                   589999999999999999


Q ss_pred             HHHHHhcCCC
Q psy125          333 LARKLIGDPN  342 (385)
Q Consensus       333 l~~~i~~~~~  342 (385)
                      +++.+.+...
T Consensus       161 i~~~~~~~~~  170 (193)
T cd04118         161 VAEDFVSRAN  170 (193)
T ss_pred             HHHHHHHhcc
Confidence            9999977554

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.86  E-value=1.9e-20  Score=155.42  Aligned_cols=156  Identities=15%  Similarity=0.111  Sum_probs=110.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc---------hhhhhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL---------RDGYYI   80 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~---------~~~~~~   80 (385)
                      .+|+++|++|||||||+|+|++..+..  .+..+.|..........+.+.+.+|||||+......         ......
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEV--APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCcc--CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999988766532  233444555555555556789999999997421100         011112


Q ss_pred             cCcEEEEEEeCCChhhh--hcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125           81 QGQCAIIMFDVTSRITY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~--~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (385)
                      .+|++++|+|+++..++  .....|+..+.....+.|+++|+||+|+...........+......+++++||+++.|+++
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE  158 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence            36899999999987653  3444566666554458999999999998654433333444555567899999999999999


Q ss_pred             HHHHHHHHH
Q psy125          159 PFLWLARKL  167 (385)
Q Consensus       159 l~~~i~~~l  167 (385)
                      ++.++.+.+
T Consensus       159 l~~~l~~~~  167 (168)
T cd01897         159 VKNKACELL  167 (168)
T ss_pred             HHHHHHHHh
Confidence            999998875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>PLN03118 Rab family protein; Provisional

Probab=99.86  E-value=3.6e-21  Score=165.63  Aligned_cols=120  Identities=35%  Similarity=0.618  Sum_probs=109.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+|++++|.+|||||+|+++++.+.+ ..+.++.|.++....+.+++..+.+.||||||+++|..++..+++++|++|+
T Consensus        13 ~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vl   91 (211)
T PLN03118         13 LSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIIL   91 (211)
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            468999999999999999999988776 5678898888888888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHH
Q psy125          303 MFDVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       303 v~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |||++++.||++                                                  |+||||++|.||+++|.+
T Consensus        92 v~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~  171 (211)
T PLN03118         92 VYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEE  171 (211)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            999999999887                                                  799999999999999999


Q ss_pred             HHHHHhcCCCc
Q psy125          333 LARKLIGDPNL  343 (385)
Q Consensus       333 l~~~i~~~~~~  343 (385)
                      |++++...++.
T Consensus       172 l~~~~~~~~~~  182 (211)
T PLN03118        172 LALKIMEVPSL  182 (211)
T ss_pred             HHHHHHhhhhh
Confidence            99999876543

>cd04151 Arl1 Arl1 subfamily

Probab=99.86  E-value=1.2e-20  Score=154.82  Aligned_cols=150  Identities=21%  Similarity=0.328  Sum_probs=110.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      ||+++|++|||||||++++..+.+. ...++.+.+...    .+...+.+.+|||||+..+...+..++..++++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVET----VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEE----EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            6899999999999999997676654 345565554432    22356889999999999888888889999999999999


Q ss_pred             CCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHHHHHH
Q psy125           91 VTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      ++++.++.....++..+.+  ...+.|+++++||+|+.......+......     ....+++++||+++.|+++++.+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  155 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL  155 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence            9998777655555544433  224789999999999864332222221111     112469999999999999999988


Q ss_pred             HH
Q psy125          164 AR  165 (385)
Q Consensus       164 ~~  165 (385)
                      ++
T Consensus       156 ~~  157 (158)
T cd04151         156 VN  157 (158)
T ss_pred             hc
Confidence            65

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.86  E-value=2.7e-21  Score=159.41  Aligned_cols=112  Identities=33%  Similarity=0.674  Sum_probs=104.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC--CeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN--RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      +||+++|.+|+|||+|++++..+.|...+.++++.++....+.+.  +..+.+.||||||+++|..++..+++++|++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            489999999999999999999999999999999988877777776  778899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          303 MFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       303 v~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |||++++.||++                                               |+++||++|.|++++|.+|+.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999999987                                               899999999999999999986


Q ss_pred             H
Q psy125          336 K  336 (385)
Q Consensus       336 ~  336 (385)
                      +
T Consensus       161 ~  161 (162)
T cd04106         161 K  161 (162)
T ss_pred             h
Confidence            4

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04112 Rab26 Rab26 subfamily

Probab=99.86  E-value=3.8e-21  Score=162.83  Aligned_cols=118  Identities=31%  Similarity=0.660  Sum_probs=107.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCcccc-ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      +||+++|.+|||||+|++++..+.|.. .+.++.+.++....+.+++..+.+.||||||++++..++..+++++|++|+|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999999888864 6788888888777778888889999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||++                                                |+|+||++|.||+++|.+|++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999976                                                899999999999999999999


Q ss_pred             HHhcCCC
Q psy125          336 KLIGDPN  342 (385)
Q Consensus       336 ~i~~~~~  342 (385)
                      .+.....
T Consensus       161 ~~~~~~~  167 (191)
T cd04112         161 ELKHRKY  167 (191)
T ss_pred             HHHHhcc
Confidence            9987753

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=99.86  E-value=3.1e-21  Score=158.91  Aligned_cols=113  Identities=31%  Similarity=0.658  Sum_probs=106.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|.+|||||+|+++++.+.+...+.++.+.++....+.+++..+.+.+|||||+++|..++..+++++|++|+||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999999999999998888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |++++.+|++                                                |+++||++|.|++++|+++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            9999999987                                                8999999999999999999986


Q ss_pred             H
Q psy125          337 L  337 (385)
Q Consensus       337 i  337 (385)
                      +
T Consensus       161 ~  161 (161)
T cd04113         161 I  161 (161)
T ss_pred             C
Confidence            4

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.86  E-value=4.8e-21  Score=159.92  Aligned_cols=112  Identities=29%  Similarity=0.451  Sum_probs=101.9

Q ss_pred             EEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeC
Q psy125          227 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV  306 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~  306 (385)
                      |+++|.+|||||+|+++|+.+.|...+.++.+..+ ...+.+++..+.+.+|||||+++|..+++.+++++|++|+|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            58999999999999999999999988888886554 45567788888999999999999999999999999999999999


Q ss_pred             CChhhhhh-------------------------------------------------------------hheeccccCCC
Q psy125          307 TSRITYKN-------------------------------------------------------------YYDISAKSNYN  325 (385)
Q Consensus       307 ~~~~s~~~-------------------------------------------------------------~~e~Sak~~~~  325 (385)
                      +++.||++                                                             |+||||++|.|
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  159 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG  159 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            99999986                                                             78999999999


Q ss_pred             chHHHHHHHHHHhc
Q psy125          326 FEKPFLWLARKLIG  339 (385)
Q Consensus       326 v~~~f~~l~~~i~~  339 (385)
                      |+++|..+++.+++
T Consensus       160 v~~lf~~l~~~~~~  173 (174)
T smart00174      160 VREVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999998754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.86  E-value=8.3e-21  Score=157.37  Aligned_cols=151  Identities=24%  Similarity=0.406  Sum_probs=111.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC------CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEF------EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~------~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      +|+++|++|||||||++++.....      ...+.++.+......    ......+.+|||||+..+...+..++.++|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTI----EVGNARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEE----EECCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999765322      122334444433222    2246889999999999888888888999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh-------cCCeEEEEcCCCCCC
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK-------KNLQYYDISAKSNYN  155 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-------~~~~~~~~Sa~~~~g  155 (385)
                      +++|+|++++.++.....++..+.+.  ..+.|+++++||+|+.......+...+...       ...+++++||+++.|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  156 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG  156 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence            99999999988777766677666542  257899999999998654332333333222       234799999999999


Q ss_pred             hHHHHHHHHH
Q psy125          156 FEKPFLWLAR  165 (385)
Q Consensus       156 i~~l~~~i~~  165 (385)
                      +++++.+|+.
T Consensus       157 v~e~~~~l~~  166 (167)
T cd04160         157 VREGIEWLVE  166 (167)
T ss_pred             HHHHHHHHhc
Confidence            9999998864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.86  E-value=1.1e-20  Score=156.46  Aligned_cols=150  Identities=23%  Similarity=0.306  Sum_probs=116.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      +|+++|++|||||||++++.++ +...+.++.|.+....    ..+.+.+.+||+||+..++.++..++.++|++++|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~~----~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTKL----RLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEEE----EECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            4899999999999999997655 6677788888764322    2256889999999998888888999999999999999


Q ss_pred             CCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHH------HHHhc--CCeEEEEcCCCC------C
Q psy125           91 VTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIV------FHRKK--NLQYYDISAKSN------Y  154 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~------~~~~~--~~~~~~~Sa~~~------~  154 (385)
                      +++..++..+..|+..+...  ..+.|+++|+||+|+.......+...      +....  ...++++||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            99998888888888777653  24789999999999876443222221      11111  236778999998      7


Q ss_pred             ChHHHHHHHHH
Q psy125          155 NFEKPFLWLAR  165 (385)
Q Consensus       155 gi~~l~~~i~~  165 (385)
                      |+.+-+.||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            89999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04126 Rab20 Rab20 subfamily

Probab=99.86  E-value=3.8e-21  Score=164.87  Aligned_cols=85  Identities=32%  Similarity=0.577  Sum_probs=75.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+|+++|+.+.|.. +.+|+|.++..+.+    ..+.+.||||+|+++|..++..|+++++++|+||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999999875 57888877655443    4678999999999999999999999999999999


Q ss_pred             eCCChhhhhh
Q psy125          305 DVTSRITYKN  314 (385)
Q Consensus       305 d~~~~~s~~~  314 (385)
                      |++++.||++
T Consensus        76 Dvt~~~Sf~~   85 (220)
T cd04126          76 DVSNVQSLEE   85 (220)
T ss_pred             ECCCHHHHHH
Confidence            9999999887

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.85  E-value=4e-21  Score=158.75  Aligned_cols=113  Identities=27%  Similarity=0.557  Sum_probs=102.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+|+++++.+.+...+.++.+ +...+.+.+++..+.+.+|||||++++..++..++++++++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            4899999999999999999999889888888876 344556677788889999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          305 DVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |++++.||++                                                 |++|||++|.||+++|.+|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999877                                                 899999999999999999998


Q ss_pred             HHh
Q psy125          336 KLI  338 (385)
Q Consensus       336 ~i~  338 (385)
                      ++.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            874

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.85  E-value=2.7e-21  Score=161.94  Aligned_cols=113  Identities=26%  Similarity=0.421  Sum_probs=97.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.++||||++++++..+.+. .+.||+|.+...  +  +...+.+.||||||+++++.++..||+++|++|+
T Consensus        16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~--~--~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~   90 (181)
T PLN00223         16 KEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--V--EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF   90 (181)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE--E--EECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4589999999999999999999888776 467888866532  2  2346789999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||++++.+|++                                                    +++|||++|+||+++|
T Consensus        91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~  170 (181)
T PLN00223         91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGL  170 (181)
T ss_pred             EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHH
Confidence            999999998875                                                    3479999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      +||++++.++
T Consensus       171 ~~l~~~~~~~  180 (181)
T PLN00223        171 DWLSNNIANK  180 (181)
T ss_pred             HHHHHHHhhc
Confidence            9999988654

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.85  E-value=6.1e-21  Score=157.63  Aligned_cols=113  Identities=30%  Similarity=0.518  Sum_probs=102.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+|++++|.+|||||+++++++.+.+...+.++.+..+ .....+++..+.+.+|||||++++..++..+++++|++++|
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   80 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV   80 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence            47999999999999999999999888888888876443 45566788888999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      ||++++.+|++                                                 |++|||++|.||+++|++|+
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  160 (164)
T cd04145          81 FSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLV  160 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHH
Confidence            99999999877                                                 89999999999999999999


Q ss_pred             HHH
Q psy125          335 RKL  337 (385)
Q Consensus       335 ~~i  337 (385)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04145         161 RVI  163 (164)
T ss_pred             Hhh
Confidence            865

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.85  E-value=8.9e-21  Score=158.10  Aligned_cols=110  Identities=31%  Similarity=0.517  Sum_probs=100.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|.+|||||+++.+|..+.|...+.+|. .+.....+.+++..+.+.+|||||+++|..+++.+++++|++|+||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            589999999999999999999999999999887 4555566778888889999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125          305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~  323 (385)
                      |++++.||++                                                             |+||||++|
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~  159 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ  159 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            9999999876                                                             789999999


Q ss_pred             CCchHHHHHHHH
Q psy125          324 YNFEKPFLWLAR  335 (385)
Q Consensus       324 ~~v~~~f~~l~~  335 (385)
                      .||+++|+.++.
T Consensus       160 ~~v~~lf~~~~~  171 (173)
T cd04130         160 KNLKEVFDTAIL  171 (173)
T ss_pred             CCHHHHHHHHHh
Confidence            999999998874

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PLN00023 GTP-binding protein; Provisional

Probab=99.85  E-value=3.2e-20  Score=164.10  Aligned_cols=139  Identities=22%  Similarity=0.406  Sum_probs=115.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-------------CeeEEEEEEeCCCcccc
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-------------RGAIRFNVWDTAGQEKF   71 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-------------~~~~~~~i~Dt~g~~~~   71 (385)
                      +....+||+|+|..|||||||+++|+.+.+...+.++.|.++....+.++             ...+.+.+|||+|++.+
T Consensus        17 ~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf   96 (334)
T PLN00023         17 PPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY   96 (334)
T ss_pred             CCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence            34667999999999999999999999999988889999988766555543             24688999999999999


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhc-------------CCCCEEEEEeCCCCcchh--------h
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-------------ENIPIVLCGNKVDIKDRK--------V  130 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~-------------~~~~~ilv~nK~Dl~~~~--------~  130 (385)
                      ..++..++++++++|+|||+++..+++++..|+..+....             .+.|+++|+||+|+..++        .
T Consensus        97 rsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~  176 (334)
T PLN00023         97 KDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNL  176 (334)
T ss_pred             hhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccccc
Confidence            9999999999999999999999999999999999887642             247899999999986542        1


Q ss_pred             hHHHHHHHHhcCC
Q psy125          131 KAKSIVFHRKKNL  143 (385)
Q Consensus       131 ~~~~~~~~~~~~~  143 (385)
                      ..+...++...+.
T Consensus       177 ~e~a~~~A~~~g~  189 (334)
T PLN00023        177 VDAARQWVEKQGL  189 (334)
T ss_pred             HHHHHHHHHHcCC
Confidence            3455666666554

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.85  E-value=3e-20  Score=152.51  Aligned_cols=150  Identities=23%  Similarity=0.392  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      ||+++|.+|||||||+++++++. .....++.+.+.....+    ..+.+.+||+||+..+...+..++.++|++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999987776 44566677765544332    36889999999999888888889999999999999


Q ss_pred             CCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHHHHHH
Q psy125           91 VTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      ++++.++.....++..+...  ..+.|+++++||+|+.......+......     ....+++++|++++.|+++++.+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l  155 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL  155 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence            99998888777776665542  35789999999999875442222222222     233479999999999999999887


Q ss_pred             HH
Q psy125          164 AR  165 (385)
Q Consensus       164 ~~  165 (385)
                      ..
T Consensus       156 ~~  157 (158)
T cd00878         156 LQ  157 (158)
T ss_pred             hh
Confidence            64

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04177 RSR1 RSR1 subgroup

Probab=99.85  E-value=7.7e-21  Score=157.69  Aligned_cols=114  Identities=27%  Similarity=0.505  Sum_probs=104.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|.+|||||++++++..+.+...+.++.+..+ .+.+.+++..+.+.+|||||+++|..++..++++++++++||
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~   80 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY   80 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence            7899999999999999999999999888899987544 566677888889999999999999999999999999999999


Q ss_pred             eCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          305 DVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       305 d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |++++.+|+.                                                  |++|||++|.||+++|.+++
T Consensus        81 ~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~  160 (168)
T cd04177          81 SVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLV  160 (168)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHH
Confidence            9999999987                                                  78999999999999999999


Q ss_pred             HHHhc
Q psy125          335 RKLIG  339 (385)
Q Consensus       335 ~~i~~  339 (385)
                      ++++.
T Consensus       161 ~~~~~  165 (168)
T cd04177         161 RQIIC  165 (168)
T ss_pred             HHHhh
Confidence            98864

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04142 RRP22 RRP22 subfamily

Probab=99.85  E-value=9.6e-21  Score=160.66  Aligned_cols=117  Identities=21%  Similarity=0.315  Sum_probs=101.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc--------ccccccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYIQ  296 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~~  296 (385)
                      +||+++|.+|||||+|+++|+.+.|...+.++.+.+.....+.+++..+.+.||||||...+...        ...++++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            48999999999999999999999999889999877766666777888889999999998765322        2235789


Q ss_pred             CcEEEEEEeCCChhhhhh----------------------------------------------------hheeccccCC
Q psy125          297 GQCAIIMFDVTSRITYKN----------------------------------------------------YYDISAKSNY  324 (385)
Q Consensus       297 ~~~~ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~  324 (385)
                      +|++|+|||++++.||+.                                                    |+||||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999975                                                    7999999999


Q ss_pred             CchHHHHHHHHHHhcCC
Q psy125          325 NFEKPFLWLARKLIGDP  341 (385)
Q Consensus       325 ~v~~~f~~l~~~i~~~~  341 (385)
                      ||+++|+.+++.++.+.
T Consensus       161 ~v~~lf~~i~~~~~~~~  177 (198)
T cd04142         161 HILLLFKELLISATTRG  177 (198)
T ss_pred             CHHHHHHHHHHHhhccC
Confidence            99999999999988654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.85  E-value=3e-20  Score=156.23  Aligned_cols=155  Identities=17%  Similarity=0.262  Sum_probs=116.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.++|+++|.+|||||||++++.++.+. .+.++.+.+...    ...+++.+.+||+||+..++..+..++.++|+++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEE----LAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEE----EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            35689999999999999999998876543 345555544322    2234688999999999888888889999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHh------------cCCeEEEEcCCC
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRK------------KNLQYYDISAKS  152 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~  152 (385)
                      +|+|++++.++.....++..+..  ...+.|+++++||+|+.......++......            ....++++||++
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~  169 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR  169 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence            99999999888776666666554  2357899999999998643323333222211            233689999999


Q ss_pred             CCChHHHHHHHHHH
Q psy125          153 NYNFEKPFLWLARK  166 (385)
Q Consensus       153 ~~gi~~l~~~i~~~  166 (385)
                      +.|+++.+.+|...
T Consensus       170 ~~g~~~~~~wl~~~  183 (184)
T smart00178      170 RMGYGEGFKWLSQY  183 (184)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999999998754

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04135 Tc10 TC10 subfamily

Probab=99.85  E-value=1.5e-20  Score=156.96  Aligned_cols=112  Identities=28%  Similarity=0.425  Sum_probs=101.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|.+|+|||+|++++..+.|...+.++.+.. ....+.+++..+.+.+|||||++.|..+++.+++++|++|+||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeee-eEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            589999999999999999999999988888887643 3446677888888999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125          305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~  323 (385)
                      |++++.||++                                                             |+||||++|
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  159 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence            9999999876                                                             789999999


Q ss_pred             CCchHHHHHHHHHH
Q psy125          324 YNFEKPFLWLARKL  337 (385)
Q Consensus       324 ~~v~~~f~~l~~~i  337 (385)
                      .||+++|+.+++.+
T Consensus       160 ~gi~~~f~~~~~~~  173 (174)
T cd04135         160 KGLKTVFDEAILAI  173 (174)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999876

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>KOG0081|consensus

Probab=99.85  E-value=9.2e-23  Score=156.25  Aligned_cols=117  Identities=30%  Similarity=0.572  Sum_probs=107.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC---------CeeEEEEEeeCCCccccCcccccccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN---------RGAIRFNVWDTAGQEKFGGLRDGYYI  295 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~Dt~G~~~~~~~~~~~~~  295 (385)
                      +|.+.+|++|||||+++.++..+.|.....+|+|.++..+.+..+         +..+.+++|||+||++|+++...+++
T Consensus        10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfR   89 (219)
T KOG0081|consen   10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFR   89 (219)
T ss_pred             HHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHH
Confidence            577889999999999999999999999999999999988877543         23578999999999999999999999


Q ss_pred             cCcEEEEEEeCCChhhhhh-------------------------------------------------hheeccccCCCc
Q psy125          296 QGQCAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNF  326 (385)
Q Consensus       296 ~~~~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v  326 (385)
                      +|-||+|+||+|+..||.+                                                 |+||||-+|.||
T Consensus        90 DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv  169 (219)
T KOG0081|consen   90 DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNV  169 (219)
T ss_pred             hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCH
Confidence            9999999999999999998                                                 999999999999


Q ss_pred             hHHHHHHHHHHhcCC
Q psy125          327 EKPFLWLARKLIGDP  341 (385)
Q Consensus       327 ~~~f~~l~~~i~~~~  341 (385)
                      +++.+.|+..|.++-
T Consensus       170 ~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  170 EKAVELLLDLVMKRI  184 (219)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998887754

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.85  E-value=5.8e-20  Score=152.97  Aligned_cols=156  Identities=23%  Similarity=0.455  Sum_probs=122.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|+.|||||||++++..+. .....||.|.+......    .++.+.+||.+|+..++..+..++.++|++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~-~~~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGE-ISETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSS-EEEEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcc-ccccCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeE
Confidence            578999999999999999999976654 33466777766555444    5688999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH------hcCCeEEEEcCCCCCChHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR------KKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~  158 (385)
                      +|+|.++...+......+..+..  ...+.|+++++||.|+.......++.....      .....++.+|+.+|.|+.+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e  166 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE  166 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence            99999998888776666666655  235789999999999875433333332221      2234688999999999999


Q ss_pred             HHHHHHHHH
Q psy125          159 PFLWLARKL  167 (385)
Q Consensus       159 l~~~i~~~l  167 (385)
                      .+.+|...+
T Consensus       167 ~l~WL~~~~  175 (175)
T PF00025_consen  167 GLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.85  E-value=6.4e-21  Score=166.71  Aligned_cols=112  Identities=28%  Similarity=0.564  Sum_probs=102.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+|+++|+.+.|...|.+|++ ++..+.+.+++..+.+.||||+|++.|..++..++.++|++|+||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            4899999999999999999999999988999986 566677788888899999999999999999999999999999999


Q ss_pred             eCCChhhhhh----------------------------------------------------------hheeccccCCCc
Q psy125          305 DVTSRITYKN----------------------------------------------------------YYDISAKSNYNF  326 (385)
Q Consensus       305 d~~~~~s~~~----------------------------------------------------------~~e~Sak~~~~v  326 (385)
                      |++++.||++                                                          |++|||++|.||
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            9999999853                                                          799999999999


Q ss_pred             hHHHHHHHHHH
Q psy125          327 EKPFLWLARKL  337 (385)
Q Consensus       327 ~~~f~~l~~~i  337 (385)
                      +++|.+|++..
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999999865

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd01890 LepA LepA subfamily

Probab=99.84  E-value=5.6e-20  Score=154.21  Aligned_cols=154  Identities=17%  Similarity=0.229  Sum_probs=111.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC-------CCCcccc------cceeeeEEEEEEe-----CCeeEEEEEEeCCCccccc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGE-------FEKKYVA------TLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEKFG   72 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~-------~~~~~~~------~~g~t~~~~~~~~-----~~~~~~~~i~Dt~g~~~~~   72 (385)
                      +|+++|++|+|||||+++|+...       +...+.+      +.|.+........     +...+.+.+|||||+..+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999988732       1112222      3355555443332     4567889999999999888


Q ss_pred             cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEEEEc
Q psy125           73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYYDIS  149 (385)
Q Consensus        73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~S  149 (385)
                      ..+..++.++|++|+|+|+++..+++....|....   ..++|+++|+||+|+..........++....+.   .++++|
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~---~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL---ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS  158 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH---HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence            88888999999999999999876665554444322   257899999999998643222222233333333   489999


Q ss_pred             CCCCCChHHHHHHHHHHH
Q psy125          150 AKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l  167 (385)
                      |+++.|+++++.+|++.+
T Consensus       159 a~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         159 AKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             ccCCCCHHHHHHHHHhhC
Confidence            999999999999998864

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.84  E-value=1.3e-20  Score=155.63  Aligned_cols=113  Identities=34%  Similarity=0.652  Sum_probs=106.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|++|||||+++++++.+.+...+.++.|.++....+.+++..+.+.||||||++++...+..+++++|++|+||
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~   81 (163)
T cd01860           2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVY   81 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEE
Confidence            79999999999999999999999988888999998888888888988999999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |++++.+|+.                                                ++|+||++|.|++++|.+|++.
T Consensus        82 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (163)
T cd01860          82 DITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKK  161 (163)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999977                                                8999999999999999999998


Q ss_pred             H
Q psy125          337 L  337 (385)
Q Consensus       337 i  337 (385)
                      |
T Consensus       162 l  162 (163)
T cd01860         162 L  162 (163)
T ss_pred             h
Confidence            6

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.84  E-value=1.1e-20  Score=159.57  Aligned_cols=111  Identities=23%  Similarity=0.397  Sum_probs=91.5

Q ss_pred             eeEEEEECCCCCCHHHHHH-HHhcC-----ccccccccceee-EEEEEE--------EEeCCeeEEEEEeeCCCccccCc
Q psy125          224 SFKCVLVGDGGTGKTTFVK-RHLTG-----EFEKKYVATLGV-EVHPLV--------FHTNRGAIRFNVWDTAGQEKFGG  288 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~-~~~~~-----~~~~~~~~~~~~-~~~~~~--------~~~~~~~~~l~i~Dt~G~~~~~~  288 (385)
                      .+||+++|..|||||+|+. ++..+     .|...|.||+|. +.+...        +.+++..+.+.||||+|+++  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            3799999999999999996 55433     356678899863 322222        25678899999999999986  3


Q ss_pred             ccccccccCcEEEEEEeCCChhhhhh------------------------------------------------------
Q psy125          289 LRDGYYIQGQCAIIMFDVTSRITYKN------------------------------------------------------  314 (385)
Q Consensus       289 ~~~~~~~~~~~~ilv~d~~~~~s~~~------------------------------------------------------  314 (385)
                      +...||+++|++|+|||++++.||++                                                      
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            56779999999999999999999976                                                      


Q ss_pred             -------------hheeccccCCCchHHHHHHHHH
Q psy125          315 -------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       315 -------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                                   |+|||||+|.||+++|..++++
T Consensus       160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence                         7899999999999999999975

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04149 Arf6 Arf6 subfamily

Probab=99.84  E-value=4.9e-21  Score=158.57  Aligned_cols=109  Identities=26%  Similarity=0.424  Sum_probs=94.4

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||++++++..+.+. .+.+|.|.++...  .  ...+.+.+|||+|++++..+++.+|+++|++|
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~--~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii   81 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETV--T--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   81 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEE--E--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999877775 4678887665422  2  24678999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125          302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      +|||++++.+|++                                                    +++|||++|.||+++
T Consensus        82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~  161 (168)
T cd04149          82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  161 (168)
T ss_pred             EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHH
Confidence            9999999998876                                                    579999999999999


Q ss_pred             HHHHHH
Q psy125          330 FLWLAR  335 (385)
Q Consensus       330 f~~l~~  335 (385)
                      |.||++
T Consensus       162 ~~~l~~  167 (168)
T cd04149         162 LTWLSS  167 (168)
T ss_pred             HHHHhc
Confidence            999975

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.84  E-value=7.1e-20  Score=150.13  Aligned_cols=150  Identities=27%  Similarity=0.475  Sum_probs=115.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeC
Q psy125           12 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV   91 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~   91 (385)
                      |+++|++|||||||+|++.+..+...+.++.+......    ..+.+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKV----TKGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEE----EECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            79999999999999999999888877777777654432    23458899999999988888888899999999999999


Q ss_pred             CChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           92 TSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        92 ~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      ++..++.....++..+..  ...+.|+++++||.|+.............     .....+++++|++++.|+++++.+|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  157 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI  157 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence            998887666666655543  12578999999999986543222222111     11234789999999999999999886


Q ss_pred             H
Q psy125          165 R  165 (385)
Q Consensus       165 ~  165 (385)
                      +
T Consensus       158 ~  158 (159)
T cd04159         158 K  158 (159)
T ss_pred             h
Confidence            5

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.84  E-value=1e-20  Score=158.69  Aligned_cols=113  Identities=23%  Similarity=0.412  Sum_probs=98.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||++++++..+.+.. +.+|.|.++..  +.  ...+.+.+|||+|+++++.++..|++++|++|+
T Consensus        16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~   90 (182)
T PTZ00133         16 KEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET--VE--YKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF   90 (182)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            45899999999999999999998888865 67888766543  22  346789999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||++++.+|++                                                    +++|||++|.||+++|
T Consensus        91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~  170 (182)
T PTZ00133         91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGL  170 (182)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHH
Confidence            999999999877                                                    3589999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      .||++.+.++
T Consensus       171 ~~l~~~i~~~  180 (182)
T PTZ00133        171 DWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHh
Confidence            9999988654

>cd01898 Obg Obg subfamily

Probab=99.84  E-value=5.8e-20  Score=152.75  Aligned_cols=154  Identities=17%  Similarity=0.118  Sum_probs=108.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-EEEEEEeCCCccc----cccchhhh---hccC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQEK----FGGLRDGY---YIQG   82 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-~~~~i~Dt~g~~~----~~~~~~~~---~~~~   82 (385)
                      +|+++|++|||||||+|+|.+...  .+...++.|+.........+. ..+.+|||||...    ...+...+   +..+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            589999999999999999775432  222333444444333333333 4899999999742    12223333   3469


Q ss_pred             cEEEEEEeCCCh-hhhhcHHHHHHHHHHhc---CCCCEEEEEeCCCCcchhhhHH-HHHHHHh-cCCeEEEEcCCCCCCh
Q psy125           83 QCAIIMFDVTSR-ITYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVKAK-SIVFHRK-KNLQYYDISAKSNYNF  156 (385)
Q Consensus        83 d~illV~d~~~~-~~~~~~~~~~~~l~~~~---~~~~~ilv~nK~Dl~~~~~~~~-~~~~~~~-~~~~~~~~Sa~~~~gi  156 (385)
                      |++++|+|++++ .+++.+..|...+....   .+.|+++|+||+|+........ ...+... ...+++.+|++++.|+
T Consensus        80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            999999999998 67777777887776542   3689999999999865443322 3334444 2568999999999999


Q ss_pred             HHHHHHHHHH
Q psy125          157 EKPFLWLARK  166 (385)
Q Consensus       157 ~~l~~~i~~~  166 (385)
                      ++++.+|++.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.84  E-value=2.5e-20  Score=148.93  Aligned_cols=147  Identities=18%  Similarity=0.195  Sum_probs=107.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------chhhhh--cc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYY--IQ   81 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------~~~~~~--~~   81 (385)
                      ++|+++|.||||||||+|+|.+.+  ..+.+++|+|.+........+...+.++|+||.-....      ....++  .+
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            589999999999999999966655  55788999999999888877779999999999643222      223333  68


Q ss_pred             CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      .|+++.|+|++..+.-   ..+..++..  .++|+++++||+|+..+.. ......+.+..+.+++++||+++.|+++++
T Consensus        79 ~D~ii~VvDa~~l~r~---l~l~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~  153 (156)
T PF02421_consen   79 PDLIIVVVDATNLERN---LYLTLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK  153 (156)
T ss_dssp             SSEEEEEEEGGGHHHH---HHHHHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred             CCEEEEECCCCCHHHH---HHHHHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence            9999999999875322   223334433  4899999999999876544 234455777788999999999999999998


Q ss_pred             HHH
Q psy125          161 LWL  163 (385)
Q Consensus       161 ~~i  163 (385)
                      ..|
T Consensus       154 ~~I  156 (156)
T PF02421_consen  154 DAI  156 (156)
T ss_dssp             HHH
T ss_pred             hhC
Confidence            765

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd04158 ARD1 ARD1 subfamily

Probab=99.84  E-value=1.6e-20  Score=155.80  Aligned_cols=114  Identities=26%  Similarity=0.507  Sum_probs=98.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      |++++|.++||||++++++..+.+.. +.+|.|.....  +  +...+.+.+|||||++++..++..+++++|++++|||
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~--~--~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVET--V--EYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEE--E--EECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            58999999999999999998877654 77887766542  2  2346789999999999999999999999999999999


Q ss_pred             CCChhhhhh-----------------------------------------------------hheeccccCCCchHHHHH
Q psy125          306 VTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       306 ~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      ++++.+|.+                                                     |++||||+|.||+++|.|
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~  155 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW  155 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence            999999876                                                     567899999999999999


Q ss_pred             HHHHHhcCCCcc
Q psy125          333 LARKLIGDPNLE  344 (385)
Q Consensus       333 l~~~i~~~~~~~  344 (385)
                      |++.+..+...+
T Consensus       156 l~~~~~~~~~~~  167 (169)
T cd04158         156 LSRQLVAAGVLD  167 (169)
T ss_pred             HHHHHhhccccc
Confidence            999998877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.84  E-value=9.9e-21  Score=155.39  Aligned_cols=106  Identities=27%  Similarity=0.440  Sum_probs=92.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.++||||++++++..+.|. .+.||.|.+...  +.  ...+.+.+|||||++++..++..||+++|++|+||
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~--~~--~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET--VE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEE--EE--ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999888886 477888766532  22  24678999999999999999999999999999999


Q ss_pred             eCCChhhhhh----------------------------------------------------hheeccccCCCchHHHHH
Q psy125          305 DVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       305 d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |++++.+|++                                                    |++||||+|.||+++|+|
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~  155 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW  155 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence            9999999876                                                    468999999999999999


Q ss_pred             HHH
Q psy125          333 LAR  335 (385)
Q Consensus       333 l~~  335 (385)
                      |++
T Consensus       156 l~~  158 (159)
T cd04150         156 LSN  158 (159)
T ss_pred             Hhc
Confidence            974

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01861 Rab6 Rab6 subfamily

Probab=99.83  E-value=2.5e-20  Score=153.49  Aligned_cols=112  Identities=31%  Similarity=0.612  Sum_probs=104.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+|+++++...+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++|+||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999999998888899888888888888887888999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |++++.||++                                                ++++||++|.|++++|.+|++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            9999999987                                                8999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>KOG4252|consensus

Probab=99.83  E-value=2e-22  Score=157.66  Aligned_cols=116  Identities=34%  Similarity=0.634  Sum_probs=111.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+|++++|..+||||+++.+|+.+-|...|..++|+++....+.+....+.+.+|||+||++|..+...||++|++.+||
T Consensus        20 aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLV   99 (246)
T KOG4252|consen   20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLV   99 (246)
T ss_pred             hEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEEE
Confidence            48999999999999999999999999999999999999999998888888899999999999999999999999999999


Q ss_pred             EeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          304 FDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       304 ~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |+.||+.||+.                                               ++.+|+|...||.++|..|+.+
T Consensus       100 FSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLaeK  179 (246)
T KOG4252|consen  100 FSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAEK  179 (246)
T ss_pred             EecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence            99999999998                                               8999999999999999999998


Q ss_pred             Hhc
Q psy125          337 LIG  339 (385)
Q Consensus       337 i~~  339 (385)
                      +.+
T Consensus       180 ~~q  182 (246)
T KOG4252|consen  180 LTQ  182 (246)
T ss_pred             HHH
Confidence            876

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.83  E-value=2.1e-20  Score=155.92  Aligned_cols=110  Identities=28%  Similarity=0.450  Sum_probs=95.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|++++..+.+. .+.+|+|.+.....  .  ..+.+.+|||||++++..++..|+++++++|+
T Consensus        12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~--~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~   86 (175)
T smart00177       12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVT--Y--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF   86 (175)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEE--E--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence            4589999999999999999999878774 46788876654332  2  45789999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||++++.+|++                                                    |++|||++|.||+++|
T Consensus        87 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~  166 (175)
T smart00177       87 VVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGL  166 (175)
T ss_pred             EEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHH
Confidence            999999999876                                                    4579999999999999


Q ss_pred             HHHHHHH
Q psy125          331 LWLARKL  337 (385)
Q Consensus       331 ~~l~~~i  337 (385)
                      +||.+.+
T Consensus       167 ~~l~~~~  173 (175)
T smart00177      167 TWLSNNL  173 (175)
T ss_pred             HHHHHHh
Confidence            9998875

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.83  E-value=4.2e-20  Score=154.39  Aligned_cols=112  Identities=29%  Similarity=0.428  Sum_probs=100.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      .|++++|.+|||||+|++++..+.|...+.++.+..+. ..+.+++..+.+.+|||+|++.|..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            58999999999999999999999999889999875553 45667788889999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------------------hheeccccC
Q psy125          305 DVTSRITYKN-------------------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------------------~~e~Sak~~  323 (385)
                      |++++.||++                                                             |++|||++|
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence            9999988865                                                             689999999


Q ss_pred             CCchHHHHHHHHHH
Q psy125          324 YNFEKPFLWLARKL  337 (385)
Q Consensus       324 ~~v~~~f~~l~~~i  337 (385)
                      .||+++|.+|++..
T Consensus       161 ~~v~~lf~~l~~~~  174 (175)
T cd01870         161 EGVREVFEMATRAA  174 (175)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999999764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04155 Arl3 Arl3 subfamily

Probab=99.83  E-value=2.2e-19  Score=149.77  Aligned_cols=154  Identities=18%  Similarity=0.331  Sum_probs=112.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.++|+++|++|||||||++++.+..+ ..+.++.|.+......    .+..+.+||++|...+...+..++.++++++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~~~i~~----~~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii   86 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNIKTVQS----DGFKLNVWDIGGQRAIRPYWRNYFENTDCLI   86 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcceEEEEE----CCEEEEEEECCCCHHHHHHHHHHhcCCCEEE
Confidence            4578999999999999999999776543 3455666655433322    3578899999999877777778889999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHhc-----CCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-----NLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|+.+..++.....++..+..  ...+.|+++++||+|+.......+..+.....     ..+++++||+++.|++++
T Consensus        87 ~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~  166 (173)
T cd04155          87 YVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEG  166 (173)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHH
Confidence            99999998877666655555443  12468999999999986543222222221111     124789999999999999


Q ss_pred             HHHHHH
Q psy125          160 FLWLAR  165 (385)
Q Consensus       160 ~~~i~~  165 (385)
                      +.+|++
T Consensus       167 ~~~l~~  172 (173)
T cd04155         167 MNWVCK  172 (173)
T ss_pred             HHHHhc
Confidence            999875

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.83  E-value=3.4e-20  Score=153.17  Aligned_cols=113  Identities=28%  Similarity=0.588  Sum_probs=102.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC--ccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      +||+++|.+|||||+|++++..+  .|...+.++.|.++....+.++ +..+.+.+|||||++.+..++..+++++|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            48999999999999999998754  6888999999988877777665 56789999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          302 IMFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       302 lv~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      +|||++++.||++                                               |++|||++|.||+++|.+|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA  160 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence            9999999999875                                               78999999999999999999


Q ss_pred             HHH
Q psy125          335 RKL  337 (385)
Q Consensus       335 ~~i  337 (385)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04101         161 RAF  163 (164)
T ss_pred             HHh
Confidence            875

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>KOG0073|consensus

Probab=99.83  E-value=2.9e-19  Score=138.22  Aligned_cols=158  Identities=20%  Similarity=0.346  Sum_probs=126.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||.++|..|+||||++++|++ .......|+.|.......+    ..+.+++||.+|+...+..|.+|+.+.|++|
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~-~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglI   88 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLG-EDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLI   88 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcC-CCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEE
Confidence            3479999999999999999999555 4466677777766555544    6899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhh---h---HHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKV---K---AKSIVFHRKKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~---~---~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (385)
                      +|+|..++..++.....+..+..  .....|+++++||.|+...-.   .   .....+.+....+++.||+.+|.+..+
T Consensus        89 wvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~  168 (185)
T KOG0073|consen   89 WVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLE  168 (185)
T ss_pred             EEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHH
Confidence            99999999888876666655544  345689999999999873221   1   223344566677999999999999999


Q ss_pred             HHHHHHHHHhc
Q psy125          159 PFLWLARKLIG  169 (385)
Q Consensus       159 l~~~i~~~l~~  169 (385)
                      -+.+++..+..
T Consensus       169 gidWL~~~l~~  179 (185)
T KOG0073|consen  169 GIDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHHH
Confidence            99999887754

>cd04148 RGK RGK subfamily

Probab=99.83  E-value=4.7e-20  Score=159.34  Aligned_cols=117  Identities=20%  Similarity=0.322  Sum_probs=102.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccc-cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccc-cCcEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI-QGQCAII  302 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-~~~~~il  302 (385)
                      +||+++|.+|||||+|+++|+.+.+. ..+.++.+.++..+.+.+++..+.+.+|||+|++  ..+...+++ ++|++|+
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            48999999999999999999888887 7788887767777888888888999999999998  334456777 9999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.||++                                                 |+||||++|.||+++|.++
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999986                                                 7999999999999999999


Q ss_pred             HHHHhcCCCc
Q psy125          334 ARKLIGDPNL  343 (385)
Q Consensus       334 ~~~i~~~~~~  343 (385)
                      ++++......
T Consensus       159 ~~~~~~~~~~  168 (221)
T cd04148         159 VRQIRLRRDS  168 (221)
T ss_pred             HHHHHhhhcc
Confidence            9999754443

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01863 Rab18 Rab18 subfamily

Probab=99.83  E-value=6.6e-20  Score=151.00  Aligned_cols=113  Identities=34%  Similarity=0.633  Sum_probs=104.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|.+|||||++++++..+.+...+.++.+.++....+..++..+.+.+|||||++.+..+...+++++|++|+||
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999988888888999998888887778888889999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |++++.||+.                                                |+++||++|.|++++|.++++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            9999999877                                                8999999999999999999875


Q ss_pred             H
Q psy125          337 L  337 (385)
Q Consensus       337 i  337 (385)
                      +
T Consensus       161 ~  161 (161)
T cd01863         161 I  161 (161)
T ss_pred             C
Confidence            3

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.83  E-value=4.8e-20  Score=154.97  Aligned_cols=114  Identities=24%  Similarity=0.311  Sum_probs=99.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEe-CCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      .+||+++|.+|||||++++++..+.+... .+|.|.+.....+.. ++..+.+.+|||||++++..++..++++++++|+
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~   81 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVF   81 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEEE
Confidence            47999999999999999999998887654 577777766665554 3467889999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-----------------------------------------------------hheeccccCCCchHH
Q psy125          303 MFDVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       303 v~d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      |||++++.+|++                                                     +++|||++|.||+++
T Consensus        82 v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l  161 (183)
T cd04152          82 VVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEG  161 (183)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHH
Confidence            999999988765                                                     468999999999999


Q ss_pred             HHHHHHHHh
Q psy125          330 FLWLARKLI  338 (385)
Q Consensus       330 f~~l~~~i~  338 (385)
                      |.+|++.+.
T Consensus       162 ~~~l~~~l~  170 (183)
T cd04152         162 LEKLYEMIL  170 (183)
T ss_pred             HHHHHHHHH
Confidence            999999886

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>KOG1423|consensus

Probab=99.82  E-value=1.1e-18  Score=148.94  Aligned_cols=226  Identities=17%  Similarity=0.193  Sum_probs=164.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------------c
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------------L   74 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------------~   74 (385)
                      .+.++|++||.||||||||.|.+++ .....++....+|+......+..+...+.++||||.-.-..            -
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig-~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~  148 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIG-QKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN  148 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhC-CccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence            5689999999999999999999665 44556677788899999999999999999999999532111            1


Q ss_pred             hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh-------------H-HHHHHHHh
Q psy125           75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-------------A-KSIVFHRK  140 (385)
Q Consensus        75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~-------------~-~~~~~~~~  140 (385)
                      ....+..+|++++|+|+++....-. ...+..+ ....++|-++|.||+|.......             . ...++...
T Consensus       149 ~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l-~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~  226 (379)
T KOG1423|consen  149 PRDAAQNADCVVVVVDASATRTPLH-PRVLHML-EEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK  226 (379)
T ss_pred             HHHHHhhCCEEEEEEeccCCcCccC-hHHHHHH-HHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence            2334567999999999996322211 1122222 23368999999999997543220             0 01111111


Q ss_pred             ----c-------------CCeEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          141 ----K-------------NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       141 ----~-------------~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                          .             ...+|.+||.+|+|++++.++|.......        ||-++.....+...+....+.+++.
T Consensus       227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g--------pW~y~a~i~T~~s~e~l~~e~VRek  298 (379)
T KOG1423|consen  227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG--------PWKYPADIVTEESPEFLCSESVREK  298 (379)
T ss_pred             hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC--------CCCCCcccccccCHHHHHHHHHHHH
Confidence                1             12589999999999999999999887544        7788888999999999999999999


Q ss_pred             HHhcCCCCchhhhhh-------------------cCCCCeeEEEEECCCCCCHHHHHHH
Q psy125          204 QETALPDDDEDLMAA-------------------EMDMPSFKCVLVGDGGTGKTTFVKR  243 (385)
Q Consensus       204 ~~~~~~~~~~~~~~~-------------------~~~~~~~~i~~~G~~~vgks~~~~~  243 (385)
                      ....++++.||....                   .......+.+++|..|.--+.+..+
T Consensus       299 lLd~~pqEVPY~lq~~i~~w~e~~~g~l~I~~~v~~pK~s~~klliGkgG~ki~qI~~~  357 (379)
T KOG1423|consen  299 LLDHLPQEVPYNLQVRILSWKERPAGVLFIQVEVVCPKNSQKKLLIGKGGKKISQIGTR  357 (379)
T ss_pred             HHhhCccccCcceEEEEEEeeecCCcEEEEEEEEEcCCCcceeEEEcCCCccHHHHHHH
Confidence            999999999875431                   1123467889999988655555544

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.82  E-value=4.5e-19  Score=164.18  Aligned_cols=185  Identities=17%  Similarity=0.085  Sum_probs=136.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-EEEEEEeCCCcccccc-------chhhhhccC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQEKFGG-------LRDGYYIQG   82 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-~~~~i~Dt~g~~~~~~-------~~~~~~~~~   82 (385)
                      .|+|||.+|||||||+|+|...+  ..+++.+++|+.+....+.... ..+.++||||......       .....+..+
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            78999999999999999976543  3677888889888877665543 5699999999754221       112346789


Q ss_pred             cEEEEEEeCC---ChhhhhcHHHHHHHHHHh---cCCCCEEEEEeCCCCcchhhhH-HHHHHHHhcC--CeEEEEcCCCC
Q psy125           83 QCAIIMFDVT---SRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKVKA-KSIVFHRKKN--LQYYDISAKSN  153 (385)
Q Consensus        83 d~illV~d~~---~~~~~~~~~~~~~~l~~~---~~~~~~ilv~nK~Dl~~~~~~~-~~~~~~~~~~--~~~~~~Sa~~~  153 (385)
                      +++++|+|++   +...++....|+.++...   ..+.|+++|+||+|+....... ....+.....  ..++.+||+++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            9999999988   334445555566655543   2468999999999986543322 2222333322  36899999999


Q ss_pred             CChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125          154 YNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE  205 (385)
Q Consensus       154 ~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~  205 (385)
                      .|+++++..|...+...        +++++++...|...+..+.+++++.+.
T Consensus       319 ~GIdeLl~~I~~~L~~~--------~~~~~~~~~td~~~~~~~~EiiRE~~~  362 (390)
T PRK12298        319 LGVKELCWDLMTFIEEN--------PREEAEEAEAPEKVEFMWDDYHREQLE  362 (390)
T ss_pred             cCHHHHHHHHHHHhhhC--------cccCCcccccCccHHHHHHHHHHHHhh
Confidence            99999999999987654        457888888898889999999988865

>cd01862 Rab7 Rab7 subfamily

Probab=99.82  E-value=1.1e-19  Score=151.29  Aligned_cols=116  Identities=31%  Similarity=0.667  Sum_probs=107.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||++++++..+.+...+.++++.++....+.+.+..+.+.+|||||++.+..++..++++++++|+||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999999888888899888888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhhhh-----------------------------------------------------hheeccccCCCchHHHH
Q psy125          305 DVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       305 d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      |++++.+|++                                                     ++++||++|.||+++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            9999988764                                                     89999999999999999


Q ss_pred             HHHHHHhcC
Q psy125          332 WLARKLIGD  340 (385)
Q Consensus       332 ~l~~~i~~~  340 (385)
                      ++++.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999988775

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.82  E-value=1.2e-19  Score=149.87  Aligned_cols=115  Identities=35%  Similarity=0.750  Sum_probs=106.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|+|||+++++++...+...+.++.+.++....+..++..+.+.+|||||++++..++..+++.+|++|+||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            58999999999999999999988888888899988888888888888889999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |++++.+|+.                                                |+|+||++|.|++++|.+|+++
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999976                                                8999999999999999999998


Q ss_pred             Hhc
Q psy125          337 LIG  339 (385)
Q Consensus       337 i~~  339 (385)
                      +.+
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            854

Rab GTPases are implicated in vesicle trafficking.

>KOG4252|consensus

Probab=99.81  E-value=7.9e-21  Score=148.70  Aligned_cols=162  Identities=30%  Similarity=0.559  Sum_probs=146.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+|++++|..++||||++.+++.+-|...+..++|+.+......+....+...+|||+|++.+..+...|++++++.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            35899999999999999999999999999999999998888888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||+-+|..+|+.+..|+..+....+.+|.++|-||+|+.++..  ..+...+++....+++.+|++...++...|.+|+.
T Consensus        99 VFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLae  178 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAE  178 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence            9999999999999999999998889999999999999976544  34455677778889999999999999999999998


Q ss_pred             HHhc
Q psy125          166 KLIG  169 (385)
Q Consensus       166 ~l~~  169 (385)
                      .+.+
T Consensus       179 K~~q  182 (246)
T KOG4252|consen  179 KLTQ  182 (246)
T ss_pred             HHHH
Confidence            8744

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.81  E-value=2.5e-18  Score=140.73  Aligned_cols=155  Identities=28%  Similarity=0.503  Sum_probs=116.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|.+|+|||||+++++.+.+...+.++.+.+............+.+.+||+||+..+...+..+..+++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999988886555555555555554455555558899999999988888888888899999999


Q ss_pred             EeCCCh-hhhhcHH-HHHHHHHHhcC-CCCEEEEEeCCCCcchhhhHHHH-HHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           89 FDVTSR-ITYKNVP-NWHRDLVRVCE-NIPIVLCGNKVDIKDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        89 ~d~~~~-~~~~~~~-~~~~~l~~~~~-~~~~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|+... .++.... .|...+..... +.|+++++||.|+.......... .+......+++++||.++.|+.+++..|
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            998776 5555443 55555555434 78999999999987643222222 2333445689999999999999998875

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd04171 SelB SelB subfamily

Probab=99.81  E-value=1e-18  Score=144.19  Aligned_cols=154  Identities=15%  Similarity=0.055  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCc-ccccceeeeEEEEEEeCCe-eEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKK-YVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~-~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.|+++|++|||||||+|+|.+...... .....+.|........... ...+.+|||||++.+......++.++|++++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            3689999999999999999775321110 0111233333222222222 5689999999998776656667889999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHHh---cCCeEEEEcCCCCCChHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHRK---KNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      |+|+++....+. ...+..+ ......|+++++||+|+.....    ..+..+....   ...+++++|++++.|+++++
T Consensus        81 V~d~~~~~~~~~-~~~~~~~-~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  158 (164)
T cd04171          81 VVAADEGIMPQT-REHLEIL-ELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELK  158 (164)
T ss_pred             EEECCCCccHhH-HHHHHHH-HHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHH
Confidence            999987321111 1111112 1223348999999999865421    2233333333   35689999999999999998


Q ss_pred             HHHHH
Q psy125          161 LWLAR  165 (385)
Q Consensus       161 ~~i~~  165 (385)
                      ..+.+
T Consensus       159 ~~l~~  163 (164)
T cd04171         159 EYLDE  163 (164)
T ss_pred             HHHhh
Confidence            88754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.81  E-value=1.5e-19  Score=149.54  Aligned_cols=112  Identities=21%  Similarity=0.360  Sum_probs=97.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc-cCcccccccccCcEEEEEE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~~~~ilv~  304 (385)
                      ||+++|.+|||||+|+++++.+.|...+.++.+..+ ...+.+++..+.+.+|||||+++ +......+++++|++|+||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            589999999999999999999888888888875444 45567788888999999999986 3456677999999999999


Q ss_pred             eCCChhhhhh--------------------------------------------------hheeccccC-CCchHHHHHH
Q psy125          305 DVTSRITYKN--------------------------------------------------YYDISAKSN-YNFEKPFLWL  333 (385)
Q Consensus       305 d~~~~~s~~~--------------------------------------------------~~e~Sak~~-~~v~~~f~~l  333 (385)
                      |++++.||++                                                  |+||||++| .||+++|.+|
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999985                                                  899999999 5999999999


Q ss_pred             HHHHh
Q psy125          334 ARKLI  338 (385)
Q Consensus       334 ~~~i~  338 (385)
                      ++++.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            99774

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04114 Rab30 Rab30 subfamily

Probab=99.81  E-value=3.5e-19  Score=147.92  Aligned_cols=114  Identities=38%  Similarity=0.636  Sum_probs=104.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+|++++|.+|||||++++++..+.+...+.++++.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus         7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v   86 (169)
T cd04114           7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILT   86 (169)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999988888888888888888777788888888899999999999999989999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.+|+.                                                |++|||++|.|++++|.+|++
T Consensus        87 ~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~  166 (169)
T cd04114          87 YDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLAC  166 (169)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999865                                                789999999999999999998


Q ss_pred             HH
Q psy125          336 KL  337 (385)
Q Consensus       336 ~i  337 (385)
                      .+
T Consensus       167 ~~  168 (169)
T cd04114         167 RL  168 (169)
T ss_pred             Hh
Confidence            75

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.80  E-value=1.1e-18  Score=158.55  Aligned_cols=157  Identities=17%  Similarity=0.145  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC-eeEEEEEEeCCCccccc----cchh---hhhccC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFG----GLRD---GYYIQG   82 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~----~~~~---~~~~~~   82 (385)
                      .|+|||.+|||||||+|+|....  +.+.+.+++|..+....+.. ....+.+||+||.....    .+..   ..+..+
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            68999999999999999966533  34566677788777766554 45679999999974321    1222   245679


Q ss_pred             cEEEEEEeCCChhhhhcHHHHHHHHHHhc---CCCCEEEEEeCCCCcchhh-hH-HHHHHHHhcCCeEEEEcCCCCCChH
Q psy125           83 QCAIIMFDVTSRITYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKV-KA-KSIVFHRKKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~~~~~~l~~~~---~~~~~ilv~nK~Dl~~~~~-~~-~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (385)
                      +++++|+|+++..+++....|..++....   .++|+++|+||+|+..... .. ....+......+++++||+++.|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            99999999998777777777877776532   4689999999999865432 21 2222334445789999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy125          158 KPFLWLARKLIG  169 (385)
Q Consensus       158 ~l~~~i~~~l~~  169 (385)
                      +++.+|.+.+..
T Consensus       318 eL~~~L~~~l~~  329 (335)
T PRK12299        318 ELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988754

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.80  E-value=1.8e-19  Score=153.44  Aligned_cols=113  Identities=26%  Similarity=0.415  Sum_probs=101.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      ||+++|.+|||||+++++++.+.+...+.++.+ +.....+.+.+..+.+.||||+|+..|..++..++.++|++|+|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999999888888875 4555667777777899999999999999999999999999999999


Q ss_pred             CCChhhhhh---------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          306 VTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       306 ~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      ++++.+|++                                                   |+++||++|.||+++|.+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            999999885                                                   58999999999999999999


Q ss_pred             HHHhc
Q psy125          335 RKLIG  339 (385)
Q Consensus       335 ~~i~~  339 (385)
                      +.+..
T Consensus       160 ~~~~~  164 (198)
T cd04147         160 RQANL  164 (198)
T ss_pred             HHhhc
Confidence            98753

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04123 Rab21 Rab21 subfamily

Probab=99.80  E-value=4.2e-19  Score=146.18  Aligned_cols=113  Identities=33%  Similarity=0.580  Sum_probs=102.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|.+|||||+++++++.+.+...+.++.+.+.....+...+..+.+.+|||+|++.+..+++.+++++|++++||
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999988887777777766776777777777788999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |++++.+|+.                                                ++++||++|.|++++|.++++.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999875                                                7899999999999999999987


Q ss_pred             H
Q psy125          337 L  337 (385)
Q Consensus       337 i  337 (385)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            6

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04129 Rho2 Rho2 subfamily

Probab=99.80  E-value=9.6e-19  Score=147.62  Aligned_cols=118  Identities=28%  Similarity=0.398  Sum_probs=103.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      .|++++|++|+|||+|++++..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+....+.++++++++++||
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            58999999999999999999888888888888755543 35566777788999999999999888888899999999999


Q ss_pred             eCCChhhhhh-----------------------------------------------------------hheeccccCCC
Q psy125          305 DVTSRITYKN-----------------------------------------------------------YYDISAKSNYN  325 (385)
Q Consensus       305 d~~~~~s~~~-----------------------------------------------------------~~e~Sak~~~~  325 (385)
                      |++++.||++                                                           |+||||++|.|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  160 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG  160 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence            9999999986                                                           79999999999


Q ss_pred             chHHHHHHHHHHhcCCCc
Q psy125          326 FEKPFLWLARKLIGDPNL  343 (385)
Q Consensus       326 v~~~f~~l~~~i~~~~~~  343 (385)
                      |+++|.+++++++.....
T Consensus       161 v~~~f~~l~~~~~~~~~~  178 (187)
T cd04129         161 VDDVFEAATRAALLVRKS  178 (187)
T ss_pred             HHHHHHHHHHHHhcccCc
Confidence            999999999988776544

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd01878 HflX HflX subfamily

Probab=99.80  E-value=2.1e-18  Score=147.75  Aligned_cols=154  Identities=17%  Similarity=0.110  Sum_probs=105.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC-eeEEEEEEeCCCcccccc--c------hhhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGG--L------RDGY   78 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~~--~------~~~~   78 (385)
                      +.++|+|+|++|||||||+|++++......  ...+.|.......... +...+.+|||||......  .      ....
T Consensus        40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~  117 (204)
T cd01878          40 GIPTVALVGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEE  117 (204)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHH
Confidence            357999999999999999999887653222  1122232222222222 223789999999732111  0      1112


Q ss_pred             hccCcEEEEEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125           79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (385)
                      +..+|++++|+|++++..+.....|...+... ..+.|+++|+||+|+.......   ........+++++||+++.|++
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi~  194 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEGLD  194 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCCHH
Confidence            56899999999999987776655555555442 2468999999999986543322   3344556689999999999999


Q ss_pred             HHHHHHHHH
Q psy125          158 KPFLWLARK  166 (385)
Q Consensus       158 ~l~~~i~~~  166 (385)
                      +++.+|...
T Consensus       195 ~l~~~L~~~  203 (204)
T cd01878         195 ELLEAIEEL  203 (204)
T ss_pred             HHHHHHHhh
Confidence            999998765

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.79  E-value=2e-19  Score=148.35  Aligned_cols=84  Identities=15%  Similarity=0.206  Sum_probs=75.0

Q ss_pred             EEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeC
Q psy125          227 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV  306 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~  306 (385)
                      |+++|.+|||||+++++|..+.+...+.+|+|...    ..++...+.+.+|||+|+++|+.++..|++++|++|+|||+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            79999999999999999998888888999987643    23455678899999999999999999999999999999999


Q ss_pred             CChhhhhh
Q psy125          307 TSRITYKN  314 (385)
Q Consensus       307 ~~~~s~~~  314 (385)
                      +++.+|.+
T Consensus        78 t~~~s~~~   85 (164)
T cd04162          78 ADSERLPL   85 (164)
T ss_pred             CCHHHHHH
Confidence            99988875

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>KOG0070|consensus

Probab=99.79  E-value=1.9e-18  Score=137.73  Aligned_cols=158  Identities=25%  Similarity=0.386  Sum_probs=128.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ....+|+++|--||||||+++.+-.+..... .||.|.......+    +++.+.+||.+|+.+++..+..|+.+.+++|
T Consensus        15 ~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~lI   89 (181)
T KOG0070|consen   15 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQGLI   89 (181)
T ss_pred             cceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcEEE
Confidence            5678999999999999999999666665555 8999988888777    4899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhhhHHHH---HHHHhc--CCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAKSI---VFHRKK--NLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~~~~~~---~~~~~~--~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|.++++.+......+..+....  .+.|+++++||.|+...-...++.   .+....  ...+..++|.+|+|+.+-
T Consensus        90 fVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~eg  169 (181)
T KOG0070|consen   90 FVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLYEG  169 (181)
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHHHH
Confidence            9999999998877776666665533  478999999999987654433322   222222  336778899999999999


Q ss_pred             HHHHHHHHhc
Q psy125          160 FLWLARKLIG  169 (385)
Q Consensus       160 ~~~i~~~l~~  169 (385)
                      ++++...+..
T Consensus       170 l~wl~~~~~~  179 (181)
T KOG0070|consen  170 LDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHhc
Confidence            9999887643

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.79  E-value=1.1e-18  Score=140.50  Aligned_cols=133  Identities=19%  Similarity=0.222  Sum_probs=93.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc-----ccccchhhhhccCcEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE-----KFGGLRDGYYIQGQCA   85 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~-----~~~~~~~~~~~~~d~i   85 (385)
                      ||+++|++|||||||+|+|.++.+.  +.++.+...            .-.+|||||..     .+..+. ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~~~------------~~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAVEY------------NDGAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeEEE------------cCeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            8999999999999999998776532  222322111            11679999973     222222 347899999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      ++|+|++++.++.. ..|...     ...|+++++||+|+.+... ......+....+. +++++||+++.|+++++.++
T Consensus        67 ilv~d~~~~~s~~~-~~~~~~-----~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  140 (142)
T TIGR02528        67 ALVQSATDPESRFP-PGFASI-----FVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL  140 (142)
T ss_pred             EEEecCCCCCcCCC-hhHHHh-----ccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence            99999999988765 234332     1349999999999865322 2333445555554 79999999999999999887


Q ss_pred             H
Q psy125          164 A  164 (385)
Q Consensus       164 ~  164 (385)
                      +
T Consensus       141 ~  141 (142)
T TIGR02528       141 N  141 (142)
T ss_pred             h
Confidence            4

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.79  E-value=2.2e-18  Score=146.25  Aligned_cols=144  Identities=17%  Similarity=0.211  Sum_probs=104.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------cccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchh
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT--GEFEKKY------------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD   76 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~--~~~~~~~------------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~   76 (385)
                      +|+++|.+|+|||||+++|+.  +.+....            ..+.|.+..........+.+.+.+|||||+.++.....
T Consensus         4 ~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~   83 (194)
T cd01891           4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEVE   83 (194)
T ss_pred             EEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHHH
Confidence            899999999999999999886  4443322            23466777666666677789999999999998888888


Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHH-------hcCCeEE
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHR-------KKNLQYY  146 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~-------~~~~~~~  146 (385)
                      .+++++|++++|+|+++.. +.....++..+..  .+.|+++|+||+|+.....   ..+...++.       ..+.+++
T Consensus        84 ~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv  160 (194)
T cd01891          84 RVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVL  160 (194)
T ss_pred             HHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEE
Confidence            8999999999999998742 1222233333322  4789999999999864322   223333331       2256899


Q ss_pred             EEcCCCCCChH
Q psy125          147 DISAKSNYNFE  157 (385)
Q Consensus       147 ~~Sa~~~~gi~  157 (385)
                      .+||++|.|+.
T Consensus       161 ~~Sa~~g~~~~  171 (194)
T cd01891         161 YASAKNGWASL  171 (194)
T ss_pred             Eeehhcccccc
Confidence            99999998774

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04157 Arl6 Arl6 subfamily

Probab=99.79  E-value=3.1e-19  Score=147.12  Aligned_cols=107  Identities=25%  Similarity=0.477  Sum_probs=91.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCc-cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|+++|.+|||||++++++..+. +...+.+|+|.+....    ....+.+.+|||||++++..++..|+++++++|+||
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            48999999999999999988765 4667888888654332    234678899999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------------hheeccccCCCchHHH
Q psy125          305 DVTSRITYKN------------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |++++.+|..                                                      |++|||++|.||+++|
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~  156 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV  156 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence            9999987632                                                      5789999999999999


Q ss_pred             HHHHHH
Q psy125          331 LWLARK  336 (385)
Q Consensus       331 ~~l~~~  336 (385)
                      .+|+++
T Consensus       157 ~~l~~~  162 (162)
T cd04157         157 QWLQAQ  162 (162)
T ss_pred             HHHhcC
Confidence            999753

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04154 Arl2 Arl2 subfamily

Probab=99.79  E-value=4.4e-19  Score=147.83  Aligned_cols=108  Identities=21%  Similarity=0.400  Sum_probs=92.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+|++++|.+|||||++++++... +...+.+|+|....  .+..+  .+.+.+|||||++.++.++..+++++|++++
T Consensus        13 ~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~--~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~   87 (173)
T cd04154          13 REMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIK--TLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIW   87 (173)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            4589999999999999999998866 44567788774443  33333  5778999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||++++.+|++                                                    |++|||++|.||+++|
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  167 (173)
T cd04154          88 VVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGI  167 (173)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHH
Confidence            999999988866                                                    7899999999999999


Q ss_pred             HHHHH
Q psy125          331 LWLAR  335 (385)
Q Consensus       331 ~~l~~  335 (385)
                      .+++.
T Consensus       168 ~~l~~  172 (173)
T cd04154         168 DWLVD  172 (173)
T ss_pred             HHHhc
Confidence            99874

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.79  E-value=1.1e-18  Score=144.04  Aligned_cols=114  Identities=30%  Similarity=0.523  Sum_probs=102.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+||||||++++++.+.+...+.++.+.. ..+....++..+.+.+|||||+..+..++..+++.++++++||
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999999888888887544 3455677888899999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          305 DVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |++++.||++                                                 |+++||++|.||+++|.++++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999876                                                 799999999999999999998


Q ss_pred             HHhc
Q psy125          336 KLIG  339 (385)
Q Consensus       336 ~i~~  339 (385)
                      .+.+
T Consensus       160 ~~~~  163 (164)
T cd04139         160 EIRQ  163 (164)
T ss_pred             HHHh
Confidence            8753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PTZ00099 rab6; Provisional

Probab=99.78  E-value=1.1e-17  Score=138.93  Aligned_cols=140  Identities=29%  Similarity=0.535  Sum_probs=117.9

Q ss_pred             CCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhc
Q psy125           32 GEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC  111 (385)
Q Consensus        32 ~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~  111 (385)
                      +.|.+.+.++.|.++.......+.+.+.+.+|||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45667788999988887777888889999999999999999999999999999999999999999999989998876643


Q ss_pred             -CCCCEEEEEeCCCCcchh--hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhcCC
Q psy125          112 -ENIPIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  171 (385)
Q Consensus       112 -~~~~~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~  171 (385)
                       .+.|+++|+||+|+...+  ...+...+.......++++||+++.|++++|.+|++.+...+
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence             568899999999986432  233445566666778999999999999999999999986643

>PRK04213 GTP-binding protein; Provisional

Probab=99.78  E-value=2.5e-18  Score=146.91  Aligned_cols=159  Identities=21%  Similarity=0.144  Sum_probs=102.1

Q ss_pred             CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCc-----------c
Q psy125            1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ-----------E   69 (385)
Q Consensus         1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~-----------~   69 (385)
                      |-.+...+.++|+++|++|||||||+|+|.+..+.  ....+|+|+........    .+.+|||||.           +
T Consensus         1 ~~~~~~~~~~~i~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~   74 (201)
T PRK04213          1 MFETRPDRKPEIVFVGRSNVGKSTLVRELTGKKVR--VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQE   74 (201)
T ss_pred             CCcccCCCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHH
Confidence            33344456789999999999999999998876643  33445777765544332    5899999994           3


Q ss_pred             ccccchhhhhc----cCcEEEEEEeCCChhhhhc---------H-HHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHH
Q psy125           70 KFGGLRDGYYI----QGQCAIIMFDVTSRITYKN---------V-PNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSI  135 (385)
Q Consensus        70 ~~~~~~~~~~~----~~d~illV~d~~~~~~~~~---------~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~  135 (385)
                      .++..+..++.    .++++++|+|.++......         . ..+...+.  ..+.|+++|+||+|+.... .....
T Consensus        75 ~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~p~iiv~NK~Dl~~~~-~~~~~  151 (201)
T PRK04213         75 KIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR--ELGIPPIVAVNKMDKIKNR-DEVLD  151 (201)
T ss_pred             HHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH--HcCCCeEEEEECccccCcH-HHHHH
Confidence            33333333433    4567888888765432200         0 11122222  1478999999999986543 11222


Q ss_pred             HHHHhcC---------CeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          136 VFHRKKN---------LQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       136 ~~~~~~~---------~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      ++....+         .+++++||+++ |+++++.+|++.+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        152 EIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             HHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            2323222         25799999999 999999999987643

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.78  E-value=5.8e-18  Score=138.58  Aligned_cols=147  Identities=16%  Similarity=0.155  Sum_probs=107.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhhcc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYIQ   81 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~~~   81 (385)
                      ++|+++|++|+|||||++++++.. .....+..+++..............+.+|||||.......        ....+.+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~   80 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRD-RAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE   80 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCc-eEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence            589999999999999999977654 3333445566655554444445678899999997654321        2245678


Q ss_pred             CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      +|++++|+|++++.+......+..     ..+.|+++++||+|+......     .......+++++|++++.|+++++.
T Consensus        81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~  150 (157)
T cd04164          81 ADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKE  150 (157)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHH
Confidence            999999999998766554332222     357899999999998754332     3344567899999999999999999


Q ss_pred             HHHHHH
Q psy125          162 WLARKL  167 (385)
Q Consensus       162 ~i~~~l  167 (385)
                      +|...+
T Consensus       151 ~l~~~~  156 (157)
T cd04164         151 ALLELA  156 (157)
T ss_pred             HHHHhh
Confidence            987753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.78  E-value=8.1e-19  Score=146.31  Aligned_cols=107  Identities=29%  Similarity=0.486  Sum_probs=92.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||++++++..+.+.. +.+|+|.++....  .  ..+.+.+|||||++++...+..+++++|++|+|
T Consensus        15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~--~--~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V   89 (174)
T cd04153          15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIV--Y--KNIRFLMWDIGGQESLRSSWNTYYTNTDAVILV   89 (174)
T ss_pred             ccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEE--E--CCeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence            4799999999999999999998888765 5788876654332  2  357789999999999999999999999999999


Q ss_pred             EeCCChhhhhh----------------------------------------------------hheeccccCCCchHHHH
Q psy125          304 FDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       304 ~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      ||++++.+|..                                                    +++|||++|.||+++|.
T Consensus        90 ~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~  169 (174)
T cd04153          90 IDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLD  169 (174)
T ss_pred             EECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHH
Confidence            99999988764                                                    57899999999999999


Q ss_pred             HHHH
Q psy125          332 WLAR  335 (385)
Q Consensus       332 ~l~~  335 (385)
                      +|++
T Consensus       170 ~l~~  173 (174)
T cd04153         170 WIAS  173 (174)
T ss_pred             HHhc
Confidence            9975

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.78  E-value=5.4e-18  Score=147.98  Aligned_cols=154  Identities=18%  Similarity=0.194  Sum_probs=115.5

Q ss_pred             cccccchhhhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEE
Q psy125           69 EKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYY  146 (385)
Q Consensus        69 ~~~~~~~~~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~  146 (385)
                      +++..+.+.+++++|++++|+|++++. ++..+..|+..+..  .++|+++|+||+|+..... ..+....+...++.++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~  101 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL  101 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence            566667778999999999999999877 78888888876543  6899999999999965333 2233445556778999


Q ss_pred             EEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeE
Q psy125          147 DISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFK  226 (385)
Q Consensus       147 ~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (385)
                      .+||+++.|+++++..+..                                                           -.
T Consensus       102 ~~SAktg~gi~eLf~~l~~-----------------------------------------------------------~~  122 (245)
T TIGR00157       102 MTSSKNQDGLKELIEALQN-----------------------------------------------------------RI  122 (245)
T ss_pred             EEecCCchhHHHHHhhhcC-----------------------------------------------------------CE
Confidence            9999999999988865432                                                           14


Q ss_pred             EEEECCCCCCHHHHHHHHhcCc------cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125          227 CVLVGDGGTGKTTFVKRHLTGE------FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG  287 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  287 (385)
                      ++++|.+|||||||+|.++...      .........++|.....+.+.+ +   .|+||||...+.
T Consensus       123 ~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l~~-~---~liDtPG~~~~~  185 (245)
T TIGR00157       123 SVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHFHG-G---LIADTPGFNEFG  185 (245)
T ss_pred             EEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEcCC-c---EEEeCCCccccC
Confidence            7899999999999999987442      2222233344777777777743 3   699999986654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01893 Miro1 Miro1 subfamily

Probab=99.78  E-value=1.8e-18  Score=143.21  Aligned_cols=113  Identities=18%  Similarity=0.273  Sum_probs=95.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      .|++++|.+|||||+|++++..+.|...+..+.. . .......++..+.+.+|||||++++...+..+++++|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP-E-ITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc-c-eEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            3899999999999999999999888766554322 2 2344455667788999999999988887778889999999999


Q ss_pred             eCCChhhhhh----------------------------------------------------hheeccccCCCchHHHHH
Q psy125          305 DVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       305 d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |++++.||++                                                    |+||||++|.||+++|..
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  158 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY  158 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence            9999999875                                                    779999999999999999


Q ss_pred             HHHHHhc
Q psy125          333 LARKLIG  339 (385)
Q Consensus       333 l~~~i~~  339 (385)
                      +++.++.
T Consensus       159 ~~~~~~~  165 (166)
T cd01893         159 AQKAVLH  165 (166)
T ss_pred             HHHHhcC
Confidence            9988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.78  E-value=1.4e-17  Score=144.31  Aligned_cols=164  Identities=34%  Similarity=0.547  Sum_probs=130.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      +..+||+++|+.|||||||+++|..+.+...+.++.+..............+.+.+|||+|++.++.++..++.++++++
T Consensus         3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l   82 (219)
T COG1100           3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL   82 (219)
T ss_pred             cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence            34589999999999999999999999999888888887777776666666899999999999999999999999999999


Q ss_pred             EEEeCCChhh-hhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhhhH--------------HHHHHHHh---cCCeEEE
Q psy125           87 IMFDVTSRIT-YKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVKA--------------KSIVFHRK---KNLQYYD  147 (385)
Q Consensus        87 lV~d~~~~~~-~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~~~--------------~~~~~~~~---~~~~~~~  147 (385)
                      +|+|..+..+ .+....|...+.... ...|+++++||+|+.......              ........   ....+++
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (219)
T COG1100          83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE  162 (219)
T ss_pred             EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence            9999999554 455667888877755 368999999999997653211              11111111   1234899


Q ss_pred             EcCC--CCCChHHHHHHHHHHHhcC
Q psy125          148 ISAK--SNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       148 ~Sa~--~~~gi~~l~~~i~~~l~~~  170 (385)
                      +|++  .+.++.+++..+.+.+...
T Consensus       163 ~s~~~~~~~~v~~~~~~~~~~~~~~  187 (219)
T COG1100         163 TSAKSLTGPNVNELFKELLRKLLEE  187 (219)
T ss_pred             eecccCCCcCHHHHHHHHHHHHHHh
Confidence            9999  9999999999988887543

>cd00157 Rho Rho (Ras homology) family

Probab=99.78  E-value=3.6e-18  Score=142.06  Aligned_cols=110  Identities=32%  Similarity=0.496  Sum_probs=97.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +|++++|.+|||||++++++..+.+...+.++.. +........++..+.+.+|||||++++......+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            5899999999999999999999988777777775 334455667788889999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------------------hheeccccCC
Q psy125          305 DVTSRITYKN------------------------------------------------------------YYDISAKSNY  324 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------------------~~e~Sak~~~  324 (385)
                      |++++.||..                                                            |+++||++|.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            9999999876                                                            7999999999


Q ss_pred             CchHHHHHHHH
Q psy125          325 NFEKPFLWLAR  335 (385)
Q Consensus       325 ~v~~~f~~l~~  335 (385)
                      |++++|.+|++
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999999876

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.77  E-value=3.3e-18  Score=142.91  Aligned_cols=151  Identities=17%  Similarity=0.131  Sum_probs=104.9

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccc----cccch---hhhhccCcEE
Q psy125           14 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEK----FGGLR---DGYYIQGQCA   85 (385)
Q Consensus        14 lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~----~~~~~---~~~~~~~d~i   85 (385)
                      ++|++|||||||+|+|.+...  ......+.|..+........ ...+.+|||||...    ...+.   ...+.++|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            589999999999999877654  23344455555444444444 67889999999732    12222   3346789999


Q ss_pred             EEEEeCCCh------hhhhcHHHHHHHHHHhc--------CCCCEEEEEeCCCCcchhhhHHH--HHHHHhcCCeEEEEc
Q psy125           86 IIMFDVTSR------ITYKNVPNWHRDLVRVC--------ENIPIVLCGNKVDIKDRKVKAKS--IVFHRKKNLQYYDIS  149 (385)
Q Consensus        86 llV~d~~~~------~~~~~~~~~~~~l~~~~--------~~~~~ilv~nK~Dl~~~~~~~~~--~~~~~~~~~~~~~~S  149 (385)
                      ++|+|+++.      ..+.....|...+....        .+.|+++|+||+|+.........  ..........++.+|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999987      35555555555554321        47899999999998755443322  223344566899999


Q ss_pred             CCCCCChHHHHHHHHHH
Q psy125          150 AKSNYNFEKPFLWLARK  166 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~  166 (385)
                      ++++.|+++++..+.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999988654

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.77  E-value=7.9e-18  Score=158.63  Aligned_cols=152  Identities=22%  Similarity=0.255  Sum_probs=113.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYY   79 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~   79 (385)
                      ..++|+++|++|||||||+|+|++.. ...+.+.+|+|++........+++.+.+|||||+......        ...++
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~-~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~  280 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQD-RAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI  280 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCC-CcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence            45899999999999999999977643 3345567788888776666666788899999998543321        23567


Q ss_pred             ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125           80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      .++|++++|+|++++.+++..  |+..+..  .+.|+++|+||+|+...    ....+....+.+++.+|+++ .|+++.
T Consensus       281 ~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~~  351 (442)
T TIGR00450       281 KQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKAL  351 (442)
T ss_pred             hhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHHH
Confidence            899999999999988776543  5554432  47899999999998643    11223444556789999998 588998


Q ss_pred             HHHHHHHHhc
Q psy125          160 FLWLARKLIG  169 (385)
Q Consensus       160 ~~~i~~~l~~  169 (385)
                      +..+.+.+..
T Consensus       352 ~~~L~~~i~~  361 (442)
T TIGR00450       352 VDLLTQKINA  361 (442)
T ss_pred             HHHHHHHHHH
Confidence            8888887754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.77  E-value=5.3e-18  Score=155.40  Aligned_cols=152  Identities=17%  Similarity=0.116  Sum_probs=104.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC-eeEEEEEEeCCCcccc--ccc------hhhhh
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKF--GGL------RDGYY   79 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~--~~~------~~~~~   79 (385)
                      .++|+|+|.+|||||||+|+|++...  .....++.|++........ ++..+.+|||+|....  ...      ....+
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~--~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~  266 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADV--YAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEV  266 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCce--eeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHH
Confidence            37999999999999999999777542  2234445555544433333 3468899999997221  111      12246


Q ss_pred             ccCcEEEEEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125           80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (385)
                      .++|++++|+|++++........|...+... ..+.|+++|+||+|+.......    .......+++.+||+++.|+++
T Consensus       267 ~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~----~~~~~~~~~i~iSAktg~GI~e  342 (351)
T TIGR03156       267 READLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIE----RLEEGYPEAVFVSAKTGEGLDL  342 (351)
T ss_pred             HhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHH----HHHhCCCCEEEEEccCCCCHHH
Confidence            7899999999999987766555554444432 2478999999999986532211    1112234689999999999999


Q ss_pred             HHHHHHHH
Q psy125          159 PFLWLARK  166 (385)
Q Consensus       159 l~~~i~~~  166 (385)
                      ++..|...
T Consensus       343 L~~~I~~~  350 (351)
T TIGR03156       343 LLEAIAER  350 (351)
T ss_pred             HHHHHHhh
Confidence            99988764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.77  E-value=1.3e-18  Score=143.97  Aligned_cols=105  Identities=21%  Similarity=0.304  Sum_probs=91.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      +|+++|.+|||||++++++... +...+.+|+|.+..  .+..  ..+.+.+|||||+++++.++..|++++|++|+|||
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~--~~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT--KLRL--DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE--EEEE--CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            3799999999999999997754 77888999887643  3333  45778999999999999999999999999999999


Q ss_pred             CCChhhhhh-------------------------------------------------------hheeccccC------C
Q psy125          306 VTSRITYKN-------------------------------------------------------YYDISAKSN------Y  324 (385)
Q Consensus       306 ~~~~~s~~~-------------------------------------------------------~~e~Sak~~------~  324 (385)
                      ++++.+|++                                                       +++|||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            999998876                                                       677999998      8


Q ss_pred             CchHHHHHHHH
Q psy125          325 NFEKPFLWLAR  335 (385)
Q Consensus       325 ~v~~~f~~l~~  335 (385)
                      |++++|+||+.
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.77  E-value=1.2e-17  Score=137.03  Aligned_cols=147  Identities=16%  Similarity=0.122  Sum_probs=102.9

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc------hhhhh--ccCcEE
Q psy125           14 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL------RDGYY--IQGQCA   85 (385)
Q Consensus        14 lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~------~~~~~--~~~d~i   85 (385)
                      |+|.+|||||||+|++.+.....  .+.++.|...........+..+.+|||||+..+...      ...++  .++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKV--GNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccc--cCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            58999999999999987764332  234555555443333334468999999998765542      34445  489999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      ++|+|+.+....   ..+...+..  .++|+++++||+|+..... ......+....+.+++++|+.++.|+.+++..+.
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~  153 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA  153 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence            999999875432   233333333  4789999999999865432 2223345555567899999999999999999988


Q ss_pred             HHH
Q psy125          165 RKL  167 (385)
Q Consensus       165 ~~l  167 (385)
                      +.+
T Consensus       154 ~~~  156 (158)
T cd01879         154 ELA  156 (158)
T ss_pred             HHh
Confidence            764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.77  E-value=1.1e-17  Score=151.82  Aligned_cols=156  Identities=17%  Similarity=0.172  Sum_probs=110.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-EEEEEEeCCCccccc----cchhhh---hcc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQEKFG----GLRDGY---YIQ   81 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-~~~~i~Dt~g~~~~~----~~~~~~---~~~   81 (385)
                      -.|+|||.+|||||||+|+|.....  .+.+.+++|..+......... ..+.+||+||+....    .+...+   +.+
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            3789999999999999999766432  344445556655555444333 789999999975322    222233   457


Q ss_pred             CcEEEEEEeCCCh---hhhhcHHHHHHHHHHh---cCCCCEEEEEeCCCCcchhhhHHHH-HHHHhcCCeEEEEcCCCCC
Q psy125           82 GQCAIIMFDVTSR---ITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKVKAKSI-VFHRKKNLQYYDISAKSNY  154 (385)
Q Consensus        82 ~d~illV~d~~~~---~~~~~~~~~~~~l~~~---~~~~~~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~  154 (385)
                      ++++++|+|+++.   ..++.+..|..++...   ..++|+++|+||+|+.......+.. .+....+.+++++||+++.
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence            9999999999976   4556666666665543   2478999999999986654333222 2333445689999999999


Q ss_pred             ChHHHHHHHHHHH
Q psy125          155 NFEKPFLWLARKL  167 (385)
Q Consensus       155 gi~~l~~~i~~~l  167 (385)
                      |+++++..|.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999988764

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.76  E-value=2.6e-17  Score=136.45  Aligned_cols=152  Identities=17%  Similarity=0.166  Sum_probs=104.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC---eeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR---GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~---~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      .|+++|++|+|||||+|+|..+.+.....  .+.|..........   ....+.+|||||+..+...+...+..+|++++
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~   79 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEA--GGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAIL   79 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccC--CCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEE
Confidence            58999999999999999988776554322  23344333333332   36789999999998877777778899999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHH------hcCCeEEEEcCCCCCChHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHR------KKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~------~~~~~~~~~Sa~~~~gi~~  158 (385)
                      |+|+++....+.. ..+..+..  .+.|+++++||+|+.....   ......+..      ....+++++|++++.|+++
T Consensus        80 v~d~~~~~~~~~~-~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  156 (168)
T cd01887          80 VVAADDGVMPQTI-EAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDD  156 (168)
T ss_pred             EEECCCCccHHHH-HHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHH
Confidence            9999875322211 12222222  4789999999999864321   111111111      1135789999999999999


Q ss_pred             HHHHHHHHH
Q psy125          159 PFLWLARKL  167 (385)
Q Consensus       159 l~~~i~~~l  167 (385)
                      ++.+|.+..
T Consensus       157 l~~~l~~~~  165 (168)
T cd01887         157 LLEAILLLA  165 (168)
T ss_pred             HHHHHHHhh
Confidence            999988764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>KOG0071|consensus

Probab=99.76  E-value=1.4e-17  Score=125.34  Aligned_cols=156  Identities=22%  Similarity=0.327  Sum_probs=122.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      -++++|+.+|-.++||||++..+. ........|+.|.....+.+    +++.+++||.+|+++.+.+|+.|+.+..++|
T Consensus        15 ~KE~~ilmlGLd~aGKTtiLyKLk-l~~~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqglI   89 (180)
T KOG0071|consen   15 NKEMRILMLGLDAAGKTTILYKLK-LGQSVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   89 (180)
T ss_pred             cccceEEEEecccCCceehhhHHh-cCCCcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCceEE
Confidence            357899999999999999999944 44556677888888777766    7899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHh---c--CCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRK---K--NLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~---~--~~~~~~~Sa~~~~gi~~l  159 (385)
                      ||+|..+....++....+..+.+  ...+.++++.+||.|+......+++..+...   .  ...+.++++.++.|..+-
T Consensus        90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~eg  169 (180)
T KOG0071|consen   90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLKEG  169 (180)
T ss_pred             EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHHHH
Confidence            99999888766665554444433  2356788899999999887666655544332   2  235678899999999988


Q ss_pred             HHHHHHHH
Q psy125          160 FLWLARKL  167 (385)
Q Consensus       160 ~~~i~~~l  167 (385)
                      +.++...+
T Consensus       170 lswlsnn~  177 (180)
T KOG0071|consen  170 LSWLSNNL  177 (180)
T ss_pred             HHHHHhhc
Confidence            88876653

>KOG0075|consensus

Probab=99.76  E-value=3.7e-18  Score=129.42  Aligned_cols=155  Identities=23%  Similarity=0.406  Sum_probs=124.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+.+.++|-.++|||||+|.+..+.+.....|+.|..    ..+++.+.+.+.+||.||+..++.++..|++.++++++|
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfn----mrk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFN----MRKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccce----eEEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            5789999999999999999988888888888887765    455677999999999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      +|+.++...+.....+..+..  ....+|+++++||.|+...-....+..-.     ......++.+|++...+++..++
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~  175 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLD  175 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHH
Confidence            999998777655554444443  33589999999999987654433332211     12234689999999999999999


Q ss_pred             HHHHHH
Q psy125          162 WLARKL  167 (385)
Q Consensus       162 ~i~~~l  167 (385)
                      +|.+.-
T Consensus       176 Wli~hs  181 (186)
T KOG0075|consen  176 WLIEHS  181 (186)
T ss_pred             HHHHHh
Confidence            988753

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.76  E-value=1e-17  Score=130.47  Aligned_cols=114  Identities=28%  Similarity=0.529  Sum_probs=88.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFE--KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~--~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      ||+|+|++|||||||+++|+++.+.  ....+..+.+..............+.+||++|.+.+.......+.++|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999987766  23334455555555666677777799999999987777666778999999999


Q ss_pred             EeCCChhhhhcHHH---HHHHHHHhcCCCCEEEEEeCCC
Q psy125           89 FDVTSRITYKNVPN---WHRDLVRVCENIPIVLCGNKVD  124 (385)
Q Consensus        89 ~d~~~~~~~~~~~~---~~~~l~~~~~~~~~ilv~nK~D  124 (385)
                      ||++++.+++.+..   |+..+.....+.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999987644   5555555557899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01894 EngA1 EngA1 subfamily

Probab=99.76  E-value=1.3e-17  Score=136.52  Aligned_cols=148  Identities=19%  Similarity=0.137  Sum_probs=103.2

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--------chhhhhccCcE
Q psy125           13 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYYIQGQC   84 (385)
Q Consensus        13 ~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------~~~~~~~~~d~   84 (385)
                      +++|.+|||||||+|+|++... .......+.|+..........+..+.+|||||......        .....+.++|+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~   79 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRD-AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV   79 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcE-EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence            5899999999999999776542 22334556666655555555567899999999876443        22345688999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      +++|+|..+....... .....+..  .+.|+++++||+|+......  ...+......+++++|++++.|+++++..|+
T Consensus        80 ii~v~d~~~~~~~~~~-~~~~~~~~--~~~piiiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~  154 (157)
T cd01894          80 ILFVVDGREGLTPADE-EIAKYLRK--SKKPVILVVNKVDNIKEEDE--AAEFYSLGFGEPIPISAEHGRGIGDLLDAIL  154 (157)
T ss_pred             EEEEEeccccCCccHH-HHHHHHHh--cCCCEEEEEECcccCChHHH--HHHHHhcCCCCeEEEecccCCCHHHHHHHHH
Confidence            9999999876444322 22222222  36899999999998765433  1222233233789999999999999999988


Q ss_pred             HH
Q psy125          165 RK  166 (385)
Q Consensus       165 ~~  166 (385)
                      +.
T Consensus       155 ~~  156 (157)
T cd01894         155 EL  156 (157)
T ss_pred             hh
Confidence            65

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.76  E-value=5.8e-18  Score=142.09  Aligned_cols=117  Identities=25%  Similarity=0.402  Sum_probs=102.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      .||+++|.+||||||+++++..+.+...+.++.+..+ ...+..++..+.+.+|||||++++..++..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999998888877777765443 445566777788999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          305 DVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |++++.+|+.                                                 |+++||++|.|+.++|.++++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999998766                                                 799999999999999999999


Q ss_pred             HHhcCCC
Q psy125          336 KLIGDPN  342 (385)
Q Consensus       336 ~i~~~~~  342 (385)
                      .+.....
T Consensus       161 ~~~~~~~  167 (180)
T cd04137         161 EIEKVEN  167 (180)
T ss_pred             HHHHhcC
Confidence            9876543

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.76  E-value=1e-17  Score=158.90  Aligned_cols=150  Identities=17%  Similarity=0.212  Sum_probs=112.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYY   79 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~   79 (385)
                      ..++|+++|.+|||||||+|+|++.. ...+.+.+|+|++........++..+.+|||||.......        ...++
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~-~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEE-RAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            35899999999999999999977654 3334567788877766555556678999999998654321        22367


Q ss_pred             ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125           80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      .++|++++|+|++++.+++....|..     ..+.|+++|+||+|+.......      .....+++.+|++++.|++++
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L  361 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDEL  361 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHH
Confidence            88999999999998876654333322     3578999999999986533221      234567899999999999999


Q ss_pred             HHHHHHHHhc
Q psy125          160 FLWLARKLIG  169 (385)
Q Consensus       160 ~~~i~~~l~~  169 (385)
                      +..|.+.+..
T Consensus       362 ~~~L~~~l~~  371 (449)
T PRK05291        362 REAIKELAFG  371 (449)
T ss_pred             HHHHHHHHhh
Confidence            9999988743

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.76  E-value=2.8e-18  Score=141.10  Aligned_cols=106  Identities=22%  Similarity=0.348  Sum_probs=89.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      +|+++|.+|||||++++++..+.+.. +.+|.+.+...  +.. ...+.+.+|||||++++..++..+++++|++|+|||
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999999887764 46777755433  223 245789999999999999999999999999999999


Q ss_pred             CCChhhhhh-----------------------------------------------------hheeccccCCCchHHHHH
Q psy125          306 VTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       306 ~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      ++++.+|..                                                     +++|||++|.||+++|.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~  156 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK  156 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence            999987766                                                     567999999999999999


Q ss_pred             HHH
Q psy125          333 LAR  335 (385)
Q Consensus       333 l~~  335 (385)
                      |++
T Consensus       157 i~~  159 (160)
T cd04156         157 LAS  159 (160)
T ss_pred             Hhc
Confidence            975

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.75  E-value=3.9e-17  Score=152.04  Aligned_cols=158  Identities=17%  Similarity=0.195  Sum_probs=113.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccccc----cchhhh---hccC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFG----GLRDGY---YIQG   82 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~----~~~~~~---~~~~   82 (385)
                      .|+|||.+|||||||+|+|....  +.+.+.+++|..+....+... ...+.+||+||.....    .+...+   +.++
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            89999999999999999976543  234566777777776655544 6789999999974321    222333   4569


Q ss_pred             cEEEEEEeCCCh---hhhhcHHHHHHHHHHh---cCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCCh
Q psy125           83 QCAIIMFDVTSR---ITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNF  156 (385)
Q Consensus        83 d~illV~d~~~~---~~~~~~~~~~~~l~~~---~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (385)
                      +++++|+|+++.   ..++....|..++...   ..++|+++|+||+|+....  .....+......+++.+||+++.|+
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l~~l~~~l~~~i~~iSA~tgeGI  315 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENLEEFKEKLGPKVFPISALTGQGL  315 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHHHHHHHHhCCcEEEEeCCCCCCH
Confidence            999999999764   4445555566666543   2478999999999984322  2223344444468999999999999


Q ss_pred             HHHHHHHHHHHhcCCC
Q psy125          157 EKPFLWLARKLIGDPN  172 (385)
Q Consensus       157 ~~l~~~i~~~l~~~~~  172 (385)
                      ++++..|.+.+...+.
T Consensus       316 ~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        316 DELLYAVAELLEETPE  331 (424)
T ss_pred             HHHHHHHHHHHHhCcc
Confidence            9999999998866543

>cd00154 Rab Rab family

Probab=99.75  E-value=6e-18  Score=138.56  Aligned_cols=111  Identities=37%  Similarity=0.756  Sum_probs=103.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.++||||++++++..+.+...+.++.+.++....+..++..+.+.+||+||++.+......+++++|++|+||
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999999999988888899999999888888888889999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |.+++.+++.                                                |+++||++|.|++++|.+|++
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~  159 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE  159 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence            9999988777                                                899999999999999999863

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.75  E-value=4.2e-18  Score=144.10  Aligned_cols=90  Identities=24%  Similarity=0.389  Sum_probs=83.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-----CeeEEEEEeeCCCccccCcccccccccCcE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-----RGAIRFNVWDTAGQEKFGGLRDGYYIQGQC  299 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~  299 (385)
                      +||+++|.++||||+|+++|+.+.|...+.+|+|.++..+.+.++     +..+.+.||||+|+++|..+++.||+++|+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            489999999999999999999999999999999988877777663     467889999999999999999999999999


Q ss_pred             EEEEEeCCChhhhhh
Q psy125          300 AIIMFDVTSRITYKN  314 (385)
Q Consensus       300 ~ilv~d~~~~~s~~~  314 (385)
                      +|+|||++++.||++
T Consensus        81 iIlVyDvtn~~Sf~~   95 (202)
T cd04102          81 IILVHDLTNRKSSQN   95 (202)
T ss_pred             EEEEEECcChHHHHH
Confidence            999999999999976

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.75  E-value=1.2e-17  Score=139.05  Aligned_cols=111  Identities=24%  Similarity=0.523  Sum_probs=96.2

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ....||+++|..|+|||++++++..+.+. .+.||.|.+......    .++.+.+||.+|+..++.+|+.||.+++++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeE
Confidence            46799999999999999999998766544 477887766544333    4567899999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-----------------------------------------------------hheeccccCCCchH
Q psy125          302 IMFDVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEK  328 (385)
Q Consensus       302 lv~d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~  328 (385)
                      +|+|.+|...+.+                                                     ++.|||++|+||.|
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e  166 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE  166 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence            9999999988777                                                     67899999999999


Q ss_pred             HHHHHHHHH
Q psy125          329 PFLWLARKL  337 (385)
Q Consensus       329 ~f~~l~~~i  337 (385)
                      +|+||.++|
T Consensus       167 ~l~WL~~~~  175 (175)
T PF00025_consen  167 GLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            999999876

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PTZ00099 rab6; Provisional

Probab=99.75  E-value=6.2e-18  Score=140.47  Aligned_cols=97  Identities=32%  Similarity=0.586  Sum_probs=90.6

Q ss_pred             CccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh------------
Q psy125          247 GEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------  314 (385)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~------------  314 (385)
                      +.|.+.|.+|+|.++..+.+.+++..+.+.||||||+++|..+++.||++||++|+|||++++.||++            
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            56888999999999998888899999999999999999999999999999999999999999999988            


Q ss_pred             ------------------------------------hheeccccCCCchHHHHHHHHHHhcCCCc
Q psy125          315 ------------------------------------YYDISAKSNYNFEKPFLWLARKLIGDPNL  343 (385)
Q Consensus       315 ------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~~~~~  343 (385)
                                                          |+||||++|.||+++|.+|++.+.+.++.
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~~  147 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDNS  147 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcccc
Confidence                                                89999999999999999999999876644

>cd04151 Arl1 Arl1 subfamily

Probab=99.75  E-value=4.1e-18  Score=139.83  Aligned_cols=105  Identities=26%  Similarity=0.449  Sum_probs=89.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      |++++|.++||||++++++..+.+. .+.+|++.+...  +  +...+.+.+|||||++.+..++..++.+++++|+|||
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~~--~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVET--V--TYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeEE--E--EECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            6899999999999999998777665 456777665542  2  2345778999999999999999999999999999999


Q ss_pred             CCChhhhhh----------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          306 VTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       306 ~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      ++++.+|..                                                    +++|||++|.||+++|++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  155 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL  155 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence            999887753                                                    7899999999999999999


Q ss_pred             HH
Q psy125          334 AR  335 (385)
Q Consensus       334 ~~  335 (385)
                      ++
T Consensus       156 ~~  157 (158)
T cd04151         156 VN  157 (158)
T ss_pred             hc
Confidence            75

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.75  E-value=3.2e-17  Score=138.56  Aligned_cols=154  Identities=19%  Similarity=0.131  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccc--------------cceeeeEEEEEEeCCeeEEEEEEeCCCccccccchh
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVA--------------TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD   76 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~--------------~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~   76 (385)
                      +|+++|.+|+|||||+|+|++.........              ..+.+..............+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            489999999999999999887655543311              123344443444444567899999999987777778


Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHHh------------
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHRK------------  140 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~------------  140 (385)
                      .+++.+|++++|+|+.+...... ..++..+..  .+.|+++++||+|+.....    ..........            
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQT-REHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTR  157 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcc
Confidence            88899999999999987654332 223333322  5899999999999875222    1222222222            


Q ss_pred             --cCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125          141 --KNLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       141 --~~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                        ...+++++|++++.|+++++..|.+.+
T Consensus       158 ~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         158 NGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             cCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence              356899999999999999999998875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd00879 Sar1 Sar1 subfamily

Probab=99.74  E-value=6.3e-18  Score=143.15  Aligned_cols=110  Identities=20%  Similarity=0.368  Sum_probs=93.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ...|++++|++|||||++++++..+.+. .+.+|.+.+...  +.++  .+.+.+|||||+.++..++..++++++++++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~--i~~~--~~~~~l~D~~G~~~~~~~~~~~~~~ad~iil   92 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEE--LTIG--NIKFKTFDLGGHEQARRLWKDYFPEVDGIVF   92 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence            4689999999999999999998877764 567777654433  3333  4678999999999999888999999999999


Q ss_pred             EEeCCChhhhhh---------------------------------------------------------------hheec
Q psy125          303 MFDVTSRITYKN---------------------------------------------------------------YYDIS  319 (385)
Q Consensus       303 v~d~~~~~s~~~---------------------------------------------------------------~~e~S  319 (385)
                      |||++++.+|+.                                                               +++||
T Consensus        93 V~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  172 (190)
T cd00879          93 LVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMCS  172 (190)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEeE
Confidence            999999988765                                                               48899


Q ss_pred             cccCCCchHHHHHHHHHH
Q psy125          320 AKSNYNFEKPFLWLARKL  337 (385)
Q Consensus       320 ak~~~~v~~~f~~l~~~i  337 (385)
                      |++|.||+++|+||++.+
T Consensus       173 a~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         173 VVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             ecCCCChHHHHHHHHhhC
Confidence            999999999999998753

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.74  E-value=7.2e-17  Score=130.91  Aligned_cols=150  Identities=36%  Similarity=0.669  Sum_probs=113.8

Q ss_pred             EEcCCCCcHHHHHHHHhcCCC-CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCC
Q psy125           14 LVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT   92 (385)
Q Consensus        14 lvG~~g~GKSTLin~ll~~~~-~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~   92 (385)
                      ++|++|+|||||+|++++... .....++. ................+.+||+||...........+..+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999887766 33344444 5555566666667889999999998877666677889999999999999


Q ss_pred             ChhhhhcHHHHH--HHHHHhcCCCCEEEEEeCCCCcchhhhHH---HHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           93 SRITYKNVPNWH--RDLVRVCENIPIVLCGNKVDIKDRKVKAK---SIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        93 ~~~~~~~~~~~~--~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      ++..+.....|.  ........+.|+++++||+|+........   ..........+++.+|+.++.|+++++.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            998887766652  22222446889999999999865443322   2334555667999999999999999998875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd00876 Ras Ras family

Probab=99.74  E-value=7.7e-18  Score=138.33  Aligned_cols=111  Identities=31%  Similarity=0.578  Sum_probs=99.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      ||+++|++|||||+++++++.+.+...+.++.+ +........++..+.+.+||+||+..+..++..++++++++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998888888888876 5556666677777889999999999999999999999999999999


Q ss_pred             CCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          306 VTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       306 ~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      ++++.++.+                                                 |+++||++|.||+++|.+|++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            999998877                                                 8999999999999999999986


Q ss_pred             H
Q psy125          337 L  337 (385)
Q Consensus       337 i  337 (385)
                      |
T Consensus       160 i  160 (160)
T cd00876         160 I  160 (160)
T ss_pred             C
Confidence            4

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.74  E-value=1e-16  Score=136.49  Aligned_cols=155  Identities=12%  Similarity=0.096  Sum_probs=106.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc----------cccchh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK----------FGGLRD   76 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~~   76 (385)
                      ...++|+++|.+|||||||+|++++..+...+.+++|.|+.......   ...+.+|||||...          +.....
T Consensus        22 ~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~   98 (196)
T PRK00454         22 DDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIE   98 (196)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence            45689999999999999999998887767777888888877665443   36799999999532          112223


Q ss_pred             hhhcc---CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH----HHHHHHHhcCCeEEEEc
Q psy125           77 GYYIQ---GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----KSIVFHRKKNLQYYDIS  149 (385)
Q Consensus        77 ~~~~~---~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~~~~~S  149 (385)
                      .++..   .+++++|+|...+.....  .++..+... .+.|+++++||+|+.......    .+..........++++|
T Consensus        99 ~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~-~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~S  175 (196)
T PRK00454         99 EYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE-YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFS  175 (196)
T ss_pred             HHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH-cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            34443   367788888876543322  122122221 468899999999986543222    12233333356899999


Q ss_pred             CCCCCChHHHHHHHHHHH
Q psy125          150 AKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l  167 (385)
                      ++++.|+++++..|...+
T Consensus       176 a~~~~gi~~l~~~i~~~~  193 (196)
T PRK00454        176 SLKKQGIDELRAAIAKWL  193 (196)
T ss_pred             cCCCCCHHHHHHHHHHHh
Confidence            999999999999988765

>cd04163 Era Era subfamily

Probab=99.74  E-value=1.3e-16  Score=131.81  Aligned_cols=155  Identities=14%  Similarity=0.072  Sum_probs=104.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--------chhhhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYY   79 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------~~~~~~   79 (385)
                      ...+|+++|++|+|||||+|++++... ....+....+..............+.+|||||......        .....+
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCce-EeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            467999999999999999999776543 22233334444444444445567899999999754322        223457


Q ss_pred             ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc-hhhhHHHHHHHHhc--CCeEEEEcCCCCCCh
Q psy125           80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD-RKVKAKSIVFHRKK--NLQYYDISAKSNYNF  156 (385)
Q Consensus        80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~-~~~~~~~~~~~~~~--~~~~~~~Sa~~~~gi  156 (385)
                      .++|++++|+|+.++... ....+...+..  .+.|+++++||+|+.. ..............  ..+++.+|++++.|+
T Consensus        81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          81 KDVDLVLFVVDASEPIGE-GDEFILELLKK--SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             HhCCEEEEEEECCCccCc-hHHHHHHHHHH--hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            889999999999987221 11222233322  3689999999999873 33323323233332  358899999999999


Q ss_pred             HHHHHHHHHH
Q psy125          157 EKPFLWLARK  166 (385)
Q Consensus       157 ~~l~~~i~~~  166 (385)
                      ++++..|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999988764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.74  E-value=4.4e-17  Score=156.26  Aligned_cols=158  Identities=20%  Similarity=0.210  Sum_probs=111.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc----------ccch-h
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF----------GGLR-D   76 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~----------~~~~-~   76 (385)
                      ..++|+++|++|||||||+|+|++..+ ..+.+.+|+|++.........+..+.+|||||..+.          .... .
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~  288 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH  288 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence            458999999999999999999887654 345567788877655444444566789999996321          1111 2


Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH----HHHH-HHHhcCCeEEEEcCC
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----KSIV-FHRKKNLQYYDISAK  151 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~----~~~~-~~~~~~~~~~~~Sa~  151 (385)
                      .++..+|++++|+|+++..+++... ++..+..  .+.|+++|+||+|+.......    +... +......+++++||+
T Consensus       289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk  365 (472)
T PRK03003        289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK  365 (472)
T ss_pred             HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence            3467999999999999987776543 3333332  578999999999996432111    1111 122234588999999


Q ss_pred             CCCChHHHHHHHHHHHhc
Q psy125          152 SNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~~  169 (385)
                      ++.|+++++..+++.+..
T Consensus       366 ~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        366 TGRAVDKLVPALETALES  383 (472)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999987643

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.74  E-value=8.1e-17  Score=137.39  Aligned_cols=159  Identities=15%  Similarity=0.105  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC-CCcccccceeeeEEEEEEeCC---------------------------------
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNR---------------------------------   55 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~-~~~~~~~~g~t~~~~~~~~~~---------------------------------   55 (385)
                      ++|+++|++|+|||||+.++.+-.. ........|.+.........+                                 
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            4799999999999999999654211 101111112222221111111                                 


Q ss_pred             eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh----
Q psy125           56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK----  131 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~----  131 (385)
                      ....+.+|||||++.+.......+..+|++++|+|++++.........+..+. .....|+++++||+|+......    
T Consensus        81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~-~~~~~~iiivvNK~Dl~~~~~~~~~~  159 (203)
T cd01888          81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALE-IMGLKHIIIVQNKIDLVKEEQALENY  159 (203)
T ss_pred             cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHH-HcCCCcEEEEEEchhccCHHHHHHHH
Confidence            12678999999998776666667788999999999987421111112222222 2233578999999998753221    


Q ss_pred             HHHHHHHHh---cCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          132 AKSIVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       132 ~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      .....+...   ...+++++||+++.|+++++..|.+.+..
T Consensus       160 ~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         160 EQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            222222222   24579999999999999999999887643

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.74  E-value=8.2e-17  Score=151.60  Aligned_cols=158  Identities=17%  Similarity=0.125  Sum_probs=112.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc----c---hhhhhccC
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----L---RDGYYIQG   82 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----~---~~~~~~~~   82 (385)
                      -.|+|||.+|||||||+|+|...+  +.+...+++|+.+....+..+...+.+|||||......    +   ....+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            479999999999999999976643  33466788888888877777778999999999742211    1   12245779


Q ss_pred             cEEEEEEeCCChh----hhhcHHHHHHHHHHh------------cCCCCEEEEEeCCCCcchhhhH-HHHHHHHhcCCeE
Q psy125           83 QCAIIMFDVTSRI----TYKNVPNWHRDLVRV------------CENIPIVLCGNKVDIKDRKVKA-KSIVFHRKKNLQY  145 (385)
Q Consensus        83 d~illV~d~~~~~----~~~~~~~~~~~l~~~------------~~~~~~ilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~  145 (385)
                      +++|+|+|+++.+    .+..+..+..++...            ..++|+++|+||+|+....... .....+...+.++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V  317 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV  317 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence            9999999997532    233333333333322            2468999999999986543322 2222333446789


Q ss_pred             EEEcCCCCCChHHHHHHHHHHHhc
Q psy125          146 YDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       146 ~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      +.+||+++.|+++++.+|.+.+..
T Consensus       318 f~ISA~tgeGLdEL~~~L~ell~~  341 (500)
T PRK12296        318 FEVSAASREGLRELSFALAELVEE  341 (500)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999888754

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.74  E-value=3.7e-17  Score=148.95  Aligned_cols=155  Identities=15%  Similarity=0.172  Sum_probs=120.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--------chhhhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYY   79 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------~~~~~~   79 (385)
                      .-++++|+|+||||||||+|. +.+.....+++-+|+||+.......-+++.+.++||.|......        .....+
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNa-L~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNA-LLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHH-HhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            358999999999999999999 66677889999999999999999999999999999999753322        234567


Q ss_pred             ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125           80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      .++|.+++|+|.+.+..-... ..+.   ....++|+++|.||.|+.........   ....+.+++.+|++++.|++.+
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~-~~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~~L  367 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDL-ALIE---LLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLDAL  367 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhH-HHHH---hcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHHHH
Confidence            899999999999986322221 1222   23368999999999999765442222   1223447899999999999999


Q ss_pred             HHHHHHHHhcC
Q psy125          160 FLWLARKLIGD  170 (385)
Q Consensus       160 ~~~i~~~l~~~  170 (385)
                      ...|...+...
T Consensus       368 ~~~i~~~~~~~  378 (454)
T COG0486         368 REAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHhhc
Confidence            99998887553

>cd01889 SelB_euk SelB subfamily

Probab=99.74  E-value=5.3e-17  Score=137.60  Aligned_cols=156  Identities=15%  Similarity=0.084  Sum_probs=99.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC----CCCc-ccccceeeeEEEEE--Ee------------CCeeEEEEEEeCCCccc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGE----FEKK-YVATLGVEVHPLVF--HT------------NRGAIRFNVWDTAGQEK   70 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~----~~~~-~~~~~g~t~~~~~~--~~------------~~~~~~~~i~Dt~g~~~   70 (385)
                      ++|+++|+.|+|||||+++|+...    +... .....|.|......  ..            ......+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            589999999999999999987621    1111 11122333332221  11            22367899999999865


Q ss_pred             cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHH-------
Q psy125           71 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHR-------  139 (385)
Q Consensus        71 ~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~-------  139 (385)
                      +..........+|++++|+|+.+.........+.  +... .+.|+++++||+|+.....    ..+..+...       
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  157 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR  157 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4333333456789999999998754333222222  1122 3679999999999864322    112211111       


Q ss_pred             hcCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          140 KKNLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       140 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      ....+++++|++++.|+++++..|...+.
T Consensus       158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         158 FKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            23568999999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.74  E-value=6.7e-17  Score=157.71  Aligned_cols=155  Identities=16%  Similarity=0.201  Sum_probs=113.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC-------CCCccc------ccceeeeEEEEEEe-----CCeeEEEEEEeCCCcccc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGE-------FEKKYV------ATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~-------~~~~~~------~~~g~t~~~~~~~~-----~~~~~~~~i~Dt~g~~~~   71 (385)
                      -+|+++|+.++|||||+++|+...       +...+.      ...|.|........     ++..+.+++|||||+.++
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            379999999999999999988642       222222      23477776554433     344689999999999998


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEEEE
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYYDI  148 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~  148 (385)
                      ...+..++..+|++|+|+|+++....+....|...+.   .++|+++++||+|+..........++....+.   .++.+
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~v  160 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILA  160 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEe
Confidence            8888889999999999999998766665555544332   47899999999998643222112223333333   58999


Q ss_pred             cCCCCCChHHHHHHHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l  167 (385)
                      ||+++.|+++++..|+..+
T Consensus       161 SAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       161 SAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             eccCCCCHHHHHHHHHHhC
Confidence            9999999999999998875

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01895 EngA2 EngA2 subfamily

Probab=99.73  E-value=1.3e-16  Score=132.79  Aligned_cols=154  Identities=19%  Similarity=0.193  Sum_probs=102.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc-----------chhh
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-----------LRDG   77 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-----------~~~~   77 (385)
                      .++|+++|.+|+|||||+|+|++.... ......+.++.........++..+.+|||||......           ....
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~   80 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERV-IVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK   80 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccce-eccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence            579999999999999999998765432 2223344444443333333456688999999753311           0123


Q ss_pred             hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcch--hhhHHHHHHH-Hh----cCCeEEEEcC
Q psy125           78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR--KVKAKSIVFH-RK----KNLQYYDISA  150 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--~~~~~~~~~~-~~----~~~~~~~~Sa  150 (385)
                      .+.++|++++|+|+.++.+.... .+...+..  .+.|+++++||+|+...  .......... ..    ...+++.+|+
T Consensus        81 ~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (174)
T cd01895          81 AIERADVVLLVIDATEGITEQDL-RIAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA  157 (174)
T ss_pred             HHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence            45789999999999988665443 22222222  46899999999998654  2222222222 21    1358999999


Q ss_pred             CCCCChHHHHHHHHHH
Q psy125          151 KSNYNFEKPFLWLARK  166 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~  166 (385)
                      +++.|+.+++..+.+.
T Consensus       158 ~~~~~i~~~~~~l~~~  173 (174)
T cd01895         158 LTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cCCCCHHHHHHHHHHh
Confidence            9999999999888764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0073|consensus

Probab=99.73  E-value=2e-17  Score=128.17  Aligned_cols=112  Identities=25%  Similarity=0.471  Sum_probs=100.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ++++|.++|..|+|||+++++|+ ++-.....||.|....+..+    ..+.++|||..||...++.|+.||..+||+|+
T Consensus        15 rE~riLiLGLdNsGKTti~~kl~-~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglIw   89 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKKLL-GEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW   89 (185)
T ss_pred             heeEEEEEecCCCCchhHHHHhc-CCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence            46999999999999999999977 45577788888766655544    67789999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-----------------------------------------------------hheeccccCCCchHH
Q psy125          303 MFDVTSRITYKN-----------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       303 v~d~~~~~s~~~-----------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      |+|.+|+..|++                                                     .+-|||.+|+++.+.
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g  169 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG  169 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence            999999999999                                                     688999999999999


Q ss_pred             HHHHHHHHhc
Q psy125          330 FLWLARKLIG  339 (385)
Q Consensus       330 f~~l~~~i~~  339 (385)
                      |+||..++..
T Consensus       170 idWL~~~l~~  179 (185)
T KOG0073|consen  170 IDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHH
Confidence            9999999876

>PLN00023 GTP-binding protein; Provisional

Probab=99.73  E-value=1.8e-17  Score=146.78  Aligned_cols=94  Identities=23%  Similarity=0.392  Sum_probs=85.4

Q ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC-------------eeEEEEEeeCCCccccC
Q psy125          221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-------------GAIRFNVWDTAGQEKFG  287 (385)
Q Consensus       221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~i~Dt~G~~~~~  287 (385)
                      ....+||+++|..|||||+|+++|+.+.|...+.+|+|.++..+.+.+++             ..+.+.||||+|+++|+
T Consensus        18 ~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfr   97 (334)
T PLN00023         18 PCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYK   97 (334)
T ss_pred             CccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhh
Confidence            34568999999999999999999999999999999999998877776642             46889999999999999


Q ss_pred             cccccccccCcEEEEEEeCCChhhhhh
Q psy125          288 GLRDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       288 ~~~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      .+++.||++++++|+|||++++.||++
T Consensus        98 sL~~~yyr~AdgiILVyDITdr~SFen  124 (334)
T PLN00023         98 DCRSLFYSQINGVIFVHDLSQRRTKTS  124 (334)
T ss_pred             hhhHHhccCCCEEEEEEeCCCHHHHHH
Confidence            999999999999999999999999976

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.73  E-value=1.5e-17  Score=139.85  Aligned_cols=110  Identities=18%  Similarity=0.339  Sum_probs=91.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ...+++++|.+|||||++++++..+.+. .+.+|.+.+....  ..  .++.+.+|||||+..++.++..|++++|++|+
T Consensus        16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~   90 (184)
T smart00178       16 KHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEEL--AI--GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVY   90 (184)
T ss_pred             ccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEE--EE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            4589999999999999999999877664 4556665543332  22  35778999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-----------------------------------------------------------hheeccccC
Q psy125          303 MFDVTSRITYKN-----------------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       303 v~d~~~~~s~~~-----------------------------------------------------------~~e~Sak~~  323 (385)
                      |+|++++.+|+.                                                           +++|||++|
T Consensus        91 vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~  170 (184)
T smart00178       91 LVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRR  170 (184)
T ss_pred             EEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccC
Confidence            999999987755                                                           678999999


Q ss_pred             CCchHHHHHHHHHH
Q psy125          324 YNFEKPFLWLARKL  337 (385)
Q Consensus       324 ~~v~~~f~~l~~~i  337 (385)
                      .|++++|+||+.++
T Consensus       171 ~g~~~~~~wl~~~~  184 (184)
T smart00178      171 MGYGEGFKWLSQYI  184 (184)
T ss_pred             CChHHHHHHHHhhC
Confidence            99999999998753

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.73  E-value=1.5e-16  Score=151.95  Aligned_cols=158  Identities=18%  Similarity=0.163  Sum_probs=112.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccch-----------h
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR-----------D   76 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~-----------~   76 (385)
                      ..++|+++|.+|+|||||+|+|++... ....+.+|+|++........++..+.+|||||..+.....           .
T Consensus       171 ~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~  249 (429)
T TIGR03594       171 GPIKIAIIGRPNVGKSTLVNALLGEER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL  249 (429)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence            458999999999999999999876543 2345667888877665555555689999999976543321           2


Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc-chhhhHHHHHHH-----HhcCCeEEEEcC
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFH-----RKKNLQYYDISA  150 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~-~~~~~~~~~~~~-----~~~~~~~~~~Sa  150 (385)
                      .+++.+|++|+|+|+.++.+.+.. .+...+..  .+.|+++|+||+|+. ......+.....     .....+++++||
T Consensus       250 ~~~~~ad~~ilV~D~~~~~~~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA  326 (429)
T TIGR03594       250 KAIERADVVLLVLDATEGITEQDL-RIAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISA  326 (429)
T ss_pred             HHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeC
Confidence            357899999999999987666543 22222222  478999999999986 322222221111     113468999999


Q ss_pred             CCCCChHHHHHHHHHHHhc
Q psy125          151 KSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~  169 (385)
                      +++.|+++++..+.+....
T Consensus       327 ~~g~~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       327 LTGQGVDKLLDAIDEVYEN  345 (429)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999887643

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK11058 GTPase HflX; Provisional

Probab=99.73  E-value=8.3e-17  Score=150.84  Aligned_cols=155  Identities=21%  Similarity=0.159  Sum_probs=104.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-EEEEEEeCCCcccc--ccch------hhhhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQEKF--GGLR------DGYYI   80 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-~~~~i~Dt~g~~~~--~~~~------~~~~~   80 (385)
                      ++|+|+|.+|||||||+|+|.+....  ..+.++.|++.........+ ..+.+|||+|....  ...+      ...+.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~--v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVY--AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcee--eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            58999999999999999997765433  33445556655543333222 36789999997331  1111      22357


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCe-EEEEcCCCCCChHH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ-YYDISAKSNYNFEK  158 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~  158 (385)
                      ++|++|+|+|++++..++.+..|...+... ..+.|+++|+||+|+.......  .... ..+.+ ++.+||+++.|+++
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~--~~~~-~~~~~~~v~ISAktG~GIde  352 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPR--IDRD-EENKPIRVWLSAQTGAGIPL  352 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHH--HHHH-hcCCCceEEEeCCCCCCHHH
Confidence            899999999999987766654444333332 2478999999999986432111  1111 12333 58899999999999


Q ss_pred             HHHHHHHHHhc
Q psy125          159 PFLWLARKLIG  169 (385)
Q Consensus       159 l~~~i~~~l~~  169 (385)
                      ++..|...+..
T Consensus       353 L~e~I~~~l~~  363 (426)
T PRK11058        353 LFQALTERLSG  363 (426)
T ss_pred             HHHHHHHHhhh
Confidence            99999988743

>cd01859 MJ1464 MJ1464

Probab=99.73  E-value=3.1e-16  Score=128.22  Aligned_cols=153  Identities=14%  Similarity=0.090  Sum_probs=108.1

Q ss_pred             cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCC
Q psy125           73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS  152 (385)
Q Consensus        73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (385)
                      .+...+..++|++++|+|++++...... .+...+.  ..++|+++|+||+|+...........+....+.+++.+|+++
T Consensus         4 ~~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~   80 (156)
T cd01859           4 RLVRRIIKESDVVLEVLDARDPELTRSR-KLERYVL--ELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKE   80 (156)
T ss_pred             HHHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHH--hCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccc
Confidence            3456677889999999999876543331 2222222  146899999999998644322222223334456789999999


Q ss_pred             CCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECC
Q psy125          153 NYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGD  232 (385)
Q Consensus       153 ~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~  232 (385)
                      +.|+++++..+...+...                                                   ....+++++|.
T Consensus        81 ~~gi~~L~~~l~~~~~~~---------------------------------------------------~~~~~~~~ig~  109 (156)
T cd01859          81 RLGTKILRRTIKELAKID---------------------------------------------------GKEGKVGVVGY  109 (156)
T ss_pred             cccHHHHHHHHHHHHhhc---------------------------------------------------CCCcEEEEECC
Confidence            999999998887765321                                                   12257899999


Q ss_pred             CCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125          233 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ  283 (385)
Q Consensus       233 ~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~  283 (385)
                      +|+|||++++++.. .....+.+++|++.....+..+.   .+.+|||||.
T Consensus       110 ~~~Gkssl~~~l~~-~~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpGi  156 (156)
T cd01859         110 PNVGKSSIINALKG-RHSASTSPSPGYTKGEQLVKITS---KIYLLDTPGV  156 (156)
T ss_pred             CCCCHHHHHHHHhC-CCccccCCCCCeeeeeEEEEcCC---CEEEEECcCC
Confidence            99999999999874 44566778888887666555543   4789999994

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.72  E-value=1.6e-17  Score=136.24  Aligned_cols=105  Identities=27%  Similarity=0.486  Sum_probs=90.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      |++++|.+|||||+++++++.+. ...+.++.+.+.....+    ..+.+.+|||||++.+..++..++.++|++++|||
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999998776 45567777766544332    35678999999999999999999999999999999


Q ss_pred             CCChhhhhh----------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          306 VTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       306 ~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      ++++.+|..                                                    |+++||++|.||+++|.+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l  155 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL  155 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence            999988776                                                    7899999999999999999


Q ss_pred             HH
Q psy125          334 AR  335 (385)
Q Consensus       334 ~~  335 (385)
                      +.
T Consensus       156 ~~  157 (158)
T cd00878         156 LQ  157 (158)
T ss_pred             hh
Confidence            75

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.72  E-value=1.3e-17  Score=138.07  Aligned_cols=106  Identities=26%  Similarity=0.454  Sum_probs=87.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCc------cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGE------FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC  299 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~  299 (385)
                      +|+++|.+|||||+|++++....      +...+.+|.+.......  .+  ...+.+|||||++.+..++..+++++|+
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIE--VG--NARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEE--EC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            48999999999999999976422      23455666666554333  33  5678999999999999999999999999


Q ss_pred             EEEEEeCCChhhhhh------------------------------------------------------hheeccccCCC
Q psy125          300 AIIMFDVTSRITYKN------------------------------------------------------YYDISAKSNYN  325 (385)
Q Consensus       300 ~ilv~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~  325 (385)
                      +++|||++++.+++.                                                      ++++||++|.|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  156 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG  156 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence            999999999877665                                                      78999999999


Q ss_pred             chHHHHHHHH
Q psy125          326 FEKPFLWLAR  335 (385)
Q Consensus       326 v~~~f~~l~~  335 (385)
                      |+++|.||++
T Consensus       157 v~e~~~~l~~  166 (167)
T cd04160         157 VREGIEWLVE  166 (167)
T ss_pred             HHHHHHHHhc
Confidence            9999999975

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.72  E-value=1.2e-16  Score=130.71  Aligned_cols=139  Identities=14%  Similarity=0.064  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc----chhhhhccCcEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----LRDGYYIQGQCAI   86 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----~~~~~~~~~d~il   86 (385)
                      +|+++|++|+|||||+|++.+ .+.. ...+.+       ......    .+|||||......    .....+.++|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~-~~~~-~~~~~~-------v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQG-NYTL-ARKTQA-------VEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcC-CCcc-CccceE-------EEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            799999999999999999554 3321 111111       111221    2699999732221    1123468999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcC--CeEEEEcCCCCCChHHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      +|+|+++..++..  .|+..+   ..+.|+++++||+|+.... .....++....+  .+++++|++++.|+++++..++
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~  143 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA  143 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence            9999998866533  333332   2467899999999986532 233344444444  3899999999999999999998


Q ss_pred             HHHh
Q psy125          165 RKLI  168 (385)
Q Consensus       165 ~~l~  168 (385)
                      +.+.
T Consensus       144 ~~~~  147 (158)
T PRK15467        144 SLTK  147 (158)
T ss_pred             Hhch
Confidence            8763

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.72  E-value=1.2e-16  Score=133.78  Aligned_cols=144  Identities=15%  Similarity=0.144  Sum_probs=98.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc----------cccchh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK----------FGGLRD   76 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~~   76 (385)
                      ...++|+++|++|+|||||+|++++..+...+.++.|.|+....+..+.   .+.+|||||...          +.....
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            4568999999999999999999888766666778888888776655432   688999999532          111222


Q ss_pred             hhhc---cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHHhcC--CeEEE
Q psy125           77 GYYI---QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHRKKN--LQYYD  147 (385)
Q Consensus        77 ~~~~---~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~~~--~~~~~  147 (385)
                      .+++   .++++++|+|++.+...... .+...+..  .+.|+++++||+|+.....    ..++.......+  .++++
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~  169 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQL  169 (179)
T ss_pred             HHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEE
Confidence            3443   45799999999876544332 22222222  4789999999999864322    222333333332  37999


Q ss_pred             EcCCCCCCh
Q psy125          148 ISAKSNYNF  156 (385)
Q Consensus       148 ~Sa~~~~gi  156 (385)
                      +||+++.|+
T Consensus       170 ~Sa~~g~gi  178 (179)
T TIGR03598       170 FSSLKKTGI  178 (179)
T ss_pred             EECCCCCCC
Confidence            999999986

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.71  E-value=8.2e-17  Score=135.84  Aligned_cols=158  Identities=18%  Similarity=0.170  Sum_probs=109.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCc----------------ccccceeeeEEEEEEeC--CeeEEEEEEeCCCcc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----------------YVATLGVEVHPLVFHTN--RGAIRFNVWDTAGQE   69 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----------------~~~~~g~t~~~~~~~~~--~~~~~~~i~Dt~g~~   69 (385)
                      +..+|+++|+.++|||||+++|+.......                .....+.|.........  .....++++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            357899999999999999999885432110                11123344444444444  678999999999998


Q ss_pred             ccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHH---HH-HHHHhc----
Q psy125           70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK---SI-VFHRKK----  141 (385)
Q Consensus        70 ~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~---~~-~~~~~~----  141 (385)
                      ++.......+..+|++|+|+|+.+....+. ...+..+..  .++|+++++||+|+...+....   +. .+.+..    
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~  158 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE--LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG  158 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH--TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             ceeecccceecccccceeeeeccccccccc-ccccccccc--cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence            887777778899999999999987644332 222333322  5788999999999974332222   22 122222    


Q ss_pred             --CCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          142 --NLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       142 --~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                        ..+++++|+.+|.|+.+++..|.+.++
T Consensus       159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  159 EEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             TSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             cccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence              347999999999999999999988753

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01890 LepA LepA subfamily

Probab=99.71  E-value=2.7e-17  Score=137.87  Aligned_cols=112  Identities=16%  Similarity=0.232  Sum_probs=90.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCc-------ccccccc------ceeeEEEEEEEEe-----CCeeEEEEEeeCCCccccC
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGE-------FEKKYVA------TLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEKFG  287 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~~  287 (385)
                      +|+++|.++||||+|+++++...       +...+.+      +.|.++....+.+     ++..+.+.+|||||++.|.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            58999999999999999998531       2223333      3355665554433     5677889999999999999


Q ss_pred             cccccccccCcEEEEEEeCCChhhhhh---------------------------------------------hheecccc
Q psy125          288 GLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAKS  322 (385)
Q Consensus       288 ~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~  322 (385)
                      ..+..+++++|++|+|||++++.+++.                                             |+++||++
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  161 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKT  161 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccC
Confidence            999999999999999999998755443                                             57899999


Q ss_pred             CCCchHHHHHHHHHH
Q psy125          323 NYNFEKPFLWLARKL  337 (385)
Q Consensus       323 ~~~v~~~f~~l~~~i  337 (385)
                      |.||+++|.+|++.+
T Consensus       162 g~gi~~l~~~l~~~~  176 (179)
T cd01890         162 GLGVEDLLEAIVERI  176 (179)
T ss_pred             CCCHHHHHHHHHhhC
Confidence            999999999999875

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.71  E-value=3.9e-16  Score=155.92  Aligned_cols=154  Identities=16%  Similarity=0.153  Sum_probs=117.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc----------hh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL----------RD   76 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~----------~~   76 (385)
                      |+.++|+++|++|||||||+|++.+...  .+.+.+|+|++.+......++..+.++||||...+...          ..
T Consensus         1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~   78 (772)
T PRK09554          1 MKKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (772)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence            3568999999999999999999765443  46778999999988888888899999999998654321          12


Q ss_pred             hhh--ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh-hhHHHHHHHHhcCCeEEEEcCCCC
Q psy125           77 GYY--IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK-VKAKSIVFHRKKNLQYYDISAKSN  153 (385)
Q Consensus        77 ~~~--~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~  153 (385)
                      .++  ..+|++++|+|+++.+..   ..+..++.+  .++|+++++||+|+.+++ .......+.+..+.+++++|+.++
T Consensus        79 ~~l~~~~aD~vI~VvDat~ler~---l~l~~ql~e--~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         79 HYILSGDADLLINVVDASNLERN---LYLTLQLLE--LGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HHHhccCCCEEEEEecCCcchhh---HHHHHHHHH--cCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecC
Confidence            232  478999999999885432   223334433  478999999999986432 233445566677889999999999


Q ss_pred             CChHHHHHHHHHHH
Q psy125          154 YNFEKPFLWLARKL  167 (385)
Q Consensus       154 ~gi~~l~~~i~~~l  167 (385)
                      .|+++++..+....
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999888765

>KOG1673|consensus

Probab=99.70  E-value=2.4e-16  Score=120.72  Aligned_cols=162  Identities=25%  Similarity=0.400  Sum_probs=137.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      -++||.++|++..|||||+-.++++.+...+..+.|++.-.+...+.+..+.+.+||.+|++++..+..-...++-+++|
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999888877777788999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcch-------hhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR-------KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~-------~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      +||++.+..+..+..|+.+.++.....--+++++|.|+.-.       ....+...+++......+.+|+.+..++++.|
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF  178 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF  178 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence            99999999999999999988774333334688999996321       12334556777778899999999999999999


Q ss_pred             HHHHHHHhc
Q psy125          161 LWLARKLIG  169 (385)
Q Consensus       161 ~~i~~~l~~  169 (385)
                      ..+...+..
T Consensus       179 K~vlAklFn  187 (205)
T KOG1673|consen  179 KIVLAKLFN  187 (205)
T ss_pred             HHHHHHHhC
Confidence            877766654

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.70  E-value=8.5e-17  Score=139.44  Aligned_cols=118  Identities=36%  Similarity=0.584  Sum_probs=107.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|..||||||+++++..+.|...+.++++..+...........+++.+|||+||++|+.+++.|+++++++++|
T Consensus         5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~   84 (219)
T COG1100           5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV   84 (219)
T ss_pred             eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence            38999999999999999999999999999999998888777777666688899999999999999999999999999999


Q ss_pred             EeCCChhhhhh----------------------------------------------------------------hheec
Q psy125          304 FDVTSRITYKN----------------------------------------------------------------YYDIS  319 (385)
Q Consensus       304 ~d~~~~~s~~~----------------------------------------------------------------~~e~S  319 (385)
                      ||++++.++.+                                                                +++||
T Consensus        85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  164 (219)
T COG1100          85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETS  164 (219)
T ss_pred             EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEee
Confidence            99999666655                                                                79999


Q ss_pred             cc--cCCCchHHHHHHHHHHhcCC
Q psy125          320 AK--SNYNFEKPFLWLARKLIGDP  341 (385)
Q Consensus       320 ak--~~~~v~~~f~~l~~~i~~~~  341 (385)
                      |+  .+.||+++|..+++.+....
T Consensus       165 ~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         165 AKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             cccCCCcCHHHHHHHHHHHHHHhh
Confidence            99  99999999999999997654

>PRK12289 GTPase RsgA; Reviewed

Probab=99.70  E-value=4.1e-16  Score=142.03  Aligned_cols=151  Identities=19%  Similarity=0.201  Sum_probs=108.0

Q ss_pred             cchhhhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCC
Q psy125           73 GLRDGYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAK  151 (385)
Q Consensus        73 ~~~~~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~  151 (385)
                      .+.+..+.++|.+++|+|+.++. ....+..|+....  ..++|+++|+||+|+........+...+...++.++.+||.
T Consensus        81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~--~~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~  158 (352)
T PRK12289         81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE--STGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISVE  158 (352)
T ss_pred             ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH--HCCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEcC
Confidence            34455688999999999998765 3334456655443  25899999999999975443344444555667899999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEEC
Q psy125          152 SNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVG  231 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G  231 (385)
                      ++.|+++++..+...                                                           .++++|
T Consensus       159 tg~GI~eL~~~L~~k-----------------------------------------------------------i~v~iG  179 (352)
T PRK12289        159 TGIGLEALLEQLRNK-----------------------------------------------------------ITVVAG  179 (352)
T ss_pred             CCCCHHHHhhhhccc-----------------------------------------------------------eEEEEe
Confidence            999998776654321                                                           279999


Q ss_pred             CCCCCHHHHHHHHhcCcccccccccee-------eEEEEEEEEeCCeeEEEEEeeCCCccccCc
Q psy125          232 DGGTGKTTFVKRHLTGEFEKKYVATLG-------VEVHPLVFHTNRGAIRFNVWDTAGQEKFGG  288 (385)
Q Consensus       232 ~~~vgks~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~  288 (385)
                      .+|||||||+|.++... ...+....|       +|.....+.+.+++   .|+||||...+.-
T Consensus       180 ~SgVGKSSLIN~L~~~~-~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~~~l  239 (352)
T PRK12289        180 PSGVGKSSLINRLIPDV-ELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQPDL  239 (352)
T ss_pred             CCCCCHHHHHHHHcCcc-ccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCcccccc
Confidence            99999999999987432 222233333       78888777776544   6999999866543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.69  E-value=6e-16  Score=140.74  Aligned_cols=157  Identities=17%  Similarity=0.163  Sum_probs=118.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc-----------hh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL-----------RD   76 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~-----------~~   76 (385)
                      ..+||+|+|.||+|||||+|+| .+.....+++.+|+|++.......+++..+.++||.|..+....           ..
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~i-lgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAI-LGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHh-ccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            4699999999999999999994 55667788999999999999999999999999999997532221           23


Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh--hhHHH----H-HHHHhcCCeEEEEc
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--VKAKS----I-VFHRKKNLQYYDIS  149 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--~~~~~----~-~~~~~~~~~~~~~S  149 (385)
                      ..+..++++++|+|++.+.+.+.. .....+.  ..+.++++++||.|+....  ...+.    . .+......+.+.+|
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~-~ia~~i~--~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS  332 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDL-RIAGLIE--EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS  332 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHH-HHHHHHH--HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence            345789999999999988665542 2222222  2688999999999986541  11111    1 12223345899999


Q ss_pred             CCCCCChHHHHHHHHHHHh
Q psy125          150 AKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~  168 (385)
                      |+++.++.+++..+.....
T Consensus       333 A~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         333 ALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             ecCCCChHHHHHHHHHHHH
Confidence            9999999999999887653

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.69  E-value=1e-15  Score=146.35  Aligned_cols=157  Identities=17%  Similarity=0.161  Sum_probs=112.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc-----------hh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL-----------RD   76 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~-----------~~   76 (385)
                      ..++|+++|++|+|||||+|+|++.. .....+..|+|++.........+..+.+|||||..+....           ..
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGEE-RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCC-ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            46899999999999999999977654 2334567788888876666556677899999997433221           12


Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHH-----HHhcCCeEEEEcCC
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVF-----HRKKNLQYYDISAK  151 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~  151 (385)
                      .++..+|++|+|+|+.++.+.+.. .+...+..  .+.|+++++||+|+.......+....     ......+++++||+
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~-~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~  327 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDL-RIAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISAL  327 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCC
Confidence            356789999999999987665543 22222222  47899999999998743322222111     11234689999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q psy125          152 SNYNFEKPFLWLARKLI  168 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~  168 (385)
                      ++.|+++++..+.+...
T Consensus       328 ~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        328 TGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCCHHHHHHHHHHHHH
Confidence            99999999999887653

>cd04155 Arl3 Arl3 subfamily

Probab=99.69  E-value=7.3e-17  Score=134.48  Aligned_cols=109  Identities=20%  Similarity=0.455  Sum_probs=90.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..++++++|.+|||||++++++....+ ..+.++.|.+....  ..+  +..+.+|||+|+.++...+..++++++++++
T Consensus        13 ~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~~~i--~~~--~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~   87 (173)
T cd04155          13 EEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNIKTV--QSD--GFKLNVWDIGGQRAIRPYWRNYFENTDCLIY   87 (173)
T ss_pred             CccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcceEEE--EEC--CEEEEEEECCCCHHHHHHHHHHhcCCCEEEE
Confidence            358999999999999999999876554 34667777554433  333  4678999999999998888889999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||+++..+|..                                                    +++|||++|.|++++|
T Consensus        88 v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~  167 (173)
T cd04155          88 VIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGM  167 (173)
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHH
Confidence            999999877743                                                    4689999999999999


Q ss_pred             HHHHHH
Q psy125          331 LWLARK  336 (385)
Q Consensus       331 ~~l~~~  336 (385)
                      .||+++
T Consensus       168 ~~l~~~  173 (173)
T cd04155         168 NWVCKN  173 (173)
T ss_pred             HHHhcC
Confidence            999863

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.69  E-value=1.1e-16  Score=131.11  Aligned_cols=105  Identities=28%  Similarity=0.527  Sum_probs=92.1

Q ss_pred             EEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeC
Q psy125          227 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV  306 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~  306 (385)
                      ++++|++|||||++++++....|...+.++.+.+...  +..  +.+.+.+|||||+.++..++..+++++|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            7899999999999999999999998888888766543  222  347799999999999999999999999999999999


Q ss_pred             CChhhhhh----------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          307 TSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       307 ~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      +++.+|..                                                    ++++||++|.||+++|.+|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  157 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI  157 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence            99888753                                                    68999999999999999987


Q ss_pred             H
Q psy125          335 R  335 (385)
Q Consensus       335 ~  335 (385)
                      +
T Consensus       158 ~  158 (159)
T cd04159         158 K  158 (159)
T ss_pred             h
Confidence            5

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd01855 YqeH YqeH

Probab=99.69  E-value=6.3e-16  Score=130.67  Aligned_cols=151  Identities=17%  Similarity=0.146  Sum_probs=106.6

Q ss_pred             cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh-HHHHHHH-----HhcC--
Q psy125           71 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-AKSIVFH-----RKKN--  142 (385)
Q Consensus        71 ~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~-~~~~~~~-----~~~~--  142 (385)
                      ++.....++.++|++++|+|+.++...     |...+.....+.|+++|+||+|+...... .....+.     ...+  
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   98 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK   98 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence            355667788999999999999876421     22222222357899999999998643321 1122222     2222  


Q ss_pred             -CeEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCC
Q psy125          143 -LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMD  221 (385)
Q Consensus       143 -~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  221 (385)
                       ..++.+||+++.|+++++..|...+..                                                    
T Consensus        99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~----------------------------------------------------  126 (190)
T cd01855          99 PKDVILISAKKGWGVEELINAIKKLAKK----------------------------------------------------  126 (190)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhhc----------------------------------------------------
Confidence             268999999999999999888776521                                                    


Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCcc-------ccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEF-------EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ  283 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~  283 (385)
                        ...++++|.+||||||++|.++....       ....+..+|+|.....+.++.   .+.|+||||.
T Consensus       127 --~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG~  190 (190)
T cd01855         127 --GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI  190 (190)
T ss_pred             --CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcCC
Confidence              14699999999999999999885432       124556678999988887764   3689999994

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.68  E-value=1.5e-15  Score=147.48  Aligned_cols=153  Identities=14%  Similarity=0.173  Sum_probs=105.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      .+.++|+++|+.|+|||||+++|.+..+.....  .|.|........... ...+.+|||||++.+..++...+..+|++
T Consensus        85 ~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~--~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        85 ERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEA--GGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccccC--CceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            456899999999999999999987766544332  344444333333222 23789999999999888888888999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHh-------c--CCeEEEEcCCCCCCh
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK-------K--NLQYYDISAKSNYNF  156 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-------~--~~~~~~~Sa~~~~gi  156 (385)
                      ++|+|+++....+....+ ....  ..+.|+++++||+|+..... .........       .  ..+++++||++|.|+
T Consensus       163 ILVVda~dgv~~qT~e~i-~~~~--~~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI  238 (587)
T TIGR00487       163 VLVVAADDGVMPQTIEAI-SHAK--AANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI  238 (587)
T ss_pred             EEEEECCCCCCHhHHHHH-HHHH--HcCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence            999999875433322222 2221  25789999999999854221 111111111       1  247899999999999


Q ss_pred             HHHHHHHHH
Q psy125          157 EKPFLWLAR  165 (385)
Q Consensus       157 ~~l~~~i~~  165 (385)
                      ++++.+|..
T Consensus       239 ~eLl~~I~~  247 (587)
T TIGR00487       239 DELLDMILL  247 (587)
T ss_pred             HHHHHhhhh
Confidence            999998864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>KOG0070|consensus

Probab=99.68  E-value=1.5e-16  Score=126.86  Aligned_cols=116  Identities=28%  Similarity=0.444  Sum_probs=103.1

Q ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcE
Q psy125          220 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC  299 (385)
Q Consensus       220 ~~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~  299 (385)
                      .+..+.+|+++|-.++||||++.++-.+++... .||+|.......+    +.+.+.+||..||++++.+|..||+++++
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t~~   87 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNTQG   87 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCCcE
Confidence            344678999999999999999999888887666 8999877666555    37789999999999999999999999999


Q ss_pred             EEEEEeCCChhhhhh----------------------------------------------------hheeccccCCCch
Q psy125          300 AIIMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFE  327 (385)
Q Consensus       300 ~ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~  327 (385)
                      +|||.|.+|++.+.+                                                    +..|+|.+|.|+.
T Consensus        88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~GL~  167 (181)
T KOG0070|consen   88 LIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEGLY  167 (181)
T ss_pred             EEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeeccccccccHH
Confidence            999999999999988                                                    7889999999999


Q ss_pred             HHHHHHHHHHhcC
Q psy125          328 KPFLWLARKLIGD  340 (385)
Q Consensus       328 ~~f~~l~~~i~~~  340 (385)
                      |.++|+...+...
T Consensus       168 egl~wl~~~~~~~  180 (181)
T KOG0070|consen  168 EGLDWLSNNLKKR  180 (181)
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999988653

>KOG0074|consensus

Probab=99.68  E-value=4.4e-16  Score=117.41  Aligned_cols=158  Identities=22%  Similarity=0.336  Sum_probs=122.8

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      ...+.+||+++|-.++|||||++. +.+.......|+-|.....+.+.   +.+++++||.+|+...+..|..|+.+.|+
T Consensus        13 ~t~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~~---g~f~LnvwDiGGqr~IRpyWsNYyenvd~   88 (185)
T KOG0074|consen   13 RTRREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEYD---GTFHLNVWDIGGQRGIRPYWSNYYENVDG   88 (185)
T ss_pred             CCcceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEeec---CcEEEEEEecCCccccchhhhhhhhccce
Confidence            346789999999999999999999 66677777788888776666543   67999999999999999999999999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHH-----HHHHhcCCeEEEEcCCCCCChH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~  157 (385)
                      +|+|+|.++...|+++...+.++..  .....|+.+..||.|+.......+..     ...+.+...+-++|+.++.|+.
T Consensus        89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~  168 (185)
T KOG0074|consen   89 LIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGST  168 (185)
T ss_pred             EEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCcc
Confidence            9999999998888877766666655  33578899999999986543322221     1223344577889999999887


Q ss_pred             HHHHHHHHH
Q psy125          158 KPFLWLARK  166 (385)
Q Consensus       158 ~l~~~i~~~  166 (385)
                      .-..++++.
T Consensus       169 dg~~wv~sn  177 (185)
T KOG0074|consen  169 DGSDWVQSN  177 (185)
T ss_pred             CcchhhhcC
Confidence            766665543

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.67  E-value=1.2e-15  Score=151.52  Aligned_cols=154  Identities=14%  Similarity=0.180  Sum_probs=108.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+.|+|+|+.++|||||+++|..+.+...  ...|.|.......+.+.+..+++|||||+..|..++...+..+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            4678999999999999999999876555433  23455555444444444578999999999999888888889999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHH---HHHhc--CCeEEEEcCCCCCChHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIV---FHRKK--NLQYYDISAKSNYNFEK  158 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~---~~~~~--~~~~~~~Sa~~~~gi~~  158 (385)
                      +|+|+++....+....|. ..  ...+.|+++++||+|+.....   ..++..   +....  ..+++++||++|.|+++
T Consensus       366 LVVdAddGv~~qT~e~i~-~a--~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~e  442 (787)
T PRK05306        366 LVVAADDGVMPQTIEAIN-HA--KAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDE  442 (787)
T ss_pred             EEEECCCCCCHhHHHHHH-HH--HhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchH
Confidence            999998854332222221 11  125789999999999864221   111111   11111  25799999999999999


Q ss_pred             HHHHHHH
Q psy125          159 PFLWLAR  165 (385)
Q Consensus       159 l~~~i~~  165 (385)
                      ++..|..
T Consensus       443 Lle~I~~  449 (787)
T PRK05306        443 LLEAILL  449 (787)
T ss_pred             HHHhhhh
Confidence            9988865

>cd01858 NGP_1 NGP-1

Probab=99.67  E-value=5.4e-15  Score=120.89  Aligned_cols=153  Identities=12%  Similarity=0.059  Sum_probs=102.8

Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcC-CeEEEEcCCCCCC
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN-LQYYDISAKSNYN  155 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  155 (385)
                      ..+.++|++++|+|++++..... ..+...+.....+.|+++|+||+|+........+...+.... ...+.+|++++.|
T Consensus         4 ~~l~~aD~il~VvD~~~p~~~~~-~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~   82 (157)
T cd01858           4 KVIDSSDVVIQVLDARDPMGTRC-KHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG   82 (157)
T ss_pred             HhhhhCCEEEEEEECCCCccccC-HHHHHHHHhccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeecccccc
Confidence            34678999999999998743321 122222222224589999999999975543333333333322 2357789999999


Q ss_pred             hHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCC
Q psy125          156 FEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGT  235 (385)
Q Consensus       156 i~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~v  235 (385)
                      +++++..+...+...                                                 ......+++++|.+||
T Consensus        83 ~~~L~~~l~~~~~~~-------------------------------------------------~~~~~~~v~~~G~~nv  113 (157)
T cd01858          83 KGSLIQLLRQFSKLH-------------------------------------------------SDKKQISVGFIGYPNV  113 (157)
T ss_pred             HHHHHHHHHHHHhhh-------------------------------------------------ccccceEEEEEeCCCC
Confidence            998888776543100                                                 0012367899999999


Q ss_pred             CHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125          236 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ  283 (385)
Q Consensus       236 gks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~  283 (385)
                      ||||++|+++.. -.....++.|+|.....+....+   +.++||||.
T Consensus       114 GKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~---~~liDtPGi  157 (157)
T cd01858         114 GKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKR---IYLIDCPGV  157 (157)
T ss_pred             ChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCC---EEEEECcCC
Confidence            999999997754 34566778888888777665433   579999994

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=99.67  E-value=1.4e-15  Score=126.07  Aligned_cols=160  Identities=19%  Similarity=0.148  Sum_probs=110.4

Q ss_pred             cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCC
Q psy125           73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS  152 (385)
Q Consensus        73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (385)
                      ......+.++|.+++|+|++++...... .+..    ...+.|.++|+||+|+..........+++......++.+|+++
T Consensus        11 ~~~~~~i~~aD~il~v~D~~~~~~~~~~-~i~~----~~~~k~~ilVlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~   85 (171)
T cd01856          11 RQIKEKLKLVDLVIEVRDARIPLSSRNP-LLEK----ILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKS   85 (171)
T ss_pred             HHHHHHHhhCCEEEEEeeccCccCcCCh-hhHh----HhcCCCEEEEEehhhcCChHHHHHHHHHHHhcCCeEEEEECCC
Confidence            3445677899999999999876543321 1222    2246789999999999654333233344444556789999999


Q ss_pred             CCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECC
Q psy125          153 NYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGD  232 (385)
Q Consensus       153 ~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~  232 (385)
                      +.|+++++..+...+...                              .+..            ........++++++|.
T Consensus        86 ~~gi~~L~~~l~~~l~~~------------------------------~~~~------------~~~~~~~~~~~~~~G~  123 (171)
T cd01856          86 GKGVKKLLKAAKKLLKDI------------------------------EKLK------------AKGLLPRGIRAMVVGI  123 (171)
T ss_pred             cccHHHHHHHHHHHHHHH------------------------------hhhh------------hcccCCCCeEEEEECC
Confidence            999999888887765220                              0000            0011123478999999


Q ss_pred             CCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125          233 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ  283 (385)
Q Consensus       233 ~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~  283 (385)
                      +|||||++++++....+. .+.+..|+|+....+.++   ..+.+|||||.
T Consensus       124 ~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         124 PNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            999999999998876653 556677888888777765   23689999995

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.67  E-value=2.3e-15  Score=120.66  Aligned_cols=133  Identities=16%  Similarity=0.144  Sum_probs=97.4

Q ss_pred             hhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCC
Q psy125           76 DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYN  155 (385)
Q Consensus        76 ~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (385)
                      ...+..+|++++|+|++++.+.... .+...+.....++|+++++||+|+..+.....+...+...+..++.+|+.++.+
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~-~l~~~l~~~~~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~   84 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPP-DLERYVKEVDPRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA   84 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCH-HHHHHHHhccCCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence            4466889999999999988765421 222222222257899999999999665444444555555667889999876542


Q ss_pred             hHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCC
Q psy125          156 FEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGT  235 (385)
Q Consensus       156 i~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~v  235 (385)
                                                                                            +++++|.+||
T Consensus        85 ----------------------------------------------------------------------~~~~~G~~~v   94 (141)
T cd01857          85 ----------------------------------------------------------------------TIGLVGYPNV   94 (141)
T ss_pred             ----------------------------------------------------------------------EEEEECCCCC
Confidence                                                                                  4899999999


Q ss_pred             CHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125          236 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ  283 (385)
Q Consensus       236 gks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~  283 (385)
                      |||+++|+++...+. ......|.+.+...+.+++   .+.||||||.
T Consensus        95 GKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          95 GKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             CHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            999999998876654 4566677888888777765   3689999996

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=99.67  E-value=2.4e-15  Score=137.10  Aligned_cols=146  Identities=16%  Similarity=0.221  Sum_probs=107.8

Q ss_pred             hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHHhcCCeEEEEcCCCCC
Q psy125           78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKSNY  154 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~~  154 (385)
                      +..++|.+++|+++....++..+..|+.....  .++|.++|+||+|+.....   .......+...+.+++.+||+++.
T Consensus       117 iaANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~--~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~  194 (347)
T PRK12288        117 IAANIDQIVIVSAVLPELSLNIIDRYLVACET--LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE  194 (347)
T ss_pred             EEEEccEEEEEEeCCCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence            35779999999999888888888888765432  5789999999999965432   233334455667899999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCC
Q psy125          155 NFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGG  234 (385)
Q Consensus       155 gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~  234 (385)
                      |+++++..|...                                                           -++++|.+|
T Consensus       195 GideL~~~L~~k-----------------------------------------------------------i~~~vG~sg  215 (347)
T PRK12288        195 GLEELEAALTGR-----------------------------------------------------------ISIFVGQSG  215 (347)
T ss_pred             CHHHHHHHHhhC-----------------------------------------------------------CEEEECCCC
Confidence            999888765432                                                           168999999


Q ss_pred             CCHHHHHHHHhcCcc------ccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125          235 TGKTTFVKRHLTGEF------EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG  287 (385)
Q Consensus       235 vgks~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  287 (385)
                      ||||||+|.++....      ........++|.....+.+.+++   .|+||||...+.
T Consensus       216 VGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~~  271 (347)
T PRK12288        216 VGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREFG  271 (347)
T ss_pred             CCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCccc
Confidence            999999999885432      22222333467777777776544   499999988765

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.66  E-value=1.9e-15  Score=147.67  Aligned_cols=156  Identities=14%  Similarity=0.176  Sum_probs=111.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC--C-----CCcc------cccceeeeEEEEEEe-----CCeeEEEEEEeCCCcccc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGE--F-----EKKY------VATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~--~-----~~~~------~~~~g~t~~~~~~~~-----~~~~~~~~i~Dt~g~~~~   71 (385)
                      -+|+|+|+.++|||||+.+|+...  .     ...+      ....|.|........     ++..+.+++|||||+.++
T Consensus         8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            489999999999999999987631  1     1111      123466655443333     344789999999999998


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEEEE
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYYDI  148 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~  148 (385)
                      ...+..++..+|++|+|+|+++....+....|....   ..++|+++|+||+|+..........++....+.   .++.+
T Consensus        88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~---~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~i  164 (600)
T PRK05433         88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL---ENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLV  164 (600)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEE
Confidence            888888899999999999999876555444444332   247899999999998643222112223222233   48999


Q ss_pred             cCCCCCChHHHHHHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      ||+++.|+++++.+|...+.
T Consensus       165 SAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        165 SAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             ecCCCCCHHHHHHHHHHhCc
Confidence            99999999999999988753

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.66  E-value=1.2e-15  Score=153.11  Aligned_cols=158  Identities=18%  Similarity=0.165  Sum_probs=109.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc----------c-hh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----------L-RD   76 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----------~-~~   76 (385)
                      ..++|+++|++|||||||+|+|++... ..+.+.+|+|++........++..+.+|||||..+...          + ..
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence            458999999999999999999877653 23445677777765544444555677999999642111          1 12


Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCC
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAK  151 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~  151 (385)
                      ..+..+|++++|+|+++..+.+... +...+..  .++|+++|+||+|+.+............     ....+++.+||+
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk  604 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK  604 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence            3367899999999999887766543 3333322  5789999999999865332222211111     123467899999


Q ss_pred             CCCChHHHHHHHHHHHhc
Q psy125          152 SNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~~  169 (385)
                      ++.|+++++..+.+.+..
T Consensus       605 tg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        605 TGWHTNRLAPAMQEALES  622 (712)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998754

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.66  E-value=1.5e-15  Score=144.30  Aligned_cols=154  Identities=18%  Similarity=0.126  Sum_probs=107.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCC-----------------------------cccccceeeeEEEEEEeCCee
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEK-----------------------------KYVATLGVEVHPLVFHTNRGA   57 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~-----------------------------~~~~~~g~t~~~~~~~~~~~~   57 (385)
                      .+.++|+++|+.++|||||+++|+...-.-                             ......|+|++........+.
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~   83 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK   83 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence            467999999999999999999987421110                             012257889999888888889


Q ss_pred             EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh------h
Q psy125           58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV------K  131 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~------~  131 (385)
                      ..+.+|||||++++.......+.++|++++|+|+++..++.....+...+.......++++++||+|+.....      .
T Consensus        84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~  163 (425)
T PRK12317         84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK  163 (425)
T ss_pred             eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence            9999999999987766555557899999999999874223222222222223323346899999999864111      1


Q ss_pred             HHHHHHHHhcC-----CeEEEEcCCCCCChHHHH
Q psy125          132 AKSIVFHRKKN-----LQYYDISAKSNYNFEKPF  160 (385)
Q Consensus       132 ~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~  160 (385)
                      .+...+....+     .+++++||+++.|+++..
T Consensus       164 ~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        164 EEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            23333433333     478999999999998643

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.65  E-value=2.3e-15  Score=148.29  Aligned_cols=156  Identities=18%  Similarity=0.212  Sum_probs=107.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEE----EEEeCCeeEEEEEEeCCCccccccchhhhhccC
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL----VFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQG   82 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~----~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~   82 (385)
                      .+...|+|+|+.|+|||||+++|....+.....  .|.|....    ..........+.+|||||+..+..++..++..+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~--~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~a  319 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEA--GGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVT  319 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccC--CccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHC
Confidence            356799999999999999999987655443221  23332211    122223468899999999998888888888999


Q ss_pred             cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh---HHHHHH---HHhc--CCeEEEEcCCCCC
Q psy125           83 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK---AKSIVF---HRKK--NLQYYDISAKSNY  154 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~---~~~~~~---~~~~--~~~~~~~Sa~~~~  154 (385)
                      |++|+|+|+++....+....+ ..+.  ..+.|+++++||+|+......   ..+..+   ....  ..+++++||++|.
T Consensus       320 DiaILVVDA~dGv~~QT~E~I-~~~k--~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~  396 (742)
T CHL00189        320 DIAILIIAADDGVKPQTIEAI-NYIQ--AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGT  396 (742)
T ss_pred             CEEEEEEECcCCCChhhHHHH-HHHH--hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCC
Confidence            999999999885443332222 2222  257899999999998653211   111111   1111  2589999999999


Q ss_pred             ChHHHHHHHHHHH
Q psy125          155 NFEKPFLWLARKL  167 (385)
Q Consensus       155 gi~~l~~~i~~~l  167 (385)
                      |+++++..|....
T Consensus       397 GIdeLle~I~~l~  409 (742)
T CHL00189        397 NIDKLLETILLLA  409 (742)
T ss_pred             CHHHHHHhhhhhh
Confidence            9999999887653

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.65  E-value=2.4e-15  Score=146.91  Aligned_cols=145  Identities=15%  Similarity=0.124  Sum_probs=107.0

Q ss_pred             cCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc------hhhhh--ccCcEEEE
Q psy125           16 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL------RDGYY--IQGQCAII   87 (385)
Q Consensus        16 G~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~------~~~~~--~~~d~ill   87 (385)
                      |.+|||||||+|++.+...  .+.+.+|+|.+........++..+.+|||||+..+...      ...++  .++|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ--TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC--eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999776543  45567888888776665555677899999998765443      23333  47899999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      |+|.++.+.   ...+..++.+  .+.|+++++||+|+.++.. ..+...+.+..+.+++++||+++.|++++++.+.+.
T Consensus        79 VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~  153 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA  153 (591)
T ss_pred             EecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            999987432   1233333332  4789999999999864332 233455666677899999999999999999999876


Q ss_pred             H
Q psy125          167 L  167 (385)
Q Consensus       167 l  167 (385)
                      .
T Consensus       154 ~  154 (591)
T TIGR00437       154 I  154 (591)
T ss_pred             h
Confidence            4

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.65  E-value=3.7e-15  Score=129.44  Aligned_cols=150  Identities=15%  Similarity=0.068  Sum_probs=100.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc-------chhhhhccCc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-------LRDGYYIQGQ   83 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-------~~~~~~~~~d   83 (385)
                      +|+|+|++|+|||||+|+|.+...  .....++.|..+........+..+.+|||||......       .....++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~--~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKS--EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc--cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            799999999999999999776432  2233445555555554445678899999999754321       2234678999


Q ss_pred             EEEEEEeCCChhh-hhcHHHHH----------------------------------------------------------
Q psy125           84 CAIIMFDVTSRIT-YKNVPNWH----------------------------------------------------------  104 (385)
Q Consensus        84 ~illV~d~~~~~~-~~~~~~~~----------------------------------------------------------  104 (385)
                      ++++|+|++++.. ...+...+                                                          
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            9999999987542 11111111                                                          


Q ss_pred             --------HHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125          105 --------RDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       105 --------~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                              ..+.......|+++|+||+|+.......   .+..  ...++++||+++.|+++++..|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~---~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELD---LLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCHHHHH---HHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                    1111111246889999999986543222   2322  34689999999999999999998865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd00880 Era_like Era (E

Probab=99.65  E-value=2.9e-15  Score=122.65  Aligned_cols=149  Identities=18%  Similarity=0.207  Sum_probs=101.9

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCcccccc-------chhhhhccCcEE
Q psy125           14 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGG-------LRDGYYIQGQCA   85 (385)
Q Consensus        14 lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~-------~~~~~~~~~d~i   85 (385)
                      ++|+.|+|||||+|++++.... ......+.+........... ...+.+|||||......       ....++.++|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVA-IVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCcccc-ccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5899999999999997664332 23334444443333333222 67899999999865443       233467899999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHH-----HHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS-----IVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      ++|+|..+........ +.....  ..+.|+++|+||+|+.........     .........+++.+|++++.|+++++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~  156 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLR--ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR  156 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHH--hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence            9999999876654432 232322  258899999999998765433322     12233445689999999999999999


Q ss_pred             HHHHHH
Q psy125          161 LWLARK  166 (385)
Q Consensus       161 ~~i~~~  166 (385)
                      ..+.+.
T Consensus       157 ~~l~~~  162 (163)
T cd00880         157 EALIEA  162 (163)
T ss_pred             HHHHhh
Confidence            988764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.65  E-value=9.9e-16  Score=131.21  Aligned_cols=146  Identities=19%  Similarity=0.195  Sum_probs=98.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCc-----------------------------ccccceeeeEEEEEEeCCeeEEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKK-----------------------------YVATLGVEVHPLVFHTNRGAIRFN   61 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~-----------------------------~~~~~g~t~~~~~~~~~~~~~~~~   61 (385)
                      ||+|+|++|+|||||+++|+...-.-.                             .....|+|++.......+++..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            689999999999999999875432111                             011267777777777777888999


Q ss_pred             EEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh------hHHHH
Q psy125           62 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV------KAKSI  135 (385)
Q Consensus        62 i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~------~~~~~  135 (385)
                      +|||||+..+.......+..+|++|+|+|+++....+.  .....+.......++++|+||+|+.....      ..+..
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~--~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~  158 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQT--RRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL  158 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhH--HHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence            99999998765555566789999999999987532221  11112222222345778999999864211      12223


Q ss_pred             HHHHhcC---CeEEEEcCCCCCChHH
Q psy125          136 VFHRKKN---LQYYDISAKSNYNFEK  158 (385)
Q Consensus       136 ~~~~~~~---~~~~~~Sa~~~~gi~~  158 (385)
                      .+....+   .+++++||+++.|+.+
T Consensus       159 ~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         159 AFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            3333333   3589999999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.64  E-value=1.2e-14  Score=118.56  Aligned_cols=155  Identities=13%  Similarity=0.103  Sum_probs=108.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc----------ccccchhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE----------KFGGLRDG   77 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~----------~~~~~~~~   77 (385)
                      ...-|+++|++|||||||+|+|++.....-++.++|.|+......++.+   +.++|.||.-          ........
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            3468999999999999999998887777888999999999999887776   7889999942          12223334


Q ss_pred             hhc---cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHH-HHHH----HhcCCe--EEE
Q psy125           78 YYI---QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS-IVFH----RKKNLQ--YYD  147 (385)
Q Consensus        78 ~~~---~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~-~~~~----~~~~~~--~~~  147 (385)
                      |+.   +-.++++++|+..+..-.+. ..+..+..  .++|+++++||+|.......... ....    ......  +..
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~--~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~  176 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLE--LGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVL  176 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEE
Confidence            443   34567778888766433221 23333333  58999999999998764433221 1111    112222  778


Q ss_pred             EcCCCCCChHHHHHHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      .|+.++.|++++...|...+.
T Consensus       177 ~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         177 FSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             EecccccCHHHHHHHHHHHhh
Confidence            899999999999999888763

>KOG3883|consensus

Probab=99.64  E-value=1.4e-14  Score=110.87  Aligned_cols=162  Identities=18%  Similarity=0.304  Sum_probs=125.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCc--ccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc-ccchhhhhccCcE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-GGLRDGYYIQGQC   84 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~--~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~-~~~~~~~~~~~d~   84 (385)
                      +..||+++|..++|||+++..++.++....  ..++...++....-...+..-.+.++||.|...+ ..+...|+.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            457999999999999999999888765433  3455554444444444445567899999998876 5677889999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      +++||+..++++|+.+..+..++.+.  ...+|+++++||+|+.+...  ......|+.......+++++.+....-+.|
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            99999999999998876655555543  24578999999999865433  334456777778899999999999999999


Q ss_pred             HHHHHHHhc
Q psy125          161 LWLARKLIG  169 (385)
Q Consensus       161 ~~i~~~l~~  169 (385)
                      ..++..+.+
T Consensus       168 ~~l~~rl~~  176 (198)
T KOG3883|consen  168 TYLASRLHQ  176 (198)
T ss_pred             HHHHHhccC
Confidence            999888654

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.64  E-value=2.5e-15  Score=117.25  Aligned_cols=134  Identities=19%  Similarity=0.229  Sum_probs=88.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc----ccccchhhhhccCcEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE----KFGGLRDGYYIQGQCAI   86 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~----~~~~~~~~~~~~~d~il   86 (385)
                      ||+|+|+.|||||||+++|.+....  +..|.            .-...=.++||||.-    .+.........++|+++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~~--~~KTq------------~i~~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEIR--YKKTQ------------AIEYYDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCCC--cCccc------------eeEecccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            8999999999999999996653321  11111            111122458999953    22222334456899999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc-chhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK-DRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      +|.|++++.+...     ..+.+. -+.|+|-|++|+|+. +.........+.+..+. .+|.+|+.++.|+++++.+|.
T Consensus        69 ll~dat~~~~~~p-----P~fa~~-f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   69 LLQDATEPRSVFP-----PGFASM-FNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             EEecCCCCCccCC-----chhhcc-cCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            9999998754321     112222 268999999999998 23333344445554444 789999999999999998764

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.64  E-value=2.4e-16  Score=126.87  Aligned_cols=94  Identities=21%  Similarity=0.264  Sum_probs=74.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc-----ccCcccccccccCcEE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE-----KFGGLRDGYYIQGQCA  300 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----~~~~~~~~~~~~~~~~  300 (385)
                      ||+++|.+|||||+|++++..+.+  .+.+|.+.++.       .     .+|||||+.     .+..+.. .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t~~~~~~-------~-----~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKTQAVEYN-------D-----GAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccceeEEEc-------C-----eeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            799999999999999999887655  24444433321       1     589999983     3444433 47899999


Q ss_pred             EEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHHH
Q psy125          301 IIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       301 ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |+|||++++.+|.+                                         |+++||++|.|++++|.+++
T Consensus        67 ilv~d~~~~~s~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  141 (142)
T TIGR02528        67 ALVQSATDPESRFPPGFASIFVKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN  141 (142)
T ss_pred             EEEecCCCCCcCCChhHHHhccCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence            99999999999876                                         78899999999999999875

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>KOG0075|consensus

Probab=99.64  E-value=1.5e-16  Score=120.82  Aligned_cols=110  Identities=23%  Similarity=0.468  Sum_probs=99.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      ++.+.++|-.++|||++.+....+.|.+...||.|......    +.+.+.+.+||.+||.+|+.+|..|+++++++++|
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~   95 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV   95 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence            47899999999999999999888899999999998766544    44778899999999999999999999999999999


Q ss_pred             EeCCChhhhhh----------------------------------------------------hheeccccCCCchHHHH
Q psy125          304 FDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       304 ~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      .|..|+..+.-                                                    ++.+|+|...|++.+.+
T Consensus        96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~~  175 (186)
T KOG0075|consen   96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITLD  175 (186)
T ss_pred             eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHHH
Confidence            99999887765                                                    89999999999999999


Q ss_pred             HHHHHH
Q psy125          332 WLARKL  337 (385)
Q Consensus       332 ~l~~~i  337 (385)
                      ||+++.
T Consensus       176 Wli~hs  181 (186)
T KOG0075|consen  176 WLIEHS  181 (186)
T ss_pred             HHHHHh
Confidence            999875

>KOG0076|consensus

Probab=99.64  E-value=7.8e-16  Score=120.57  Aligned_cols=158  Identities=23%  Similarity=0.404  Sum_probs=120.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCC--------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFE--------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYY   79 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~--------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~   79 (385)
                      ..+.|+|+|.-++|||||+.+ +...+.        ....++.|..    ...++-....+.+||.+|++..++++..|+
T Consensus        16 e~y~vlIlgldnAGKttfLe~-~Kt~~~~~~~~l~~~ki~~tvgLn----ig~i~v~~~~l~fwdlgGQe~lrSlw~~yY   90 (197)
T KOG0076|consen   16 EDYSVLILGLDNAGKTTFLEA-LKTDFSKAYGGLNPSKITPTVGLN----IGTIEVCNAPLSFWDLGGQESLRSLWKKYY   90 (197)
T ss_pred             hhhhheeeccccCCchhHHHH-HHHHHHhhhcCCCHHHeeccccee----ecceeeccceeEEEEcCChHHHHHHHHHHH
Confidence            458899999999999999986 322221        2233444433    344444577899999999999999999999


Q ss_pred             ccCcEEEEEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH------hcCCeEEEEcCC
Q psy125           80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR------KKNLQYYDISAK  151 (385)
Q Consensus        80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~Sa~  151 (385)
                      ..+|++++|+|+.+++.++.....+..+..  ..++.|+++.+||.|+.+.....++.....      ....++.++||.
T Consensus        91 ~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal  170 (197)
T KOG0076|consen   91 WLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSAL  170 (197)
T ss_pred             HHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhh
Confidence            999999999999999888776555544443  347899999999999987655444443322      233478999999


Q ss_pred             CCCChHHHHHHHHHHHhcC
Q psy125          152 SNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~~~  170 (385)
                      +|.|+.+-..++.+.+..+
T Consensus       171 ~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  171 TGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hcccHHHHHHHHHHHHhhc
Confidence            9999999999999998765

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.64  E-value=3.4e-15  Score=141.99  Aligned_cols=158  Identities=16%  Similarity=0.125  Sum_probs=120.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc------cchhhhh-
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG------GLRDGYY-   79 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~------~~~~~~~-   79 (385)
                      |+..+|+++|.||||||||+|++.+.+  ..+.+.+|+|.+.+......++..+.++|.||.-...      ...+.++ 
T Consensus         1 ~~~~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll   78 (653)
T COG0370           1 MKKLTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL   78 (653)
T ss_pred             CCcceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence            355789999999999999999966533  4567899999999999988888889999999963221      1223333 


Q ss_pred             -ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125           80 -IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        80 -~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (385)
                       ..+|+++-|+|+++.+.--   .+-.++..  -+.|+++++|++|...++- ..+...+.+..+.++++++|+++.|++
T Consensus        79 ~~~~D~ivnVvDAtnLeRnL---yltlQLlE--~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          79 EGKPDLIVNVVDATNLERNL---YLTLQLLE--LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             cCCCCEEEEEcccchHHHHH---HHHHHHHH--cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence             4579999999999865321   22223332  4889999999999866433 445666888899999999999999999


Q ss_pred             HHHHHHHHHHhcCC
Q psy125          158 KPFLWLARKLIGDP  171 (385)
Q Consensus       158 ~l~~~i~~~l~~~~  171 (385)
                      +++..+.+....+.
T Consensus       154 ~l~~~i~~~~~~~~  167 (653)
T COG0370         154 ELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHhccccc
Confidence            99999988765543

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.63  E-value=3.2e-15  Score=127.36  Aligned_cols=118  Identities=19%  Similarity=0.352  Sum_probs=85.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccC-cEEEEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQG-QCAIIMF   89 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~-d~illV~   89 (385)
                      +|+|+|++|||||||+++|..+.+...+.++ ...............+.+.+||+||+.+++.....+++++ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            6899999999999999998887665554433 2222222222223467899999999998888778888898 9999999


Q ss_pred             eCCCh-hhhhcHHHHHHHHHH----hcCCCCEEEEEeCCCCcchh
Q psy125           90 DVTSR-ITYKNVPNWHRDLVR----VCENIPIVLCGNKVDIKDRK  129 (385)
Q Consensus        90 d~~~~-~~~~~~~~~~~~l~~----~~~~~~~ilv~nK~Dl~~~~  129 (385)
                      |+.+. ..+.....++..+..    .....|+++++||+|+....
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~  125 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK  125 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence            99987 555554444433322    22579999999999986543

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.63  E-value=7.1e-15  Score=143.54  Aligned_cols=155  Identities=17%  Similarity=0.087  Sum_probs=108.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC---CCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGE---FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~---~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      +.|+++|+.++|||||+++|.+..   +...  ...|+|.+.........+..+.+||+||++.+...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE--~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEE--KKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhH--hcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            468999999999999999976522   1111  23455555544444444588999999999988777777889999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhh----hHHHHHHHHhc----CCeEEEEcCCCCCChH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV----KAKSIVFHRKK----NLQYYDISAKSNYNFE  157 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~----~~~~~~~~~~~----~~~~~~~Sa~~~~gi~  157 (385)
                      +|+|+++....+.. ..+..+ .. .++| +++|+||+|+.+...    ..+...+....    ..+++++|++++.|++
T Consensus        79 LVVDa~~G~~~qT~-ehl~il-~~-lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~  155 (581)
T TIGR00475        79 LVVDADEGVMTQTG-EHLAVL-DL-LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIG  155 (581)
T ss_pred             EEEECCCCCcHHHH-HHHHHH-HH-cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCch
Confidence            99999984322211 122222 22 3667 999999999875432    22233333322    4689999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy125          158 KPFLWLARKLIG  169 (385)
Q Consensus       158 ~l~~~i~~~l~~  169 (385)
                      +++..|...+..
T Consensus       156 eL~~~L~~l~~~  167 (581)
T TIGR00475       156 ELKKELKNLLES  167 (581)
T ss_pred             hHHHHHHHHHHh
Confidence            999988776643

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.63  E-value=9.8e-15  Score=130.26  Aligned_cols=161  Identities=18%  Similarity=0.188  Sum_probs=111.2

Q ss_pred             cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCC
Q psy125           73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS  152 (385)
Q Consensus        73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (385)
                      ......+.++|++|+|+|+..+.+..+  ..+..+.   .++|+++|+||+|+.+......+...+...+..++.+|+++
T Consensus        13 ~~~~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l---~~kp~IiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~   87 (276)
T TIGR03596        13 REIKEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR---GNKPRLIVLNKADLADPAVTKQWLKYFEEKGIKALAINAKK   87 (276)
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH---CCCCEEEEEEccccCCHHHHHHHHHHHHHcCCeEEEEECCC
Confidence            345667789999999999988765443  1222222   47899999999999654333333334444456789999999


Q ss_pred             CCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECC
Q psy125          153 NYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGD  232 (385)
Q Consensus       153 ~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~  232 (385)
                      +.|+++++..+...+.....                              ..           .........++++++|.
T Consensus        88 ~~gi~~L~~~i~~~~~~~~~------------------------------~~-----------~~~~~~~~~~~~~~vG~  126 (276)
T TIGR03596        88 GKGVKKIIKAAKKLLKEKNE------------------------------KL-----------KAKGLKNRPIRAMIVGI  126 (276)
T ss_pred             cccHHHHHHHHHHHHHHhhh------------------------------hh-----------hhccCCCCCeEEEEECC
Confidence            99999988887776532100                              00           00011223589999999


Q ss_pred             CCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125          233 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ  283 (385)
Q Consensus       233 ~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~  283 (385)
                      +||||||++|++.... .......+|+|+..+.+.++.   .+.++||||.
T Consensus       127 ~nvGKSslin~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       127 PNVGKSTLINRLAGKK-VAKVGNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCCHHHHHHHHhCCC-ccccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            9999999999977544 334467788898888777754   3689999998

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.62  E-value=1.7e-14  Score=121.58  Aligned_cols=146  Identities=16%  Similarity=0.070  Sum_probs=100.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFE--------------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG   73 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~--------------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~   73 (385)
                      +.++|+++|+.++|||||+++|+.....              .......|.|.+........+...+.++||||...+..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            3579999999999999999998753110              01112567777777777777788999999999987766


Q ss_pred             chhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhh-----hHHHHHHHHhc-----C
Q psy125           74 LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV-----KAKSIVFHRKK-----N  142 (385)
Q Consensus        74 ~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~-----~~~~~~~~~~~-----~  142 (385)
                      .....+..+|++++|+|+......+. ...+..+..  .++| +++++||+|+.....     ..++..+....     .
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            66677789999999999987533222 122222222  3566 778999999853221     12233333332     3


Q ss_pred             CeEEEEcCCCCCCh
Q psy125          143 LQYYDISAKSNYNF  156 (385)
Q Consensus       143 ~~~~~~Sa~~~~gi  156 (385)
                      .+++++||.++.++
T Consensus       158 v~iipiSa~~g~n~  171 (195)
T cd01884         158 TPIVRGSALKALEG  171 (195)
T ss_pred             CeEEEeeCccccCC
Confidence            57999999998875

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.62  E-value=1.3e-14  Score=120.09  Aligned_cols=150  Identities=14%  Similarity=0.122  Sum_probs=100.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc----------ccchhhhhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF----------GGLRDGYYI   80 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~----------~~~~~~~~~   80 (385)
                      .|+++|++|+|||||+|.++++.+.....++.+.+........+.   .+.+|||||....          ......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999887777777777888777665554433   8889999995432          122223333


Q ss_pred             ---cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh----HHHHHHHH--hcCCeEEEEcCC
Q psy125           81 ---QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHR--KKNLQYYDISAK  151 (385)
Q Consensus        81 ---~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~----~~~~~~~~--~~~~~~~~~Sa~  151 (385)
                         +.+++++++|.......... .....+..  .+.|+++++||+|+......    ........  ....+++++|++
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~-~~~~~l~~--~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~  154 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDL-EMLDWLEE--LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSL  154 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHH-HHHHHHHH--cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecC
Confidence               45678889988765322211 12222222  35789999999998543221    11222222  344588999999


Q ss_pred             CCCChHHHHHHHHHH
Q psy125          152 SNYNFEKPFLWLARK  166 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~  166 (385)
                      ++.|+.+++..|.+.
T Consensus       155 ~~~~~~~l~~~l~~~  169 (170)
T cd01876         155 KGQGIDELRALIEKW  169 (170)
T ss_pred             CCCCHHHHHHHHHHh
Confidence            999999999988765

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04171 SelB SelB subfamily

Probab=99.62  E-value=1.6e-15  Score=125.12  Aligned_cols=109  Identities=16%  Similarity=0.112  Sum_probs=78.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhc---CccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLT---GEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      -|+++|.+|||||++++++..   +.+...+.++...+.....+.... ...+.+|||||+++|......+++++|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            489999999999999999874   333333223222222223333332 4578999999999987666678899999999


Q ss_pred             EEeCCC---hhhhhh-----------------------------------------------hheeccccCCCchHHHHH
Q psy125          303 MFDVTS---RITYKN-----------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       303 v~d~~~---~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |||+++   ..+++.                                               +++|||++|.||+++|..
T Consensus        81 V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  160 (164)
T cd04171          81 VVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEY  160 (164)
T ss_pred             EEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHH
Confidence            999987   444443                                               677899999999988888


Q ss_pred             HHH
Q psy125          333 LAR  335 (385)
Q Consensus       333 l~~  335 (385)
                      +.+
T Consensus       161 l~~  163 (164)
T cd04171         161 LDE  163 (164)
T ss_pred             Hhh
Confidence            754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG4423|consensus

Probab=99.62  E-value=1.2e-17  Score=132.06  Aligned_cols=118  Identities=36%  Similarity=0.608  Sum_probs=109.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC-eeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      .+|+.++|..++||++++.+++...|...|..|+|.++.-+....+. ..+++.+||.+||++|..+...||+.+++..+
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i  104 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI  104 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence            47899999999999999999999999999999999999877776654 45678999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------------hheeccccCCCchH
Q psy125          303 MFDVTSRITYKN------------------------------------------------------YYDISAKSNYNFEK  328 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v~~  328 (385)
                      |||+|+..+|+.                                                      .+|||||.+.|+.|
T Consensus       105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E  184 (229)
T KOG4423|consen  105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE  184 (229)
T ss_pred             EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence            999999999988                                                      79999999999999


Q ss_pred             HHHHHHHHHhcCC
Q psy125          329 PFLWLARKLIGDP  341 (385)
Q Consensus       329 ~f~~l~~~i~~~~  341 (385)
                      +-..|+.+++-+.
T Consensus       185 a~r~lVe~~lvnd  197 (229)
T KOG4423|consen  185 AQRELVEKILVND  197 (229)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999998875

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.62  E-value=1e-14  Score=130.53  Aligned_cols=148  Identities=20%  Similarity=0.196  Sum_probs=106.3

Q ss_pred             hhhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCC
Q psy125           76 DGYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNY  154 (385)
Q Consensus        76 ~~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (385)
                      +..+.++|.+++|+|+.++. ++..+..|+..+..  .++|+++|+||+|+............+...+.+++.+|++++.
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~  150 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGE  150 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence            34578999999999999887 66777777765543  5789999999999965433223333445567899999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCC
Q psy125          155 NFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGG  234 (385)
Q Consensus       155 gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~  234 (385)
                      |+++++..|..                                                           ..++++|.+|
T Consensus       151 gi~~L~~~L~~-----------------------------------------------------------k~~~~~G~sg  171 (287)
T cd01854         151 GLDELREYLKG-----------------------------------------------------------KTSVLVGQSG  171 (287)
T ss_pred             cHHHHHhhhcc-----------------------------------------------------------ceEEEECCCC
Confidence            99876654331                                                           2489999999


Q ss_pred             CCHHHHHHHHhcCcccc------ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125          235 TGKTTFVKRHLTGEFEK------KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG  287 (385)
Q Consensus       235 vgks~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  287 (385)
                      |||||++|.++......      ......++|.....+.+.+.+   .++||||...+.
T Consensus       172 ~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~---~liDtPG~~~~~  227 (287)
T cd01854         172 VGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGGG---LLIDTPGFREFG  227 (287)
T ss_pred             CCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCCC---EEEECCCCCccC
Confidence            99999999977543221      112233466666666665443   589999987654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK15494 era GTPase Era; Provisional

Probab=99.62  E-value=2e-15  Score=138.24  Aligned_cols=120  Identities=16%  Similarity=0.231  Sum_probs=89.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc-cCcccc-------ccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRD-------GYY  294 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~-------~~~  294 (385)
                      ..++++++|.+|||||||++++++..+. .+++.+++|+......+...+..+.+|||||+.. +..+..       .++
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~k~~-ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l  129 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGEKLS-IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSL  129 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCCcee-eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence            4579999999999999999999876653 4556666665544333333345689999999853 333332       247


Q ss_pred             ccCcEEEEEEeCCChhhhhh---------------------------------------------hheeccccCCCchHH
Q psy125          295 IQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       295 ~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      .++|++|+|+|.++.  |.+                                             ++++||++|.||+++
T Consensus       130 ~~aDvil~VvD~~~s--~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL  207 (339)
T PRK15494        130 HSADLVLLIIDSLKS--FDDITHNILDKLRSLNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGL  207 (339)
T ss_pred             hhCCEEEEEEECCCC--CCHHHHHHHHHHHhcCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHH
Confidence            799999999998752  222                                             689999999999999


Q ss_pred             HHHHHHHHhcCCCccc
Q psy125          330 FLWLARKLIGDPNLEF  345 (385)
Q Consensus       330 f~~l~~~i~~~~~~~~  345 (385)
                      |.+|+..+...+....
T Consensus       208 ~~~L~~~l~~~~~~~~  223 (339)
T PRK15494        208 LEYITSKAKISPWLYA  223 (339)
T ss_pred             HHHHHHhCCCCCCCCC
Confidence            9999998876654433

>PRK10218 GTP-binding protein; Provisional

Probab=99.62  E-value=2.4e-14  Score=139.34  Aligned_cols=156  Identities=15%  Similarity=0.189  Sum_probs=113.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc--CCCCCc------------ccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT--GEFEKK------------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL   74 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~--~~~~~~------------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~   74 (385)
                      ..+|+++|+.++|||||+++|+.  +.+...            ...+.|.|.........++++.+++|||||+.++...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            45899999999999999999886  333222            1246788888888888888999999999999999888


Q ss_pred             hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHHh-------cCCe
Q psy125           75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHRK-------KNLQ  144 (385)
Q Consensus        75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~-------~~~~  144 (385)
                      +..+++.+|++|+|+|+.+....+.. .+...+..  .++|.++++||+|+.....   ..++..+...       ...+
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~qt~-~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P  161 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQTR-FVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP  161 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHHHH-HHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence            88899999999999999875433322 22222222  5789999999999864322   2233333211       2357


Q ss_pred             EEEEcCCCCC----------ChHHHHHHHHHHH
Q psy125          145 YYDISAKSNY----------NFEKPFLWLARKL  167 (385)
Q Consensus       145 ~~~~Sa~~~~----------gi~~l~~~i~~~l  167 (385)
                      ++.+|+.+|.          |+..+++.|...+
T Consensus       162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             EEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            8999999997          4667777666664

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.61  E-value=1.1e-14  Score=138.27  Aligned_cols=155  Identities=18%  Similarity=0.144  Sum_probs=107.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcC--CCCC---------------------------cccccceeeeEEEEEEeCCe
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTG--EFEK---------------------------KYVATLGVEVHPLVFHTNRG   56 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~--~~~~---------------------------~~~~~~g~t~~~~~~~~~~~   56 (385)
                      +.+.++|+++|+.++|||||+++|+..  ....                           ......|+|.+........+
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            457799999999999999999998752  1110                           01134577888887888888


Q ss_pred             eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcc--hhh---
Q psy125           57 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD--RKV---  130 (385)
Q Consensus        57 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~--~~~---  130 (385)
                      .+.+.+|||||++.+.......+.++|++++|+|+++..++... ..+...+.......++++++||+|+..  ...   
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~  163 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA  163 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence            89999999999987766555667899999999999987433111 111112222334457889999999863  111   


Q ss_pred             -hHHHHHHHHhcC-----CeEEEEcCCCCCChHHHH
Q psy125          131 -KAKSIVFHRKKN-----LQYYDISAKSNYNFEKPF  160 (385)
Q Consensus       131 -~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l~  160 (385)
                       ..+...+....+     .+++++||+++.|+.+..
T Consensus       164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence             223334444433     578999999999987643

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG1673|consensus

Probab=99.61  E-value=2.1e-15  Score=115.68  Aligned_cols=118  Identities=28%  Similarity=0.433  Sum_probs=111.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      -.+||.++|++.+|||+++..+..+++.+.+..+.|..+..+.+.+.+..+.+.|||..|++++..+.+..+.++-+++|
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF   98 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF   98 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      +||.|.+.+.+.                                                    .+.|||-.+.||+.+|
T Consensus        99 mFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~KIF  178 (205)
T KOG1673|consen   99 MFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQKIF  178 (205)
T ss_pred             EEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHHHH
Confidence            999999999887                                                    7889999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      ..+..++..-
T Consensus       179 K~vlAklFnL  188 (205)
T KOG1673|consen  179 KIVLAKLFNL  188 (205)
T ss_pred             HHHHHHHhCC
Confidence            9999988664

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.60  E-value=2.2e-14  Score=128.71  Aligned_cols=162  Identities=20%  Similarity=0.217  Sum_probs=112.1

Q ss_pred             cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCC
Q psy125           73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS  152 (385)
Q Consensus        73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~  152 (385)
                      ......+.++|++|+|+|+..+.+..+  .++..+.   .++|+++|+||+|+.+......+..++...+..++.+|+++
T Consensus        16 ~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~---~~kp~iiVlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~   90 (287)
T PRK09563         16 REIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII---GNKPRLLILNKSDLADPEVTKKWIEYFEEQGIKALAINAKK   90 (287)
T ss_pred             HHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh---CCCCEEEEEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCC
Confidence            345567789999999999988765443  2222222   37899999999999654333334444444456789999999


Q ss_pred             CCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECC
Q psy125          153 NYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGD  232 (385)
Q Consensus       153 ~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~  232 (385)
                      +.|+++++..+...+....                             ...            .........++++++|.
T Consensus        91 ~~gi~~L~~~l~~~l~~~~-----------------------------~~~------------~~~~~~~~~~~~~~~G~  129 (287)
T PRK09563         91 GQGVKKILKAAKKLLKEKN-----------------------------ERR------------KAKGMRPRAIRAMIIGI  129 (287)
T ss_pred             cccHHHHHHHHHHHHHHHH-----------------------------hhh------------hhcccCcCceEEEEECC
Confidence            9999988887766652210                             000            00011123579999999


Q ss_pred             CCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc
Q psy125          233 GGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE  284 (385)
Q Consensus       233 ~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~  284 (385)
                      +||||||++|.+.... .....+.+|+|.....+.++..   +.++||||..
T Consensus       130 pnvGKSsliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~~---~~l~DtPGi~  177 (287)
T PRK09563        130 PNVGKSTLINRLAGKK-IAKTGNRPGVTKAQQWIKLGKG---LELLDTPGIL  177 (287)
T ss_pred             CCCCHHHHHHHHhcCC-ccccCCCCCeEEEEEEEEeCCc---EEEEECCCcC
Confidence            9999999999977543 3455778899998887776543   6899999984

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.60  E-value=5.3e-15  Score=122.57  Aligned_cols=111  Identities=17%  Similarity=0.138  Sum_probs=77.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc---------ccccc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD---------GYYIQ  296 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------~~~~~  296 (385)
                      +|+++|.+|||||++++++..+.+...  +..+++............+.+.||||||+........         .....
T Consensus         2 ~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~   79 (168)
T cd01897           2 TLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHL   79 (168)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhc
Confidence            689999999999999999987766422  2222333232223333457899999999843211000         11123


Q ss_pred             CcEEEEEEeCCChhhh--hh---------------------------------------------hheeccccCCCchHH
Q psy125          297 GQCAIIMFDVTSRITY--KN---------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       297 ~~~~ilv~d~~~~~s~--~~---------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      +|++|+|||++++.+|  +.                                             |++|||++|.|++++
T Consensus        80 ~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (168)
T cd01897          80 RAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEV  159 (168)
T ss_pred             cCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHH
Confidence            6899999999987654  21                                             899999999999999


Q ss_pred             HHHHHHHHh
Q psy125          330 FLWLARKLI  338 (385)
Q Consensus       330 f~~l~~~i~  338 (385)
                      |+++++.++
T Consensus       160 ~~~l~~~~~  168 (168)
T cd01897         160 KNKACELLL  168 (168)
T ss_pred             HHHHHHHhC
Confidence            999998763

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.60  E-value=4.3e-14  Score=112.68  Aligned_cols=160  Identities=23%  Similarity=0.202  Sum_probs=116.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc-----ccccce---eeeEEEEEEeCC-eeEEEEEEeCCCccccccch
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-----YVATLG---VEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLR   75 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~-----~~~~~g---~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~~~~   75 (385)
                      +.+...||+++|+.|+||||+++++........     ....-+   +|...-...... ++..+.+++|||+++++.++
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~   85 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW   85 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence            346778999999999999999999665442111     001111   222222222222 23667899999999999999


Q ss_pred             hhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhc--CCeEEEEcCCCC
Q psy125           76 DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--NLQYYDISAKSN  153 (385)
Q Consensus        76 ~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~  153 (385)
                      .-+.+++.++++++|.+.+..+ .....+..+... ..+|++++.||.|+.+.....++.++....  ..+.+..++..+
T Consensus        86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a~e~  163 (187)
T COG2229          86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-NPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDATEG  163 (187)
T ss_pred             HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-cCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeecccc
Confidence            9999999999999999998877 323444444332 228999999999999887777777777666  679999999999


Q ss_pred             CChHHHHHHHHHH
Q psy125          154 YNFEKPFLWLARK  166 (385)
Q Consensus       154 ~gi~~l~~~i~~~  166 (385)
                      .+..+++..+...
T Consensus       164 ~~~~~~L~~ll~~  176 (187)
T COG2229         164 EGARDQLDVLLLK  176 (187)
T ss_pred             hhHHHHHHHHHhh
Confidence            9999888877665

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.59  E-value=1.5e-13  Score=112.07  Aligned_cols=153  Identities=16%  Similarity=0.176  Sum_probs=100.7

Q ss_pred             cEEEEEEeCCChhhhhcHHHHHH-HHHHhcCCCCEEEEEeCCCCcchhhhHHHH-HHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           83 QCAIIMFDVTSRITYKNVPNWHR-DLVRVCENIPIVLCGNKVDIKDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~~~~~-~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      |++++|+|++++.+...  .++. ... ...++|+++|+||+|+........+. .+.......++.+|++++.|+++++
T Consensus         1 Dvvl~VvD~~~p~~~~~--~~i~~~~~-~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~   77 (155)
T cd01849           1 DVILEVLDARDPLGTRS--PDIERVLI-KEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKE   77 (155)
T ss_pred             CEEEEEEeccCCccccC--HHHHHHHH-hcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHH
Confidence            67899999988765543  2232 111 22578999999999996544333322 2333345578999999999999988


Q ss_pred             HHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHH
Q psy125          161 LWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTF  240 (385)
Q Consensus       161 ~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~  240 (385)
                      ..+......+                             .+.....            .......+++++|.+|||||++
T Consensus        78 ~~i~~~~~~~-----------------------------~~~~~~~------------~~~~~~~~~~~~G~~~~GKstl  116 (155)
T cd01849          78 SAFTKQTNSN-----------------------------LKSYAKD------------GKLKKSITVGVIGYPNVGKSSV  116 (155)
T ss_pred             HHHHHHhHHH-----------------------------HHHHHhc------------cccccCcEEEEEccCCCCHHHH
Confidence            8876653210                             1111000            0012347899999999999999


Q ss_pred             HHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125          241 VKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ  283 (385)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~  283 (385)
                      +|.++.. .........|+|.....+..+.   .+.++||||.
T Consensus       117 in~l~~~-~~~~~~~~~~~t~~~~~~~~~~---~~~liDtPG~  155 (155)
T cd01849         117 INALLNK-LKLKVGNVPGTTTSQQEVKLDN---KIKLLDTPGI  155 (155)
T ss_pred             HHHHHcc-ccccccCCCCcccceEEEEecC---CEEEEECCCC
Confidence            9997743 3333555667787777766553   3789999994

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.59  E-value=4.8e-14  Score=119.75  Aligned_cols=159  Identities=14%  Similarity=0.036  Sum_probs=105.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc----c-------hhhh
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----L-------RDGY   78 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----~-------~~~~   78 (385)
                      ++|+|+|.+|+|||||+|.|++...........+.|..+.......++..+.++||||......    .       ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            4899999999999999999988765544444567777777666666778999999999754321    0       1112


Q ss_pred             hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcC---CCCEEEEEeCCCCcchh--------hhHHHHHHHHhcCCeEEE
Q psy125           79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDRK--------VKAKSIVFHRKKNLQYYD  147 (385)
Q Consensus        79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~---~~~~ilv~nK~Dl~~~~--------~~~~~~~~~~~~~~~~~~  147 (385)
                      .++.|++|+|+++.. .+... ...+..+...+.   ..++++++++.|.....        .......+...++..++.
T Consensus        81 ~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            367899999999887 22211 122333332222   35788889988854321        123455566666777766


Q ss_pred             EcC-----CCCCChHHHHHHHHHHHhcC
Q psy125          148 ISA-----KSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       148 ~Sa-----~~~~gi~~l~~~i~~~l~~~  170 (385)
                      ++.     ..+.++.+++..|.+.+..+
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~  186 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVKEN  186 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence            654     45667888888888887763

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>PRK00098 GTPase RsgA; Reviewed

Probab=99.58  E-value=4.1e-14  Score=127.45  Aligned_cols=144  Identities=19%  Similarity=0.187  Sum_probs=100.7

Q ss_pred             hhccCcEEEEEEeCCChhhhhc-HHHHHHHHHHhcCCCCEEEEEeCCCCcch-hhhHHHHHHHHhcCCeEEEEcCCCCCC
Q psy125           78 YYIQGQCAIIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIKDR-KVKAKSIVFHRKKNLQYYDISAKSNYN  155 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~~~~~-~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (385)
                      .+.++|.+++|+|+.++..... +..|+..+..  .++|+++|+||+|+... .....+...+...+.+++.+|++++.|
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g  154 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG  154 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            3589999999999988765443 3556655443  57899999999999632 223334445556678999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCC
Q psy125          156 FEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGT  235 (385)
Q Consensus       156 i~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~v  235 (385)
                      +++++..+..                                                           ..++++|.+||
T Consensus       155 i~~L~~~l~g-----------------------------------------------------------k~~~~~G~sgv  175 (298)
T PRK00098        155 LDELKPLLAG-----------------------------------------------------------KVTVLAGQSGV  175 (298)
T ss_pred             HHHHHhhccC-----------------------------------------------------------ceEEEECCCCC
Confidence            9877665311                                                           24889999999


Q ss_pred             CHHHHHHHHhcCccccccc-------cceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125          236 GKTTFVKRHLTGEFEKKYV-------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF  286 (385)
Q Consensus       236 gks~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  286 (385)
                      |||||+|.++.... ....       ...++|.....+.+.+..   .|+||||...+
T Consensus       176 GKStlin~l~~~~~-~~~g~v~~~~~~G~htT~~~~~~~~~~~~---~~~DtpG~~~~  229 (298)
T PRK00098        176 GKSTLLNALAPDLE-LKTGEISEALGRGKHTTTHVELYDLPGGG---LLIDTPGFSSF  229 (298)
T ss_pred             CHHHHHHHHhCCcC-CCCcceeccCCCCCcccccEEEEEcCCCc---EEEECCCcCcc
Confidence            99999999774322 1111       122356666666665443   68999998754

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.58  E-value=9e-15  Score=121.13  Aligned_cols=112  Identities=15%  Similarity=0.128  Sum_probs=85.6

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      .++++|.+|+|||++++++..+.+.....++...+.....+..+ +....+.+|||||+..|..++..+++.+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            48999999999999999999887765533333222222333332 23567899999999999888888999999999999


Q ss_pred             eCCCh---hhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          305 DVTSR---ITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       305 d~~~~---~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |+++.   .++..                                                +++|||++|.||+++|++|
T Consensus        82 d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T cd01887          82 AADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAI  161 (168)
T ss_pred             ECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHH
Confidence            99983   33322                                                4688999999999999999


Q ss_pred             HHHH
Q psy125          334 ARKL  337 (385)
Q Consensus       334 ~~~i  337 (385)
                      ++..
T Consensus       162 ~~~~  165 (168)
T cd01887         162 LLLA  165 (168)
T ss_pred             HHhh
Confidence            8753

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.57  E-value=3.6e-14  Score=138.30  Aligned_cols=154  Identities=16%  Similarity=0.219  Sum_probs=112.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc--CCCCCc------------ccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchh
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT--GEFEKK------------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD   76 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~--~~~~~~------------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~   76 (385)
                      +|+++|+.++|||||+++|+.  +.+...            .....|.|.......+.++++.+++|||||+.++.....
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            699999999999999999885  222211            123457777777777788889999999999998888888


Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHH-------hcCCeEE
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHR-------KKNLQYY  146 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~-------~~~~~~~  146 (385)
                      .++..+|++++|+|+.+....+ ...++..+..  .++|+++++||+|+.....   ..+...++.       ....+++
T Consensus        83 ~~l~~aD~alLVVDa~~G~~~q-T~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl  159 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGPMPQ-TRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIV  159 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCCcHH-HHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEE
Confidence            8999999999999998743222 2344444433  4789999999999854322   233333332       1245789


Q ss_pred             EEcCCCCC----------ChHHHHHHHHHHH
Q psy125          147 DISAKSNY----------NFEKPFLWLARKL  167 (385)
Q Consensus       147 ~~Sa~~~~----------gi~~l~~~i~~~l  167 (385)
                      .+||+++.          |+..++..|...+
T Consensus       160 ~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       160 YASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             echhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            99999985          6888888888775

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.57  E-value=1.5e-14  Score=118.12  Aligned_cols=109  Identities=28%  Similarity=0.458  Sum_probs=94.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|+|||+|++++..+.+...+.++.+.+.....+..++..+.+.+|||||+..+..++..+++.++++++++
T Consensus         2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~   81 (161)
T TIGR00231         2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVF   81 (161)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEE
Confidence            68999999999999999999988877777777777776666667766688999999999999999999999999999999


Q ss_pred             eCCCh-hhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          305 DVTSR-ITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       305 d~~~~-~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |++.. .++.+                                                ++++||++|.|+.++|.+|
T Consensus        82 d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l  159 (161)
T TIGR00231        82 DIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIV  159 (161)
T ss_pred             EEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHh
Confidence            99877 44443                                                7999999999999999886

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.57  E-value=9.5e-14  Score=120.81  Aligned_cols=157  Identities=19%  Similarity=0.171  Sum_probs=114.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc-----ccc---hhhhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-----GGL---RDGYY   79 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~-----~~~---~~~~~   79 (385)
                      ..+.|++.|.||||||||++++.+  ..+.+.+++.+|.....+....+..+++++||||.-+.     ..+   ....+
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~--AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTT--AKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhc--CCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            346899999999999999999555  44667788888999999999999999999999996321     111   11111


Q ss_pred             -ccCcEEEEEEeCCChhhh--hcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHH-HHHhcCCeEEEEcCCCCCC
Q psy125           80 -IQGQCAIIMFDVTSRITY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYN  155 (385)
Q Consensus        80 -~~~d~illV~d~~~~~~~--~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~~~~Sa~~~~g  155 (385)
                       .=.++++|++|.+...++  +....++..+...+. .|+++|.||+|....+...+... +....+.....+++..+.+
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCG  323 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhh
Confidence             236788999999886554  445567777776655 89999999999875544333332 4444555677888888889


Q ss_pred             hHHHHHHHHHHH
Q psy125          156 FEKPFLWLARKL  167 (385)
Q Consensus       156 i~~l~~~i~~~l  167 (385)
                      ++.....+....
T Consensus       324 ~d~~~~~v~~~a  335 (346)
T COG1084         324 LDKLREEVRKTA  335 (346)
T ss_pred             HHHHHHHHHHHh
Confidence            888877776664

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.57  E-value=5.8e-14  Score=136.27  Aligned_cols=156  Identities=21%  Similarity=0.198  Sum_probs=100.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccceeeeEEEEEEe------------CCeeEEEEEEeCCCcccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHT------------NRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g~t~~~~~~~~------------~~~~~~~~i~Dt~g~~~~   71 (385)
                      +...|+++|++|+|||||+|+|.+..+...    ...+.|.+........            ......+.+|||||++.+
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            456899999999999999999877654322    2233333322111100            000123889999999998


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hH----H
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KA----K  133 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~----~  133 (385)
                      ..++..++..+|++++|+|+++....+... .+..+..  .+.|+++++||+|+.....              ..    .
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e-~i~~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~  159 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQE-ALNILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQN  159 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHH-HHHHHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHH
Confidence            888888889999999999998743222211 1122222  4789999999999853110              00    0


Q ss_pred             H--------HHHHH--------------hcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125          134 S--------IVFHR--------------KKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus       134 ~--------~~~~~--------------~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      .        ..+..              ....+++++||++|.|+++++.+|...
T Consensus       160 ~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l  214 (590)
T TIGR00491       160 LDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL  214 (590)
T ss_pred             HHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence            0        00111              113588999999999999999887643

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>KOG0076|consensus

Probab=99.57  E-value=2.5e-15  Score=117.74  Aligned_cols=111  Identities=26%  Similarity=0.521  Sum_probs=95.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccc--------cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccccccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFE--------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ  296 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~  296 (385)
                      +-++|+|..++|||+++.+ +...|.        ....+|.|.....+.+.    ...+.+||..||+..+++|..||..
T Consensus        18 y~vlIlgldnAGKttfLe~-~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~----~~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   18 YSVLILGLDNAGKTTFLEA-LKTDFSKAYGGLNPSKITPTVGLNIGTIEVC----NAPLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhheeeccccCCchhHHHH-HHHHHHhhhcCCCHHHeecccceeecceeec----cceeEEEEcCChHHHHHHHHHHHHH
Confidence            6799999999999999987 333333        34566777666666553    4568999999999999999999999


Q ss_pred             CcEEEEEEeCCChhhhhh-----------------------------------------------------hheeccccC
Q psy125          297 GQCAIIMFDVTSRITYKN-----------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       297 ~~~~ilv~d~~~~~s~~~-----------------------------------------------------~~e~Sak~~  323 (385)
                      |||+|+|+|.+|++.|++                                                     |..+||.+|
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g  172 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG  172 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence            999999999999999988                                                     899999999


Q ss_pred             CCchHHHHHHHHHHhcC
Q psy125          324 YNFEKPFLWLARKLIGD  340 (385)
Q Consensus       324 ~~v~~~f~~l~~~i~~~  340 (385)
                      .||+|...|+++.+.++
T Consensus       173 egv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  173 EGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccHHHHHHHHHHHHhhc
Confidence            99999999999999776

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.56  E-value=6.2e-14  Score=129.46  Aligned_cols=155  Identities=17%  Similarity=0.208  Sum_probs=110.1

Q ss_pred             cccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHH----HHHHhcCC
Q psy125           69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSI----VFHRKKNL  143 (385)
Q Consensus        69 ~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~----~~~~~~~~  143 (385)
                      +.+..+...+...++++++|+|+.+...     .|...+.....+.|+++|+||+|+..... .....    ++....+.
T Consensus        51 e~f~~~l~~~~~~~~~Il~VvD~~d~~~-----s~~~~l~~~~~~~piilV~NK~DLl~k~~~~~~~~~~l~~~~k~~g~  125 (360)
T TIGR03597        51 DDFLNLLNSLGDSNALIVYVVDIFDFEG-----SLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGL  125 (360)
T ss_pred             HHHHHHHhhcccCCcEEEEEEECcCCCC-----CccHHHHHHhCCCCEEEEEEchhhCCCCCCHHHHHHHHHHHHHHcCC
Confidence            4566666777789999999999977542     34444444445789999999999864322 12222    23444444


Q ss_pred             ---eEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcC
Q psy125          144 ---QYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEM  220 (385)
Q Consensus       144 ---~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  220 (385)
                         .++.+||+++.|+++++..|.+...                                                    
T Consensus       126 ~~~~i~~vSAk~g~gv~eL~~~l~~~~~----------------------------------------------------  153 (360)
T TIGR03597       126 KPVDIILVSAKKGNGIDELLDKIKKARN----------------------------------------------------  153 (360)
T ss_pred             CcCcEEEecCCCCCCHHHHHHHHHHHhC----------------------------------------------------
Confidence               5899999999999998887755310                                                    


Q ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCcc----ccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125          221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEF----EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF  286 (385)
Q Consensus       221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  286 (385)
                         ..+++++|.+|||||||+|.++....    ....++.+|+|.....+.+++.   +.++||||....
T Consensus       154 ---~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~---~~l~DtPG~~~~  217 (360)
T TIGR03597       154 ---KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDG---HSLYDTPGIINS  217 (360)
T ss_pred             ---CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCC---CEEEECCCCCCh
Confidence               13799999999999999999875322    2356677888988887776443   479999997543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>KOG0074|consensus

Probab=99.56  E-value=1.4e-14  Score=109.33  Aligned_cols=111  Identities=25%  Similarity=0.373  Sum_probs=94.7

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      .+++|+.++|-.|+|||+++.+ +.++-+....||-|..  .+.+..+ +...+++||..||...+..|+.||.+.|++|
T Consensus        15 ~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn--~k~v~~~-g~f~LnvwDiGGqr~IRpyWsNYyenvd~lI   90 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFN--TKKVEYD-GTFHLNVWDIGGQRGIRPYWSNYYENVDGLI   90 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcc--eEEEeec-CcEEEEEEecCCccccchhhhhhhhccceEE
Confidence            5679999999999999999999 5567777778887654  4444444 3577999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125          302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      +|+|.+|+..|++                                                    +.+|||.++.++...
T Consensus        91 yVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~dg  170 (185)
T KOG0074|consen   91 YVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTDG  170 (185)
T ss_pred             EEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccCc
Confidence            9999999999998                                                    778999999998888


Q ss_pred             HHHHHHH
Q psy125          330 FLWLARK  336 (385)
Q Consensus       330 f~~l~~~  336 (385)
                      ..|+...
T Consensus       171 ~~wv~sn  177 (185)
T KOG0074|consen  171 SDWVQSN  177 (185)
T ss_pred             chhhhcC
Confidence            8887753

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.56  E-value=2.9e-14  Score=123.07  Aligned_cols=146  Identities=19%  Similarity=0.149  Sum_probs=97.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-----------------------------CCcccccceeeeEEEEEEeCCeeEEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYVATLGVEVHPLVFHTNRGAIRFN   61 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~-----------------------------~~~~~~~~g~t~~~~~~~~~~~~~~~~   61 (385)
                      .|+++|+.|+|||||+.+|+...-                             ........|+|++........++..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            489999999999999999863210                             011123456778877777878889999


Q ss_pred             EEeCCCccccccchhhhhccCcEEEEEEeCCChhh-----h-hcHHHHHHHHHHhcCCCCEEEEEeCCCCcc----hhh-
Q psy125           62 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRIT-----Y-KNVPNWHRDLVRVCENIPIVLCGNKVDIKD----RKV-  130 (385)
Q Consensus        62 i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~-----~-~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~----~~~-  130 (385)
                      +|||||+..+.......+..+|++++|+|+.+...     . ........ +.......|+++++||+|+..    ... 
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iiivvNK~Dl~~~~~~~~~~  159 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LARTLGVKQLIVAVNKMDDVTVNWSEERY  159 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHHcCCCeEEEEEEccccccccccHHHH
Confidence            99999987766555666788999999999988421     1 11111111 222223468899999999862    111 


Q ss_pred             ---hHHHHHHHHhc-----CCeEEEEcCCCCCChH
Q psy125          131 ---KAKSIVFHRKK-----NLQYYDISAKSNYNFE  157 (385)
Q Consensus       131 ---~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~  157 (385)
                         ..++..+....     ..+++++||++|.|+.
T Consensus       160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence               11222222222     2579999999999975

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.56  E-value=6.5e-14  Score=131.79  Aligned_cols=159  Identities=17%  Similarity=0.141  Sum_probs=102.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc--cccceeeeEEEEEE----------------e----CC------eeE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFH----------------T----NR------GAI   58 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~--~~~~g~t~~~~~~~----------------~----~~------~~~   58 (385)
                      ++.++|+++|..++|||||+++|.+ .+....  ....|.|.......                .    +.      ...
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt~-~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALTG-VWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHhC-eecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            4678999999999999999999643 221110  01112222211100                0    00      146


Q ss_pred             EEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh----HHH
Q psy125           59 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKS  134 (385)
Q Consensus        59 ~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~----~~~  134 (385)
                      .+.+|||||++.+...+...+..+|++++|+|+++..........+..+ ......++++++||+|+.+....    .+.
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            7999999999988777777778899999999999753111112222222 22234578999999998753321    222


Q ss_pred             HHHHHh---cCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125          135 IVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       135 ~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                      ..+...   ...+++++|++++.|+++++..|...+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            222222   145799999999999999999998765

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>TIGR00436 era GTP-binding protein Era

Probab=99.56  E-value=1.4e-14  Score=129.13  Aligned_cols=115  Identities=15%  Similarity=0.065  Sum_probs=86.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc-c-------cccccccC
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-L-------RDGYYIQG  297 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~-------~~~~~~~~  297 (385)
                      +|+++|.+|||||||+|++++..+ ..+++.+++|..............+.+|||||+..... +       ...++.++
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~-~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKI-SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcE-eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            689999999999999999886654 33455556666543332222345689999999864321 1       22467899


Q ss_pred             cEEEEEEeCCChhhhhh-------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          298 QCAIIMFDVTSRITYKN-------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       298 ~~~ilv~d~~~~~s~~~-------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |++++|+|+++..+++.                                           ++++||++|.|+++++.+|.
T Consensus        81 Dvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~  160 (270)
T TIGR00436        81 DLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIE  160 (270)
T ss_pred             CEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHH
Confidence            99999999998877643                                           68899999999999999999


Q ss_pred             HHHhcCC
Q psy125          335 RKLIGDP  341 (385)
Q Consensus       335 ~~i~~~~  341 (385)
                      +.+...+
T Consensus       161 ~~l~~~~  167 (270)
T TIGR00436       161 VHLPEGP  167 (270)
T ss_pred             HhCCCCC
Confidence            9875543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01898 Obg Obg subfamily

Probab=99.55  E-value=1e-14  Score=121.12  Aligned_cols=108  Identities=19%  Similarity=0.182  Sum_probs=75.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEE--EEeCCeeEEEEEeeCCCcc----ccCcccccccc---c
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--FHTNRGAIRFNVWDTAGQE----KFGGLRDGYYI---Q  296 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~Dt~G~~----~~~~~~~~~~~---~  296 (385)
                      .|+++|.+|||||||++++.....  ......+++.....  +..++ ...+.+|||||+.    .+..+...+++   .
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   78 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIER   78 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHh
Confidence            589999999999999999875432  11122222322211  12222 2468999999974    22334444444   5


Q ss_pred             CcEEEEEEeCCCh-hhhhh--------------------------------------------------hheeccccCCC
Q psy125          297 GQCAIIMFDVTSR-ITYKN--------------------------------------------------YYDISAKSNYN  325 (385)
Q Consensus       297 ~~~~ilv~d~~~~-~s~~~--------------------------------------------------~~e~Sak~~~~  325 (385)
                      +|++++|||++++ .++++                                                  +++|||++|.|
T Consensus        79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  158 (170)
T cd01898          79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEG  158 (170)
T ss_pred             CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCC
Confidence            9999999999998 55543                                                  78999999999


Q ss_pred             chHHHHHHHHH
Q psy125          326 FEKPFLWLARK  336 (385)
Q Consensus       326 v~~~f~~l~~~  336 (385)
                      |+++|.++++.
T Consensus       159 i~~l~~~i~~~  169 (170)
T cd01898         159 LDELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHHhh
Confidence            99999999875

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG1191|consensus

Probab=99.55  E-value=3.9e-14  Score=128.99  Aligned_cols=161  Identities=14%  Similarity=0.167  Sum_probs=113.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc-cc--------chhhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-GG--------LRDGY   78 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~-~~--------~~~~~   78 (385)
                      ..+.|+|+|+||||||||+|. +.+.....++|.+|+|++.....++-.++.+.+.||.|.... ..        .....
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNa-L~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNA-LSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHH-HhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            458999999999999999999 667788899999999999999999999999999999997541 11        22345


Q ss_pred             hccCcEEEEEEeCCC--hhhhhcHHHHHHHHHH-h------cCCCCEEEEEeCCCCcchhhh-HH-HHHHHHhc---CC-
Q psy125           79 YIQGQCAIIMFDVTS--RITYKNVPNWHRDLVR-V------CENIPIVLCGNKVDIKDRKVK-AK-SIVFHRKK---NL-  143 (385)
Q Consensus        79 ~~~~d~illV~d~~~--~~~~~~~~~~~~~l~~-~------~~~~~~ilv~nK~Dl~~~~~~-~~-~~~~~~~~---~~-  143 (385)
                      +.++|++++|+|+..  .++...+.+.+..... .      ....+++++.||.|+...-.. .. ...+....   .. 
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~  425 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP  425 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence            678999999999943  3222222223322211 1      123788999999998654111 11 01111111   12 


Q ss_pred             eEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          144 QYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       144 ~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      ....+|+.++.|++++...+...+..
T Consensus       426 i~~~vs~~tkeg~~~L~~all~~~~~  451 (531)
T KOG1191|consen  426 IVVEVSCTTKEGCERLSTALLNIVER  451 (531)
T ss_pred             eEEEeeechhhhHHHHHHHHHHHHHH
Confidence            34458999999999999888877654

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.55  E-value=2.2e-13  Score=115.65  Aligned_cols=154  Identities=17%  Similarity=0.205  Sum_probs=93.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccce---eeeEEEEEEeCCeeEEEEEEeCCCccccccchhhh-----hc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG---VEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGY-----YI   80 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g---~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~-----~~   80 (385)
                      +++|+++|++|||||||+|+|++...........+   ++.....+... ....+.+|||||..........+     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHP-KFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecC-CCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            37999999999999999999887554433333333   12222222111 13468999999975433222223     46


Q ss_pred             cCcEEEEEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh-------------hhHHHHH----HHHh--
Q psy125           81 QGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK-------------VKAKSIV----FHRK--  140 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~-------------~~~~~~~----~~~~--  140 (385)
                      ++|++++|.+-    .+...+ .++..+..  .+.|+++|+||+|+....             ...+...    ....  
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~--~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQC--MGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHH--hCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            78888887432    233223 34444443  267999999999984211             1111111    1111  


Q ss_pred             -cCCeEEEEcCC--CCCChHHHHHHHHHHHhc
Q psy125          141 -KNLQYYDISAK--SNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       141 -~~~~~~~~Sa~--~~~gi~~l~~~i~~~l~~  169 (385)
                       ...+++.+|+.  .+.+...+...|...+..
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence             12478899998  578899999988888754

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.54  E-value=4.6e-14  Score=134.09  Aligned_cols=116  Identities=19%  Similarity=0.224  Sum_probs=88.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc--------ccccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYY  294 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~  294 (385)
                      ..++++++|.+||||||++|+++.... ....+.+|+|.......+...+..+.+|||||++.+...        ...++
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            358999999999999999999886543 223344555554443333323456899999998765432        22368


Q ss_pred             ccCcEEEEEEeCCChhhhhh----------------------------------hheeccccCCCchHHHHHHHHHHhc
Q psy125          295 IQGQCAIIMFDVTSRITYKN----------------------------------YYDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       295 ~~~~~~ilv~d~~~~~s~~~----------------------------------~~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                      +++|++|+|||++++.++++                                  ++++||++|.|++++|.+|.+.+..
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~~~~~piiiV~NK~DL~~~~~~~~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEELKDKPVIVVLNKADLTGEIDLEEENGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHhcCCCCcEEEEEhhhccccchhhhccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            89999999999999877655                                  5789999999999999999998854

>cd01878 HflX HflX subfamily

Probab=99.54  E-value=2.8e-14  Score=122.17  Aligned_cols=113  Identities=18%  Similarity=0.088  Sum_probs=80.1

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccc--cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc--ccc------
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--LRD------  291 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~~~------  291 (385)
                      ....+|+++|.+|||||||++++....+...  +.+|..  .....+...+. ..+.+|||||+.....  +..      
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~--~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~  115 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLD--PTTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL  115 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceecc--ceeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH
Confidence            3457999999999999999999887654322  222322  22223333332 3688999999733211  111      


Q ss_pred             cccccCcEEEEEEeCCChhhhhh-------------------------------------------hheeccccCCCchH
Q psy125          292 GYYIQGQCAIIMFDVTSRITYKN-------------------------------------------YYDISAKSNYNFEK  328 (385)
Q Consensus       292 ~~~~~~~~~ilv~d~~~~~s~~~-------------------------------------------~~e~Sak~~~~v~~  328 (385)
                      ..+.++|++++|+|++++.++.+                                           +++|||++|.||++
T Consensus       116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  195 (204)
T cd01878         116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDE  195 (204)
T ss_pred             HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHH
Confidence            13678999999999999877643                                           89999999999999


Q ss_pred             HHHHHHHHH
Q psy125          329 PFLWLARKL  337 (385)
Q Consensus       329 ~f~~l~~~i  337 (385)
                      +|.+|.+.+
T Consensus       196 l~~~L~~~~  204 (204)
T cd01878         196 LLEAIEELL  204 (204)
T ss_pred             HHHHHHhhC
Confidence            999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.54  E-value=2.2e-13  Score=117.41  Aligned_cols=152  Identities=15%  Similarity=0.182  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccc-----------------------cceeeeEEEE-------------EEeC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVA-----------------------TLGVEVHPLV-------------FHTN   54 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~-----------------------~~g~t~~~~~-------------~~~~   54 (385)
                      ||+++|+.++|||||+++|..+.+......                       ..|.+..-..             ....
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999887655321110                       1111100000             0111


Q ss_pred             CeeEEEEEEeCCCccccccchhhhh--ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH
Q psy125           55 RGAIRFNVWDTAGQEKFGGLRDGYY--IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA  132 (385)
Q Consensus        55 ~~~~~~~i~Dt~g~~~~~~~~~~~~--~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~  132 (385)
                      ..+..++++||||+.++.......+  ..+|++++|+|++.....+. ..++..+..  .++|+++++||+|+.+.....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d-~~~l~~l~~--~~ip~ivvvNK~D~~~~~~~~  157 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT-KEHLGLALA--LNIPVFVVVTKIDLAPANILQ  157 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCEEEEEECccccCHHHHH
Confidence            2356789999999987755443334  36899999999886543221 223333332  478999999999986543221


Q ss_pred             ----HHHHHHH--------------------------hcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125          133 ----KSIVFHR--------------------------KKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus       133 ----~~~~~~~--------------------------~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                          ++..+..                          ....+++.+|+.++.|+++++..|..
T Consensus       158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence                1222221                          11238899999999999988877644

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.54  E-value=2.6e-13  Score=132.38  Aligned_cols=155  Identities=23%  Similarity=0.248  Sum_probs=98.9

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccceeeeEEEEEEe--CCee-----E-----EEEEEeCCCc
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHT--NRGA-----I-----RFNVWDTAGQ   68 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g~t~~~~~~~~--~~~~-----~-----~~~i~Dt~g~   68 (385)
                      |..+++.|+++|+.|+|||||+++|.+......    ...+.|.+........  ....     .     .+.+|||||+
T Consensus         2 ~~~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~   81 (586)
T PRK04004          2 KKLRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH   81 (586)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence            566778999999999999999999754332111    1223333322111100  0000     1     2689999999


Q ss_pred             cccccchhhhhccCcEEEEEEeCCCh---hhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---------------
Q psy125           69 EKFGGLRDGYYIQGQCAIIMFDVTSR---ITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---------------  130 (385)
Q Consensus        69 ~~~~~~~~~~~~~~d~illV~d~~~~---~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---------------  130 (385)
                      +.+..++...+..+|++++|+|+++.   .+++.+    ..+..  .+.|+++++||+|+.....               
T Consensus        82 e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~  155 (586)
T PRK04004         82 EAFTNLRKRGGALADIAILVVDINEGFQPQTIEAI----NILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQS  155 (586)
T ss_pred             HHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhh
Confidence            99888877788899999999999873   333222    22222  5789999999999842100               


Q ss_pred             ---hH-------HHHHHHHh---------------cCCeEEEEcCCCCCChHHHHHHHHH
Q psy125          131 ---KA-------KSIVFHRK---------------KNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus       131 ---~~-------~~~~~~~~---------------~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                         ..       +.......               ...+++++||.++.|+++++..+..
T Consensus       156 ~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        156 QRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence               00       00011111               2347899999999999998877754

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.53  E-value=1.6e-13  Score=129.07  Aligned_cols=164  Identities=17%  Similarity=0.140  Sum_probs=102.6

Q ss_pred             CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc--ccccceeeeEEEEEEeC------------------------
Q psy125            1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLVFHTN------------------------   54 (385)
Q Consensus         1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~--~~~~~g~t~~~~~~~~~------------------------   54 (385)
                      |.=+-..+.++|+++|+.++|||||+.+|.+ .+...  .....|.|.........                        
T Consensus         1 ~~~~~~~~~~ni~v~Gh~d~GKSTL~~~L~~-~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (411)
T PRK04000          1 MMWEKVQPEVNIGMVGHVDHGKTTLVQALTG-VWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGS   79 (411)
T ss_pred             CCcccCCCcEEEEEEccCCCCHHHHHHHhhC-eecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccc
Confidence            3334456789999999999999999998643 21111  11123334332211100                        


Q ss_pred             --CeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh
Q psy125           55 --RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK  131 (385)
Q Consensus        55 --~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~  131 (385)
                        .....+++|||||++.+..........+|++++|+|++++. ..+.. ..+..+ ......++++|+||+|+.+....
T Consensus        80 ~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~-~~l~~l-~~~~i~~iiVVlNK~Dl~~~~~~  157 (411)
T PRK04000         80 ETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTK-EHLMAL-DIIGIKNIVIVQNKIDLVSKERA  157 (411)
T ss_pred             ccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHH-HHHHHH-HHcCCCcEEEEEEeeccccchhH
Confidence              01367899999999876654445556789999999999653 22211 112222 22233468999999998653221


Q ss_pred             ----HHHHHHHHh---cCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125          132 ----AKSIVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       132 ----~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                          .+...+...   ...+++++||+++.|+++++..|...+
T Consensus       158 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        158 LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence                222223222   246899999999999999999988765

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.53  E-value=1.2e-14  Score=123.26  Aligned_cols=85  Identities=20%  Similarity=0.307  Sum_probs=71.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc--Ccccccc------------ccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLT--GEFEKKY------------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR  290 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~  290 (385)
                      -+|+++|.++||||+|+++++.  +.|...+            .++.|.++......+..+.+.+.+|||||+++|....
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3799999999999999999986  5554433            2456777777766777778889999999999999999


Q ss_pred             ccccccCcEEEEEEeCCCh
Q psy125          291 DGYYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       291 ~~~~~~~~~~ilv~d~~~~  309 (385)
                      ..+++++|++++|||+++.
T Consensus        83 ~~~~~~~d~~ilV~d~~~~  101 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEG  101 (194)
T ss_pred             HHHHHhcCEEEEEEECCCC
Confidence            9999999999999999983

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.53  E-value=1.2e-13  Score=120.24  Aligned_cols=135  Identities=17%  Similarity=0.150  Sum_probs=91.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC----------c------ccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEK----------K------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL   74 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~----------~------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~   74 (385)
                      .|+++|+.|+|||||+++|+...-..          .      .....|.+.........+++..+++|||||+.++...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            48999999999999999987632110          0      0123445555566666778899999999999888777


Q ss_pred             hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEE
Q psy125           75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI  148 (385)
Q Consensus        75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  148 (385)
                      ...+++.+|++++|+|+.+....+ ...+...+..  .++|+++++||+|+..........++....+..++.+
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~--~~~P~iivvNK~D~~~a~~~~~~~~i~~~~~~~~~~~  151 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK--LNIPTIIFVNKIDRAGADLEKVYQEIKEKLSSDIVPM  151 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH--cCCCEEEEEECccccCCCHHHHHHHHHHHHCCCeEEE
Confidence            888899999999999998864432 2233333332  4789999999999875333222233333334444433

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.53  E-value=5.9e-15  Score=126.23  Aligned_cols=157  Identities=26%  Similarity=0.242  Sum_probs=97.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      -++|+||||+|||||++.+++                  ..++..+.+.+......+...  ....+|.+|..    -+|
T Consensus        32 ~~~iiGPNGaGKSTLlK~iLG------------------ll~p~~G~i~~~g~~~~~~~~--~~~IgYVPQ~~----~~d   87 (254)
T COG1121          32 ITALIGPNGAGKSTLLKAILG------------------LLKPSSGEIKIFGKPVRKRRK--RLRIGYVPQKS----SVD   87 (254)
T ss_pred             EEEEECCCCCCHHHHHHHHhC------------------CCcCCcceEEEcccccccccc--CCeEEEcCccc----ccC
Confidence            479999999999999999888                  566666666665444333221  23456666642    122


Q ss_pred             CCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhcC
Q psy125           91 VTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~  170 (385)
                      .+-|.+..++   .  .........++--.++.|...-....+...+......++-+     .+|++.++..||+++..+
T Consensus        88 ~~fP~tV~d~---V--~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~-----LSGGQ~QRV~lARAL~~~  157 (254)
T COG1121          88 RSFPITVKDV---V--LLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGE-----LSGGQKQRVLLARALAQN  157 (254)
T ss_pred             CCCCcCHHHH---H--HccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccc-----cCcHHHHHHHHHHHhccC
Confidence            2222222111   1  11112333343334555421111111111222222334444     459999999999999999


Q ss_pred             CCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          171 PNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       171 ~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      |++++     +|||+.+.|+..+..+.+.|.+...+
T Consensus       158 p~lll-----LDEP~~gvD~~~~~~i~~lL~~l~~e  188 (254)
T COG1121         158 PDLLL-----LDEPFTGVDVAGQKEIYDLLKELRQE  188 (254)
T ss_pred             CCEEE-----ecCCcccCCHHHHHHHHHHHHHHHHC
Confidence            99999     99999999999999999999988776

>PRK12735 elongation factor Tu; Reviewed

Probab=99.53  E-value=2.5e-13  Score=127.42  Aligned_cols=157  Identities=13%  Similarity=0.025  Sum_probs=104.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC------CCC--------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTG------EFE--------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG   72 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~------~~~--------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~   72 (385)
                      .+.++|+++|+.++|||||+++|+..      ...        .......|.|.+........+...+.++||||+..+.
T Consensus        10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (396)
T PRK12735         10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV   89 (396)
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence            56799999999999999999998752      110        1112356778777766666677889999999998776


Q ss_pred             cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEE-EEEeCCCCcchhh-----hHHHHHHHHhc-----
Q psy125           73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV-LCGNKVDIKDRKV-----KAKSIVFHRKK-----  141 (385)
Q Consensus        73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~i-lv~nK~Dl~~~~~-----~~~~~~~~~~~-----  141 (385)
                      ......+.++|++++|+|+.+....+. ...+..+.  ..++|.+ +++||+|+.....     ..+...+....     
T Consensus        90 ~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~--~~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~  166 (396)
T PRK12735         90 KNMITGAAQMDGAILVVSAADGPMPQT-REHILLAR--QVGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGD  166 (396)
T ss_pred             HHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHH--HcCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcC
Confidence            655666778999999999987533222 12222222  1467755 6799999864322     11233333332     


Q ss_pred             CCeEEEEcCCCCC----------ChHHHHHHHHHH
Q psy125          142 NLQYYDISAKSNY----------NFEKPFLWLARK  166 (385)
Q Consensus       142 ~~~~~~~Sa~~~~----------gi~~l~~~i~~~  166 (385)
                      ..+++++|+.++.          ++..++..|...
T Consensus       167 ~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        167 DTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             ceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence            2578999999874          455555555543

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.52  E-value=3.6e-13  Score=132.02  Aligned_cols=155  Identities=12%  Similarity=0.068  Sum_probs=103.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccceeeeEEEEEEeCC-eeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +-|+++|+.++|||||+++|.+-.... ......|.|.+........ .+..+.+|||||++++.......+.++|++++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            358999999999999999966422111 1122346666554433322 34568999999999887666677889999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhh----hHHHHHHHHhcC---CeEEEEcCCCCCChHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV----KAKSIVFHRKKN---LQYYDISAKSNYNFEKP  159 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~----~~~~~~~~~~~~---~~~~~~Sa~~~~gi~~l  159 (385)
                      |+|+++....+.. ..+. +... .+.| +++|+||+|+.+...    ..++..+....+   .+++++|++++.|++++
T Consensus        81 VVda~eg~~~qT~-ehl~-il~~-lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L  157 (614)
T PRK10512         81 VVACDDGVMAQTR-EHLA-ILQL-TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDAL  157 (614)
T ss_pred             EEECCCCCcHHHH-HHHH-HHHH-cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHH
Confidence            9999875332221 1222 2222 2455 579999999865322    222333333322   57999999999999999


Q ss_pred             HHHHHHHH
Q psy125          160 FLWLARKL  167 (385)
Q Consensus       160 ~~~i~~~l  167 (385)
                      +..|....
T Consensus       158 ~~~L~~~~  165 (614)
T PRK10512        158 REHLLQLP  165 (614)
T ss_pred             HHHHHHhh
Confidence            99998754

>KOG1489|consensus

Probab=99.52  E-value=2.7e-13  Score=116.95  Aligned_cols=152  Identities=16%  Similarity=0.166  Sum_probs=104.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-EEEEEEeCCCccccccch----hh---hhccC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQEKFGGLR----DG---YYIQG   82 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-~~~~i~Dt~g~~~~~~~~----~~---~~~~~   82 (385)
                      .|+|||-||+|||||+|+|..-+  +.+..+..+|..+....+..+. ..+++-|.||......+.    ..   .+..+
T Consensus       198 dvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            57999999999999999955533  3555666677777666555443 349999999976443332    22   34679


Q ss_pred             cEEEEEEeCCCh---hhhhcHHHHHHHH---HHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcC-CeEEEEcCCCCCC
Q psy125           83 QCAIIMFDVTSR---ITYKNVPNWHRDL---VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN-LQYYDISAKSNYN  155 (385)
Q Consensus        83 d~illV~d~~~~---~~~~~~~~~~~~l---~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~g  155 (385)
                      ..+++|+|++.+   .-++.+..+..++   .+...+.|.++|+||+|+.+.+... +.++.+... ..++++||+.+.|
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~lq~~~V~pvsA~~~eg  354 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRLQNPHVVPVSAKSGEG  354 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH-HHHHHHHcCCCcEEEeeeccccc
Confidence            999999999988   4454444333333   3345688999999999986433221 233443333 3599999999999


Q ss_pred             hHHHHHHHHH
Q psy125          156 FEKPFLWLAR  165 (385)
Q Consensus       156 i~~l~~~i~~  165 (385)
                      +++++..|-.
T Consensus       355 l~~ll~~lr~  364 (366)
T KOG1489|consen  355 LEELLNGLRE  364 (366)
T ss_pred             hHHHHHHHhh
Confidence            9988876643

>KOG0072|consensus

Probab=99.52  E-value=5.6e-14  Score=106.54  Aligned_cols=157  Identities=20%  Similarity=0.323  Sum_probs=115.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||.++|--|+||||++-++-.+ ......|++|.......+    ++.++.+||.+|+-..+..|+.|+.+.+++|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvg-evvttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVG-EVVTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccC-cccccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            6789999999999999998884333 334445677766554444    78999999999999999999999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHH-----HHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      |+|.+|.....-....+..+..  ...+..+++++||.|........+..     .-.+.....++..||.++.|+++.+
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~  171 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM  171 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence            9999987654333322222222  23466778899999976543333222     1223344689999999999999999


Q ss_pred             HHHHHHHhc
Q psy125          161 LWLARKLIG  169 (385)
Q Consensus       161 ~~i~~~l~~  169 (385)
                      +++.+-+..
T Consensus       172 DWL~~~l~~  180 (182)
T KOG0072|consen  172 DWLQRPLKS  180 (182)
T ss_pred             HHHHHHHhc
Confidence            999987643

>COG1162 Predicted GTPases [General function prediction only]

Probab=99.52  E-value=4e-13  Score=117.20  Aligned_cols=150  Identities=24%  Similarity=0.228  Sum_probs=109.2

Q ss_pred             chhhhhccCcEEEEEEeCCChhh-hhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH--HHHHHHHhcCCeEEEEcC
Q psy125           74 LRDGYYIQGQCAIIMFDVTSRIT-YKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISA  150 (385)
Q Consensus        74 ~~~~~~~~~d~illV~d~~~~~~-~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa  150 (385)
                      +.+.-+.+.|-+++|+.+.+|.- ...+++++-...  ..++..++|+||+|+.+.....  +....+...+++++.+|+
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae--~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~  149 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAE--AGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSA  149 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHH--HcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecC
Confidence            33444556777788888877753 333444443332  2577888889999998765544  456678889999999999


Q ss_pred             CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEE
Q psy125          151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLV  230 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  230 (385)
                      +++.|++++...+...                                                           -.+++
T Consensus       150 ~~~~~~~~l~~~l~~~-----------------------------------------------------------~svl~  170 (301)
T COG1162         150 KNGDGLEELAELLAGK-----------------------------------------------------------ITVLL  170 (301)
T ss_pred             cCcccHHHHHHHhcCC-----------------------------------------------------------eEEEE
Confidence            9999988766543332                                                           37899


Q ss_pred             CCCCCCHHHHHHHHhc------CccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125          231 GDGGTGKTTFVKRHLT------GEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG  287 (385)
Q Consensus       231 G~~~vgks~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  287 (385)
                      |.+|||||||+|++..      ++.++.....-+||.+...+.+.+++   .|+||||...+.
T Consensus       171 GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~  230 (301)
T COG1162         171 GQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLG  230 (301)
T ss_pred             CCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCccC
Confidence            9999999999999773      34455555666788889999886555   599999987665

>KOG3883|consensus

Probab=99.51  E-value=1.3e-13  Score=105.60  Aligned_cols=120  Identities=18%  Similarity=0.291  Sum_probs=98.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCcc--ccccccceeeEEEEEEEE-eCCeeEEEEEeeCCCcccc-CcccccccccCc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFH-TNRGAIRFNVWDTAGQEKF-GGLRDGYYIQGQ  298 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~Dt~G~~~~-~~~~~~~~~~~~  298 (385)
                      ...|+++.|..+||||+++.+++-+..  ...+.+|+...+ ...+. -.+..-.+.|+||+|...+ ..+..+|+.-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-VASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-eEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            357999999999999999999885543  345678875444 34343 3445567899999999888 678888999999


Q ss_pred             EEEEEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHH
Q psy125          299 CAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       299 ~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      +|+||||..|++||+.                                                 .+|++|++...+-|.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            9999999999999998                                                 799999999999999


Q ss_pred             HHHHHHHHhcCCCc
Q psy125          330 FLWLARKLIGDPNL  343 (385)
Q Consensus       330 f~~l~~~i~~~~~~  343 (385)
                      |..++..+....+.
T Consensus       167 f~~l~~rl~~pqsk  180 (198)
T KOG3883|consen  167 FTYLASRLHQPQSK  180 (198)
T ss_pred             HHHHHHhccCCccc
Confidence            99999988665443

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.51  E-value=3.6e-14  Score=138.71  Aligned_cols=115  Identities=17%  Similarity=0.209  Sum_probs=92.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC-------cccccccc------ceeeEEEEEEEEe-----CCeeEEEEEeeCCCcccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTG-------EFEKKYVA------TLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEKF  286 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~-------~~~~~~~~------~~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~  286 (385)
                      -+++++|..++|||||+++++..       .+...+..      ..|.+.....+.+     ++..+.+.||||||+..|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            47999999999999999999853       23333333      2366666555444     455688999999999999


Q ss_pred             CcccccccccCcEEEEEEeCCChhhhhh---------------------------------------------hheeccc
Q psy125          287 GGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAK  321 (385)
Q Consensus       287 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak  321 (385)
                      ...+..+++.||++|+|||+++..+++.                                             ++++||+
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAk  163 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILASAK  163 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEeecc
Confidence            9999999999999999999998655544                                             4789999


Q ss_pred             cCCCchHHHHHHHHHHhc
Q psy125          322 SNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       322 ~~~~v~~~f~~l~~~i~~  339 (385)
                      +|.||+++|++|++.+..
T Consensus       164 tG~GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       164 TGIGIEEILEAIVKRVPP  181 (595)
T ss_pred             CCCCHHHHHHHHHHhCCC
Confidence            999999999999998754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>KOG0071|consensus

Probab=99.51  E-value=8.2e-14  Score=105.13  Aligned_cols=114  Identities=25%  Similarity=0.453  Sum_probs=96.6

Q ss_pred             cCCCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCc
Q psy125          219 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ  298 (385)
Q Consensus       219 ~~~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~  298 (385)
                      .....+++++++|-.++|||+++..+..++ +....||.|....+...    +.+++++||..||++.+.+|.+||.+..
T Consensus        12 ~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtq   86 (180)
T KOG0071|consen   12 IFGNKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQ   86 (180)
T ss_pred             HhCcccceEEEEecccCCceehhhHHhcCC-CcccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCc
Confidence            344567999999999999999999976554 45667887766554443    6778999999999999999999999999


Q ss_pred             EEEEEEeCCChhhhhh----------------------------------------------------hheeccccCCCc
Q psy125          299 CAIIMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNF  326 (385)
Q Consensus       299 ~~ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v  326 (385)
                      |+|||.|..+++..++                                                    ...|||.+|+++
T Consensus        87 glIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL  166 (180)
T KOG0071|consen   87 GLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGL  166 (180)
T ss_pred             eEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhH
Confidence            9999999999988777                                                    577999999999


Q ss_pred             hHHHHHHHHHH
Q psy125          327 EKPFLWLARKL  337 (385)
Q Consensus       327 ~~~f~~l~~~i  337 (385)
                      .|.|.||....
T Consensus       167 ~eglswlsnn~  177 (180)
T KOG0071|consen  167 KEGLSWLSNNL  177 (180)
T ss_pred             HHHHHHHHhhc
Confidence            99999998754

>PRK12736 elongation factor Tu; Reviewed

Probab=99.51  E-value=4.8e-13  Score=125.41  Aligned_cols=158  Identities=15%  Similarity=0.054  Sum_probs=105.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFE--------------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG   72 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~--------------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~   72 (385)
                      .+.++|+++|+.++|||||+++|++....              .......|.|.+........+...+.++||||+.++.
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~   89 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV   89 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence            56789999999999999999998753110              0112256778877777776677889999999998776


Q ss_pred             cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhhh-----HHHHHHHHhcC----
Q psy125           73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKVK-----AKSIVFHRKKN----  142 (385)
Q Consensus        73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~----  142 (385)
                      ......+..+|++++|+|++.....+.. ..+..+..  .++| +++++||+|+.+....     .+...+....+    
T Consensus        90 ~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~  166 (394)
T PRK12736         90 KNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGD  166 (394)
T ss_pred             HHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcC
Confidence            6555566789999999999875332221 22222222  3677 6788999998643221     12333333332    


Q ss_pred             -CeEEEEcCCCCC--------ChHHHHHHHHHHH
Q psy125          143 -LQYYDISAKSNY--------NFEKPFLWLARKL  167 (385)
Q Consensus       143 -~~~~~~Sa~~~~--------gi~~l~~~i~~~l  167 (385)
                       .+++++|+.++.        ++..++..+.+.+
T Consensus       167 ~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        167 DIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             CccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence             478999999973        4555555555543

>cd01894 EngA1 EngA1 subfamily

Probab=99.51  E-value=3.5e-14  Score=116.10  Aligned_cols=109  Identities=19%  Similarity=0.140  Sum_probs=79.5

Q ss_pred             EEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc--------ccccccccCcE
Q psy125          228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYYIQGQC  299 (385)
Q Consensus       228 ~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~~~~~  299 (385)
                      +++|.+|||||+|+++++.... .......+++...........+..+.+|||||...+..        ....+++++|+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~   79 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRD-AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV   79 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcE-EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence            4789999999999999886542 12223334444333333333346789999999987654        22346789999


Q ss_pred             EEEEEeCCChhhhhh----------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125          300 AIIMFDVTSRITYKN----------------------------------------YYDISAKSNYNFEKPFLWLARKL  337 (385)
Q Consensus       300 ~ilv~d~~~~~s~~~----------------------------------------~~e~Sak~~~~v~~~f~~l~~~i  337 (385)
                      +++|+|.+++.++.+                                        ++++||++|.||+++|+++++.+
T Consensus        80 ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894          80 ILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             EEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence            999999987655433                                        68999999999999999999764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG0462|consensus

Probab=99.50  E-value=4.7e-13  Score=123.20  Aligned_cols=177  Identities=17%  Similarity=0.198  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC--C-----------CcccccceeeeEEEEEEeCCee---EEEEEEeCCCcccccc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEF--E-----------KKYVATLGVEVHPLVFHTNRGA---IRFNVWDTAGQEKFGG   73 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~--~-----------~~~~~~~g~t~~~~~~~~~~~~---~~~~i~Dt~g~~~~~~   73 (385)
                      -+++||-+-..|||||..+++.-.-  .           -......|+|.........+..   +.++++||||+-+|..
T Consensus        61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~  140 (650)
T KOG0462|consen   61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG  140 (650)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence            4689999999999999999874211  1           1123567778777665555444   9999999999999998


Q ss_pred             chhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHHhcCCeEEEEcC
Q psy125           74 LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISA  150 (385)
Q Consensus        74 ~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa  150 (385)
                      .....+..++++|+|+|+......+.+..++..+.   .++.+|.|+||+|+.....   ..+..++......+++.+||
T Consensus       141 EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe---~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSA  217 (650)
T KOG0462|consen  141 EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE---AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVSA  217 (650)
T ss_pred             eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH---cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEe
Confidence            88889999999999999998766665555555443   5888999999999976443   44555566666678999999


Q ss_pred             CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                      ++|.|+++++.+|++.              ..+|....|.+.+..+.+...+.
T Consensus       218 K~G~~v~~lL~AII~r--------------VPpP~~~~d~plr~Lifds~yD~  256 (650)
T KOG0462|consen  218 KTGLNVEELLEAIIRR--------------VPPPKGIRDAPLRMLIFDSEYDE  256 (650)
T ss_pred             ccCccHHHHHHHHHhh--------------CCCCCCCCCcchHHHhhhhhhhh
Confidence            9999999999988887              56677777777777776655554

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.50  E-value=1.2e-12  Score=107.90  Aligned_cols=172  Identities=15%  Similarity=0.107  Sum_probs=91.9

Q ss_pred             cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           83 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      |++++|+|+.++.+..+ ..+...+.-...+.|+++|+||+|+.+......+...+......+...|+... +...+...
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~kp~IlVlNK~DL~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~   78 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGNKKLVLVLNKIDLVPKENVEKWLKYLRREFPTVAFKASTQS-QKKNLGQK   78 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHHhccCCCCEEEEEehhhcCCHHHHHHHHHHHHhhCCEEEEEecccc-cccchhhc
Confidence            68999999998755433 12222211112468999999999997666555555555444433333333221 11111000


Q ss_pred             HHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHHHH
Q psy125          163 LARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVK  242 (385)
Q Consensus       163 i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~~~  242 (385)
                      ..+.   +.....     +...   ........+.+.+++....            ......++++++|.+||||||++|
T Consensus        79 ~~~~---~~~~~~-----l~~~---~~~~~~~~l~~~~~~~~~~------------~~~~~~~~~~~vG~pnvGKSslin  135 (172)
T cd04178          79 SVKV---EAASAD-----LLRS---SVCFGADCLLKLLKNYSRN------------KDIKTSITVGVVGFPNVGKSSLIN  135 (172)
T ss_pred             cccc---chhhhh-----hhhh---ccccCHHHHHHHHHHHhhc------------cccccCcEEEEEcCCCCCHHHHHH
Confidence            0000   000000     0000   0000111111222221111            111234789999999999999999


Q ss_pred             HHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125          243 RHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ  283 (385)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~  283 (385)
                      ++... -....++.+|+|.....+.++.   .+.++||||.
T Consensus       136 ~l~~~-~~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPGi  172 (172)
T cd04178         136 SLKRS-RACNVGATPGVTKSMQEVHLDK---KVKLLDSPGI  172 (172)
T ss_pred             HHhCc-ccceecCCCCeEcceEEEEeCC---CEEEEECcCC
Confidence            97744 3456677889999888777653   3689999994

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PRK13796 GTPase YqeH; Provisional

Probab=99.50  E-value=4.5e-13  Score=123.89  Aligned_cols=143  Identities=20%  Similarity=0.236  Sum_probs=100.2

Q ss_pred             ccCc-EEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHH----HHHHHhcCC---eEEEEcC
Q psy125           80 IQGQ-CAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKS----IVFHRKKNL---QYYDISA  150 (385)
Q Consensus        80 ~~~d-~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~----~~~~~~~~~---~~~~~Sa  150 (385)
                      ...+ .+++|+|+.+...     .|...+.+...+.|+++|+||+|+..... ....    ..++...+.   .++.+||
T Consensus        67 ~~~~~lIv~VVD~~D~~~-----s~~~~L~~~~~~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSA  141 (365)
T PRK13796         67 GDSDALVVNVVDIFDFNG-----SWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISA  141 (365)
T ss_pred             cccCcEEEEEEECccCCC-----chhHHHHHHhCCCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEEC
Confidence            4444 8889999987542     34444444445789999999999964322 1111    222334443   6899999


Q ss_pred             CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEE
Q psy125          151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLV  230 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  230 (385)
                      +++.|+++++..|.+...                                                       ..+++++
T Consensus       142 k~g~gI~eL~~~I~~~~~-------------------------------------------------------~~~v~vv  166 (365)
T PRK13796        142 QKGHGIDELLEAIEKYRE-------------------------------------------------------GRDVYVV  166 (365)
T ss_pred             CCCCCHHHHHHHHHHhcC-------------------------------------------------------CCeEEEE
Confidence            999999998887765421                                                       1368999


Q ss_pred             CCCCCCHHHHHHHHhcCc----cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc
Q psy125          231 GDGGTGKTTFVKRHLTGE----FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK  285 (385)
Q Consensus       231 G~~~vgks~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~  285 (385)
                      |.+|||||||+|+++...    -....++.+|+|.....+.++++.   .++||||...
T Consensus       167 G~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~---~l~DTPGi~~  222 (365)
T PRK13796        167 GVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGS---FLYDTPGIIH  222 (365)
T ss_pred             cCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCc---EEEECCCccc
Confidence            999999999999987432    122356778999998888876543   7999999743

>cd04169 RF3 RF3 subfamily

Probab=99.50  E-value=5.5e-13  Score=118.00  Aligned_cols=117  Identities=20%  Similarity=0.219  Sum_probs=82.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-C-------------cc------cccceeeeEEEEEEeCCeeEEEEEEeCCCcc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFE-K-------------KY------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQE   69 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~-~-------------~~------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~   69 (385)
                      -.|+|+|+.|+|||||+++|+...-. .             .+      ....|.+.........++++.+++|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            37999999999999999998742110 0             00      0112344445566777888999999999998


Q ss_pred             ccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125           70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK  129 (385)
Q Consensus        70 ~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~  129 (385)
                      ++.......++.+|++++|+|+++...... ..+.....  ..++|+++++||+|+....
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~~-~~i~~~~~--~~~~P~iivvNK~D~~~a~  139 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQT-RKLFEVCR--LRGIPIITFINKLDREGRD  139 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHHH-HHHHHHHH--hcCCCEEEEEECCccCCCC
Confidence            877666777899999999999987533221 22222222  2478999999999986543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.50  E-value=6.1e-13  Score=124.93  Aligned_cols=146  Identities=14%  Similarity=0.054  Sum_probs=99.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCC------C--------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEF------E--------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~------~--------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~   71 (385)
                      ..+.++|+++|+.++|||||+++|++...      .        .......|.|.+........+...+.+|||||++++
T Consensus         9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f   88 (394)
T TIGR00485         9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (394)
T ss_pred             CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHH
Confidence            46789999999999999999999873200      0        011234677888777777777788999999999887


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEE-EEEeCCCCcchhh-----hHHHHHHHHhcC---
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV-LCGNKVDIKDRKV-----KAKSIVFHRKKN---  142 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~i-lv~nK~Dl~~~~~-----~~~~~~~~~~~~---  142 (385)
                      .......+.++|++++|+|+......+.. ..+..+..  .++|.+ +++||+|+.+...     ..+...+....+   
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~  165 (394)
T TIGR00485        89 VKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPG  165 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            65555556788999999999874332221 22222222  356655 6899999865322     123334444333   


Q ss_pred             --CeEEEEcCCCCC
Q psy125          143 --LQYYDISAKSNY  154 (385)
Q Consensus       143 --~~~~~~Sa~~~~  154 (385)
                        .+++++|+.++.
T Consensus       166 ~~~~ii~vSa~~g~  179 (394)
T TIGR00485       166 DDTPIIRGSALKAL  179 (394)
T ss_pred             cCccEEECcccccc
Confidence              578999998875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.49  E-value=1.2e-13  Score=113.14  Aligned_cols=106  Identities=16%  Similarity=0.119  Sum_probs=79.1

Q ss_pred             EECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc------cccccc--cCcEE
Q psy125          229 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL------RDGYYI--QGQCA  300 (385)
Q Consensus       229 ~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~~~~~--~~~~~  300 (385)
                      ++|.+|||||++++++....+.....+....+.....+.+++  ..+.+|||||+..+...      ...++.  ++|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            579999999999999886654333323322333344444553  56899999999887653      455564  99999


Q ss_pred             EEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          301 IIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       301 ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |+|+|+++..+...                                         ++++||++|.|+.++|.++.+.
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~  155 (158)
T cd01879          79 VNVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAEL  155 (158)
T ss_pred             EEEeeCCcchhHHHHHHHHHHcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHH
Confidence            99999998665333                                         7999999999999999999875

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.49  E-value=7.7e-14  Score=108.53  Aligned_cols=89  Identities=25%  Similarity=0.440  Sum_probs=71.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccc--cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFE--KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      ||+++|.+|||||+|+++++...+.  ..+.++.+.+.......+......+.+||++|++.+...+...+.++|++|+|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999988776  23333444455555666677777799999999999888878789999999999


Q ss_pred             EeCCChhhhhh
Q psy125          304 FDVTSRITYKN  314 (385)
Q Consensus       304 ~d~~~~~s~~~  314 (385)
                      ||++++.||+.
T Consensus        81 ~D~s~~~s~~~   91 (119)
T PF08477_consen   81 YDLSDPESLEY   91 (119)
T ss_dssp             EECCGHHHHHH
T ss_pred             EcCCChHHHHH
Confidence            99999999976

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.49  E-value=1.2e-13  Score=130.50  Aligned_cols=116  Identities=19%  Similarity=0.197  Sum_probs=87.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc--------cccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR--------DGYY  294 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~  294 (385)
                      ..+|++++|.+||||||++|+++...+ ..+...+|+++......+...+..+.+|||||+..+....        ..++
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~  280 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI  280 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence            458999999999999999999886542 2233445566554443333334567999999997654332        3578


Q ss_pred             ccCcEEEEEEeCCChhhhhh-------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125          295 IQGQCAIIMFDVTSRITYKN-------------------------------------YYDISAKSNYNFEKPFLWLARKL  337 (385)
Q Consensus       295 ~~~~~~ilv~d~~~~~s~~~-------------------------------------~~e~Sak~~~~v~~~f~~l~~~i  337 (385)
                      +++|++|+|||++++.++++                                     |+++|||+ .||+++|..|.+.+
T Consensus       281 ~~aD~il~V~D~s~~~s~~~~~l~~~~~~~~piIlV~NK~Dl~~~~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i  359 (442)
T TIGR00450       281 KQADLVIYVLDASQPLTKDDFLIIDLNKSKKPFILVLNKIDLKINSLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKI  359 (442)
T ss_pred             hhCCEEEEEEECCCCCChhHHHHHHHhhCCCCEEEEEECccCCCcchhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHH
Confidence            99999999999999887654                                     47899998 59999999999988


Q ss_pred             hcC
Q psy125          338 IGD  340 (385)
Q Consensus       338 ~~~  340 (385)
                      .+.
T Consensus       360 ~~~  362 (442)
T TIGR00450       360 NAF  362 (442)
T ss_pred             HHH
Confidence            754

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.49  E-value=1.7e-13  Score=111.91  Aligned_cols=112  Identities=17%  Similarity=0.173  Sum_probs=83.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc--------ccccccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYIQ  296 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~~  296 (385)
                      ++++++|++|+|||++++++....+. ......+++..............+.+|||||...+...        ...++..
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~   80 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDRA-IVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE   80 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCceE-eccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence            58999999999999999998865432 22233344433332222223557899999998765432        1235679


Q ss_pred             CcEEEEEEeCCChhhhhh-----------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125          297 GQCAIIMFDVTSRITYKN-----------------------------------YYDISAKSNYNFEKPFLWLARKL  337 (385)
Q Consensus       297 ~~~~ilv~d~~~~~s~~~-----------------------------------~~e~Sak~~~~v~~~f~~l~~~i  337 (385)
                      +|++++|+|++++.+..+                                   ++++||+++.|+++++.+|...+
T Consensus        81 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164          81 ADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhhcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            999999999998877766                                   89999999999999999998754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>CHL00071 tufA elongation factor Tu

Probab=99.49  E-value=8e-13  Score=124.56  Aligned_cols=146  Identities=15%  Similarity=0.050  Sum_probs=100.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCC--------------CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEF--------------EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG   72 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~--------------~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~   72 (385)
                      .+.++|+++|+.++|||||+++|++..-              ........|.|++........+...+.++||||+..+.
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~   89 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV   89 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence            5679999999999999999999886411              01112236778877766676777889999999988776


Q ss_pred             cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhhh-----HHHHHHHHhcC----
Q psy125           73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKVK-----AKSIVFHRKKN----  142 (385)
Q Consensus        73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~----  142 (385)
                      ......+..+|++++|+|+......+.. ..+..+..  .++| +++++||+|+.+....     .++..+....+    
T Consensus        90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~-~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~  166 (409)
T CHL00071         90 KNMITGAAQMDGAILVVSAADGPMPQTK-EHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGD  166 (409)
T ss_pred             HHHHHHHHhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            6666677899999999999865332221 22222221  4677 6789999998753321     23333333322    


Q ss_pred             -CeEEEEcCCCCCC
Q psy125          143 -LQYYDISAKSNYN  155 (385)
Q Consensus       143 -~~~~~~Sa~~~~g  155 (385)
                       .+++++|+.++.+
T Consensus       167 ~~~ii~~Sa~~g~n  180 (409)
T CHL00071        167 DIPIVSGSALLALE  180 (409)
T ss_pred             cceEEEcchhhccc
Confidence             5789999988764

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.49  E-value=1.1e-13  Score=117.78  Aligned_cols=112  Identities=13%  Similarity=0.147  Sum_probs=86.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc----------ccCccccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE----------KFGGLRDG  292 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~  292 (385)
                      ...+++++|.+|+||||++++++.+.+...+.+++|.+........   ...+.||||||..          ++..+...
T Consensus        23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~   99 (196)
T PRK00454         23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE   99 (196)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence            5689999999999999999999987777788888887776555443   2568999999953          33344455


Q ss_pred             ccccC---cEEEEEEeCCChhhhhh----------------------------------------------hheeccccC
Q psy125          293 YYIQG---QCAIIMFDVTSRITYKN----------------------------------------------YYDISAKSN  323 (385)
Q Consensus       293 ~~~~~---~~~ilv~d~~~~~s~~~----------------------------------------------~~e~Sak~~  323 (385)
                      |++.+   +++++|+|.+++.+..+                                              ++++||++|
T Consensus       100 ~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~  179 (196)
T PRK00454        100 YLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKK  179 (196)
T ss_pred             HHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCC
Confidence            66544   67888999887554432                                              788999999


Q ss_pred             CCchHHHHHHHHHH
Q psy125          324 YNFEKPFLWLARKL  337 (385)
Q Consensus       324 ~~v~~~f~~l~~~i  337 (385)
                      .|++++|..|.+.+
T Consensus       180 ~gi~~l~~~i~~~~  193 (196)
T PRK00454        180 QGIDELRAAIAKWL  193 (196)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999988765

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.48  E-value=8.3e-13  Score=119.09  Aligned_cols=62  Identities=21%  Similarity=0.269  Sum_probs=44.9

Q ss_pred             CCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH-HHHHHHhcCCCccc
Q psy125          113 NIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL-WLARKLIGDPNLEF  175 (385)
Q Consensus       113 ~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~-~i~~~l~~~~~~~~  175 (385)
                      .+|+++++||.|+........... .......++.+||+.+.++.++.. .+...+...|.+.+
T Consensus       214 ~KPvI~VlNK~Dl~~~~~~~~~l~-~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~  276 (318)
T cd01899         214 SKPMVIAANKADIPDAENNISKLR-LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEI  276 (318)
T ss_pred             CCcEEEEEEHHHccChHHHHHHHH-hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCcee
Confidence            479999999999754332222111 222355899999999999999997 69999887766655

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.48  E-value=5.2e-13  Score=118.22  Aligned_cols=114  Identities=20%  Similarity=0.170  Sum_probs=84.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC--C--C------------cccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEF--E--K------------KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL   74 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~--~--~------------~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~   74 (385)
                      .|+++|++|+|||||+++|+...-  .  .            ......|+|.........+++..++++||||..++...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            489999999999999999874211  0  0            01134577777777777788899999999999877777


Q ss_pred             hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125           75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~  127 (385)
                      +...+..+|++++|+|+.+....+. ...+..+..  .++|+++++||+|+..
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--~~~p~ivviNK~D~~~  130 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCCCC
Confidence            7888999999999999987543222 122222222  4789999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd04167 Snu114p Snu114p subfamily

Probab=99.48  E-value=1e-12  Score=113.14  Aligned_cols=113  Identities=20%  Similarity=0.273  Sum_probs=79.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------------cccceeeeEEEEEEe-----CCeeEEEEEEeCCCc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKY-----------------VATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQ   68 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~-----------------~~~~g~t~~~~~~~~-----~~~~~~~~i~Dt~g~   68 (385)
                      +|+++|+.|+|||||+++|+........                 ....|.+........     +...+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            5899999999999999998875432210                 112333332222221     345688999999999


Q ss_pred             cccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125           69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK  126 (385)
Q Consensus        69 ~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~  126 (385)
                      .++......++..+|++++|+|+.+...... ..++.....  .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence            9887777788899999999999987655432 233333322  468999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK04213 GTP-binding protein; Provisional

Probab=99.48  E-value=6.2e-14  Score=119.73  Aligned_cols=112  Identities=24%  Similarity=0.234  Sum_probs=81.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCC-----------ccccCcccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG-----------QEKFGGLRD  291 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G-----------~~~~~~~~~  291 (385)
                      ...+|+++|.+||||||+++++.+..+...+  .+|+++....+...    .+.+|||||           +++++..+.
T Consensus         8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~--~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (201)
T PRK04213          8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGK--RPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIV   81 (201)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccCC--CCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHH
Confidence            3579999999999999999999877765433  34667665555433    478999999           566766666


Q ss_pred             cccc----cCcEEEEEEeCCChhhh--------------------hh------------------------------h--
Q psy125          292 GYYI----QGQCAIIMFDVTSRITY--------------------KN------------------------------Y--  315 (385)
Q Consensus       292 ~~~~----~~~~~ilv~d~~~~~s~--------------------~~------------------------------~--  315 (385)
                      .|++    .++++++|+|.++...+                    ..                              .  
T Consensus        82 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  161 (201)
T PRK04213         82 RYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRDEVLDEIAERLGLYP  161 (201)
T ss_pred             HHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHHHHHHHHHHHhcCCc
Confidence            6664    34677788887542110                    00                              2  


Q ss_pred             ---------heeccccCCCchHHHHHHHHHHhcCC
Q psy125          316 ---------YDISAKSNYNFEKPFLWLARKLIGDP  341 (385)
Q Consensus       316 ---------~e~Sak~~~~v~~~f~~l~~~i~~~~  341 (385)
                               ++|||++| ||+++|.+|++.+....
T Consensus       162 ~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        162 PWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             cccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence                     68999999 99999999999876544

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.47  E-value=3.1e-13  Score=104.61  Aligned_cols=107  Identities=21%  Similarity=0.239  Sum_probs=72.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc---------chhhhhcc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---------LRDGYYIQ   81 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~---------~~~~~~~~   81 (385)
                      ||+|+|.+|+|||||+|+|++.. ........+.|+.............+.++||||......         .....+..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKK-LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK   79 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTST-SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred             CEEEECCCCCCHHHHHHHHhccc-cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence            79999999999999999977633 444555567777665444333556667999999753211         12233478


Q ss_pred             CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeC
Q psy125           82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNK  122 (385)
Q Consensus        82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK  122 (385)
                      +|++++|+|+.++.. ......+..+.   .+.|+++|+||
T Consensus        80 ~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   80 SDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             ESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred             CCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence            999999999877322 11223334442   68999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.46  E-value=1.5e-13  Score=126.13  Aligned_cols=110  Identities=16%  Similarity=0.101  Sum_probs=79.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccc--cccceeeEEEEEEEEeCCeeEEEEEeeCCCccc---------cCcccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK--YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK---------FGGLRD  291 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~  291 (385)
                      ...+|+++|.+|||||||+|++....+...  ...|.  +.....+.+.+ +..+.+|||||+.+         |.... 
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~--d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-  263 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATL--DPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-  263 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCcccc--CCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-
Confidence            348999999999999999999886654211  12222  22233444432 34689999999832         22211 


Q ss_pred             cccccCcEEEEEEeCCChhhhhh------------------------------------------hheeccccCCCchHH
Q psy125          292 GYYIQGQCAIIMFDVTSRITYKN------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       292 ~~~~~~~~~ilv~d~~~~~s~~~------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      .++.++|++|+|||++++.++++                                          +++|||++|.|++++
T Consensus       264 e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL  343 (351)
T TIGR03156       264 EEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLL  343 (351)
T ss_pred             HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHH
Confidence            24789999999999999877643                                          378999999999999


Q ss_pred             HHHHHHH
Q psy125          330 FLWLARK  336 (385)
Q Consensus       330 f~~l~~~  336 (385)
                      +.+|.+.
T Consensus       344 ~~~I~~~  350 (351)
T TIGR03156       344 LEAIAER  350 (351)
T ss_pred             HHHHHhh
Confidence            9998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.46  E-value=1.3e-13  Score=116.37  Aligned_cols=113  Identities=21%  Similarity=0.160  Sum_probs=86.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccc--------------eeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVAT--------------LGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD  291 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~  291 (385)
                      +|+++|.+|+|||++++.++...+...+..+              .+.+..............+.+|||||+..+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            4899999999999999998876555433221              12233322333333456789999999998888888


Q ss_pred             cccccCcEEEEEEeCCChhhhhh---------------------------------------------------------
Q psy125          292 GYYIQGQCAIIMFDVTSRITYKN---------------------------------------------------------  314 (385)
Q Consensus       292 ~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------------------  314 (385)
                      .+++.+|++++|+|++++.+.+.                                                         
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGL  160 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCC
Confidence            89999999999999987654432                                                         


Q ss_pred             ---hheeccccCCCchHHHHHHHHHHh
Q psy125          315 ---YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       315 ---~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                         ++++||+.|.|++++|.+|.+.+.
T Consensus       161 ~~~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         161 LVPIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             cceEEEEecccCcCHHHHHHHHHhhCC
Confidence               478999999999999999999863

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.46  E-value=9.2e-14  Score=114.02  Aligned_cols=52  Identities=19%  Similarity=0.268  Sum_probs=48.5

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ....+|+++++.+|+|++.-+|++.+     +|||++++||.....+.+.+++.+.+
T Consensus       134 P~qLSGGQqQRVAIARALaM~P~vmL-----FDEPTSALDPElv~EVL~vm~~LA~e  185 (240)
T COG1126         134 PAQLSGGQQQRVAIARALAMDPKVML-----FDEPTSALDPELVGEVLDVMKDLAEE  185 (240)
T ss_pred             ccccCcHHHHHHHHHHHHcCCCCEEe-----ecCCcccCCHHHHHHHHHHHHHHHHc
Confidence            34566999999999999999999999     99999999999999999999999887

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.45  E-value=5.8e-12  Score=117.13  Aligned_cols=178  Identities=19%  Similarity=0.205  Sum_probs=108.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC------------------------CeeEEEEEEeC
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN------------------------RGAIRFNVWDT   65 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~------------------------~~~~~~~i~Dt   65 (385)
                      ++|+|||.+|||||||+|+|.+...  .....++.|+++......                        ...+.+.++|+
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~--~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADV--EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCcc--cccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            6999999999999999999766543  223445555544442211                        22467899999


Q ss_pred             CCccc----cccchhhh---hccCcEEEEEEeCCC---------------hh-hhh----cHHHH---------------
Q psy125           66 AGQEK----FGGLRDGY---YIQGQCAIIMFDVTS---------------RI-TYK----NVPNW---------------  103 (385)
Q Consensus        66 ~g~~~----~~~~~~~~---~~~~d~illV~d~~~---------------~~-~~~----~~~~~---------------  103 (385)
                      ||...    ...+...+   ++++|++++|+|+..               +. .++    ++..|               
T Consensus        80 aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~  159 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK  159 (396)
T ss_pred             CCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99642    22233344   789999999999962               10 000    00000               


Q ss_pred             -------------------------HHHHHH-----------------------hcCCCCEEEEEeCCCCcchhhhHHHH
Q psy125          104 -------------------------HRDLVR-----------------------VCENIPIVLCGNKVDIKDRKVKAKSI  135 (385)
Q Consensus       104 -------------------------~~~l~~-----------------------~~~~~~~ilv~nK~Dl~~~~~~~~~~  135 (385)
                                               +..++.                       ....+|+++|+||.|.......  ..
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~--l~  237 (396)
T PRK09602        160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN--IE  237 (396)
T ss_pred             HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH--HH
Confidence                                     000000                       0124899999999997532211  12


Q ss_pred             HHHHhcCCeEEEEcCCCCCChHH-HHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHH
Q psy125          136 VFHRKKNLQYYDISAKSNYNFEK-PFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLK  201 (385)
Q Consensus       136 ~~~~~~~~~~~~~Sa~~~~gi~~-l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~  201 (385)
                      .+.......++.+||+.+.++.+ ++..+.+.+...|        +++++....|...+  +.+.++
T Consensus       238 ~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p--------~~~~~d~ltd~~~r--~~E~IR  294 (396)
T PRK09602        238 RLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDS--------DFEILGELSEKQKK--ALEYIR  294 (396)
T ss_pred             HHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCC--------ccCccccCCHHHHH--HHHHHH
Confidence            22223556799999999999998 7888888876653        34444444454443  666666

>COG1161 Predicted GTPases [General function prediction only]

Probab=99.45  E-value=1.3e-12  Score=118.61  Aligned_cols=170  Identities=20%  Similarity=0.187  Sum_probs=121.8

Q ss_pred             CCCc-cccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhc-C
Q psy125           65 TAGQ-EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-N  142 (385)
Q Consensus        65 t~g~-~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~-~  142 (385)
                      .+|+ .++.......+...|+++-|+|+.++.+..+.  .+..+.   .+.+.++|+||+|+.+.....++....... +
T Consensus        17 ~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~--~l~~~v---~~k~~i~vlNK~DL~~~~~~~~W~~~~~~~~~   91 (322)
T COG1161          17 FPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP--ELERIV---KEKPKLLVLNKADLAPKEVTKKWKKYFKKEEG   91 (322)
T ss_pred             CCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc--cHHHHH---ccCCcEEEEehhhcCCHHHHHHHHHHHHhcCC
Confidence            3554 34555667788899999999999999876542  222222   466669999999999887777666665555 5


Q ss_pred             CeEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCC
Q psy125          143 LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDM  222 (385)
Q Consensus       143 ~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  222 (385)
                      ...+.++++.+.++..+...+.....                             +.+.....            .....
T Consensus        92 ~~~~~v~~~~~~~~~~i~~~~~~~~~-----------------------------~~i~~~~~------------~~~~~  130 (322)
T COG1161          92 IKPIFVSAKSRQGGKKIRKALEKLSE-----------------------------EKIKRLKK------------KGLLK  130 (322)
T ss_pred             CccEEEEeecccCccchHHHHHHHHH-----------------------------HHHHHHhh------------cCCCc
Confidence            67788888888888776654444321                             01111111            12223


Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE  284 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~  284 (385)
                      ...+++++|-+||||||+||++. +.....+++.+|+|...+.+.++.+   +.++||||.-
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~L~-~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii  188 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINRLL-GKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGII  188 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHHHh-cccceeeCCCCceecceEEEEcCCC---eEEecCCCcC
Confidence            45789999999999999999966 4555788889999999999998876   6899999963

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.45  E-value=7.6e-13  Score=121.04  Aligned_cols=118  Identities=16%  Similarity=0.196  Sum_probs=98.4

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc--------c
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG--------Y  293 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--------~  293 (385)
                      +..+|++++|.||||||||+|.++ ++-...++..+|||++.....++-.++.+.|+||||.++-......        .
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNaL~-~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNALL-GRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHHHh-cCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            356899999999999999999966 5667888899999999999988888899999999999865544433        5


Q ss_pred             cccCcEEEEEEeCCChhhhhh--------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          294 YIQGQCAIIMFDVTSRITYKN--------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       294 ~~~~~~~ilv~d~~~~~s~~~--------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      +..||.+++|+|.+.+.+-++                                      ++.+||++|.|++.+-+.|.+
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~~~~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~  373 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLALIELLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQ  373 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHHHHhcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHH
Confidence            789999999999998522222                                      588999999999999988888


Q ss_pred             HHhcC
Q psy125          336 KLIGD  340 (385)
Q Consensus       336 ~i~~~  340 (385)
                      .+...
T Consensus       374 ~~~~~  378 (454)
T COG0486         374 LFGKG  378 (454)
T ss_pred             HHhhc
Confidence            77554

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.45  E-value=1e-13  Score=113.23  Aligned_cols=100  Identities=17%  Similarity=0.132  Sum_probs=72.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc----cccccCcEEE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD----GYYIQGQCAI  301 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----~~~~~~~~~i  301 (385)
                      +|+++|.+|||||+|++++. +.+.. ...+.++       .....    .+|||||+......+.    ..++++|++|
T Consensus         3 ~i~~iG~~~~GKstl~~~l~-~~~~~-~~~~~~v-------~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQ-GNYTL-ARKTQAV-------EFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHc-CCCcc-CccceEE-------EECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999954 44421 1222222       22222    2699999842221111    2368999999


Q ss_pred             EEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125          302 IMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       302 lv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                      +|||+++..++..                                         +++|||++|.||+++|..+++.+.
T Consensus        70 ~v~d~~~~~s~~~~~~~~~~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~  147 (158)
T PRK15467         70 YVHGANDPESRLPAGLLDIGVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTK  147 (158)
T ss_pred             EEEeCCCcccccCHHHHhccCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence            9999998876544                                         789999999999999999988663

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.45  E-value=1.3e-12  Score=123.00  Aligned_cols=147  Identities=18%  Similarity=0.203  Sum_probs=99.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-------------------------------cccccceeeeEEEEEEeCCeeE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEK-------------------------------KYVATLGVEVHPLVFHTNRGAI   58 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~-------------------------------~~~~~~g~t~~~~~~~~~~~~~   58 (385)
                      +||+++|+.++|||||+++|+...-.-                               ......|.|.+.......+.+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            589999999999999999986432100                               0112345667777777777788


Q ss_pred             EEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh------hH
Q psy125           59 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV------KA  132 (385)
Q Consensus        59 ~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~------~~  132 (385)
                      .+.++||||++++.......+..+|++++|+|+......+....+.  +.......++++++||+|+.....      ..
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~  158 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLGIRHVVLAVNKMDLVDYDEEVFENIKK  158 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence            9999999999887665566778999999999998764433222222  222223446889999999864221      11


Q ss_pred             HHHHHHHhcC---CeEEEEcCCCCCChHH
Q psy125          133 KSIVFHRKKN---LQYYDISAKSNYNFEK  158 (385)
Q Consensus       133 ~~~~~~~~~~---~~~~~~Sa~~~~gi~~  158 (385)
                      +...+....+   .+++++||.++.|+.+
T Consensus       159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            2222222222   3699999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.45  E-value=1.1e-12  Score=125.24  Aligned_cols=151  Identities=16%  Similarity=0.163  Sum_probs=100.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc-------------------------------ccccceeeeEEEEEEeCC
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-------------------------------YVATLGVEVHPLVFHTNR   55 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~-------------------------------~~~~~g~t~~~~~~~~~~   55 (385)
                      .+.++|+++|+.++|||||+++|+...-.-.                               .....|+|.+.......+
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            5679999999999999999999875421100                               011234566666666667


Q ss_pred             eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hH-
Q psy125           56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KA-  132 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~-  132 (385)
                      +...+.++||||++.+.......+..+|++++|+|+......+....+  .+.......++++++||+|+.....  .. 
T Consensus       105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~  182 (474)
T PRK05124        105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLGIKHLVVAVNKMDLVDYSEEVFER  182 (474)
T ss_pred             CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhCCCceEEEEEeeccccchhHHHHH
Confidence            778899999999887765555556899999999999875433222222  1222223457889999999863211  11 


Q ss_pred             ---HHHHHHHh----cCCeEEEEcCCCCCChHHH
Q psy125          133 ---KSIVFHRK----KNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus       133 ---~~~~~~~~----~~~~~~~~Sa~~~~gi~~l  159 (385)
                         +...+...    ...+++++|++++.|+.++
T Consensus       183 i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        183 IREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence               12222222    2367999999999998754

>KOG4423|consensus

Probab=99.45  E-value=1.1e-14  Score=115.28  Aligned_cols=163  Identities=33%  Similarity=0.550  Sum_probs=135.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      -+++.++|.-|+|||+++.+++...+...+..++|+.+.......+.. -+++.+||..|++++..+..-|++.+++.++
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i  104 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI  104 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence            479999999999999999999999888889999998887777666554 4678999999999999999999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcchhh---hHHHHHHHHhcCC-eEEEEcCCCCCChHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNL-QYYDISAKSNYNFEK  158 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~  158 (385)
                      |||+++...|+....|.+.+....     .-.|+++..||||......   .....++.+..+. .++++|++.+.++.+
T Consensus       105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E  184 (229)
T KOG4423|consen  105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE  184 (229)
T ss_pred             EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence            999999999999999999876521     2356788899999865433   2344455565555 799999999999999


Q ss_pred             HHHHHHHHHhcCC
Q psy125          159 PFLWLARKLIGDP  171 (385)
Q Consensus       159 l~~~i~~~l~~~~  171 (385)
                      ....++..+.-+.
T Consensus       185 a~r~lVe~~lvnd  197 (229)
T KOG4423|consen  185 AQRELVEKILVND  197 (229)
T ss_pred             HHHHHHHHHHhhc
Confidence            8888888776553

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.44  E-value=2e-13  Score=113.60  Aligned_cols=60  Identities=18%  Similarity=0.235  Sum_probs=53.2

Q ss_pred             CeEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhc
Q psy125          143 LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETA  207 (385)
Q Consensus       143 ~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~  207 (385)
                      ......-|.+.+|+++++..|++++.++|++++     .|||.+.+||...+.+++.+++...+.
T Consensus       138 ~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiIL-----ADEPvasLDp~~a~~Vm~~l~~in~~~  197 (258)
T COG3638         138 LDKAYQRASTLSGGQQQRVAIARALVQQPKIIL-----ADEPVASLDPESAKKVMDILKDINQED  197 (258)
T ss_pred             HHHHHHHhccCCcchhHHHHHHHHHhcCCCEEe-----cCCcccccChhhHHHHHHHHHHHHHHc
Confidence            344445567788999999999999999999999     999999999999999999999987763

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.44  E-value=1.4e-12  Score=116.40  Aligned_cols=146  Identities=17%  Similarity=0.195  Sum_probs=92.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCC----ccc------------ccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEK----KYV------------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL   74 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~----~~~------------~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~   74 (385)
                      +|+|+|++|+|||||+++++......    .+.            ...+.+.........+.+..+.+|||||...+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            48999999999999999987532110    000            01123333334445556788999999999877666


Q ss_pred             hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEE--EcCCC
Q psy125           75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYD--ISAKS  152 (385)
Q Consensus        75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~Sa~~  152 (385)
                      ....+..+|++++|+|+++.........| ..+..  .++|.++++||+|+...........+....+.+++.  +...+
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~--~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~  157 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE--AGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE  157 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH--cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence            77888999999999999886544322222 22222  478999999999987543322233333333444443  44566


Q ss_pred             CCChHHH
Q psy125          153 NYNFEKP  159 (385)
Q Consensus       153 ~~gi~~l  159 (385)
                      +.++..+
T Consensus       158 ~~~~~~~  164 (268)
T cd04170         158 GDDFKGV  164 (268)
T ss_pred             CCceeEE
Confidence            6555433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.43  E-value=4e-13  Score=108.72  Aligned_cols=106  Identities=39%  Similarity=0.714  Sum_probs=90.0

Q ss_pred             EECCCCCCHHHHHHHHhcCcc-ccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCC
Q psy125          229 LVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT  307 (385)
Q Consensus       229 ~~G~~~vgks~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~  307 (385)
                      ++|.+|+|||++++++..... .....++. .+..............+.+||++|+..+......+++.++++++|||++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            579999999999999887666 45555665 6666666666667888999999999988888888999999999999999


Q ss_pred             Chhhhhh--------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          308 SRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       308 ~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ++.+++.                                                  ++++||+.+.|++++|.+|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  157 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE  157 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence            9987664                                                  799999999999999999863

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>KOG0077|consensus

Probab=99.43  E-value=3.9e-13  Score=104.69  Aligned_cols=151  Identities=20%  Similarity=0.292  Sum_probs=110.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.-|++++|--|+|||||+++ +.+.....+.||.-.|.....    .++++++-.|.+|+...+..+..|+..+|++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHM-LKdDrl~qhvPTlHPTSE~l~----Ig~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHM-LKDDRLGQHVPTLHPTSEELS----IGGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHH-HccccccccCCCcCCChHHhe----ecCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            446899999999999999999 666666666666655544433    378999999999998888889999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHH---HHHHhcC--------------CeEEEE
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSI---VFHRKKN--------------LQYYDI  148 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~---~~~~~~~--------------~~~~~~  148 (385)
                      .+|+-+.+.+.+....++.+...  ..+.|+++.+||+|.......++..   .+....+              ..++.+
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc  173 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC  173 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence            99999999998776666665552  3689999999999987644333222   1111111              146777


Q ss_pred             cCCCCCChHHHHHHH
Q psy125          149 SAKSNYNFEKPFLWL  163 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i  163 (385)
                      |...+.|..+-+.++
T Consensus       174 si~~~~gy~e~fkwl  188 (193)
T KOG0077|consen  174 SIVRKMGYGEGFKWL  188 (193)
T ss_pred             EEEccCccceeeeeh
Confidence            877766654444443

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.43  E-value=2.7e-13  Score=113.51  Aligned_cols=90  Identities=16%  Similarity=0.213  Sum_probs=67.8

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc----------ccCcccc
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE----------KFGGLRD  291 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~  291 (385)
                      ....+++++|.+|+||||+++++....+...+.+++|+|.....+..++   .+.+|||||..          .+..+..
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~   92 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE   92 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence            3568999999999999999999987766677778888877666555543   47899999953          2333334


Q ss_pred             cccc---cCcEEEEEEeCCChhhhhh
Q psy125          292 GYYI---QGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       292 ~~~~---~~~~~ilv~d~~~~~s~~~  314 (385)
                      .|++   .++++++|+|++++.+..+
T Consensus        93 ~~l~~~~~~~~ii~vvd~~~~~~~~~  118 (179)
T TIGR03598        93 EYLEKRENLKGVVLLMDIRHPLKELD  118 (179)
T ss_pred             HHHHhChhhcEEEEEecCCCCCCHHH
Confidence            4555   4579999999998666555

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>KOG1191|consensus

Probab=99.43  E-value=6.6e-13  Score=121.12  Aligned_cols=119  Identities=12%  Similarity=0.092  Sum_probs=94.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc-cCccccc--------c
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDG--------Y  293 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~--------~  293 (385)
                      ..++++++|+||||||+|+|.+. ++-...++|.+|+|++.....++-.++++.+.||||..+ -......        .
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNaL~-~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNALS-REDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHh-cCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            34899999999999999999955 566788999999999999998888889999999999876 2222111        4


Q ss_pred             cccCcEEEEEEeCCC--hhhhhh---------------------------------------------------------
Q psy125          294 YIQGQCAIIMFDVTS--RITYKN---------------------------------------------------------  314 (385)
Q Consensus       294 ~~~~~~~ilv~d~~~--~~s~~~---------------------------------------------------------  314 (385)
                      +..+|++++|+|...  -.+-..                                                         
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~  425 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP  425 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence            679999999999932  222111                                                         


Q ss_pred             -hheeccccCCCchHHHHHHHHHHhcCCC
Q psy125          315 -YYDISAKSNYNFEKPFLWLARKLIGDPN  342 (385)
Q Consensus       315 -~~e~Sak~~~~v~~~f~~l~~~i~~~~~  342 (385)
                       ..++|++++++++++-.++...+.....
T Consensus       426 i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  426 IVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             eEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence             4559999999999999999888766544

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.43  E-value=2.4e-13  Score=114.90  Aligned_cols=53  Identities=19%  Similarity=0.164  Sum_probs=48.3

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhc
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETA  207 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~  207 (385)
                      ....+|+++++..|++++...|++++     +|||+.++|...+..+.+.+.+...+.
T Consensus       128 P~qLSGGMrQRVaiARAL~~~P~lLL-----lDEPFgALDalTR~~lq~~l~~lw~~~  180 (248)
T COG1116         128 PHQLSGGMRQRVAIARALATRPKLLL-----LDEPFGALDALTREELQDELLRLWEET  180 (248)
T ss_pred             ccccChHHHHHHHHHHHHhcCCCEEE-----EcCCcchhhHHHHHHHHHHHHHHHHhh
Confidence            44556999999999999999999999     999999999999999999999887763

>PRK00049 elongation factor Tu; Reviewed

Probab=99.43  E-value=4.8e-12  Score=118.67  Aligned_cols=146  Identities=14%  Similarity=0.057  Sum_probs=98.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFE--------------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~--------------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~   71 (385)
                      ..+.++|+++|+.++|||||+++|+.....              .......|.|.+........+...+.++||||+.++
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            357799999999999999999998763110              011225677888777777677788999999999876


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEE-EEEeCCCCcchhh-----hHHHHHHHHhc----
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV-LCGNKVDIKDRKV-----KAKSIVFHRKK----  141 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~i-lv~nK~Dl~~~~~-----~~~~~~~~~~~----  141 (385)
                      .......+..+|++++|+|+......+. ...+..+..  .+.|.+ +++||+|+.....     ..++..+....    
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  165 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG  165 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence            6655666789999999999987533222 122222222  467875 6899999864322     11222333322    


Q ss_pred             -CCeEEEEcCCCCC
Q psy125          142 -NLQYYDISAKSNY  154 (385)
Q Consensus       142 -~~~~~~~Sa~~~~  154 (385)
                       ..+++++|+.++.
T Consensus       166 ~~~~iv~iSa~~g~  179 (396)
T PRK00049        166 DDTPIIRGSALKAL  179 (396)
T ss_pred             cCCcEEEeeccccc
Confidence             3578999998864

>COG2262 HflX GTPases [General function prediction only]

Probab=99.43  E-value=4.3e-12  Score=114.06  Aligned_cols=157  Identities=18%  Similarity=0.133  Sum_probs=102.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCcccccc--chh------hhh
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGG--LRD------GYY   79 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~--~~~------~~~   79 (385)
                      -+.|+|+|-+|+|||||+|++.+...  ........|.++........ +..+.+-||.|.-..-.  +..      .-.
T Consensus       192 ~p~vaLvGYTNAGKSTL~N~LT~~~~--~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~  269 (411)
T COG2262         192 IPLVALVGYTNAGKSTLFNALTGADV--YVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV  269 (411)
T ss_pred             CCeEEEEeeccccHHHHHHHHhccCe--eccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence            46899999999999999999664321  11222333333333332222 56778889999643211  111      223


Q ss_pred             ccCcEEEEEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125           80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (385)
                      ..+|.++.|+|++++...+.+.....-+... ....|+++|.||+|+.......  . .........+.+||+++.|++.
T Consensus       270 ~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~--~-~~~~~~~~~v~iSA~~~~gl~~  346 (411)
T COG2262         270 KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEIL--A-ELERGSPNPVFISAKTGEGLDL  346 (411)
T ss_pred             hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhh--h-hhhhcCCCeEEEEeccCcCHHH
Confidence            6899999999999996655554444444432 3568999999999976544311  1 1111222689999999999999


Q ss_pred             HHHHHHHHHhcC
Q psy125          159 PFLWLARKLIGD  170 (385)
Q Consensus       159 l~~~i~~~l~~~  170 (385)
                      ++..|...+...
T Consensus       347 L~~~i~~~l~~~  358 (411)
T COG2262         347 LRERIIELLSGL  358 (411)
T ss_pred             HHHHHHHHhhhc
Confidence            999999988643

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.42  E-value=9.5e-13  Score=128.13  Aligned_cols=112  Identities=13%  Similarity=0.163  Sum_probs=87.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      +..+++++|..++|||||++++....+.....+.+..+.....+..++. ..+.+|||||++.|..++..++..+|++|+
T Consensus        86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL  164 (587)
T TIGR00487        86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL  164 (587)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence            3468999999999999999999877765554433323333334444332 268999999999999999989999999999


Q ss_pred             EEeCCC---hhhhhh-----------------------------------------------hheeccccCCCchHHHHH
Q psy125          303 MFDVTS---RITYKN-----------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       303 v~d~~~---~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |||+++   +++++.                                               |+++||++|.||+++|.+
T Consensus       165 VVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~  244 (587)
T TIGR00487       165 VVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDM  244 (587)
T ss_pred             EEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHh
Confidence            999987   344433                                               578999999999999999


Q ss_pred             HHH
Q psy125          333 LAR  335 (385)
Q Consensus       333 l~~  335 (385)
                      |+.
T Consensus       245 I~~  247 (587)
T TIGR00487       245 ILL  247 (587)
T ss_pred             hhh
Confidence            875

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.42  E-value=4.5e-13  Score=121.94  Aligned_cols=115  Identities=17%  Similarity=0.110  Sum_probs=83.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC-eeEEEEEeeCCCcccc----Cccccc---cccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKF----GGLRDG---YYIQ  296 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~----~~~~~~---~~~~  296 (385)
                      ..|.++|.+|||||||++++....  ......+++|.......+.. ....+.+|||||+.+-    ..+...   ++..
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            469999999999999999976533  12333344555444433322 3456899999997432    223333   4568


Q ss_pred             CcEEEEEEeCCChhhhhh--------------------------------------------------hheeccccCCCc
Q psy125          297 GQCAIIMFDVTSRITYKN--------------------------------------------------YYDISAKSNYNF  326 (385)
Q Consensus       297 ~~~~ilv~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v  326 (385)
                      ++++|+|||+++..+|++                                                  +++|||+++.||
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            999999999998776655                                                  688999999999


Q ss_pred             hHHHHHHHHHHhcCC
Q psy125          327 EKPFLWLARKLIGDP  341 (385)
Q Consensus       327 ~~~f~~l~~~i~~~~  341 (385)
                      +++|.+|.+.+.+.+
T Consensus       317 ~eL~~~L~~~l~~~~  331 (335)
T PRK12299        317 DELLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999876543

>PLN03126 Elongation factor Tu; Provisional

Probab=99.42  E-value=3.6e-12  Score=121.29  Aligned_cols=147  Identities=14%  Similarity=0.042  Sum_probs=101.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCC------CC--------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGE------FE--------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~------~~--------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~   71 (385)
                      ..+.++|+++|+.++|||||+++|+...      ..        .......|.|.+.........+..+.++|+||+.++
T Consensus        78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f  157 (478)
T PLN03126         78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADY  157 (478)
T ss_pred             cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHH
Confidence            4567999999999999999999988521      11        112344677777766666667788999999999887


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhh-----hHHHHHHHHhc----
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV-----KAKSIVFHRKK----  141 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~-----~~~~~~~~~~~----  141 (385)
                      .......+..+|++++|+|+.+....+.. .++..+. . .++| +++++||+|+.+...     ..++..+....    
T Consensus       158 ~~~~~~g~~~aD~ailVVda~~G~~~qt~-e~~~~~~-~-~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~  234 (478)
T PLN03126        158 VKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAK-Q-VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPG  234 (478)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHH-H-cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            76666677899999999999876433322 2222222 2 4667 778999999865322     11333333332    


Q ss_pred             -CCeEEEEcCCCCCC
Q psy125          142 -NLQYYDISAKSNYN  155 (385)
Q Consensus       142 -~~~~~~~Sa~~~~g  155 (385)
                       ..+++++|+.++.+
T Consensus       235 ~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        235 DDIPIISGSALLALE  249 (478)
T ss_pred             CcceEEEEEcccccc
Confidence             45788999987754

>cd01889 SelB_euk SelB subfamily

Probab=99.42  E-value=3.6e-13  Score=114.04  Aligned_cols=114  Identities=17%  Similarity=0.129  Sum_probs=77.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC----cccccc-----ccceeeEEEEEEEE----------eCCeeEEEEEeeCCCccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTG----EFEKKY-----VATLGVEVHPLVFH----------TNRGAIRFNVWDTAGQEK  285 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~----------~~~~~~~l~i~Dt~G~~~  285 (385)
                      ++|+++|..++|||+++++++..    .+...+     ..|.+.++....+.          ..+..+.+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            47999999999999999998852    111111     12333333333332          123367899999999865


Q ss_pred             cCcccccccccCcEEEEEEeCCChhhhhh---------------------------------------------------
Q psy125          286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------------  314 (385)
Q Consensus       286 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------------  314 (385)
                      +....-.....+|++++|+|+++..+.+.                                                   
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~  160 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKN  160 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCC
Confidence            42222223456789999999987433221                                                   


Q ss_pred             --hheeccccCCCchHHHHHHHHHHh
Q psy125          315 --YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       315 --~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                        ++++||++|.|+++++.+|..+|.
T Consensus       161 ~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         161 SPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             CCEEEEeccCCCCHHHHHHHHHhccc
Confidence              467999999999999999999885

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.42  E-value=1.8e-12  Score=128.91  Aligned_cols=150  Identities=21%  Similarity=0.178  Sum_probs=99.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc-------------------------------ccccceeeeEEEEEEeCC
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-------------------------------YVATLGVEVHPLVFHTNR   55 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~-------------------------------~~~~~g~t~~~~~~~~~~   55 (385)
                      ...++|+++|++++|||||+++|+...-.-.                               .....|+|++........
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~  101 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT  101 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence            4578999999999999999999886321100                               011245566666666677


Q ss_pred             eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc--hhhh--
Q psy125           56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD--RKVK--  131 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~--~~~~--  131 (385)
                      ....+.++||||+.++.......+..+|++++|+|+......+....+.  +.......++++++||+|+.+  ....  
T Consensus       102 ~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~--~~~~~~~~~iivvvNK~D~~~~~~~~~~~  179 (632)
T PRK05506        102 PKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF--IASLLGIRHVVLAVNKMDLVDYDQEVFDE  179 (632)
T ss_pred             CCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH--HHHHhCCCeEEEEEEecccccchhHHHHH
Confidence            7788999999999876555555678999999999998754333222221  222223467889999999863  2111  


Q ss_pred             --HHHHHHHHhcC---CeEEEEcCCCCCChHH
Q psy125          132 --AKSIVFHRKKN---LQYYDISAKSNYNFEK  158 (385)
Q Consensus       132 --~~~~~~~~~~~---~~~~~~Sa~~~~gi~~  158 (385)
                        .+...+....+   .+++++||+++.|+.+
T Consensus       180 i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        180 IVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence              12222223323   3689999999999874

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.41  E-value=1.5e-13  Score=118.28  Aligned_cols=154  Identities=16%  Similarity=0.161  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc-cccchhhhhccCcEE---E
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQCA---I   86 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~-~~~~~~~~~~~~d~i---l   86 (385)
                      -++|+||||||||||++++.+                  ...+..|.+.+...|...... .......+++|....   +
T Consensus        30 i~~iiGpNG~GKSTLLk~l~g------------------~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~   91 (258)
T COG1120          30 ITGILGPNGSGKSTLLKCLAG------------------LLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL   91 (258)
T ss_pred             EEEEECCCCCCHHHHHHHHhc------------------cCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc
Confidence            468999999999999999877                  566666777776655443321 112233444443211   2


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      .|+|+..              ....++...+....+.|.   ....  ..+.......+........+|++.++.+|+++
T Consensus        92 tV~d~V~--------------~GR~p~~~~~~~~~~~D~---~~v~--~aL~~~~~~~la~r~~~~LSGGerQrv~iArA  152 (258)
T COG1120          92 TVYELVL--------------LGRYPHLGLFGRPSKEDE---EIVE--EALELLGLEHLADRPVDELSGGERQRVLIARA  152 (258)
T ss_pred             EEeehHh--------------hcCCcccccccCCCHhHH---HHHH--HHHHHhCcHHHhcCcccccChhHHHHHHHHHH
Confidence            2333211              111122222211122221   1111  11222222233333445566999999999999


Q ss_pred             HhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          167 LIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       167 l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      +.+++++++     +|||++.+|...+..+.+.+++...+
T Consensus       153 LaQ~~~iLL-----LDEPTs~LDi~~Q~evl~ll~~l~~~  187 (258)
T COG1120         153 LAQETPILL-----LDEPTSHLDIAHQIEVLELLRDLNRE  187 (258)
T ss_pred             HhcCCCEEE-----eCCCccccCHHHHHHHHHHHHHHHHh
Confidence            999999999     99999999999999999999998755

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.41  E-value=1.2e-12  Score=112.37  Aligned_cols=113  Identities=18%  Similarity=0.197  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--Cc------------ccccceeeeEEEE--EEeC--------CeeEEEEEEeCC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFE--KK------------YVATLGVEVHPLV--FHTN--------RGAIRFNVWDTA   66 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~--~~------------~~~~~g~t~~~~~--~~~~--------~~~~~~~i~Dt~   66 (385)
                      .|+++|+.++|||||+.+|+...-.  ..            .....|.|.....  ....        ...+.+++||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6899999999999999998754211  00            0011222322221  1112        337889999999


Q ss_pred             CccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125           67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK  126 (385)
Q Consensus        67 g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~  126 (385)
                      |+.++......++..+|++++|+|+.+....+.. ..+.....  .++|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~-~~l~~~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE-TVLRQALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH-HHHHHHHH--cCCCEEEEEECCCcc
Confidence            9999888888899999999999999987655432 22222222  468999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.41  E-value=4.2e-12  Score=120.31  Aligned_cols=152  Identities=17%  Similarity=0.214  Sum_probs=105.0

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCC--C---------------------------CcccccceeeeEEEEEEeCC
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYVATLGVEVHPLVFHTNR   55 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~--~---------------------------~~~~~~~g~t~~~~~~~~~~   55 (385)
                      ...+.++|+++|+.++|||||+-+|+...-  .                           .......|+|.+.......+
T Consensus         3 ~~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~   82 (447)
T PLN00043          3 KEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET   82 (447)
T ss_pred             CCCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence            356789999999999999999988764210  0                           01123456677777777778


Q ss_pred             eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhh------cHHHHHHHHHHhcCCC-CEEEEEeCCCCcch
Q psy125           56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK------NVPNWHRDLVRVCENI-PIVLCGNKVDIKDR  128 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~------~~~~~~~~l~~~~~~~-~~ilv~nK~Dl~~~  128 (385)
                      ....++++||||+.+|.......+..+|++|+|+|+++.. ++      ........+... .++ ++++++||+|+...
T Consensus        83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~-~e~g~~~~~qT~eh~~~~~~-~gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGG-FEAGISKDGQTREHALLAFT-LGVKQMICCCNKMDATTP  160 (447)
T ss_pred             CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCc-eecccCCCchHHHHHHHHHH-cCCCcEEEEEEcccCCch
Confidence            8899999999999999888888889999999999998731 21      111111112222 355 57889999997521


Q ss_pred             --------hhhHHHHHHHHhcC-----CeEEEEcCCCCCChHH
Q psy125          129 --------KVKAKSIVFHRKKN-----LQYYDISAKSNYNFEK  158 (385)
Q Consensus       129 --------~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  158 (385)
                              +...++..+....+     .+++++|+.+|.|+.+
T Consensus       161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence                    11334444555444     5789999999999753

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.41  E-value=7.4e-12  Score=107.27  Aligned_cols=158  Identities=18%  Similarity=0.260  Sum_probs=101.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEe-CCeeEEEEEEeCCCccccc-----cchhhhhccCcE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFG-----GLRDGYYIQGQC   84 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~-~~~~~~~~i~Dt~g~~~~~-----~~~~~~~~~~d~   84 (385)
                      ||+|+|+.|+||||..+. +-.++.+......|.|.+.....+ ..+.+.+.+||+||+..+.     ......++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~v-IF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSV-IFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHH-HHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHH-HHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999887 445555555566777776665555 3567899999999986433     245678899999


Q ss_pred             EEEEEeCCChhhhhc---HHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH--------HHHHHHHhcC---CeEEEEcC
Q psy125           85 AIIMFDVTSRITYKN---VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA--------KSIVFHRKKN---LQYYDISA  150 (385)
Q Consensus        85 illV~d~~~~~~~~~---~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~--------~~~~~~~~~~---~~~~~~Sa  150 (385)
                      +|+|+|+.+..-.+.   ....+..+.+..++..+.++++|.|+.......        .+.+.....+   ..++.+|.
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI  159 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI  159 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence            999999985432222   334455556667899999999999986533322        2222333334   67888888


Q ss_pred             CCCCChHHHHHHHHHHHhcC
Q psy125          151 KSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~  170 (385)
                      .+. .+-+.+..++..+..+
T Consensus       160 ~D~-Sly~A~S~Ivq~LiP~  178 (232)
T PF04670_consen  160 WDE-SLYEAWSKIVQKLIPN  178 (232)
T ss_dssp             TST-HHHHHHHHHHHTTSTT
T ss_pred             cCc-HHHHHHHHHHHHHccc
Confidence            874 6777788887776544

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd01850 CDC_Septin CDC/Septin

Probab=99.41  E-value=6.4e-12  Score=111.77  Aligned_cols=138  Identities=17%  Similarity=0.259  Sum_probs=83.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCc----------ccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc-----
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKK----------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-----   73 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~----------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-----   73 (385)
                      .++|+++|.+|+|||||+|+|++......          ..++.+..........++..+.+++|||||......     
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            58999999999999999999888765433          223333333333444455668899999999533211     


Q ss_pred             ---------------------chhhhhc--cCcEEEEEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125           74 ---------------------LRDGYYI--QGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK  129 (385)
Q Consensus        74 ---------------------~~~~~~~--~~d~illV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~  129 (385)
                                           .+...+.  ++|+++++++.+.. ..... ...+..+.   ...|+++|+||+|+....
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~~  159 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTPE  159 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCHH
Confidence                                 0101222  36677777776542 22222 12233332   478999999999985532


Q ss_pred             h----hHHHHHHHHhcCCeEEEEcC
Q psy125          130 V----KAKSIVFHRKKNLQYYDISA  150 (385)
Q Consensus       130 ~----~~~~~~~~~~~~~~~~~~Sa  150 (385)
                      .    .....+.....++.++.+..
T Consensus       160 e~~~~k~~i~~~l~~~~i~~~~~~~  184 (276)
T cd01850         160 ELKEFKQRIMEDIEEHNIKIYKFPE  184 (276)
T ss_pred             HHHHHHHHHHHHHHHcCCceECCCC
Confidence            2    23344455566666666543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.40  E-value=1.2e-11  Score=117.03  Aligned_cols=119  Identities=15%  Similarity=0.104  Sum_probs=84.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcC------CCC--------CcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTG------EFE--------KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~------~~~--------~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~   71 (385)
                      ..+.++|+++|+.++|||||+++|.+.      ...        .......|+|++........+..++.++||||+.++
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            356799999999999999999997521      100        011234778888887777777889999999999876


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcc
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKD  127 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~  127 (385)
                      .......+..+|++++|+|+.+....+. ...+..+..  .++| +++++||+|+.+
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~--~gip~iIvviNKiDlv~  191 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ--VGVPSLVVFLNKVDVVD  191 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEeeccCC
Confidence            6555555678999999999987543222 122222222  4677 578899999874

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.39  E-value=1.3e-12  Score=111.36  Aligned_cols=88  Identities=16%  Similarity=0.291  Sum_probs=68.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccC-cEEEEEE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQG-QCAIIMF  304 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~-~~~ilv~  304 (385)
                      +++++|+++||||+|++++..+.+...+.++. ...........+..+.+.||||||+.+++..+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999888877665542 222222222223456789999999999988888899999 9999999


Q ss_pred             eCCCh-hhhhh
Q psy125          305 DVTSR-ITYKN  314 (385)
Q Consensus       305 d~~~~-~s~~~  314 (385)
                      |+++. .++.+
T Consensus        81 D~~~~~~~~~~   91 (203)
T cd04105          81 DSATFQKNLKD   91 (203)
T ss_pred             ECccchhHHHH
Confidence            99998 55544

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>COG1159 Era GTPase [General function prediction only]

Probab=99.39  E-value=1.5e-12  Score=112.49  Aligned_cols=125  Identities=14%  Similarity=0.020  Sum_probs=99.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc--------cc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG--------YY  294 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--------~~  294 (385)
                      .+..++++|.||||||||+|+++ +.-...+++.+++|+.....-......++.++||||..+-......        .+
T Consensus         5 ksGfVaIiGrPNvGKSTLlN~l~-G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl   83 (298)
T COG1159           5 KSGFVAIIGRPNVGKSTLLNALV-GQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSAL   83 (298)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHh-cCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHh
Confidence            45789999999999999999976 4455777888889998887766666778999999998665433332        46


Q ss_pred             ccCcEEEEEEeCCChhhhhh---------------------------------------------hheeccccCCCchHH
Q psy125          295 IQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       295 ~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      .++|+++||.|+++.-.-.+                                             .+.+||+.|.|++.+
T Consensus        84 ~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L  163 (298)
T COG1159          84 KDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTL  163 (298)
T ss_pred             ccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHH
Confidence            79999999999998333222                                             789999999999999


Q ss_pred             HHHHHHHHhcCCCcccccC
Q psy125          330 FLWLARKLIGDPNLEFVAM  348 (385)
Q Consensus       330 f~~l~~~i~~~~~~~~~~~  348 (385)
                      ...+...+.+.+.+.....
T Consensus       164 ~~~i~~~Lpeg~~~yp~d~  182 (298)
T COG1159         164 LEIIKEYLPEGPWYYPEDQ  182 (298)
T ss_pred             HHHHHHhCCCCCCcCChhh
Confidence            9999999988776654443

>PRK00089 era GTPase Era; Reviewed

Probab=99.39  E-value=2.3e-12  Score=116.55  Aligned_cols=117  Identities=16%  Similarity=0.083  Sum_probs=84.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc--------cccccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYY  294 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~  294 (385)
                      ....|+++|.+|||||||+|++++..+ ...++.++++..............+.+|||||......        ....++
T Consensus         4 ~~g~V~iiG~pn~GKSTLin~L~g~~~-~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~   82 (292)
T PRK00089          4 KSGFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSL   82 (292)
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhCCce-eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHH
Confidence            456799999999999999999876544 33444555555544333333446789999999755332        222357


Q ss_pred             ccCcEEEEEEeCCChhhhhh---------------------------------------------hheeccccCCCchHH
Q psy125          295 IQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       295 ~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      .++|++++|+|+++..+-..                                             ++++||++|.|++++
T Consensus        83 ~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L  162 (292)
T PRK00089         83 KDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDEL  162 (292)
T ss_pred             hcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHH
Confidence            79999999999998322111                                             678999999999999


Q ss_pred             HHHHHHHHhcC
Q psy125          330 FLWLARKLIGD  340 (385)
Q Consensus       330 f~~l~~~i~~~  340 (385)
                      +.+|.+.+...
T Consensus       163 ~~~L~~~l~~~  173 (292)
T PRK00089        163 LDVIAKYLPEG  173 (292)
T ss_pred             HHHHHHhCCCC
Confidence            99999987544

>cd01895 EngA2 EngA2 subfamily

Probab=99.39  E-value=1.6e-12  Score=108.07  Aligned_cols=111  Identities=19%  Similarity=0.228  Sum_probs=77.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc-----------cc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR-----------DG  292 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~-----------~~  292 (385)
                      .++|+++|.+|+|||+++++++...+... ....+++.......+...+..+.+|||||........           ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~   80 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVIV-SDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK   80 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccceec-cCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence            37899999999999999999886543211 1222333333222222223457899999976442111           12


Q ss_pred             ccccCcEEEEEEeCCChhhhhh-------------------------------------------------hheeccccC
Q psy125          293 YYIQGQCAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       293 ~~~~~~~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~  323 (385)
                      +++++|++++|+|++++.++..                                                 ++++||+++
T Consensus        81 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (174)
T cd01895          81 AIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTG  160 (174)
T ss_pred             HHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCC
Confidence            4679999999999999877654                                                 788999999


Q ss_pred             CCchHHHHHHHH
Q psy125          324 YNFEKPFLWLAR  335 (385)
Q Consensus       324 ~~v~~~f~~l~~  335 (385)
                      .|++++|.++.+
T Consensus       161 ~~i~~~~~~l~~  172 (174)
T cd01895         161 QGVDKLFDAIDE  172 (174)
T ss_pred             CCHHHHHHHHHH
Confidence            999999988876

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.39  E-value=1.4e-12  Score=104.40  Aligned_cols=107  Identities=17%  Similarity=0.145  Sum_probs=77.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc------cc--ccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD------GY--YIQ  296 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~------~~--~~~  296 (385)
                      ++|+++|.||||||++.|++.+..  ......+|+|...+...+......+.++|+||.........      .|  ...
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            479999999999999999977555  44566777877766655543446789999999765544332      13  369


Q ss_pred             CcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHH
Q psy125          297 GQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       297 ~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      .|++|.|.|.++.+.-..                                         ++.+||+++.|++++++.|
T Consensus        79 ~D~ii~VvDa~~l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I  156 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI  156 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence            999999999998544322                                         8999999999999998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK13351 elongation factor G; Reviewed

Probab=99.37  E-value=7.8e-12  Score=125.78  Aligned_cols=117  Identities=21%  Similarity=0.237  Sum_probs=85.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCC----Cc------c------cccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFE----KK------Y------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~----~~------~------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~   71 (385)
                      ...+|+|+|+.|+|||||+++|+...-.    ..      .      ....+.|.........+....+++|||||+.++
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df   86 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF   86 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence            4569999999999999999998753210    00      0      012444555555566667899999999999888


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~  127 (385)
                      ......+++.+|++++|+|+++....+....|. .+..  .++|+++++||+|+..
T Consensus        87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~--~~~p~iiviNK~D~~~  139 (687)
T PRK13351         87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR--YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh--cCCCEEEEEECCCCCC
Confidence            777888899999999999998876554433332 2222  4789999999999864

>PRK11058 GTPase HflX; Provisional

Probab=99.37  E-value=1.1e-12  Score=123.27  Aligned_cols=113  Identities=19%  Similarity=0.128  Sum_probs=80.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEE--EEEEeCCeeEEEEEeeCCCcccc--Ccccc------ccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP--LVFHTNRGAIRFNVWDTAGQEKF--GGLRD------GYY  294 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~Dt~G~~~~--~~~~~------~~~  294 (385)
                      .+++++|.+||||||++|++....+..  ...+++|...  ..+.+.+. ..+.+|||||..+.  ..++.      .++
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~v--~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~  274 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVYA--ADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQET  274 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceee--ccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHh
Confidence            589999999999999999988655431  1222233322  23334332 25689999998442  11222      246


Q ss_pred             ccCcEEEEEEeCCChhhhhh--------------------------------------------hheeccccCCCchHHH
Q psy125          295 IQGQCAIIMFDVTSRITYKN--------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       295 ~~~~~~ilv~d~~~~~s~~~--------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      +.+|++|+|+|++++.++++                                            ++++||++|.||+++|
T Consensus       275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~  354 (426)
T PRK11058        275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLF  354 (426)
T ss_pred             hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHH
Confidence            89999999999999876654                                            1679999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      .+|.+.+...
T Consensus       355 e~I~~~l~~~  364 (426)
T PRK11058        355 QALTERLSGE  364 (426)
T ss_pred             HHHHHHhhhc
Confidence            9999988543

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.37  E-value=2.4e-12  Score=105.40  Aligned_cols=119  Identities=18%  Similarity=0.259  Sum_probs=69.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhh---hhccCcEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG---YYIQGQCA   85 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~---~~~~~d~i   85 (385)
                      .-.|+|+|++|+|||+|+.+|..+.....+.+... ....  .........+.++|+||+.+.+.....   +...+.++
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~-n~~~--~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~I   79 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN-NIAY--NVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGI   79 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSE-EEEC--CGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC-CceE--EeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEE
Confidence            35799999999999999999888865554444311 1100  001234567899999999987764444   47889999


Q ss_pred             EEEEeCCCh-hhhhcHHHH-HHHHHH---hcCCCCEEEEEeCCCCcchhh
Q psy125           86 IIMFDVTSR-ITYKNVPNW-HRDLVR---VCENIPIVLCGNKVDIKDRKV  130 (385)
Q Consensus        86 llV~d~~~~-~~~~~~~~~-~~~l~~---~~~~~~~ilv~nK~Dl~~~~~  130 (385)
                      |||+|.... .....+.++ +.-+..   .....|++++.||.|+.....
T Consensus        80 IfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~  129 (181)
T PF09439_consen   80 IFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP  129 (181)
T ss_dssp             EEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred             EEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence            999998753 233333333 222222   225678999999999876443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.37  E-value=1.4e-11  Score=116.90  Aligned_cols=151  Identities=17%  Similarity=0.206  Sum_probs=102.4

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCC--CC---------------------------CcccccceeeeEEEEEEeCCe
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGE--FE---------------------------KKYVATLGVEVHPLVFHTNRG   56 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~--~~---------------------------~~~~~~~g~t~~~~~~~~~~~   56 (385)
                      ..+.++|+++|+.++|||||+.+|+...  ..                           .......|.|.+.......++
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            4577999999999999999999987521  00                           011134567777777777888


Q ss_pred             eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhh---h---hcHHHHHHHHHHhcCCCC-EEEEEeCCCCcc--
Q psy125           57 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRIT---Y---KNVPNWHRDLVRVCENIP-IVLCGNKVDIKD--  127 (385)
Q Consensus        57 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~---~---~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~--  127 (385)
                      ...++++||||+.+|.......+..+|++++|+|+.....   +   ....+.+ .+... .++| +++++||+|...  
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~-~~~~~-~gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHA-LLAFT-LGVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHH-HHHHH-cCCCeEEEEEEccccccch
Confidence            8999999999999887777777889999999999987531   1   1111211 12222 3555 678999999432  


Q ss_pred             ---h---hhhHHHHHHHHhc-----CCeEEEEcCCCCCChHH
Q psy125          128 ---R---KVKAKSIVFHRKK-----NLQYYDISAKSNYNFEK  158 (385)
Q Consensus       128 ---~---~~~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~  158 (385)
                         .   ....++..+....     ..+++++|+.+|.|+.+
T Consensus       162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence               1   1122333333322     25789999999999854

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.37  E-value=1.8e-12  Score=109.40  Aligned_cols=51  Identities=18%  Similarity=0.219  Sum_probs=47.4

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+|+++++.+|+|++..+|++++     +|||+..+|......+.+.+++...+
T Consensus       141 ~eLSGGqqQRVAIARAL~~~P~iil-----ADEPTgnLD~~t~~~V~~ll~~~~~~  191 (226)
T COG1136         141 SELSGGQQQRVAIARALINNPKIIL-----ADEPTGNLDSKTAKEVLELLRELNKE  191 (226)
T ss_pred             hhcCHHHHHHHHHHHHHhcCCCeEE-----eeCccccCChHHHHHHHHHHHHHHHh
Confidence            3455999999999999999999999     99999999999999999999998766

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.37  E-value=3.7e-12  Score=109.27  Aligned_cols=161  Identities=12%  Similarity=0.062  Sum_probs=97.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc-----------hhhh
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL-----------RDGY   78 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~-----------~~~~   78 (385)
                      +||+|+|.+|+||||++|.|++...+.......++|..+........+..+.++||||..+....           ....
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            58999999999999999999998877666555566666666655666788999999996432211           1123


Q ss_pred             hccCcEEEEEEeCCChhhh-hcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---------hHHHHHHHHhcCCeEEEE
Q psy125           79 YIQGQCAIIMFDVTSRITY-KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---------KAKSIVFHRKKNLQYYDI  148 (385)
Q Consensus        79 ~~~~d~illV~d~~~~~~~-~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---------~~~~~~~~~~~~~~~~~~  148 (385)
                      .++.|++|+|+.+...... .....++..+.....-..++++++..|......         ...+.++...++.+++.+
T Consensus        81 ~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~~f  160 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYHVF  160 (212)
T ss_dssp             TT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEEEC
T ss_pred             cCCCeEEEEEEecCcchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEEEE
Confidence            4679999999999833211 112233444433212245777777776443221         123456777788888888


Q ss_pred             cCC------CCCChHHHHHHHHHHHhcC
Q psy125          149 SAK------SNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       149 Sa~------~~~gi~~l~~~i~~~l~~~  170 (385)
                      +.+      ....+.+++..|...+..+
T Consensus       161 ~n~~~~~~~~~~qv~~Ll~~ie~mv~~n  188 (212)
T PF04548_consen  161 NNKTKDKEKDESQVSELLEKIEEMVQEN  188 (212)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eccccchhhhHHHHHHHHHHHHHHHHHc
Confidence            766      2345666777777766655

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.36  E-value=1e-11  Score=124.67  Aligned_cols=118  Identities=18%  Similarity=0.110  Sum_probs=87.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCC----Ccc------------cccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFE----KKY------------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~----~~~------------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~   71 (385)
                      +..+|+|+|+.|+|||||+++|+...-.    ..+            ....|+|.+.......+++..+++|||||+.++
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            3458999999999999999998742111    001            114577777777777788899999999999887


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcch
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR  128 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~  128 (385)
                      .......+..+|++++|+|+.+....+... ++..+..  .++|+++++||+|+...
T Consensus        89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~-~~~~~~~--~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        89 TVEVERSLRVLDGAVAVLDAVGGVQPQSET-VWRQANR--YEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             hHHHHHHHHHhCEEEEEEeCCCCCChhHHH-HHHHHHH--cCCCEEEEEECCCCCCC
Confidence            777788889999999999998865444322 2222222  47899999999998753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.35  E-value=4.2e-12  Score=126.59  Aligned_cols=112  Identities=14%  Similarity=0.165  Sum_probs=86.5

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      .+...|+++|..++|||||++++..+.+.....+.+..+.....+..+  +..++||||||++.|..++..+++.+|++|
T Consensus       288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~--~~~ItfiDTPGhe~F~~m~~rga~~aDiaI  365 (787)
T PRK05306        288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN--GGKITFLDTPGHEAFTAMRARGAQVTDIVV  365 (787)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC--CEEEEEEECCCCccchhHHHhhhhhCCEEE
Confidence            356789999999999999999988766554332222122222233333  456899999999999999998999999999


Q ss_pred             EEEeCCC---hhhhhh-----------------------------------------------hheeccccCCCchHHHH
Q psy125          302 IMFDVTS---RITYKN-----------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       302 lv~d~~~---~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      ||||+++   +.+++.                                               |+++||++|.||+++|.
T Consensus       366 LVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle  445 (787)
T PRK05306        366 LVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLE  445 (787)
T ss_pred             EEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHH
Confidence            9999987   444333                                               68899999999999999


Q ss_pred             HHHH
Q psy125          332 WLAR  335 (385)
Q Consensus       332 ~l~~  335 (385)
                      +|..
T Consensus       446 ~I~~  449 (787)
T PRK05306        446 AILL  449 (787)
T ss_pred             hhhh
Confidence            9986

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.35  E-value=1.6e-12  Score=108.45  Aligned_cols=106  Identities=18%  Similarity=0.136  Sum_probs=72.2

Q ss_pred             EECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCe-eEEEEEeeCCCccc----cCcccc---cccccCcEE
Q psy125          229 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEK----FGGLRD---GYYIQGQCA  300 (385)
Q Consensus       229 ~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~----~~~~~~---~~~~~~~~~  300 (385)
                      ++|.+|||||||++++....+  ......+++.......+... ...+.+|||||+..    ...+..   .++++++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            579999999999999887654  11122222322221112222 55689999999732    222322   247789999


Q ss_pred             EEEEeCCCh------hhhh----------------------h---------------------------------hheec
Q psy125          301 IIMFDVTSR------ITYK----------------------N---------------------------------YYDIS  319 (385)
Q Consensus       301 ilv~d~~~~------~s~~----------------------~---------------------------------~~e~S  319 (385)
                      ++|+|++++      .+++                      .                                 ++++|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999987      3332                      1                                 78999


Q ss_pred             cccCCCchHHHHHHHHH
Q psy125          320 AKSNYNFEKPFLWLARK  336 (385)
Q Consensus       320 ak~~~~v~~~f~~l~~~  336 (385)
                      |+++.|++++|+++.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.35  E-value=2.1e-11  Score=106.00  Aligned_cols=153  Identities=17%  Similarity=0.088  Sum_probs=105.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc-------cchhhhhcc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-------GLRDGYYIQ   81 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~-------~~~~~~~~~   81 (385)
                      .-+++|||.|++|||||+|.|.+ . ...+...+.+|..++.......+..++++|+||.-...       .......++
T Consensus        63 da~v~lVGfPsvGKStLL~~LTn-t-~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLTN-T-KSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHhC-C-CccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            35899999999999999999554 2 23334556667777777777888999999999864322       234556789


Q ss_pred             CcEEEEEEeCCChhh-hhcHHHHHH-------------------------------------------------------
Q psy125           82 GQCAIIMFDVTSRIT-YKNVPNWHR-------------------------------------------------------  105 (385)
Q Consensus        82 ~d~illV~d~~~~~~-~~~~~~~~~-------------------------------------------------------  105 (385)
                      ||.+++|+|+..... .+.+...+.                                                       
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999986433 111111110                                                       


Q ss_pred             -----------HHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          106 -----------DLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       106 -----------~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                                 .+......+|.+.|.||+|+...+....   +.+.  ...+.+|++.+.|++++...|-+.+-
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~---l~~~--~~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELER---LARK--PNSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHHHHHH---HHhc--cceEEEecccCCCHHHHHHHHHHhhC
Confidence                       0001112468899999999877433322   2222  27899999999999999999988763

>cd04163 Era Era subfamily

Probab=99.35  E-value=5.7e-12  Score=103.86  Aligned_cols=112  Identities=14%  Similarity=0.066  Sum_probs=80.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc--------cccccc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYI  295 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~--------~~~~~~  295 (385)
                      ..+|+++|.+|+||||++++++...+.. .....+++............+.+.+|||||.......        ...++.
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~   81 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQKISI-VSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK   81 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCceEe-ccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence            4789999999999999999988654322 2222223333333333444567899999997654332        233578


Q ss_pred             cCcEEEEEEeCCChhhhhh---------------------------------------------hheeccccCCCchHHH
Q psy125          296 QGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       296 ~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      .+|++++|+|++++.+...                                             ++++||+++.|++++|
T Consensus        82 ~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~  161 (168)
T cd04163          82 DVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELL  161 (168)
T ss_pred             hCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHH
Confidence            9999999999998722222                                             7889999999999999


Q ss_pred             HHHHHH
Q psy125          331 LWLARK  336 (385)
Q Consensus       331 ~~l~~~  336 (385)
                      .+|.+.
T Consensus       162 ~~l~~~  167 (168)
T cd04163         162 EEIVKY  167 (168)
T ss_pred             HHHHhh
Confidence            998765

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.34  E-value=1.8e-11  Score=107.31  Aligned_cols=158  Identities=16%  Similarity=0.090  Sum_probs=102.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCcccccc----chh---hhhccC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGG----LRD---GYYIQG   82 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~----~~~---~~~~~~   82 (385)
                      -|+|||-||||||||++.+..  ..+.+..++.+|..+....+. ...-.|.+-|.||.....+    +-.   ..+.++
T Consensus       161 DVGLVG~PNaGKSTlls~vS~--AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt  238 (369)
T COG0536         161 DVGLVGLPNAGKSTLLSAVSA--AKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT  238 (369)
T ss_pred             ccccccCCCCcHHHHHHHHhh--cCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence            468999999999999998544  334445556666666554443 3456689999999754332    222   234678


Q ss_pred             cEEEEEEeCCChhh---hhc---HHHHHHHHHHhcCCCCEEEEEeCCCCcch-hhhHHH-HHHHHhcCCeEE-EEcCCCC
Q psy125           83 QCAIIMFDVTSRIT---YKN---VPNWHRDLVRVCENIPIVLCGNKVDIKDR-KVKAKS-IVFHRKKNLQYY-DISAKSN  153 (385)
Q Consensus        83 d~illV~d~~~~~~---~~~---~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~-~~~~~~-~~~~~~~~~~~~-~~Sa~~~  153 (385)
                      .++++|+|++....   .++   +...+..+.....++|.++|+||+|+... +..... ..+........+ .+|+.++
T Consensus       239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~  318 (369)
T COG0536         239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR  318 (369)
T ss_pred             heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence            89999999986543   222   22333333334568999999999995433 322222 233333343322 2999999


Q ss_pred             CChHHHHHHHHHHHhcC
Q psy125          154 YNFEKPFLWLARKLIGD  170 (385)
Q Consensus       154 ~gi~~l~~~i~~~l~~~  170 (385)
                      .|++++...+.+.+...
T Consensus       319 ~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         319 EGLDELLRALAELLEET  335 (369)
T ss_pred             cCHHHHHHHHHHHHHHh
Confidence            99999999988887654

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.33  E-value=1.3e-11  Score=119.11  Aligned_cols=119  Identities=19%  Similarity=0.238  Sum_probs=83.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc--CCCC--Cc----------------ccccceeeeEEEEEEeCCeeEEEEEEeCCC
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLT--GEFE--KK----------------YVATLGVEVHPLVFHTNRGAIRFNVWDTAG   67 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~--~~~~--~~----------------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g   67 (385)
                      +..+|+|+|+.|+|||||+++|+.  +...  ..                .....|.+.........++++.+++|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            345999999999999999999863  1100  00                011234455555566677789999999999


Q ss_pred             ccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125           68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK  129 (385)
Q Consensus        68 ~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~  129 (385)
                      +.++.......+..+|++|+|+|+.+..... ...++....  ..++|+++++||+|+....
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~--~~~iPiiv~iNK~D~~~a~  147 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCR--LRDTPIFTFINKLDRDGRE  147 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHH--hcCCCEEEEEECCcccccC
Confidence            9888776777889999999999998753222 122332222  2589999999999986543

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.33  E-value=3e-12  Score=126.51  Aligned_cols=114  Identities=18%  Similarity=0.204  Sum_probs=88.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCcccccccccee--eEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA  300 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~  300 (385)
                      +...|+++|..++|||||++++....+.....+++.  ...+...+..++....+.+|||||++.|..++..++..+|++
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia  322 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA  322 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence            457899999999999999999887665443222221  112222333334567899999999999999999999999999


Q ss_pred             EEEEeCCCh---hhhhh-----------------------------------------------hheeccccCCCchHHH
Q psy125          301 IIMFDVTSR---ITYKN-----------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       301 ilv~d~~~~---~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||+|+++.   .+++.                                               |+++||++|.||+++|
T Consensus       323 ILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLl  402 (742)
T CHL00189        323 ILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLL  402 (742)
T ss_pred             EEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHH
Confidence            999999884   44333                                               4789999999999999


Q ss_pred             HHHHHH
Q psy125          331 LWLARK  336 (385)
Q Consensus       331 ~~l~~~  336 (385)
                      .+|+..
T Consensus       403 e~I~~l  408 (742)
T CHL00189        403 ETILLL  408 (742)
T ss_pred             Hhhhhh
Confidence            999875

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.32  E-value=4.1e-12  Score=115.64  Aligned_cols=110  Identities=18%  Similarity=0.207  Sum_probs=76.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEE--EEeCCeeEEEEEeeCCCcccc----Cccccccc---c
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--FHTNRGAIRFNVWDTAGQEKF----GGLRDGYY---I  295 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~i~Dt~G~~~~----~~~~~~~~---~  295 (385)
                      ..|+++|.+|||||||++++.....  .....+++|.....  +.++ ....+.||||||+.+.    ..+...++   .
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~-~~~~~~i~D~PGli~~a~~~~gLg~~flrhie  234 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVD-DGRSFVIADIPGLIEGASEGAGLGHRFLKHIE  234 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeC-CceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence            5799999999999999999875432  11222223332222  2222 2356899999998532    23444444   4


Q ss_pred             cCcEEEEEEeCCCh---hhhhh-------------------------------------------------hheeccccC
Q psy125          296 QGQCAIIMFDVTSR---ITYKN-------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       296 ~~~~~ilv~d~~~~---~s~~~-------------------------------------------------~~e~Sak~~  323 (385)
                      .++++|+|+|+++.   .++++                                                 ++++||+++
T Consensus       235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg  314 (329)
T TIGR02729       235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTG  314 (329)
T ss_pred             hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCC
Confidence            79999999999986   34433                                                 688999999


Q ss_pred             CCchHHHHHHHHHH
Q psy125          324 YNFEKPFLWLARKL  337 (385)
Q Consensus       324 ~~v~~~f~~l~~~i  337 (385)
                      .||+++|.+|++.+
T Consensus       315 ~GI~eL~~~I~~~l  328 (329)
T TIGR02729       315 EGLDELLYALAELL  328 (329)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>PRK12739 elongation factor G; Reviewed

Probab=99.32  E-value=2.3e-11  Score=122.04  Aligned_cols=117  Identities=19%  Similarity=0.133  Sum_probs=85.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCC----CCccc------------ccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEF----EKKYV------------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~----~~~~~------------~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~   71 (385)
                      +..+|+|+|+.++|||||+++|+...-    ...+.            ...|+|.+.......+++..++++||||+.++
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f   86 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF   86 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence            346899999999999999999874211    11111            25567777777777778899999999999877


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~  127 (385)
                      .......+..+|++++|+|+.+....+.. ..+..+..  .++|.++++||+|+..
T Consensus        87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~--~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         87 TIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK--YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECCCCCC
Confidence            66677788999999999999876433322 22222222  4789999999999864

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.32  E-value=2.1e-11  Score=103.84  Aligned_cols=161  Identities=14%  Similarity=0.210  Sum_probs=104.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeE-EEEEEeCCeeEEEEEEeCCCccc-------cccchhhh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLVFHTNRGAIRFNVWDTAGQEK-------FGGLRDGY   78 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~-~~~~~~~~~~~~~~i~Dt~g~~~-------~~~~~~~~   78 (385)
                      ..+++|.|+|.+|+|||||+|+++.+...+..  ..|.+.+ ........+.-.+.+||+||..+       ++.....+
T Consensus        37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~--~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~  114 (296)
T COG3596          37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVS--KVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY  114 (296)
T ss_pred             cCceeEEEecCCCCcHHHHHHHHHhccCceee--ecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence            46789999999999999999998854433221  1121111 11122233447789999999865       33445677


Q ss_pred             hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh---------hhHHHHH--------H--HH
Q psy125           79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK---------VKAKSIV--------F--HR  139 (385)
Q Consensus        79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~---------~~~~~~~--------~--~~  139 (385)
                      ++..|.++++.+..++.--.... ++..+....-+.++++++|.+|....-         ......+        .  ..
T Consensus       115 l~~~DLvL~l~~~~draL~~d~~-f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~  193 (296)
T COG3596         115 LPKLDLVLWLIKADDRALGTDED-FLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF  193 (296)
T ss_pred             hhhccEEEEeccCCCccccCCHH-HHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            88999999999999886444333 333443333458999999999964320         0111111        1  11


Q ss_pred             hcCCeEEEEcCCCCCChHHHHHHHHHHHhcC
Q psy125          140 KKNLQYYDISAKSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       140 ~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~  170 (385)
                      ..-.+++..+.....|++.+...++.++...
T Consensus       194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e  224 (296)
T COG3596         194 QEVKPVVAVSGRLPWGLKELVRALITALPVE  224 (296)
T ss_pred             hhcCCeEEeccccCccHHHHHHHHHHhCccc
Confidence            1234778888899999999999999998644

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.31  E-value=4.2e-12  Score=124.44  Aligned_cols=115  Identities=14%  Similarity=0.185  Sum_probs=88.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcC--cc-----cccc------ccceeeEEEEEEEEe-----CCeeEEEEEeeCCCcccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTG--EF-----EKKY------VATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEKF  286 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~--~~-----~~~~------~~~~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~~  286 (385)
                      -+++++|..++|||||+.+++..  .+     ...+      ..+.|.+.....+.+     ++..+.++||||||+..|
T Consensus         8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF   87 (600)
T PRK05433          8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF   87 (600)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence            47999999999999999998842  11     1111      123345554443333     455788999999999999


Q ss_pred             CcccccccccCcEEEEEEeCCChhhhhh---------------------------------------------hheeccc
Q psy125          287 GGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAK  321 (385)
Q Consensus       287 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak  321 (385)
                      ...+..+++.||++|+|+|+++....+.                                             ++++||+
T Consensus        88 ~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAk  167 (600)
T PRK05433         88 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAK  167 (600)
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecC
Confidence            9888999999999999999998644333                                             3789999


Q ss_pred             cCCCchHHHHHHHHHHhc
Q psy125          322 SNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       322 ~~~~v~~~f~~l~~~i~~  339 (385)
                      +|.||+++|++|++.+..
T Consensus       168 tG~GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        168 TGIGIEEVLEAIVERIPP  185 (600)
T ss_pred             CCCCHHHHHHHHHHhCcc
Confidence            999999999999998754

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.31  E-value=2.9e-11  Score=108.73  Aligned_cols=152  Identities=19%  Similarity=0.196  Sum_probs=109.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCC--C---------------------------CCcccccceeeeEEEEEEeCCee
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGE--F---------------------------EKKYVATLGVEVHPLVFHTNRGA   57 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~--~---------------------------~~~~~~~~g~t~~~~~~~~~~~~   57 (385)
                      .+.++++++|+..+|||||+-+|+-..  .                           ........|+|.+..........
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            477999999999999999998876531  0                           01123456788888888888888


Q ss_pred             EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh---h--hhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--
Q psy125           58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI---T--YKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--  130 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~---~--~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--  130 (385)
                      ..++++|+||+.++..-+..-..++|++|||+|+++.+   +  ..........+.+...-..+|+++||.|+.+-..  
T Consensus        85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r  164 (428)
T COG5256          85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER  164 (428)
T ss_pred             ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence            89999999999888877778889999999999999873   1  1222333444444445556889999999874211  


Q ss_pred             ----hHHHHHHHHhcC-----CeEEEEcCCCCCChHH
Q psy125          131 ----KAKSIVFHRKKN-----LQYYDISAKSNYNFEK  158 (385)
Q Consensus       131 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  158 (385)
                          ..+...+.+..+     .+++++|+..|.|+.+
T Consensus       165 f~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         165 FEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence                222333444444     3699999999999864

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.31  E-value=2.9e-11  Score=109.84  Aligned_cols=155  Identities=16%  Similarity=0.176  Sum_probs=115.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-------Cc------ccccceeeeEEEEE----Ee-CCeeEEEEEEeCCCcccc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFE-------KK------YVATLGVEVHPLVF----HT-NRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~-------~~------~~~~~g~t~~~~~~----~~-~~~~~~~~i~Dt~g~~~~   71 (385)
                      -+..++-+-..|||||..||+...-.       ..      .....|+|......    .. ++..+.++++||||+-+|
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF   89 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   89 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence            36788999999999999998753211       11      12345666554332    22 446799999999999988


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEEEE
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYYDI  148 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~  148 (385)
                      .-.....+..|.++|+|+|++.....+.+.+.+..+.   .+..++-|+||+||+.........+.....+.   ..+.+
T Consensus        90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle---~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~  166 (603)
T COG0481          90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV  166 (603)
T ss_pred             EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH---cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeE
Confidence            8778888899999999999998877666666666654   57889999999999875543333333333443   67899


Q ss_pred             cCCCCCChHHHHHHHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l  167 (385)
                      ||++|.|+++++..|+..+
T Consensus       167 SAKtG~gI~~iLe~Iv~~i  185 (603)
T COG0481         167 SAKTGIGIEDVLEAIVEKI  185 (603)
T ss_pred             ecccCCCHHHHHHHHHhhC
Confidence            9999999999999998885

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.31  E-value=1.3e-11  Score=107.35  Aligned_cols=84  Identities=14%  Similarity=0.059  Sum_probs=55.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc----c---cccccccCc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----L---RDGYYIQGQ  298 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~---~~~~~~~~~  298 (385)
                      +++++|.+|+|||+|++++.+....  .....+++.......+...+..+++|||||+.....    +   ...+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~~--v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKSE--VAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCcc--ccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            6899999999999999998754321  111222332222222222356789999999854431    1   123689999


Q ss_pred             EEEEEEeCCChhh
Q psy125          299 CAIIMFDVTSRIT  311 (385)
Q Consensus       299 ~~ilv~d~~~~~s  311 (385)
                      ++++|+|++++..
T Consensus        80 ~il~V~D~t~~~~   92 (233)
T cd01896          80 LILMVLDATKPEG   92 (233)
T ss_pred             EEEEEecCCcchh
Confidence            9999999998763

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR00503 prfC peptide chain release factor 3

Probab=99.31  E-value=2.4e-11  Score=117.23  Aligned_cols=117  Identities=16%  Similarity=0.158  Sum_probs=83.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcC-CCCC---c----------------ccccceeeeEEEEEEeCCeeEEEEEEeCCC
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTG-EFEK---K----------------YVATLGVEVHPLVFHTNRGAIRFNVWDTAG   67 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~-~~~~---~----------------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g   67 (385)
                      +..+|+|+|+.|+|||||+++|+.. ....   .                .....|.+.........++++.+++|||||
T Consensus        10 ~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG   89 (527)
T TIGR00503        10 KRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG   89 (527)
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence            4569999999999999999997631 1110   0                012335566666677778889999999999


Q ss_pred             ccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125           68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        68 ~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~  127 (385)
                      +.++.......+..+|++|+|+|+.+..... ...++....  ..++|+++++||+|+..
T Consensus        90 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~--~~~~PiivviNKiD~~~  146 (527)
T TIGR00503        90 HEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-TRKLMEVTR--LRDTPIFTFMNKLDRDI  146 (527)
T ss_pred             hhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-HHHHHHHHH--hcCCCEEEEEECccccC
Confidence            9877776677789999999999998752211 122332222  25789999999999854

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>KOG0072|consensus

Probab=99.31  E-value=1.2e-12  Score=99.29  Aligned_cols=113  Identities=26%  Similarity=0.424  Sum_probs=93.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ...+++++|..|+||++++-+.-.++. ....|++|......    ..+..++++||..|+-..+..|..||.+.+++|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v----~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETV----PYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccc----ccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            468999999999999999888544433 44567777554433    3477888999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |.|.+|+.....                                                    ++++||-.|.|+++++
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~  171 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM  171 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence            999999876443                                                    8999999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      +||++.+..+
T Consensus       172 DWL~~~l~~~  181 (182)
T KOG0072|consen  172 DWLQRPLKSR  181 (182)
T ss_pred             HHHHHHHhcc
Confidence            9999987543

>PRK09866 hypothetical protein; Provisional

Probab=99.31  E-value=1.3e-10  Score=110.69  Aligned_cols=108  Identities=18%  Similarity=0.239  Sum_probs=69.6

Q ss_pred             EEEEEEeCCCccccc-c----chhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--
Q psy125           58 IRFNVWDTAGQEKFG-G----LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--  130 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~-~----~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--  130 (385)
                      ..+.++||||..... .    .....+..+|++++|+|+....+..+ ......+.....+.|+++|+||+|+.++..  
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence            346889999986421 1    23456789999999999987544332 122333333212359999999999864221  


Q ss_pred             hHHHHHHH----Hhc---CCeEEEEcCCCCCChHHHHHHHHHH
Q psy125          131 KAKSIVFH----RKK---NLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus       131 ~~~~~~~~----~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      ......+.    ...   ...++++||+.+.|++.++..|...
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            22222221    111   3379999999999999998887764

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.31  E-value=9.9e-12  Score=92.26  Aligned_cols=134  Identities=18%  Similarity=0.156  Sum_probs=89.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEE---EEEeCCCccccccch----hhhhccCc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF---NVWDTAGQEKFGGLR----DGYYIQGQ   83 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~---~i~Dt~g~~~~~~~~----~~~~~~~d   83 (385)
                      |+++||..|+|||||++.+-+....  +..+              ..+.+   -.+||||.--....+    ......++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~l--ykKT--------------QAve~~d~~~IDTPGEy~~~~~~Y~aL~tt~~dad   66 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDTL--YKKT--------------QAVEFNDKGDIDTPGEYFEHPRWYHALITTLQDAD   66 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchhh--hccc--------------ceeeccCccccCCchhhhhhhHHHHHHHHHhhccc
Confidence            8999999999999999996553211  1111              11222   147999953222222    23346899


Q ss_pred             EEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHH
Q psy125           84 CAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        84 ~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~  162 (385)
                      ++++|-.++++++.-.     ..+... ..+|+|-+++|.|+...........|...-+. ++|.+|+.++.|+++++..
T Consensus        67 vi~~v~~and~~s~f~-----p~f~~~-~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~  140 (148)
T COG4917          67 VIIYVHAANDPESRFP-----PGFLDI-GVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDY  140 (148)
T ss_pred             eeeeeecccCccccCC-----cccccc-cccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHH
Confidence            9999999998865321     111111 35669999999999865544444555555444 8999999999999999988


Q ss_pred             HHHH
Q psy125          163 LARK  166 (385)
Q Consensus       163 i~~~  166 (385)
                      |+..
T Consensus       141 L~~~  144 (148)
T COG4917         141 LASL  144 (148)
T ss_pred             HHhh
Confidence            7653

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.30  E-value=1.1e-11  Score=121.45  Aligned_cols=112  Identities=19%  Similarity=0.130  Sum_probs=88.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc---CccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLT---GEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      .|+++|..++|||||++++.+   +.+.+.+.+++..+.....+..++  ..+.+|||||+++|......++.++|++++
T Consensus         2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aIL   79 (581)
T TIGR00475         2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAALL   79 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEEE
Confidence            589999999999999999874   344444444444444444444444  678999999999998777778899999999


Q ss_pred             EEeCCC---hhhhhh------------------------------------------------hheeccccCCCchHHHH
Q psy125          303 MFDVTS---RITYKN------------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       303 v~d~~~---~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      |+|+++   +++++.                                                ++++||++|.||++++.
T Consensus        80 VVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~  159 (581)
T TIGR00475        80 VVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKK  159 (581)
T ss_pred             EEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHH
Confidence            999998   556555                                                57899999999999999


Q ss_pred             HHHHHHhc
Q psy125          332 WLARKLIG  339 (385)
Q Consensus       332 ~l~~~i~~  339 (385)
                      ++.+.+..
T Consensus       160 ~L~~l~~~  167 (581)
T TIGR00475       160 ELKNLLES  167 (581)
T ss_pred             HHHHHHHh
Confidence            98876644

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.29  E-value=6e-12  Score=101.14  Aligned_cols=154  Identities=20%  Similarity=0.255  Sum_probs=91.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE-Ee
Q psy125           12 CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM-FD   90 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV-~d   90 (385)
                      +.++|++|+|||||++.|+.                  ...++.+.+.+...|......   ....++++--+++|- |-
T Consensus        31 ~fl~GpSGAGKSTllkLi~~------------------~e~pt~G~i~~~~~dl~~l~~---~~iP~LRR~IGvVFQD~r   89 (223)
T COG2884          31 VFLTGPSGAGKSTLLKLIYG------------------EERPTRGKILVNGHDLSRLKG---REIPFLRRQIGVVFQDFR   89 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHh------------------hhcCCCceEEECCeecccccc---cccchhhheeeeEeeecc
Confidence            56889999999999999887                  455666777777777654332   122334444343320 00


Q ss_pred             C-CChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125           91 V-TSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus        91 ~-~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      + .+...++++            -.|+.+++.+-+...++. .+..++.-....  ...=....+|+++++..|++++.+
T Consensus        90 LL~~~tvyeNV------------A~pL~v~G~~~~~i~~rV-~~~L~~VgL~~k--~~~lP~~LSGGEQQRvaIARAiV~  154 (223)
T COG2884          90 LLPDRTVYENV------------ALPLRVIGKPPREIRRRV-SEVLDLVGLKHK--ARALPSQLSGGEQQRVAIARAIVN  154 (223)
T ss_pred             ccccchHhhhh------------hhhhhccCCCHHHHHHHH-HHHHHHhccchh--hhcCccccCchHHHHHHHHHHHcc
Confidence            0 011111111            123334443222111111 111222111111  011122345999999999999999


Q ss_pred             CCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          170 DPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       170 ~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      +|.+++     .|||+..+||.....+.+.+.+....
T Consensus       155 ~P~vLl-----ADEPTGNLDp~~s~~im~lfeeinr~  186 (223)
T COG2884         155 QPAVLL-----ADEPTGNLDPDLSWEIMRLFEEINRL  186 (223)
T ss_pred             CCCeEe-----ecCCCCCCChHHHHHHHHHHHHHhhc
Confidence            999999     99999999999999999998887554

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.29  E-value=2.2e-12  Score=108.43  Aligned_cols=153  Identities=24%  Similarity=0.247  Sum_probs=99.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc-cchhhhhccCcEEEEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-GLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~-~~~~~~~~~~d~illV~   89 (385)
                      -++++|++||||||+++++..                  .+.++.+.+.+...|+...+... +...+|.-|..+++   
T Consensus        29 f~vliGpSGsGKTTtLkMINr------------------Liept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLF---   87 (309)
T COG1125          29 FLVLIGPSGSGKTTTLKMINR------------------LIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLF---   87 (309)
T ss_pred             EEEEECCCCCcHHHHHHHHhc------------------ccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccC---
Confidence            368999999999999998666                  66677788888777766543211 12234433332221   


Q ss_pred             eCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEEEEcCCCCCChHHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                              ..   +-     ..+|+.++..+-|.|....  .....++...-+.   .+..--....+|+++++..++++
T Consensus        88 --------Ph---~T-----v~eNIa~VP~L~~w~k~~i--~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RA  149 (309)
T COG1125          88 --------PH---LT-----VAENIATVPKLLGWDKERI--KKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARA  149 (309)
T ss_pred             --------CC---cc-----HHHHHHhhhhhcCCCHHHH--HHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHH
Confidence                    00   00     0012223333445554322  2223333333333   23344455566999999999999


Q ss_pred             HhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhc
Q psy125          167 LIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETA  207 (385)
Q Consensus       167 l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~  207 (385)
                      +...|.+++     +|||+.++||-.+..+.+.+.+...+.
T Consensus       150 LAadP~ilL-----MDEPFgALDpI~R~~lQ~e~~~lq~~l  185 (309)
T COG1125         150 LAADPPILL-----MDEPFGALDPITRKQLQEEIKELQKEL  185 (309)
T ss_pred             HhcCCCeEe-----ecCCccccChhhHHHHHHHHHHHHHHh
Confidence            999999999     999999999999999999998887663

>PRK00007 elongation factor G; Reviewed

Probab=99.29  E-value=3.7e-11  Score=120.51  Aligned_cols=119  Identities=19%  Similarity=0.192  Sum_probs=86.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc--CCCC--Cccc------------ccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLT--GEFE--KKYV------------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~--~~~~--~~~~------------~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~   71 (385)
                      +..+|+|+|+.|+|||||+++|+.  +...  ..+.            ...|+|.+.......+.+..++++||||+.++
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f   88 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF   88 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence            345999999999999999999873  2111  1111            35677887777777778899999999998776


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK  129 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~  129 (385)
                      .......+..+|++++|+|+......+....| ..+..  .++|.++++||+|+....
T Consensus        89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~--~~~p~iv~vNK~D~~~~~  143 (693)
T PRK00007         89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK--YKVPRIAFVNKMDRTGAD  143 (693)
T ss_pred             HHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH--cCCCEEEEEECCCCCCCC
Confidence            55566677899999999998876444432222 22222  478999999999987543

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.28  E-value=2.1e-11  Score=109.40  Aligned_cols=152  Identities=21%  Similarity=0.198  Sum_probs=93.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      -++|+|+||||||||++++++                  ...++.|.+.+...|.............|+++...+.    
T Consensus        33 i~gllG~NGAGKTTllk~l~g------------------l~~p~~G~i~i~G~~~~~~~~~~~~~igy~~~~~~~~----   90 (293)
T COG1131          33 IFGLLGPNGAGKTTLLKILAG------------------LLKPTSGEILVLGYDVVKEPAKVRRRIGYVPQEPSLY----   90 (293)
T ss_pred             EEEEECCCCCCHHHHHHHHhC------------------CcCCCceEEEEcCEeCccCHHHHHhheEEEccCCCCC----
Confidence            479999999999999999887                  5556677888777665442111111122333322110    


Q ss_pred             CCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeE-EEEcCCCCCChHHHHHHHHHHHhc
Q psy125           91 VTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQY-YDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                        ...+..+...++..+..   ..+            .........+....+..- ...-..+.+++++++..|+.++.+
T Consensus        91 --~~lT~~e~l~~~~~l~~---~~~------------~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~  153 (293)
T COG1131          91 --PELTVRENLEFFARLYG---LSK------------EEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLH  153 (293)
T ss_pred             --ccccHHHHHHHHHHHhC---CCh------------hHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhc
Confidence              01111111122222221   100            011112222333333321 122245677999999999999999


Q ss_pred             CCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          170 DPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       170 ~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      +|++++     +|||++++|+..+..+.+.+++...+
T Consensus       154 ~P~lli-----LDEPt~GLDp~~~~~~~~~l~~l~~~  185 (293)
T COG1131         154 DPELLI-----LDEPTSGLDPESRREIWELLRELAKE  185 (293)
T ss_pred             CCCEEE-----ECCCCcCCCHHHHHHHHHHHHHHHhC
Confidence            999999     99999999999999999999998876

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.28  E-value=1.7e-11  Score=114.56  Aligned_cols=116  Identities=17%  Similarity=0.153  Sum_probs=81.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCe-eEEEEEeeCCCccc----cCcccccc---ccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEK----FGGLRDGY---YIQ  296 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~----~~~~~~~~---~~~  296 (385)
                      ..|+++|.+|||||||++++.....  .....+++|.......+... ...+.+|||||+..    ...+...|   +..
T Consensus       159 adVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier  236 (424)
T PRK12297        159 ADVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIER  236 (424)
T ss_pred             CcEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence            4699999999999999999775432  22333444544443333222 45689999999753    22233444   446


Q ss_pred             CcEEEEEEeCCCh---hhhhh----------------------------------------------hheeccccCCCch
Q psy125          297 GQCAIIMFDVTSR---ITYKN----------------------------------------------YYDISAKSNYNFE  327 (385)
Q Consensus       297 ~~~~ilv~d~~~~---~s~~~----------------------------------------------~~e~Sak~~~~v~  327 (385)
                      ++++|+|+|+++.   .++++                                              ++++||+++.|++
T Consensus       237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~  316 (424)
T PRK12297        237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLD  316 (424)
T ss_pred             CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHH
Confidence            9999999999864   34332                                              6889999999999


Q ss_pred             HHHHHHHHHHhcCCC
Q psy125          328 KPFLWLARKLIGDPN  342 (385)
Q Consensus       328 ~~f~~l~~~i~~~~~  342 (385)
                      ++|.+|.+.+...+.
T Consensus       317 eL~~~L~~~l~~~~~  331 (424)
T PRK12297        317 ELLYAVAELLEETPE  331 (424)
T ss_pred             HHHHHHHHHHHhCcc
Confidence            999999998876544

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.28  E-value=1.2e-12  Score=105.99  Aligned_cols=154  Identities=23%  Similarity=0.232  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--chhhhhccCcEEEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--LRDGYYIQGQCAIIM   88 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--~~~~~~~~~d~illV   88 (385)
                      -|+++||||+||||.++++++                  ...++.+.+.+...|......+.+  +-..|++|...+   
T Consensus        32 iVGLLGPNGAGKTT~Fymi~G------------------lv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SI---   90 (243)
T COG1137          32 IVGLLGPNGAGKTTTFYMIVG------------------LVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASI---   90 (243)
T ss_pred             EEEEECCCCCCceeEEEEEEE------------------EEecCCceEEECCcccccCChHHHhhcCcccccccchH---
Confidence            479999999999999999777                  888999999999989887765443  335566664221   


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                              |..+. ..       .|+..++-....|....+...+...+...... ++-...+...+|++..+..|++++
T Consensus        91 --------Fr~Lt-V~-------dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaL  154 (243)
T COG1137          91 --------FRKLT-VE-------DNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARAL  154 (243)
T ss_pred             --------hhcCc-HH-------HHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHH
Confidence                    21110 00       01111111222333322222222233333333 333445667789999999999999


Q ss_pred             hcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          168 IGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       168 ~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ..+|.+++     +|||+.+.||.....+...++.....
T Consensus       155 a~~P~fiL-----LDEPFAGVDPiaV~dIq~iI~~L~~r  188 (243)
T COG1137         155 AANPKFIL-----LDEPFAGVDPIAVIDIQRIIKHLKDR  188 (243)
T ss_pred             hcCCCEEE-----ecCCccCCCchhHHHHHHHHHHHHhC
Confidence            99999999     99999999999999999888877654

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.27  E-value=8.2e-11  Score=111.27  Aligned_cols=159  Identities=14%  Similarity=0.116  Sum_probs=100.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccceeeeEEEEE-----------------EeCC-------------
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVF-----------------HTNR-------------   55 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~~~~g~t~~~~~~-----------------~~~~-------------   55 (385)
                      .+.++|+++|+-..|||||+.+|.+-.... ......|.|.+.-..                 ....             
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH  111 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence            467899999999999999999966422110 011111222111000                 0000             


Q ss_pred             ---eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCCh-hhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh
Q psy125           56 ---GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR-ITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK  131 (385)
Q Consensus        56 ---~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~-~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~  131 (385)
                         -...+.++|+||++.+.......+..+|++++|+|+... ...+.. +.+ .+.....-.++++++||+|+.+....
T Consensus       112 ~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~-ehl-~i~~~lgi~~iIVvlNKiDlv~~~~~  189 (460)
T PTZ00327        112 KMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS-EHL-AAVEIMKLKHIIILQNKIDLVKEAQA  189 (460)
T ss_pred             cccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH-HHH-HHHHHcCCCcEEEEEecccccCHHHH
Confidence               024689999999988776666677899999999999874 222222 222 22222334568899999998753322


Q ss_pred             ----HHHHHHHHh---cCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125          132 ----AKSIVFHRK---KNLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       132 ----~~~~~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                          .++..+...   ...+++++||.++.|++.++..|...+
T Consensus       190 ~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        190 QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence                222222211   356899999999999999999888754

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.26  E-value=2e-11  Score=119.63  Aligned_cols=105  Identities=13%  Similarity=0.064  Sum_probs=78.4

Q ss_pred             CCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc------ccccc--ccCcEEEE
Q psy125          231 GDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL------RDGYY--IQGQCAII  302 (385)
Q Consensus       231 G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~------~~~~~--~~~~~~il  302 (385)
                      |.+||||||++|++.+..+  .....+|+|.......+...+..+.+|||||+..+...      ...|+  +++|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ--TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC--eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8899999999999886654  34445566665554433333456899999999887664      23343  47999999


Q ss_pred             EEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125          303 MFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWLARKL  337 (385)
Q Consensus       303 v~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l~~~i  337 (385)
                      |+|.++.+....                                         +++|||++|.|++++|+++++..
T Consensus        79 VvDat~ler~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437        79 VVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             EecCCcchhhHHHHHHHHhcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            999997543222                                         79999999999999999998864

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=1.5e-10  Score=107.70  Aligned_cols=155  Identities=15%  Similarity=0.192  Sum_probs=108.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC---eeEEEEEEeCCCccccccchhhhhccCc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR---GAIRFNVWDTAGQEKFGGLRDGYYIQGQ   83 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~---~~~~~~i~Dt~g~~~~~~~~~~~~~~~d   83 (385)
                      .+.+-|+++|+--.|||||+..+=..+...  ...-|.|...--+.+..   ....+.++||||++.|..++..-..-+|
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~Va~--~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtD   80 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTNVAA--GEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTD   80 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCcccc--ccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCcccc
Confidence            355789999999999999999844432221  12344555544444333   3457899999999998888877778899


Q ss_pred             EEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhc--------CCeEEEEcCCCCCC
Q psy125           84 CAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK--------NLQYYDISAKSNYN  155 (385)
Q Consensus        84 ~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~--------~~~~~~~Sa~~~~g  155 (385)
                      .+++|+++++..-.+.+.. +..+.  ..+.|+++..||+|..+........++....        ...++++||++|.|
T Consensus        81 IaILVVa~dDGv~pQTiEA-I~hak--~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G  157 (509)
T COG0532          81 IAILVVAADDGVMPQTIEA-INHAK--AAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG  157 (509)
T ss_pred             EEEEEEEccCCcchhHHHH-HHHHH--HCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence            9999999999765554322 22222  2689999999999987544333222222222        13689999999999


Q ss_pred             hHHHHHHHHHH
Q psy125          156 FEKPFLWLARK  166 (385)
Q Consensus       156 i~~l~~~i~~~  166 (385)
                      +.+++..+.-.
T Consensus       158 i~eLL~~ill~  168 (509)
T COG0532         158 IDELLELILLL  168 (509)
T ss_pred             HHHHHHHHHHH
Confidence            99998877654

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.26  E-value=1.9e-11  Score=104.32  Aligned_cols=67  Identities=16%  Similarity=0.159  Sum_probs=54.9

Q ss_pred             EEEEEeeCCCccccCcccccccccCcEEEEEEeCCCh----hhhhh----------------------------------
Q psy125          273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR----ITYKN----------------------------------  314 (385)
Q Consensus       273 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~----~s~~~----------------------------------  314 (385)
                      ..+.+|||||++.|....-..+..+|++++|+|++++    .+++.                                  
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~~i  162 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQALENYEQI  162 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHHHHHHHH
Confidence            6789999999988766666667788999999999973    23322                                  


Q ss_pred             -------------hheeccccCCCchHHHHHHHHHHhc
Q psy125          315 -------------YYDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       315 -------------~~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                                   ++++||++|.||+++|.+|.+.+..
T Consensus       163 ~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         163 KKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence                         5789999999999999999987754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>KOG1424|consensus

Probab=99.25  E-value=1.1e-10  Score=107.29  Aligned_cols=193  Identities=14%  Similarity=0.083  Sum_probs=113.8

Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCC----
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKS----  152 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~----  152 (385)
                      ..+..+|++|.++|+.++.-|... .+...+....+++..++++||.||........+..+....+++++..||..    
T Consensus       170 RVlErSDivvqIVDARnPllfr~~-dLe~Yvke~d~~K~~~LLvNKaDLl~~~qr~aWa~YF~~~ni~~vf~SA~~at~~  248 (562)
T KOG1424|consen  170 RVLERSDIVVQIVDARNPLLFRSP-DLEDYVKEVDPSKANVLLVNKADLLPPEQRVAWAEYFRQNNIPVVFFSALAATEQ  248 (562)
T ss_pred             HHHhhcceEEEEeecCCccccCCh-hHHHHHhccccccceEEEEehhhcCCHHHHHHHHHHHHhcCceEEEEeccccccc
Confidence            345789999999999999877542 333333334456788999999999998888888888888899999999875    


Q ss_pred             CCC--hHHHHHHHHHHHhcCCCcccccCCCCCCC-CCCCChhhhhhhHHhHHHH-HHhcCCCCchhhhhhcCCCCeeEEE
Q psy125          153 NYN--FEKPFLWLARKLIGDPNLEFVAMPALLPP-EVTMDPQWQSRIEQDLKEA-QETALPDDDEDLMAAEMDMPSFKCV  228 (385)
Q Consensus       153 ~~g--i~~l~~~i~~~l~~~~~~~~~~~~~~~ep-~~~~d~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~i~  228 (385)
                      +.+  +.+.+...-.-.........     .++- ....+......+.. +... ........ +  .. ......+.|.
T Consensus       249 ~~~~~~~e~~r~~d~~~~~~~~~~~-----~~~d~~i~r~~~d~~e~~~-v~~~~~~s~~~~~-~--t~-~~~~~~vtVG  318 (562)
T KOG1424|consen  249 LESKVLKEDRRSLDGVSRALGAIFV-----GEVDLKIARDKGDGEEIED-VEQLRLISAMEPT-P--TG-ERYKDVVTVG  318 (562)
T ss_pred             ccccchhhhhhcccchhhhcccccc-----ccchhhhhhhcccccchhh-HHhhhhhhccccC-C--CC-cCCCceeEEE
Confidence            111  11111110000000000000     0000 00000000001111 1111 01100000 0  00 1111257899


Q ss_pred             EECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc
Q psy125          229 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE  284 (385)
Q Consensus       229 ~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~  284 (385)
                      ++|-||||||++||.+. +.-...+++|+|-|.+.+++.+...   +.+.|+||.-
T Consensus       319 ~VGYPNVGKSSTINaLv-G~KkVsVS~TPGkTKHFQTi~ls~~---v~LCDCPGLV  370 (562)
T KOG1424|consen  319 FVGYPNVGKSSTINALV-GRKKVSVSSTPGKTKHFQTIFLSPS---VCLCDCPGLV  370 (562)
T ss_pred             eecCCCCchhHHHHHHh-cCceeeeecCCCCcceeEEEEcCCC---ceecCCCCcc
Confidence            99999999999999965 5556778999999999999988765   5799999963

>KOG1423|consensus

Probab=99.25  E-value=4.4e-11  Score=102.90  Aligned_cols=127  Identities=14%  Similarity=0.151  Sum_probs=95.7

Q ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc--------
Q psy125          220 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD--------  291 (385)
Q Consensus       220 ~~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--------  291 (385)
                      .....+.++++|.||||||+|.|..++... ...+....+|+......+..+...+.++||||.-.-...+.        
T Consensus        68 e~~k~L~vavIG~PNvGKStLtN~mig~kv-~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l  146 (379)
T KOG1423|consen   68 EAQKSLYVAVIGAPNVGKSTLTNQMIGQKV-SAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL  146 (379)
T ss_pred             hcceEEEEEEEcCCCcchhhhhhHhhCCcc-ccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence            345679999999999999999999876654 44455566888888777777788899999999643221111        


Q ss_pred             ----cccccCcEEEEEEeCCChhhhhh-----------------------------------------------------
Q psy125          292 ----GYYIQGQCAIIMFDVTSRITYKN-----------------------------------------------------  314 (385)
Q Consensus       292 ----~~~~~~~~~ilv~d~~~~~s~~~-----------------------------------------------------  314 (385)
                          ..+..||++++|+|+++....-+                                                     
T Consensus       147 q~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~  226 (379)
T KOG1423|consen  147 QNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK  226 (379)
T ss_pred             hCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence                23568999999999996332222                                                     


Q ss_pred             ---------------------hheeccccCCCchHHHHHHHHHHhcCCCccccc
Q psy125          315 ---------------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA  347 (385)
Q Consensus       315 ---------------------~~e~Sak~~~~v~~~f~~l~~~i~~~~~~~~~~  347 (385)
                                           +|.+||++|.||+++=++|..+....+-.....
T Consensus       227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~  280 (379)
T KOG1423|consen  227 FTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPAD  280 (379)
T ss_pred             hccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcc
Confidence                                 788999999999999999998876655444333

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.24  E-value=1e-10  Score=102.12  Aligned_cols=119  Identities=11%  Similarity=0.060  Sum_probs=74.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc---c-------hh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---L-------RD   76 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~---~-------~~   76 (385)
                      ...++|+|+|.+|||||||+|+|++..... .....+.|.....+.....+..+.++||||......   .       ..
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~~~~-v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~  107 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGERKAA-TSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK  107 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence            457999999999999999999988765432 233444555555555555667899999999764421   0       11


Q ss_pred             hhh--ccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcC---CCCEEEEEeCCCCcc
Q psy125           77 GYY--IQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKD  127 (385)
Q Consensus        77 ~~~--~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~---~~~~ilv~nK~Dl~~  127 (385)
                      .++  ...+++++|..++... .... ...+..+...++   -.++++|.|++|...
T Consensus       108 ~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~~  163 (249)
T cd01853         108 RYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASSP  163 (249)
T ss_pred             HHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccCC
Confidence            222  2578888887665432 1111 123333333222   246899999999753

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.23  E-value=1.2e-10  Score=103.05  Aligned_cols=120  Identities=16%  Similarity=0.154  Sum_probs=70.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccch---hhhh---
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR---DGYY---   79 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~---~~~~---   79 (385)
                      +...++|+++|.+|+||||++|+|++.... .++...+.+..........++..+.++||||........   ...+   
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~v~-~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGERIA-TVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            356789999999999999999998875432 222222222222222223356889999999986432211   1111   


Q ss_pred             ---ccCcEEEEEEeCCCh--hhh-hcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125           80 ---IQGQCAIIMFDVTSR--ITY-KNVPNWHRDLVRVCENIPIVLCGNKVDIK  126 (385)
Q Consensus        80 ---~~~d~illV~d~~~~--~~~-~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~  126 (385)
                         ...|++|+|..++..  ... ..+...+..+.+..--.++++++++.|..
T Consensus       114 l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS  166 (313)
T ss_pred             hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence               268999999665432  111 11222233332211235689999999965

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.22  E-value=1.9e-10  Score=99.77  Aligned_cols=154  Identities=20%  Similarity=0.233  Sum_probs=91.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE-EE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII-MF   89 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill-V~   89 (385)
                      .++++|.+|+|||||++++..                  .-.++.|.+.+...|........   ...+++--+.|| =|
T Consensus        34 I~GIIG~SGAGKSTLiR~iN~------------------Le~PtsG~v~v~G~di~~l~~~~---Lr~~R~~IGMIFQhF   92 (339)
T COG1135          34 IFGIIGYSGAGKSTLLRLINL------------------LERPTSGSVFVDGQDLTALSEAE---LRQLRQKIGMIFQHF   92 (339)
T ss_pred             EEEEEcCCCCcHHHHHHHHhc------------------cCCCCCceEEEcCEecccCChHH---HHHHHhhccEEeccc
Confidence            469999999999999998655                  44555667776666654432110   011112212221 01


Q ss_pred             eCCC-hhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHHHHHH
Q psy125           90 DVTS-RITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus        90 d~~~-~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                      .+-. ...++++            -.|.-+.+  .+  ..+......++...-+. ....-.....+|+++++..|+|++
T Consensus        93 nLLssrTV~~Nv------------A~PLeiag--~~--k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARAL  156 (339)
T COG1135          93 NLLSSRTVFENV------------AFPLELAG--VP--KAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARAL  156 (339)
T ss_pred             cccccchHHhhh------------hhhHhhcC--CC--HHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHH
Confidence            1111 1111111            11211111  11  22223333344444333 222223345669999999999999


Q ss_pred             hcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          168 IGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       168 ~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ..+|++++     +||+++++||.....+.+.|++...+
T Consensus       157 a~~P~iLL-----~DEaTSALDP~TT~sIL~LL~~In~~  190 (339)
T COG1135         157 ANNPKILL-----CDEATSALDPETTQSILELLKDINRE  190 (339)
T ss_pred             hcCCCEEE-----ecCccccCChHHHHHHHHHHHHHHHH
Confidence            99999999     99999999999999999999887654

>cd00880 Era_like Era (E

Probab=99.22  E-value=3.5e-11  Score=98.17  Aligned_cols=108  Identities=19%  Similarity=0.210  Sum_probs=78.0

Q ss_pred             EECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC-eeEEEEEeeCCCccccCcccc-------cccccCcEE
Q psy125          229 LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRD-------GYYIQGQCA  300 (385)
Q Consensus       229 ~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~-------~~~~~~~~~  300 (385)
                      ++|..|+||||+++++....+. ......+.+.......... ....+.+|||||+..+.....       .+++.+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVA-IVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCcccc-ccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            5799999999999997754333 1222222333322222221 145689999999887765444       378899999


Q ss_pred             EEEEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHH
Q psy125          301 IIMFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       301 ilv~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      ++|+|.++..+...                                               ++++||+++.||+++++++
T Consensus        80 l~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l  159 (163)
T cd00880          80 LFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL  159 (163)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHH
Confidence            99999998766555                                               8899999999999999999


Q ss_pred             HHHH
Q psy125          334 ARKL  337 (385)
Q Consensus       334 ~~~i  337 (385)
                      .+.+
T Consensus       160 ~~~~  163 (163)
T cd00880         160 IEAL  163 (163)
T ss_pred             HhhC
Confidence            8753

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>PRK10218 GTP-binding protein; Provisional

Probab=99.21  E-value=6e-11  Score=115.80  Aligned_cols=117  Identities=17%  Similarity=0.229  Sum_probs=94.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc--Ccccccc------------ccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLT--GEFEKKY------------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL  289 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~  289 (385)
                      .-+|+++|..++|||||+.+++.  +.|...+            ..+.|.+.......+....+++.+|||||+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            35899999999999999999985  4443322            235677887777777778889999999999999999


Q ss_pred             cccccccCcEEEEEEeCCChhhhhh----------------------------------------------------hhe
Q psy125          290 RDGYYIQGQCAIIMFDVTSRITYKN----------------------------------------------------YYD  317 (385)
Q Consensus       290 ~~~~~~~~~~~ilv~d~~~~~s~~~----------------------------------------------------~~e  317 (385)
                      +..+++.+|++|+|+|+++....+.                                                    ++.
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~  164 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVY  164 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEE
Confidence            9999999999999999998633222                                                    367


Q ss_pred             eccccCC----------CchHHHHHHHHHHhcC
Q psy125          318 ISAKSNY----------NFEKPFLWLARKLIGD  340 (385)
Q Consensus       318 ~Sak~~~----------~v~~~f~~l~~~i~~~  340 (385)
                      +||++|.          ++..+|+.|+..++..
T Consensus       165 ~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        165 ASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             eEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence            8999998          5888888888887644

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.21  E-value=3.8e-11  Score=99.13  Aligned_cols=108  Identities=15%  Similarity=0.184  Sum_probs=79.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc----------cCcccccccc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK----------FGGLRDGYYI  295 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~~  295 (385)
                      .|+++|.+|+|||||++.+..+.+...+.++.+.+.....+..++   .+.+|||||...          +..+...|+.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            379999999999999999887777777788887777665555544   688999999432          3333344544


Q ss_pred             ---cCcEEEEEEeCCChhhhhh------------------------------------------------hheeccccCC
Q psy125          296 ---QGQCAIIMFDVTSRITYKN------------------------------------------------YYDISAKSNY  324 (385)
Q Consensus       296 ---~~~~~ilv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~  324 (385)
                         .++++++++|.++..+...                                                ++++||+++.
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~  157 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQ  157 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCC
Confidence               4578899999986532222                                                5688888888


Q ss_pred             CchHHHHHHHHH
Q psy125          325 NFEKPFLWLARK  336 (385)
Q Consensus       325 ~v~~~f~~l~~~  336 (385)
                      |+.+++.+|.+.
T Consensus       158 ~~~~l~~~l~~~  169 (170)
T cd01876         158 GIDELRALIEKW  169 (170)
T ss_pred             CHHHHHHHHHHh
Confidence            888888888764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.21  E-value=2.2e-11  Score=110.42  Aligned_cols=54  Identities=28%  Similarity=0.284  Sum_probs=48.4

Q ss_pred             EEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125          147 DISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE  205 (385)
Q Consensus       147 ~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~  205 (385)
                      .......+++++++..|++++.++|++++     +|||++++|+..+..+.+.+++...
T Consensus       133 ~~~~~~LS~G~~qrl~la~aL~~~P~lll-----LDEPt~gLD~~~~~~l~~~l~~l~~  186 (306)
T PRK13537        133 DAKVGELSGGMKRRLTLARALVNDPDVLV-----LDEPTTGLDPQARHLMWERLRSLLA  186 (306)
T ss_pred             cCchhhCCHHHHHHHHHHHHHhCCCCEEE-----EeCCCcCCCHHHHHHHHHHHHHHHh
Confidence            34456678999999999999999999999     9999999999999999999988743

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.20  E-value=9.6e-11  Score=98.38  Aligned_cols=53  Identities=25%  Similarity=0.255  Sum_probs=48.3

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhc
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETA  207 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~  207 (385)
                      ....+|++.++..|++++.-+|++++     +|||++.+|...+..+.+.+.+...++
T Consensus       139 P~eLSGGQ~QRiaIARAL~~~PklLI-----lDEptSaLD~siQa~IlnlL~~l~~~~  191 (252)
T COG1124         139 PHELSGGQRQRIAIARALIPEPKLLI-----LDEPTSALDVSVQAQILNLLLELKKER  191 (252)
T ss_pred             chhcChhHHHHHHHHHHhccCCCEEE-----ecCchhhhcHHHHHHHHHHHHHHHHhc
Confidence            33455999999999999999999999     999999999999999999999987763

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.20  E-value=8.8e-11  Score=105.33  Aligned_cols=151  Identities=18%  Similarity=0.203  Sum_probs=92.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      -++|+||+|||||||++.|.+                  ...++.|.+.+...|........+ ...+..|.      |.
T Consensus        31 f~vllGPSGcGKSTlLr~IAG------------------Le~~~~G~I~i~g~~vt~l~P~~R-~iamVFQ~------yA   85 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAG------------------LEEPTSGEILIDGRDVTDLPPEKR-GIAMVFQN------YA   85 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhC------------------CCCCCCceEEECCEECCCCChhHC-CEEEEeCC------cc
Confidence            378999999999999999888                  566677788877766655332111 11111111      01


Q ss_pred             CCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125           91 VTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      +.-+-+.      +.       |+-+-+-..|..  ..+......+.++..+. .+...-....+|+++++.++++++..
T Consensus        86 LyPhmtV------~~-------Niaf~Lk~~~~~--k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr  150 (338)
T COG3839          86 LYPHMTV------YE-------NIAFGLKLRGVP--KAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR  150 (338)
T ss_pred             ccCCCcH------HH-------HhhhhhhhCCCc--hHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence            1111010      11       111111111111  12222233333333333 34444456677999999999999999


Q ss_pred             CCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          170 DPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       170 ~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      +|++++     +|||.+.+|...+..+...+++...+
T Consensus       151 ~P~v~L-----~DEPlSnLDa~lR~~mr~ei~~lh~~  182 (338)
T COG3839         151 KPKVFL-----LDEPLSNLDAKLRVLMRSEIKKLHER  182 (338)
T ss_pred             CCCEEE-----ecCchhHhhHHHHHHHHHHHHHHHHh
Confidence            999999     99999999999999999999986554

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.20  E-value=2.8e-11  Score=117.69  Aligned_cols=115  Identities=20%  Similarity=0.222  Sum_probs=82.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccc----cccceeeEEEEEEEEe------------CCeeEEEEEeeCCCccccCc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHT------------NRGAIRFNVWDTAGQEKFGG  288 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~l~i~Dt~G~~~~~~  288 (385)
                      --|+++|.+++|||||++++....+...    +..++|.++.......            ......+.+|||||++.|..
T Consensus         5 piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~   84 (590)
T TIGR00491         5 PIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN   84 (590)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence            3599999999999999999886655422    3344454443221100            00112378999999999999


Q ss_pred             ccccccccCcEEEEEEeCCC---hhhhhh-------------------------------hheeccccCCCch----HHH
Q psy125          289 LRDGYYIQGQCAIIMFDVTS---RITYKN-------------------------------YYDISAKSNYNFE----KPF  330 (385)
Q Consensus       289 ~~~~~~~~~~~~ilv~d~~~---~~s~~~-------------------------------~~e~Sak~~~~v~----~~f  330 (385)
                      ++..+++.+|++++|||+++   +.+++.                               |+|+||+.+.+|.    +.|
T Consensus        85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~~~  164 (590)
T TIGR00491        85 LRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDTKV  164 (590)
T ss_pred             HHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHHHH
Confidence            99999999999999999997   566654                               7899999987665    455


Q ss_pred             HHHHHHHhc
Q psy125          331 LWLARKLIG  339 (385)
Q Consensus       331 ~~l~~~i~~  339 (385)
                      ..++.++.+
T Consensus       165 ~~lv~~l~~  173 (590)
T TIGR00491       165 YNLVIKLHE  173 (590)
T ss_pred             HHHHHHHHh
Confidence            566655543

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.20  E-value=1.3e-10  Score=96.85  Aligned_cols=153  Identities=20%  Similarity=0.272  Sum_probs=92.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccch--hhhhccCcEEEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR--DGYYIQGQCAIIM   88 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~--~~~~~~~d~illV   88 (385)
                      -++|+|+||+|||||++++.+                  ..+...+.+.+...|..+........  ..+.++..     
T Consensus        31 iv~llG~NGaGKTTlLkti~G------------------l~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR-----   87 (237)
T COG0410          31 IVALLGRNGAGKTTLLKTIMG------------------LVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGR-----   87 (237)
T ss_pred             EEEEECCCCCCHHHHHHHHhC------------------CCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccc-----
Confidence            579999999999999999888                  55556688888888887765332221  22222221     


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                            ..|..+. ....+.       +-....+.+........+..+++-. ...-...-+-+.+|++++...|+++++
T Consensus        88 ------~iF~~LT-VeENL~-------~g~~~~~~~~~~~~~~e~v~~lFP~-Lker~~~~aG~LSGGEQQMLAiaRALm  152 (237)
T COG0410          88 ------RIFPRLT-VEENLL-------LGAYARRDKEAQERDLEEVYELFPR-LKERRNQRAGTLSGGEQQMLAIARALM  152 (237)
T ss_pred             ------cchhhCc-HHHHHh-------hhhhcccccccccccHHHHHHHChh-HHHHhcCcccCCChHHHHHHHHHHHHh
Confidence                  1122110 111111       0000111011111101112211100 001112235567799999999999999


Q ss_pred             cCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          169 GDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       169 ~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      .+|++++     +|||+.++.|.-...+.+.+++...+
T Consensus       153 ~~PklLL-----LDEPs~GLaP~iv~~I~~~i~~l~~~  185 (237)
T COG0410         153 SRPKLLL-----LDEPSEGLAPKIVEEIFEAIKELRKE  185 (237)
T ss_pred             cCCCEEE-----ecCCccCcCHHHHHHHHHHHHHHHHc
Confidence            9999999     99999999999999999999887654

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.20  E-value=2.6e-11  Score=111.15  Aligned_cols=54  Identities=31%  Similarity=0.307  Sum_probs=48.5

Q ss_pred             EEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125          147 DISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE  205 (385)
Q Consensus       147 ~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~  205 (385)
                      .....+.+++++++..|++++..+|++++     +|||++++|+..+..+.+.+++...
T Consensus       167 ~~~~~~LS~G~kqrv~lA~aL~~~P~lLi-----LDEPt~gLD~~~r~~l~~~l~~l~~  220 (340)
T PRK13536        167 DARVSDLSGGMKRRLTLARALINDPQLLI-----LDEPTTGLDPHARHLIWERLRSLLA  220 (340)
T ss_pred             CCChhhCCHHHHHHHHHHHHHhcCCCEEE-----EECCCCCCCHHHHHHHHHHHHHHHh
Confidence            33455677999999999999999999999     9999999999999999999998754

>KOG2484|consensus

Probab=99.19  E-value=1.2e-10  Score=103.83  Aligned_cols=167  Identities=13%  Similarity=0.108  Sum_probs=109.6

Q ss_pred             hhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCC
Q psy125           76 DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYN  155 (385)
Q Consensus        76 ~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (385)
                      ...+..+|++|-|+|+.||.+-..-. .-..+.+..+++..|+|+||+|+...+...++..+.+..+..+.+..+....+
T Consensus       141 rkvve~sDVVleVlDARDPlgtR~~~-vE~~V~~~~gnKkLILVLNK~DLVPrEv~e~Wl~YLr~~~ptv~fkast~~~~  219 (435)
T KOG2484|consen  141 RKVVEASDVVLEVLDARDPLGTRCPE-VEEAVLQAHGNKKLILVLNKIDLVPREVVEKWLVYLRREGPTVAFKASTQMQN  219 (435)
T ss_pred             HHHHhhhheEEEeeeccCCCCCCChh-HHHHHHhccCCceEEEEeehhccCCHHHHHHHHHHHHhhCCcceeeccccccc
Confidence            34456799999999999998765422 22223333367899999999999999988888888888777666655443322


Q ss_pred             hHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCC
Q psy125          156 FEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGT  235 (385)
Q Consensus       156 i~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~v  235 (385)
                      ...       ...+                     .++-.-.+.+.+....+...        ..-...+++.|+|-+||
T Consensus       220 ~~~-------~~~~---------------------~s~c~gae~l~~~lgny~~~--------~~lk~sIrvGViG~PNV  263 (435)
T KOG2484|consen  220 SNS-------KNLQ---------------------SSVCFGAETLMKVLGNYCRK--------GELKTSIRVGIIGYPNV  263 (435)
T ss_pred             ccc-------cccc---------------------cchhhhHHHHHHHhcCcccc--------cccCcceEeeeecCCCC
Confidence            210       0000                     00000111222221111100        11124689999999999


Q ss_pred             CHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125          236 GKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ  283 (385)
Q Consensus       236 gks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~  283 (385)
                      ||||+||++...+ .....+++|.|...+.+.++..   |.|+|.||.
T Consensus       264 GKSSvINsL~~~k-~C~vg~~pGvT~smqeV~Ldk~---i~llDsPgi  307 (435)
T KOG2484|consen  264 GKSSVINSLKRRK-ACNVGNVPGVTRSMQEVKLDKK---IRLLDSPGI  307 (435)
T ss_pred             ChhHHHHHHHHhc-cccCCCCccchhhhhheeccCC---ceeccCCce
Confidence            9999999976544 4778889999999998888764   689999996

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.19  E-value=8.8e-11  Score=95.41  Aligned_cols=147  Identities=20%  Similarity=0.272  Sum_probs=92.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      -++++|+||+||||+++.|.+                  ...++.+.+.+..+|+...........+.+....+      
T Consensus        30 i~GlLG~NGAGKTT~LRmiat------------------lL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~g------   85 (245)
T COG4555          30 ITGLLGENGAGKTTLLRMIAT------------------LLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERG------   85 (245)
T ss_pred             EEEEEcCCCCCchhHHHHHHH------------------hccCCCceEEEeecccccChHHHhhhcceecCCcC------
Confidence            468999999999999999777                  77888889999988886554322222221111111      


Q ss_pred             CCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHH------HHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           91 VTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSI------VFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      +..+-+.++...++..+..               +..........      ++.......+...|     -+.+++..|+
T Consensus        86 lY~RlT~rEnl~~Fa~L~~---------------l~~~~~kari~~l~k~l~l~~~~~rRv~~~S-----~G~kqkV~iA  145 (245)
T COG4555          86 LYARLTARENLKYFARLNG---------------LSRKEIKARIAELSKRLQLLEYLDRRVGEFS-----TGMKQKVAIA  145 (245)
T ss_pred             hhhhhhHHHHHHHHHHHhh---------------hhhhHHHHHHHHHHHHhChHHHHHHHHhhhc-----hhhHHHHHHH
Confidence            1111122222233333332               11111111111      12222222344444     7899999999


Q ss_pred             HHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          165 RKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       165 ~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      +++.++|.+++     +|||++++|...+..+.+.+.....+
T Consensus       146 RAlvh~P~i~v-----lDEP~sGLDi~~~r~~~dfi~q~k~e  182 (245)
T COG4555         146 RALVHDPSILV-----LDEPTSGLDIRTRRKFHDFIKQLKNE  182 (245)
T ss_pred             HHHhcCCCeEE-----EcCCCCCccHHHHHHHHHHHHHhhcC
Confidence            99999999999     99999999999999999988876553

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.19  E-value=1.3e-10  Score=116.65  Aligned_cols=112  Identities=15%  Similarity=0.114  Sum_probs=89.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc----------cc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD----------GY  293 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~----------~~  293 (385)
                      ..+|+++|.+||||||++|++.+...  .+...+|+|...+...+......+.+|||||+..+.....          .|
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            46899999999999999999875433  5667788998888777777778899999999987754322          23


Q ss_pred             c--ccCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHH
Q psy125          294 Y--IQGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       294 ~--~~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      +  ..+|++++|+|.++.+.-..                                         ++++||++|.|++++.
T Consensus        81 l~~~~aD~vI~VvDat~ler~l~l~~ql~e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~  160 (772)
T PRK09554         81 ILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALK  160 (772)
T ss_pred             HhccCCCEEEEEecCCcchhhHHHHHHHHHcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHH
Confidence            2  48999999999998654222                                         7899999999999999


Q ss_pred             HHHHHHH
Q psy125          331 LWLARKL  337 (385)
Q Consensus       331 ~~l~~~i  337 (385)
                      +.+.+..
T Consensus       161 ~~I~~~~  167 (772)
T PRK09554        161 LAIDRHQ  167 (772)
T ss_pred             HHHHHhh
Confidence            8888754

>PRK01889 GTPase RsgA; Reviewed

Probab=99.18  E-value=4e-10  Score=103.95  Aligned_cols=144  Identities=17%  Similarity=0.206  Sum_probs=90.6

Q ss_pred             hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCC
Q psy125           78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYN  155 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (385)
                      ...+.|.+++|+++........++.++..+..  .+++.++|+||+|+.+...  ......+  ..+++++.+|++++.|
T Consensus       109 iaANvD~vliV~s~~p~~~~~~ldr~L~~a~~--~~i~piIVLNK~DL~~~~~~~~~~~~~~--~~g~~Vi~vSa~~g~g  184 (356)
T PRK01889        109 IAANVDTVFIVCSLNHDFNLRRIERYLALAWE--SGAEPVIVLTKADLCEDAEEKIAEVEAL--APGVPVLAVSALDGEG  184 (356)
T ss_pred             EEEeCCEEEEEEecCCCCChhHHHHHHHHHHH--cCCCEEEEEEChhcCCCHHHHHHHHHHh--CCCCcEEEEECCCCcc
Confidence            35789999999999754444445555544433  5778899999999975421  1112211  3467899999999999


Q ss_pred             hHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCC
Q psy125          156 FEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGT  235 (385)
Q Consensus       156 i~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~v  235 (385)
                      ++++...+..                                                          .-+++++|.+|+
T Consensus       185 l~~L~~~L~~----------------------------------------------------------g~~~~lvG~sgv  206 (356)
T PRK01889        185 LDVLAAWLSG----------------------------------------------------------GKTVALLGSSGV  206 (356)
T ss_pred             HHHHHHHhhc----------------------------------------------------------CCEEEEECCCCc
Confidence            8876665321                                                          126899999999


Q ss_pred             CHHHHHHHHhcCccccc------cccceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125          236 GKTTFVKRHLTGEFEKK------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF  286 (385)
Q Consensus       236 gks~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  286 (385)
                      |||++++.++...-...      ......++.......+.++.   .++||||...+
T Consensus       207 GKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~---~l~DtpG~~~~  260 (356)
T PRK01889        207 GKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGG---LLIDTPGMREL  260 (356)
T ss_pred             cHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCC---eecCCCchhhh
Confidence            99999999774321110      00111122223333333332   58899997654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	385
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-106
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		1e-75
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-106
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		1e-75
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		1e-105
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		2e-73
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		1e-105
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		3e-75
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		1e-105
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		6e-75
1byu_A	216	Canine Gdp-Ran Length = 216		1e-105
1byu_A	216	Canine Gdp-Ran Length = 216		6e-75
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		1e-105
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		5e-75
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-105
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		9e-75
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-105
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-74
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		1e-103
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		3e-73
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		1e-95
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		8e-61
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		4e-95
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		1e-60
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		5e-95
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		9e-62
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		6e-94
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		4e-59
2bku_A	177	Kap95p:rangtp Complex Length = 177		1e-93
2bku_A	177	Kap95p:rangtp Complex Length = 177		6e-59
3icq_B	171	Karyopherin Nuclear State Length = 171		9e-88
3icq_B	171	Karyopherin Nuclear State Length = 171		3e-53
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-87
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		3e-53
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		8e-44
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		8e-29
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		6e-24
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		9e-12
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		1e-23
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-12
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-23
1vg1_A	185	Gdp-bound Rab7 Length = 185		4e-12
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-23
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		3e-12
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		5e-23
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		4e-13
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		1e-22
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-11
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		3e-22
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		3e-13
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		3e-22
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		6e-11
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		3e-22
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		4e-13
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		6e-22
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		8e-13
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		1e-21
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		6e-11
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-21
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-13
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		3e-21
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		1e-11
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-21
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-11
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		4e-21
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-11
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-21
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		3e-12
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		5e-21
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		1e-12
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		5e-21
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		5e-12
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		5e-21
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		1e-11
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		6e-21
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		4e-12
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		8e-21
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		3e-11
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		8e-21
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		6e-11
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		9e-21
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		9e-13
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		9e-21
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		5e-11
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		1e-20
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		6e-11
2efc_B	181	Ara7-GdpATVPS9A Length = 181		1e-20
2efc_B	181	Ara7-GdpATVPS9A Length = 181		4e-12
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		1e-20
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		7e-11
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-20
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-11
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-20
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		8e-11
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		1e-20
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		5e-10
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-20
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-11
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-20
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		1e-11
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		2e-20
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		8e-12
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-20
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		1e-10
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		2e-20
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-10
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-20
4fmc_B	171	Espg-Rab1 Complex Length = 171		8e-12
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		3e-20
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		2e-10
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		3e-20
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		1e-11
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-20
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-10
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		3e-20
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		9e-13
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		3e-20
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		1e-11
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		4e-20
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		1e-12
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		4e-20
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-10
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		4e-20
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-10
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		1e-19
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		6e-12
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		1e-19
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		5e-11
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-19
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-10
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-19
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		1e-11
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		3e-19
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		8e-12
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-19
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		8e-12
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-19
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		3e-10
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-19
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		7e-12
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		4e-19
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		3e-12
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-19
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		7e-12
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		5e-19
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		7e-12
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		6e-19
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		5e-10
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		7e-19
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-09
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		8e-19
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		5e-10
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		9e-19
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		9e-10
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		9e-19
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		5e-10
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-18
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-11
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-09
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-18
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-09
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		2e-18
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		5e-11
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		2e-18
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		3e-10
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-18
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-09
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-18
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		4e-12
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		3e-18
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-11
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		3e-18
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		1e-10
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		3e-18
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		8e-11
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		4e-18
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		3e-11
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		6e-18
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-11
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		6e-18
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		9e-09
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		8e-18
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		8e-11
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		9e-18
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		1e-08
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		1e-17
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		5e-10
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-17
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		2e-09
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		2e-17
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		1e-09
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		2e-17
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		5e-10
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-17
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		3e-11
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		3e-17
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		3e-11
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		4e-17
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		6e-10
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		5e-17
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		2e-09
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		6e-17
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		2e-11
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		8e-17
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		4e-10
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		1e-16
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		7e-11
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-16
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-10
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-16
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		4e-12
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		2e-16
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		8e-10
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-16
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		2e-10
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-16
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		1e-09
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		3e-16
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-10
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		3e-16
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		5e-08
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-16
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-10
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		3e-16
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		2e-06
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		3e-16
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		2e-06
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		4e-16
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		5e-09
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		4e-16
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		5e-09
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		6e-16
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		2e-06
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		6e-16
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		3e-06
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		8e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		9e-10
1mh1_A	186	Small G-Protein Length = 186		1e-15
1mh1_A	186	Small G-Protein Length = 186		5e-09
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-15
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		2e-08
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		1e-15
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		5e-09
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		1e-15
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		2e-08
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-15
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		3e-08
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-15
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		2e-08
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-15
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		2e-08
4fmc_F	117	Espg-Rab1 Complex Length = 117		2e-15
4fmc_F	117	Espg-Rab1 Complex Length = 117		1e-10
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-15
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		2e-08
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-15
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		3e-09
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-15
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-06
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		3e-15
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		2e-05
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		3e-15
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		4e-06
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		3e-15
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		2e-08
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		4e-15
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		3e-08
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		5e-15
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		3e-08
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		5e-15
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		7e-09
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		6e-15
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-07
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		1e-14
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		2e-07
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		1e-14
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		3e-08
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-14
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		2e-05
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-14
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		1e-07
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		1e-14
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		3e-08
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		1e-14
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		3e-08
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		1e-14
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		3e-08
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		2e-14
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-07
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		2e-14
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-08
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		3e-14
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		1e-07
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-14
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-05
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-14
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		7e-08
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		3e-14
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		2e-07
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		4e-14
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		1e-08
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		8e-14
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-07
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		8e-14
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		6e-08
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-13
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		1e-06
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		1e-13
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		4e-08
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		2e-13
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		3e-05
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-13
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-13
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		2e-05
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-13
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-13
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		3e-13
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		4e-08
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-13
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-06
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-13
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		3e-13
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		2e-06
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		3e-13
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		2e-06
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		4e-13
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		2e-08
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		5e-13
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		1e-08
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		5e-13
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		2e-08
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		6e-13
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-08
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		6e-13
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-08
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		6e-13
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-08
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		6e-13
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-08
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		6e-13
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		2e-08
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		6e-13
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		2e-08
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		6e-13
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		2e-08
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		7e-13
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-08
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		7e-13
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		2e-08
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		7e-13
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		7e-13
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-08
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		8e-13
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		5e-07
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		8e-13
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		1e-06
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-12
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		1e-08
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-12
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		2e-08
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-12
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		2e-08
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		2e-12
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-08
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		2e-12
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		4e-08
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-12
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		3e-05
2kb0_A	178	Cdc42(T35a) Length = 178		2e-12
2kb0_A	178	Cdc42(T35a) Length = 178		7e-08
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		2e-12
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		3e-05
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-12
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		3e-05
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-12
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		3e-05
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		2e-12
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		7e-08
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		3e-12
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		7e-08
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		3e-12
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		4e-07
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		3e-12
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		9e-08
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		3e-12
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		3e-12
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		5e-05
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-12
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		5e-05
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-12
1s1c_A	183	Crystal Structure Of The Complex Between The Human		7e-05
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-12
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		7e-05
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-12
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		7e-05
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		5e-12
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		5e-05
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		5e-12
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		1e-04
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		5e-12
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		1e-07
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		6e-12
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		1e-04
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		6e-12
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		9e-05
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		6e-12
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-07
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		7e-12
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		1e-04
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		8e-12
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		1e-04
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		8e-12
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		1e-04
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		1e-11
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		3e-05
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-11
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		2e-11
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		3e-04
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		3e-11
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		6e-04
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		4e-11
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-05
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		9e-11
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		1e-06
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		1e-10
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-10
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		6e-05
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		2e-10
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		1e-04
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		3e-10
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		3e-10
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		3e-10
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-10
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-10
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		4e-10
1wq1_R	166	Ras-Rasgap Complex Length = 166		4e-10
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		4e-10
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		4e-10
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		4e-10
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		4e-10
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		4e-10
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		4e-10
4q21_A	189	Molecular Switch For Signal Transduction: Structura		5e-10
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-10
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		5e-10
6q21_A	171	Molecular Switch For Signal Transduction: Structura		5e-10
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		5e-10
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		5e-10
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		5e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		5e-10
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		6e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		6e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		6e-10
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		7e-10
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		3e-07
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		7e-10
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		1e-09
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		4e-07
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-09
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-09
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-09
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		1e-09
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-09
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		1e-09
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-09
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-09
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-09
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-09
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		3e-09
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-09
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		3e-09
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		4e-09
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		4e-09
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		4e-09
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		8e-09
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		2e-08
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		4e-08
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-04
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		4e-08
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		3e-04
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		5e-08
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-04
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		5e-08
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		6e-08
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-08
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		4e-04
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-07
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		4e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		7e-07
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		6e-04
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		8e-07
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		7e-04
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		8e-07
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		7e-04
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-06
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		5e-06
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-05
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		2e-05
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		3e-05
2zej_A	184	Structure Of The Roc Domain From The Parkinson's Di		4e-05
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		8e-05
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		8e-05
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		1e-04
3d6t_B	171	Structure Of The Roc Domain From The Parkinson's Di		1e-04
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		2e-04
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-04
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		2e-04
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		4e-04
2h57_A	190	Crystal Structure Of Human Adp-Ribosylation Factor-		5e-04

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/198 (90%), Positives = 185/198 (93%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 135 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 194
Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 195 DPALAAQYEHDLEVAQTT 212

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/207 (68%), Positives = 149/207 (71%), Gaps = 45/207 (21%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 135 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 194
Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 195 DPALAAQYEHDLEVAQTTALPDEDDDL 221

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score =  380 bits (975), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 180/198 (90%), Positives = 185/198 (93%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 190 DPALAAQYEHDLEVAQTT 207

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score =  280 bits (715), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 142/207 (68%), Positives = 149/207 (71%), Gaps = 45/207 (21%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 180/198 (90%), Positives = 185/198 (93%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 123 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 182
Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 183 DPALAAQYEHDLEVAQTT 200

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score =  272 bits (696), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 139/202 (68%), Positives = 144/202 (71%), Gaps = 45/202 (22%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 123 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 182
Query: 359 DPQWQSRIEQDLKEAQETALPD 380
           DP   ++ E DL+ AQ TALPD
Sbjct: 183 DPALAAQYEHDLEVAQTTALPD 204

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 185/198 (93%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EK+GGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 190 DPALAAQYEHDLEVAQTT 207

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score =  278 bits (712), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 149/207 (71%), Gaps = 45/207 (21%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EK+GGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 184/198 (92%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGL DGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 190 DPALAAQYEHDLEVAQTT 207

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score =  277 bits (709), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 148/207 (71%), Gaps = 45/207 (21%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGL DGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 184/198 (92%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYV TLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 190 DPALAAQYEHDLEVAQTT 207

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  277 bits (709), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 148/207 (71%), Gaps = 45/207 (21%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYV TLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score =  378 bits (970), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 184/198 (92%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP L PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAPPEVVM 189
Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 190 DPALAAQYEHDLEVAQTT 207

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score =  278 bits (710), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 148/207 (71%), Gaps = 45/207 (21%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP L PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAPPEVVM 189
Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score =  377 bits (969), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/197 (90%), Positives = 184/197 (93%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VLVGDGGTGKTTFVKRHLTGE EKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           KFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
Query: 130 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMD 189
           VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV MD
Sbjct: 136 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 195
Query: 190 PQWQSRIEQDLKEAQET 206
           P   ++ E DL+ AQ T
Sbjct: 196 PALAAQYEHDLEVAQTT 212

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score =  277 bits (708), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 141/206 (68%), Positives = 148/206 (71%), Gaps = 45/206 (21%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VLVGDGGTGKTTFVKRHLTGE EKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           KFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                              
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
Query: 315 ---------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMD 359
                          YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV MD
Sbjct: 136 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 195
Query: 360 PQWQSRIEQDLKEAQETALPDDDEDL 385
           P   ++ E DL+ AQ TALPD+D+DL
Sbjct: 196 PALAAQYEHDLEVAQTTALPDEDDDL 221

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score =  377 bits (968), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/198 (90%), Positives = 184/198 (92%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAG 
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 188
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 189 DPQWQSRIEQDLKEAQET 206
           DP   ++ E DL+ AQ T
Sbjct: 190 DPALAAQYEHDLEVAQTT 207

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score =  276 bits (707), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 141/207 (68%), Positives = 148/207 (71%), Gaps = 45/207 (21%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAG 
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL PPEV M
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score =  372 bits (955), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/207 (86%), Positives = 187/207 (90%), Gaps = 1/207 (0%)
Query: 1   MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
           FNVWDTAGQEKFGGLRDGYYIQ QCAII FDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120
Query: 120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
           GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA P
Sbjct: 121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXP 180
Query: 180 ALLPPEVTMDPQWQSRIEQDLKEAQET 206
           AL PPEV  DP   ++ E DL+ AQ T
Sbjct: 181 ALAPPEVVXDPALAAQYEHDLEVAQTT 207

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score =  272 bits (695), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 139/207 (67%), Positives = 146/207 (70%), Gaps = 45/207 (21%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAII FDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA PAL PPEV  
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAPPEVVX 189
Query: 359 DPQWQSRIEQDLKEAQETALPDDDEDL 385
           DP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDDL 216

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score =  346 bits (887), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 167/180 (92%), Positives = 171/180 (95%), Gaps = 1/180 (0%)
Query: 1   MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct: 3   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 62
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
           FNVWDTAG EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct: 63  FNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 122
Query: 120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
           GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct: 123 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score =  230 bits (587), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 119/170 (70%), Positives = 121/170 (71%), Gaps = 45/170 (26%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           KFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                              
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 132
Query: 315 ---------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 349
                          YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct: 133 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score =  345 bits (884), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 164/171 (95%), Positives = 166/171 (97%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAG 
Sbjct: 6   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 129 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 179
           KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct: 126 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score =  230 bits (586), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 119/171 (69%), Positives = 121/171 (70%), Gaps = 45/171 (26%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAG 
Sbjct: 6   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 349
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP
Sbjct: 126 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score =  344 bits (882), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 161/190 (84%), Positives = 174/190 (91%)
Query: 2   AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 61
           AA  ++P+FK VLVGDGGTGKTTFVKRHLTGEFEKKY+AT+GVEVHPL F+TN G I+F+
Sbjct: 5   AANGEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFD 64
Query: 62  VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 121
           VWDTAG EKFGGLRDGYYI  QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN
Sbjct: 65  VWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 124
Query: 122 KVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPAL 181
           KVD+K+RKVKAK+I FHRKKNLQYYDISAKSNYNFEKPFLWLARKL G+P LEFVA PAL
Sbjct: 125 KVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPAL 184
Query: 182 LPPEVTMDPQ 191
            PPEV +D Q
Sbjct: 185 APPEVQVDEQ 194

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score =  234 bits (596), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 126/208 (60%), Positives = 140/208 (67%), Gaps = 46/208 (22%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           +FK VLVGDGGTGKTTFVKRHLTGEFEKKY+AT+GVEVHPL F+TN G I+F+VWDTAG 
Sbjct: 12  TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 71
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYI  QCAIIMFDVTSRITYKN                             
Sbjct: 72  EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKER 131
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
                           YYDISAKSNYNFEKPFLWLARKL G+P LEFVA PAL PPEV +
Sbjct: 132 KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQV 191
Query: 359 DPQWQSRIEQDLKEAQETALPD-DDEDL 385
           D Q   + +Q++++A    LPD DD DL
Sbjct: 192 DEQLMQQYQQEMEQATALPLPDEDDADL 219

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score =  340 bits (873), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 164/176 (93%), Positives = 168/176 (95%), Gaps = 1/176 (0%)
Query: 1   MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIK 60
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
           FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120
Query: 120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 175
           GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF
Sbjct: 121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 176

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score =  225 bits (573), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 116/167 (69%), Positives = 118/167 (70%), Gaps = 45/167 (26%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEF 345
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEF
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 176

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score =  340 bits (871), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 164/177 (92%), Positives = 168/177 (94%), Gaps = 1/177 (0%)
Query: 1   MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           MAA+ +    FK VLVGDGGTGKTTFVKRHLTGEFEKKYV TLGVEVHPLVFHTNRG I+
Sbjct: 1   MAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIK 60
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLC 119
           FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLC
Sbjct: 61  FNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLC 120
Query: 120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 176
           GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV
Sbjct: 121 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 177

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score =  224 bits (571), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 116/168 (69%), Positives = 118/168 (70%), Gaps = 45/168 (26%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VLVGDGGTGKTTFVKRHLTGEFEKKYV TLGVEVHPLVFHTNRG I+FNVWDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                             
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 346
                           YYDISAKSNYNFEKPFLWLARKLIGDPNLEFV
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 177

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score =  320 bits (820), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 149/171 (87%), Positives = 161/171 (94%)
Query: 6   DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
           ++P+FK VLVGDGGTGKTTFVKRHLTGEFEKKY+AT+GVEVHPL F+TN G I+F+VWDT
Sbjct: 1   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDI 125
           AG EKFGGLRDGYYI  QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD+
Sbjct: 61  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 120
Query: 126 KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 176
           K+RKVKAK+I FHRKKNLQYYDISAKSNYNFEKPFLWLARKL G+P LEFV
Sbjct: 121 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 171

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 114/168 (67%), Gaps = 45/168 (26%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           +FK VLVGDGGTGKTTFVKRHLTGEFEKKY+AT+GVEVHPL F+TN G I+F+VWDTAG 
Sbjct: 4   TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 63
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYI  QCAIIMFDVTSRITYKN                             
Sbjct: 64  EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKER 123
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 346
                           YYDISAKSNYNFEKPFLWLARKL G+P LEFV
Sbjct: 124 KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 171

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score =  320 bits (819), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 149/171 (87%), Positives = 161/171 (94%)
Query: 6   DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
           ++P+FK VLVGDGGTGKTTFVKRHLTGEFEKKY+AT+GVEVHPL F+TN G I+F+VWDT
Sbjct: 2   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 61
Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDI 125
           AG EKFGGLRDGYYI  QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD+
Sbjct: 62  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 121
Query: 126 KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 176
           K+RKVKAK+I FHRKKNLQYYDISAKSNYNFEKPFLWLARKL G+P LEFV
Sbjct: 122 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 172

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score =  205 bits (522), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 114/168 (67%), Gaps = 45/168 (26%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           +FK VLVGDGGTGKTTFVKRHLTGEFEKKY+AT+GVEVHPL F+TN G I+F+VWDTAG 
Sbjct: 5   TFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGL 64
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EKFGGLRDGYYI  QCAIIMFDVTSRITYKN                             
Sbjct: 65  EKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKER 124
Query: 315 ----------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 346
                           YYDISAKSNYNFEKPFLWLARKL G+P LEFV
Sbjct: 125 KVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 172

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score =  174 bits (441), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 92/185 (49%), Positives = 122/185 (65%), Gaps = 4/185 (2%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAG 67
           ++K  L+GDGG GKTT++ R L G FEK Y AT+G   HP+ F  ++G  I+FNVWDTAG
Sbjct: 11  TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIK 126
           QEK   L+D YYI    AI+ FDVTSRIT +N+  W ++   V  N  PIV+C NK+DIK
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 127 DRKVKAKSIVFH--RKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPP 184
           +R+  +K +V    + KN +Y++ISAK+ +NF  PFL LAR   G P+L FV+   L P 
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPT 190
Query: 185 EVTMD 189
           EV  D
Sbjct: 191 EVNYD 195

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score =  124 bits (311), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 94/185 (50%), Gaps = 49/185 (26%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAG 282
           ++K  L+GDGG GKTT++ R L G FEK Y AT+G   HP+ F  ++G  I+FNVWDTAG
Sbjct: 11  TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------- 314
           QEK   L+D YYI    AI+ FDVTSRIT +N                            
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 315 --------------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPP 354
                               Y++ISAK+ +NF  PFL LAR   G P+L FV+   L P 
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPT 190
Query: 355 EVTMD 359
           EV  D
Sbjct: 191 EVNYD 195

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 91/165 (55%), Gaps = 3/165 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+ G GKT  V+R   G F     AT+GV+        N   ++  +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDIKDR 128
           +F  +   YY      I+ +D+T   +++ +P W R++ +   N +  VL GNK+D+ +R
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 171
           +   + ++  F   +++ Y + SAK + N EK FL LA +LI + 
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 47/89 (52%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+ G GKT  V+R   G F     AT+GV+        N   ++  +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  +   YY      I+ +D+T   +++
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFR 115

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-----RVCENIPIVLCGNKVD 124
           +F  L   +Y    C +++FDVT+  T+K + +W  + +     R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 125 IKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +++R+V  K      + K N+ Y++ SAK   N E+ F  +AR  +
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  L   +Y    C +++FDVT+  T+K
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFK 97

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 92/166 (55%), Gaps = 7/166 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-----RVCENIPIVLCGNKVD 124
           +F  L   +Y    C +++FDVT+  T+K + +W  + +     R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 125 IKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +++R+V  K      + K N+ Y++ SAK   N E+ F  +AR  +
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  L   +Y    C +++FDVT+  T+K
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFK 97

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-----RVCENIPIVLCGNKVD 124
           +F  L   +Y    C +++FDVT+  T+K + +W  + +     R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 125 IKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            ++R+V  K      + K N+ Y++ SAK   N E+ F  +AR  +
Sbjct: 129 FENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  L   +Y    C +++FDVT+  T+K
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFK 97

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 90/167 (53%), Gaps = 7/167 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLCGNKVD 124
           +F  LR  +Y    C ++ F V    +++N+ NW ++      V+  E+ P V+ GNK D
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131
Query: 125 IKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIG 169
           IK+R+V  +      K N    Y++ SAK + N    F    R+++ 
Sbjct: 132 IKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRILA 178

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLA 334
           +F  LR  +Y    C ++ F V    +++N          N++K F++ A
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL--------SNWKKEFIYYA 113

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 7/166 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAG E
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-----RVCENIPIVLCGNKVD 124
           +F  L   +Y    C +++FDVT+  T+K + +W  + +     R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 125 IKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +++R+V  K      + K N+ Y++ SAK   N E+ F  +AR  +
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 50/89 (56%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAG E
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  L   +Y    C +++FDVT+  T+K
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFK 97

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLCGNKVD 124
           +F  LR  +Y    C ++ F V    +++N+ NW ++      V+  E+ P V+ GNK+D
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 125 IKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIG 169
           I +R+V  +      + N    Y++ SAK   N    F    R+++ 
Sbjct: 128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 174

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLA 334
           +F  LR  +Y    C ++ F V    +++N          N++K F++ A
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL--------SNWKKEFIYYA 109

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 54/162 (33%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI-KD 127
           +F  +   YY     A++++D+TSR TY  + NW  D  +   +NI I+LCGNK D+  D
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130
Query: 128 RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R+V   ++  F ++  L + + SA +  N E+ F+  ARK++
Sbjct: 131 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 172

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY     A++++D+TSR TY
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETY 98

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLCGNKVD 124
           +F  LR  +Y    C ++ F V    +++N+ NW ++      V+  E+ P V+ GNK+D
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129
Query: 125 IKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIG 169
           I +R+V  +      + N    Y++ SAK   N    F    R+++ 
Sbjct: 130 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA 176

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 8/110 (7%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLA 334
           +F  LR  +Y    C ++ F V    +++N          N++K F++ A
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNL--------SNWKKEFIYYA 111

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 91/170 (53%), Gaps = 18/170 (10%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VLVGD   GKT  V+R  TG F ++  +T+GV+            ++  +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           +F  +   YY     AI+ +D+T R ++ +VP+W  D+ +    NI  +L GNK D+ + 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
Query: 129 K----VKAKSIVFHRKKNLQYYDI------SAKSNYNFEKPFLWLARKLI 168
           +     +A+S+  H       YDI      SAK + N E+ FL +A +LI
Sbjct: 150 REVSLAEAQSLAEH-------YDILCAIETSAKDSSNVEEAFLRVATELI 192

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VLVGD   GKT  V+R  TG F ++  +T+GV+            ++  +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY     AI+ +D+T R ++
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSF 117

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAGQE
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI-KD 127
           +F  +   YY     A++++D+TSR TY  + NW  D  +   +NI I+LCGNK D+  D
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 131
Query: 128 RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R+V   ++  F ++  L + + SA +  + E+ F+  ARK++
Sbjct: 132 REVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 173

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 52/88 (59%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAGQE
Sbjct: 12  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 71
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY     A++++D+TSR TY
Sbjct: 72  RFRSVTRSYYRGAAGALLVYDITSRETY 99

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 89/167 (53%), Gaps = 7/167 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 8   LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLCGNKVD 124
           +F  LR  +Y    C ++ F V  R +++N+ NW ++      V+  E+ P V+ GNKVD
Sbjct: 68  RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 125 IKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIG 169
            +DR+V  +       +N    Y + SAK + N    F    R+++ 
Sbjct: 128 KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQVLA 174

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 63/117 (53%), Gaps = 10/117 (8%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 8   LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDP 341
           +F  LR  +Y    C ++ F V  R +++N          N++K F++ A   + DP
Sbjct: 68  RFKSLRTPFYRGADCCLLTFSVDDRQSFENL--------GNWQKEFIYYAD--VKDP 114

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  T+    NW ++L R    NI I L GNK D+  +
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 129 KVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     ++  +    +L + + SAK+  N  + F+ +A+KL
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  T+
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTF 91

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 128 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESF 95

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESF 94

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 3/170 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 176
           KV   +    F     + + + SAK+  N E+ F+ +A ++     LE +
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGLEVL 179

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + +Y N
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYAN 99

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 49/160 (30%), Positives = 84/160 (52%), Gaps = 2/160 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + K V+VG+G  GK++ ++R+  G F K Y  T+GV+        N   +R  +WDTAGQ
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           E+F  +   YY   Q  +++F  T R +++ + +W   +V    +IP  L  NK+D+ D 
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166
                 ++    ++  L++Y  S K + N  + F +LA K
Sbjct: 125 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + K V+VG+G  GK++ ++R+  G F K Y  T+GV+        N   +R  +WDTAGQ
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           E+F  +   YY   Q  +++F  T R +++
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFE 94

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA + D   FK +++GD G GK++ + R     F   Y+ T+GV+        N   ++ 
Sbjct: 2   MARDYDHL-FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKL 60
Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCG 120
            +WDTAGQE+F  +   YY      I+++DVTS  ++ NV  W  ++ + C+++  +L G
Sbjct: 61  QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVG 120
Query: 121 NKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           NK D  +RKV     +  F  +  +Q ++ SAK N N E+ F
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 4/118 (3%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK++ + R     F   Y+ T+GV+        N   ++  +WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPN 342
           +F  +   YY      I+++DVTS  ++ N      + N N +     + R L+G+ N
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDD----VCRILVGNKN 123

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G  GTGK+  + + +  +F++    T+GVE    V +     ++  +WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK-D 127
           +F  +   YY     A++++D+TSR TY ++  W  D   +   NI ++LCGNK D+  +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 128 RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R+V   ++  F ++  L + + SA +  N E+ FL  AR ++
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL 187

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 53/90 (58%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G  GTGK+  + + +  +F++    T+GVE    V +     ++  +WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY     A++++D+TSR TY +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNS 115

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 98.6 bits (244), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + +Y N
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYAN 99

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 97.8 bits (242), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 93/165 (56%), Gaps = 7/165 (4%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN--VWDTA 66
           SFK VL+G+G  GKT+ V R+   +F  K++ TLG     L    N G  R N  +WDTA
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASF--LTKKLNIGGKRVNLAIWDTA 63
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDI 125
           GQE+F  L   YY     AI+++D+T   +++ V NW ++L ++  N I + + GNK+D+
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123
Query: 126 -KDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            K+R V  +    +      ++Y  SAK N   E+ FL L +++I
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN--VWDTA 281
           SFK VL+G+G  GKT+ V R+   +F  K++ TLG     L    N G  R N  +WDTA
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASF--LTKKLNIGGKRVNLAIWDTA 63
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           GQE+F  L   YY     AI+++D+T   +++
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQ 95

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 97.8 bits (242), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESF 94

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 97.8 bits (242), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 83/154 (53%), Gaps = 3/154 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L    + NI I+L GNK D++  
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K NL + + SA  + N E+ F
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 159

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYEN 95

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 97.8 bits (242), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESF 94

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESF 94

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 91/160 (56%), Gaps = 3/160 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K VL+GD G GK++ V R +  +F +   +T+G          N   ++F +WDTAGQE+
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKD-R 128
           +  L   YY     AII+FDVT++ +++    W ++L  +   N+ + L GNK D+ D R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 129 KVKAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKL 167
           KV A+    + ++N L + + SAK+  N ++ F  +AR+L
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 51/88 (57%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K VL+GD G GK++ V R +  +F +   +T+G          N   ++F +WDTAGQE+
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +  L   YY     AII+FDVT++ +++
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFE 101

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESF 94

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F  +A+KL
Sbjct: 128 RAVDFQEAQS--YADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESF 95

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESF 94

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/162 (32%), Positives = 93/162 (57%), Gaps = 3/162 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAG E
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI-KD 127
           +F  +   YY     A++++D+TSR TY  + NW  D  +   +NI I+LCGNK D+  D
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 128
Query: 128 RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R+V   ++  F ++  L + + SA +  + E+ F+  ARK++
Sbjct: 129 REVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKIL 170

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 51/88 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAG E
Sbjct: 9   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGLE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY     A++++D+TSR TY
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETY 96

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 106

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T++ T+     W ++L R    +I I L GNK D+ ++
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++    ++  +    +L + + SAK+  N    FL +A+KL
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 52/88 (59%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T++ T+
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETF 96

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 96

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  T+    NW ++L R    NI I L GNK D+  +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 129 KVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     ++  +    +L + + SAK+  N  + F+ +A+KL
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  T+
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTF 93

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+           +   ++F +WDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  T+    NW ++L R    NI I L GNK D+  +
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 129 KVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     ++  +    +L + + SAK+  N  + F+ +A+KL
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 50/88 (56%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+           +   ++F +WDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  T+
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTF 93

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 96

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 3/170 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           + + K +++G+ G GK++ + R     F+ +  AT+GV+        +    +  +WDTA
Sbjct: 13  LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 72
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV--LCGNKVD 124
           GQE+F  L   YY   Q  I+++DVT R T+  + NW  +L   C    IV  L GNK+D
Sbjct: 73  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID 132
Query: 125 IKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 173
            ++R+V + + + F RK +  + + SAK+    +  F  L  K+I  P L
Sbjct: 133 KENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 49/89 (55%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + K +++G+ G GK++ + R     F+ +  AT+GV+        +    +  +WDTAGQ
Sbjct: 15  TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           E+F  L   YY   Q  I+++DVT R T+
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTF 103

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 146 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 115

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ ++
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 126 RAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 50/88 (56%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  L   YY   Q AI+++D+T+  ++
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESF 93

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L    + NI I+L GNK D++  
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K  L + + SA  + N E  F
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 71.2 bits (173), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 119

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK   + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK   + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 106

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L      NI I+L GNK D++  
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K  L + + SA  + N E  F
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 110

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 7/165 (4%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN--VWDTA 66
           SFK VL+G+G  GKT+ V R+   +F  K++ TL  +   L    N G  R N  +WDTA
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--QASFLTKKLNIGGKRVNLAIWDTA 77
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDI 125
           GQE+F  L   YY     AI+++D+T   +++ V NW ++L ++  N I + + GNK+D+
Sbjct: 78  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 137
Query: 126 -KDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            K+R V  +    +      ++Y  SAK N   E+ FL L +++I
Sbjct: 138 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 182

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN--VWDTA 281
           SFK VL+G+G  GKT+ V R+   +F  K++ TL  +   L    N G  R N  +WDTA
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--QASFLTKKLNIGGKRVNLAIWDTA 77
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           GQE+F  L   YY     AI+++D+T   +++
Sbjct: 78  GQERFHALGPIYYRDSNGAILVYDITDEDSFQ 109

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 59/165 (35%), Positives = 93/165 (56%), Gaps = 7/165 (4%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN--VWDTA 66
           SFK VL+G+G  GKT+ V R+   +F  K++ TL  +   L    N G  R N  +WDTA
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--QASFLTKKLNIGGKRVNLAIWDTA 63
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-IPIVLCGNKVDI 125
           GQE+F  L   YY     AI+++D+T   +++ V NW ++L ++  N I + + GNK+D+
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDL 123
Query: 126 -KDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            K+R V  +    +      ++Y  SAK N   E+ FL L +++I
Sbjct: 124 EKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN--VWDTA 281
           SFK VL+G+G  GKT+ V R+   +F  K++ TL  +   L    N G  R N  +WDTA
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTL--QASFLTKKLNIGGKRVNLAIWDTA 63
Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           GQE+F  L   YY     AI+++D+T   +++
Sbjct: 64  GQERFHALGPIYYRDSNGAILVYDITDEDSFQ 95

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 83/158 (52%), Gaps = 3/158 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     +   Y++T+GV+            ++  +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      II++DVT R ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164
           +V    +         +++ + SAK+ YN E+ F  +A
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMA 167

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     +   Y++T+GV+            ++  +WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      II++DVT R ++ N
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDN 99

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 86/160 (53%), Gaps = 3/160 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE+
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRK 129
           F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +K
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 130 VKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           V   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 121 VVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 49/89 (55%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE+
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           F  +   YY      I+++DVT + ++ N
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNN 89

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GKT  + R     F   +++T+G++        +   I+  +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      ++++D+T+  ++ N+ NW R++      ++  ++ GNK D+ D+
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +   K +         +++ + SAK+N N E  F  LAR +
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GKT  + R     F   +++T+G++        +   I+  +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      ++++D+T+  ++ N
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDN 98

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F   A ++
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 123

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L    + NI I+L GNK D++  
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K  L + + SA  + N E  F
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 119

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L G K D+  +
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           KV   +    F     + + + SAK+  N E+ F+ +A ++
Sbjct: 129 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 98

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GKT  + R     F   +++T+G++        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      ++++D+T+  ++ N+ NW R++      ++  ++ GNK D+ D+
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +   K +         +++ + SAK+N N E  F  LAR +
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GKT  + R     F   +++T+G++        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      ++++D+T+  ++ N
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDN 96

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L    + NI I+L GNK D++  
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K  L + + SA  + N E  F
Sbjct: 129 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 98

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           +K V +G+   GKT+ + R     F+  Y +T+G++      + + G +R  +WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD- 127
           +F  L   Y      AI+++D+T+R +++N   W +D++    +++ I L GNK D+ D 
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDL 121
Query: 128 RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           RKV   +     ++ N  +++ SAK+ +N +  F   A KL
Sbjct: 122 RKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 52/90 (57%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V +G+   GKT+ + R     F+  Y +T+G++      + + G +R  +WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  L   Y      AI+++D+T+R +++N
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFEN 91

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L    + NI I L GNK D++  
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K  L + + SA  + N E  F
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 101

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L    + NI I L GNK D++  
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +     ++  F  K  L + + SA  + N E  F
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 95

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++  +WDTAGQE
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI-VLCGNKVDIKDR 128
           +F  +   YY      II++DVT + ++  V  W +++ R   +  + +L GNK D+KD+
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 141
Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +V    +   F     + + + SA  + N E  FL +AR++
Sbjct: 142 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++  +WDTAGQE
Sbjct: 22  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 81
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY      II++DVT + ++
Sbjct: 82  RFRTITSSYYRGSHGIIIVYDVTDQESF 109

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 91.3 bits (225), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 14/163 (8%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 60
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVL 118
            +WDTAG E+F  L   ++      ++MFD+TS+ ++ NV NW   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 119 CGNKVDIKD-RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKP 159
            GNK D+ D R+V  +       K  + Y++ SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 275
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAG E+F  L   ++      ++MFD+TS+ ++ N
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN 111

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           M +E D   FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++ 
Sbjct: 1   MNSEYDYL-FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKL 59
Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI-VLC 119
            +WDTAGQE+F  +   YY      II++DVT + ++  V  W +++ R   +  + +L 
Sbjct: 60  QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV 119
Query: 120 GNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           GNK D+KD++V    +   F     + + + SA  + N E  FL +AR++
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++  +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY      II++DVT + ++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESF 96

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 85/162 (52%), Gaps = 14/162 (8%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLVFHTNRG---------AIRF 60
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +G          +  
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVL 118
            +WDTAGQE+F  L   ++      ++MFD+TS+ ++ NV NW   L     CEN  IVL
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 146
Query: 119 CGNKVDIKD-RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEK 158
            GNK D+ D R+V  +       K  + Y++ SA +  N EK
Sbjct: 147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLVFHTNRG---------AIRF 275
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +G          +  
Sbjct: 27  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHL 86
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAGQE+F  L   ++      ++MFD+TS+ ++ N
Sbjct: 87  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN 125

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 89/170 (52%), Gaps = 4/170 (2%)
Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           M +E D   FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++ 
Sbjct: 1   MNSEYDYL-FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKL 59
Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI-VLC 119
            +WDTAGQE+F  +   YY      II++DVT + ++  V  W +++ R   +  + +L 
Sbjct: 60  QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV 119
Query: 120 GNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           GNK D+KD++V    +   F     + + + SA  + N E  FL +AR++
Sbjct: 120 GNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++  +WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  +   YY      II++DVT + ++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESF 96

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 88/167 (52%), Gaps = 6/167 (3%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           + S K VL+G+   GK++ V R ++ +F +    T+G          N   ++F +WDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI 125
           GQE+F  L   YY   Q A++++DVT   ++    +W ++L  +  ++I I L GNK+D 
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120
Query: 126 ----KDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                +RKV + +      +K L +++ SAK+  N    FL +  K+
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 47/84 (55%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           S K VL+G+   GK++ V R ++ +F +    T+G          N   ++F +WDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVT 307
           E+F  L   YY   Q A++++DVT
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVT 86

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 86/163 (52%), Gaps = 14/163 (8%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 60
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVL 118
            +WDTAG E+F  L   ++      ++MFD+TS+ ++ NV NW   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 119 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP 159
            GNK D+ D++   + ++     K  + Y++ SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 275
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAG E+F  L   ++      ++MFD+TS+ ++ N
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN 111

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +   I+  +WDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
            F  +   YY     A++++D+T R T+ ++  W  D  +    N+ I+L GNK D++ R
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +   K +   F R+  L + + SAK+  N E+ F+  A+++
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 49/90 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +     F+  +  T+GVE    +   +   I+  +WDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            F  +   YY     A++++D+T R T+ +
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNH 100

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/172 (29%), Positives = 87/172 (50%), Gaps = 15/172 (8%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +  FK V +G+   GKT+ + R +   F+  Y AT+G++      +     IR  +WDTA
Sbjct: 4   LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 63
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI 125
           GQE+F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+
Sbjct: 64  GQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 126 KDRKV--------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
            D++         KAK +      N+ + + SAK+ YN ++ F  +A  L G
Sbjct: 124 ADKRQVSIEEGERKAKEL------NVMFIETSAKAGYNVKQLFRRVAAALPG 169

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 46/84 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     IR  +WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITN 90

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135
Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     ++  F  +  L + + SAK+  N E  FL  A+K+
Sbjct: 136 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLE 344
           +F  +   YY     A++++D+T R            S YN    +L  AR L  +PN  
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRR------------STYNHLSSWLTDARNLT-NPNTV 122
Query: 345 FVAMPALLPPEVTMDPQWQSRIEQDLKEAQETAL 378
            +    L+  +  ++ Q     E+  + A+E  L
Sbjct: 123 II----LIGNKADLEAQRDVTYEEAKQFAEENGL 152

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +     F+  +  T+GVE    + + +   I+  +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D++ R
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +   + +   F R+  L + + SAK+  N E+ F+  A+++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 50/90 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +     F+  +  T+GVE    + + +   I+  +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            F  +   YY     A++++D+T R T+ +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNH 111

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 93/196 (47%), Gaps = 15/196 (7%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF     +T+GVE            I+  +WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY     A+I++D++   +Y+N  +W  +L     +N+ + L GNK D+   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL----------IGDPNLEFV 176
           +     +S  F ++  L + + SA ++ N +K F  L   +          +GD +    
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDLGDSSANGN 193
Query: 177 AMPALLP--PEVTMDP 190
           A  A  P  P +++ P
Sbjct: 194 ANGASAPNGPTISLTP 209

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 48/90 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF     +T+GVE            I+  +WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A+I++D++   +Y+N
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYEN 103

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 83/155 (53%), Gaps = 4/155 (2%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH-TNRGAIRFNVWDTAGQ 68
           FK VL+GD G GK+  + R    EF  +  +T+GVE         N   I+  +WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKD 127
           E++  +   YY     A++++D+T + +++N+  W ++L    + NI I+L GNK D+K 
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 128 RKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
            +V     +  + +K+ L + + SA    N E  F
Sbjct: 128 LRVINDNDATQYAKKEKLAFIETSALEATNVELAF 162

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFH-TNRGAIRFNVWDTAGQ 283
           FK VL+GD G GK+  + R    EF  +  +T+GVE         N   I+  +WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E++  +   YY     A++++D+T + +++N
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFEN 98

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 3/166 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +  FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTA
Sbjct: 12  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 71
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI 125
           GQE+F  L   Y      A++++D+T+  ++     W  D+      ++ I+L GNK D+
Sbjct: 72  GQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDL 131
Query: 126 KDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKLIG 169
            D++  +      + K  N+ + + SAK+ YN ++ F  +A  L G
Sbjct: 132 SDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITN 98

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 3/162 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 128
           +F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+ D+
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 129 KVKAKSIVFHRKKNLQ--YYDISAKSNYNFEKPFLWLARKLI 168
           +         R K L   + + SAK+ YN ++ F  +A  L+
Sbjct: 123 RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALL 164

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITN 86

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 85/156 (54%), Gaps = 7/156 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY      I+M+D+T+  ++  V +W   +     +N  ++L GNK D++D 
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +V    + + +  H     ++++ SAK N N ++ F
Sbjct: 126 RVVSSERGRQLADHL--GFEFFEASAKDNINVKQTF 159

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 54/97 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAK 321
           ++  +   YY      I+M+D+T+  ++    D S +
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQ 102

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG 67
           +FK +LVGD G GKT  + R   G F    +++T+G++    V   +   ++  +WDTAG
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIK 126
           QE+F  +   YY      ++++DVT++ ++ N+  W  ++    + ++ ++L GNKVD  
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 127 DRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
             +V  +       ++  L + + SAK+  N +  F  +A++L
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG 282
           +FK +LVGD G GKT  + R   G F    +++T+G++    V   +   ++  +WDTAG
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           QE+F  +   YY      ++++DVT++ ++ N
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDN 101

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 14/163 (8%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 60
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVL 118
            +WDTAG E+F  L   ++      ++ FD+TS+ ++ NV NW   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 119 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP 159
            GNK D+ D++   + ++     K  + Y++ SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 275
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAG E+F  L   ++      ++ FD+TS+ ++ N
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLN 111

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 85/167 (50%), Gaps = 15/167 (8%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 128
           +F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+ D+
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 129 KV--------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +         KAK +      N+ + + SAK+ YN ++ F  +A  L
Sbjct: 122 RQVSIEEGERKAKEL------NVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 46/84 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITN 85

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 87.8 bits (216), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 54/163 (33%), Positives = 84/163 (51%), Gaps = 14/163 (8%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 60
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVL 118
            +WDTAG E+F  L   ++      ++ FD+TS+ ++ NV NW   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 119 CGNKVDIKD-RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKP 159
            GNK D+ D R+V  +       K  + Y++ SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 10/99 (10%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV-HPLVFHTNRGA---------IRF 275
           K + +GD G GKTTF+ R+   +F  K++ T+G++     V +  +GA         +  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAG E+F  L   ++      ++ FD+TS+ ++ N
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLN 111

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 99/208 (47%), Gaps = 29/208 (13%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +  FK V +G+   GKT+ + R +   F+  Y AT+G++      +     IR  +WDTA
Sbjct: 11  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTA 70
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI 125
           G E+F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+
Sbjct: 71  GLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 130
Query: 126 KDRKV--------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 177
            D++         KAK +      N+ + + SAK+ YN ++ F  +A            A
Sbjct: 131 ADKRQVSIEEGERKAKEL------NVMFIETSAKAGYNVKQLFRRVA-----------AA 173
Query: 178 MPALLPPEVTMDPQWQSRIEQDLKEAQE 205
           +P +   E T D   +  I+  L++ QE
Sbjct: 174 LPGM---ESTQDRSREDMIDIKLEKPQE 198

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 45/84 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     IR  +WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITN 97

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQ 
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDIKDR 128
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ +
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 150
Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     ++  F  +  L + + SAK+  N E  FL  A+K+
Sbjct: 151 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQ 
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLE 344
           +F  +   YY     A++++D+T R            S YN    +L  AR L  +PN  
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRR------------STYNHLSSWLTDARNLT-NPNTV 137
Query: 345 FVAMPALLPPEVTMDPQWQSRIEQDLKEAQETAL 378
            +    L+  +  ++ Q     E+  + A+E  L
Sbjct: 138 II----LIGNKADLEAQRDVTYEEAKQFAEENGL 167

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 98/202 (48%), Gaps = 17/202 (8%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +  FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTA
Sbjct: 14  LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 73
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI 125
           G E+F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+
Sbjct: 74  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 133
Query: 126 KDRKVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLP 183
            D++  +      + K  N+ + + SAK+ YN ++ F  +A            A+P +  
Sbjct: 134 ADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA-----------AALPGM-- 180
Query: 184 PEVTMDPQWQSRIEQDLKEAQE 205
            E T D   +  I+  L++ QE
Sbjct: 181 -ESTQDRSREDMIDIKLEKPQE 201

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITN 100

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 15/172 (8%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +  FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTA
Sbjct: 4   LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA 63
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDI 125
           G E+F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+
Sbjct: 64  GLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDL 123
Query: 126 KDRKV--------KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
            D++         KAK +      N+ + + SAK+ YN ++ F  +A  L G
Sbjct: 124 ADKRQVSIEEGERKAKEL------NVMFIETSAKAGYNVKQLFRRVAAALPG 169

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 45/84 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTS 308
           +F  L   Y      A++++D+T+
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITN 90

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+ G GKT  + R    EF      T+GVE           A++  +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDI-KD 127
           ++  +   YY     A+++FD+T   TY  V  W ++L    E  I ++L GNK D+ + 
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 128 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           R+V   ++ +F     L + + SA  + N E  F
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAF 179

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+ G GKT  + R    EF      T+GVE           A++  +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  +   YY     A+++FD+T   TY
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTY 113

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 3/154 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+ G GKT  + R    EF      T+GVE           A++  +WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-NIPIVLCGNKVDI-KD 127
           ++  +   YY     A+++FD+T   TY  V  W ++L    E  I ++L GNK D+ + 
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 128 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           R+V   ++ +F     L + + SA  + N E  F
Sbjct: 131 REVPTEEARMFAENNGLLFLETSALDSTNVELAF 164

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+ G GKT  + R    EF      T+GVE           A++  +WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           ++  +   YY     A+++FD+T   TY
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTY 98

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 84/169 (49%), Gaps = 11/169 (6%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           ++K VL GD   GK++F+ R    EF +   ATLGV+        +       +WDTAGQ
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 126
           E+F  +   Y+ +    ++++DVT   ++ N+  W  D++     E +PI+L GNK DI+
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW-VDMIEDAAHETVPIMLVGNKADIR 146
Query: 127 DRKVK--AKSIVFHRKKNLQ------YYDISAKSNYNFEKPFLWLARKL 167
           D       K +  H  + L       + + SAK   N  +  L LAR++
Sbjct: 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           ++K VL GD   GK++F+ R    EF +   ATLGV+        +       +WDTAGQ
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E+F  +   Y+ +    ++++DVT   ++ N
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLN 118

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 85.5 bits (210), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 91/163 (55%), Gaps = 4/163 (2%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G  G GKT+ ++R     F +   +T+GV+            IR  +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIK-D 127
           +F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + D
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146
Query: 128 RKV-KAKSIVFHRK-KNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R++ + +   F ++   +++ + SAK N+N ++ FL L   ++
Sbjct: 147 REITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 48/90 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G  G GKT+ ++R     F +   +T+GV+            IR  +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY   +  I+++D+T + T+ +
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDD 116

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 12/170 (7%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 67
            K +++GD G GKT+ + R++  ++ ++Y AT+G +     +    ++ A    VWDTAG
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT-MQVWDTAG 67
Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLCGNK 122
           QE+F  L   +Y    C ++++DVT+  +++N+ +W  +      V   E  P V+ GNK
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 123 VDIKDRK--VKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKLI 168
           +D ++ K  V  KS     K   ++  +  SAK+  N +  F  +AR  +
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 70/131 (53%), Gaps = 9/131 (6%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 282
            K +++GD G GKT+ + R++  ++ ++Y AT+G +     +    ++ A    VWDTAG
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVAT-MQVWDTAG 67
Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNY------YDISAKSNYNFEKPFLWLARK 336
           QE+F  L   +Y    C ++++DVT+  +++N       + + A  N     PF+ L  K
Sbjct: 68  QERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNK 127
Query: 337 LIGDPNLEFVA 347
           +  + + + V+
Sbjct: 128 IDAEESKKIVS 138

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + +   ++  +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY      I+M+D+T+  ++  V +W   +     +N  ++L GNK D+++ 
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143
Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +V    K  +   +    +++ SAK N +  + F
Sbjct: 144 RVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 52/93 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + +   ++  +WDTAGQE
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQE 83
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           ++  +   YY      I+M+D+T+  ++    D
Sbjct: 84  RYRTITTAYYRGAMGFILMYDITNEESFNAVQD 116

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++D+T   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123
Query: 129 KVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
            V A +     ++  + + + SAK++ N  + F  LA+
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++D+T   T+ N
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTN 93

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 127
Query: 129 KVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
            V A +     ++  + + + SAK++ N  + F  LA+
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 165

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT   T+ N
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTN 97

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 84.3 bits (207), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/164 (30%), Positives = 85/164 (51%), Gaps = 11/164 (6%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R  T EF  +  +T+GVE            I+  +WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY     A+I++D++   +Y+N  +W  +L     +N+ + L GNK D+   
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +     +AK+  F  +  + + + SA ++ N +K F    R+LI
Sbjct: 131 RAVPTDEAKN--FAMENQMLFTETSALNSDNVDKAF----RELI 168

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 49/90 (54%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R  T EF  +  +T+GVE            I+  +WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A+I++D++   +Y+N
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYEN 100

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 83/154 (53%), Gaps = 3/154 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+G+   GKT+F+ R+    F   +V+T+G++      + +   I+  +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY      ++M+D+ ++ ++  V +W   +     +N  ++L GNK D++D 
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 129 KVKAKSIVFHRKKNL--QYYDISAKSNYNFEKPF 160
           +V           +L  ++++ SAK N N ++ F
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 52/93 (55%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+G+   GKT+F+ R+    F   +V+T+G++      + +   I+  +WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           ++  +   YY      ++M+D+ ++ ++    D
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQD 115

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/158 (27%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 140
Query: 129 KVKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
            V A +     ++  + + + SAK++ N  + F  LA+
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 48/90 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT   T+ N
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTN 110

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 82/156 (52%), Gaps = 7/156 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY      I+ +D+T+  ++  V +W   +     +N  ++L GNK D +D 
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           +V    + + +  H     ++++ SAK N N ++ F
Sbjct: 129 RVVSSERGRQLADHL--GFEFFEASAKDNINVKQTF 162

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 52/97 (53%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAK 321
           ++  +   YY      I+ +D+T+  ++    D S +
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQ 105

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK 129
           F  +   YY      I+++D+T   T+ N+  W + +     +   ++L GNK D + R 
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 130 VKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           V A +     ++  + + + SAK++ N  + F  LA+
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 48/89 (53%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           F  +   YY      I+++D+T   T+ N
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTN 93

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 85/159 (53%), Gaps = 14/159 (8%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP--LVFHTN-------RGA-IRF 60
           K + +GD G GKT+ + ++  G+F  K++ T+G++     +V+  N       RG  I  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVL 118
            +WDTAG E+F  L   ++      +++FD+T+  ++ NV NW   L      EN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 119 CGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYN 155
           CGNK D++D++   + ++     K  + Y++ SA +  N
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN 171

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP--LVFHTN-------RGA-IRF 275
           K + +GD G GKT+ + ++  G+F  K++ T+G++     +V+  N       RG  I  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAG E+F  L   ++      +++FD+T+  ++ N
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLN 111

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 82.8 bits (203), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK 129
           F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D + R 
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 130 VKA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           V A +     ++  + + + SAK++ N  + F  LA+
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           F  +   YY      I+++DVT   T+ N
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTN 93

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 5/161 (3%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 78
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDR 128
           +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D++D+
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 129 KVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKL 167
           +  +     +R +  N+ Y + SAK+  N +K F  L R++
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 78
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD-----ISAKSNYNFEKPFLWLARK 336
           +  +RD Y+  G+  + +F +T   ++    D     +  K + N   PFL +  K
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLVGNK 132

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 5/161 (3%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 66
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDR 128
           +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D++D+
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 129 KVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKL 167
           +  +     +R +  N+ Y + SAK+  N +K F  L R++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 66
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD-----ISAKSNYNFEKPFLWLARK 336
           +  +RD Y+  G+  + +F +T   ++    D     +  K + N   PFL +  K
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLVGNK 120

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 5   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 63
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q   ++I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 64  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 123
Query: 126 KDRK 129
           +D K
Sbjct: 124 RDDK 127

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 7   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 65
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q   ++I F + S  +++N
Sbjct: 66  EDYDRLRPLSYPQTDVSLICFSLVSPASFEN 96

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 68/124 (54%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q   ++I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q   ++I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFEN 92

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 84/161 (52%), Gaps = 5/161 (3%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 74
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDR 128
           +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D++D+
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 129 KVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKL 167
           +  +     +R +  N+ Y + SAK+  N +K F  L R++
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 74
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD-----ISAKSNYNFEKPFLWLARK 336
           +  +RD Y+  G+  + +F +T   ++    D     +  K + N   PFL +  K
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLVGNK 128

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 5/161 (3%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 64
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDR 128
           +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D++D+
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 129 KVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKL 167
           +  +     +R    N+ Y + SAK+  N +K F  L R++
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 8/116 (6%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGQED 64
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD-----ISAKSNYNFEKPFLWLARK 336
           +  +RD Y+  G+  + +F +T   ++    D     +  K + N   PFL +  K
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLVGNK 118

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 9/146 (6%)
Query: 1   MAAEMDMP---SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA 57
           MA E   P   S K VLVGDGG GKT+ +     G F + Y  T+  E + +        
Sbjct: 23  MAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKP 81
Query: 58  IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPI 116
           +  ++WDTAGQ+ +  LR  +Y      ++ FDVTS  ++ N+ N W+ ++   C+ +PI
Sbjct: 82  VHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPI 141
Query: 117 VLCGNKVDIKDRKVKAKSIVFHRKKN 142
           ++ G K D++    K KS+V   ++N
Sbjct: 142 IVVGCKTDLR----KDKSLVNKLRRN 163

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           S K VLVGDGG GKT+ +     G F + Y  T+  E + +        +  ++WDTAGQ
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           + +  LR  +Y      ++ FDVTS  ++ N ++
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFN 126

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q   ++I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 128 RK 129
            K
Sbjct: 124 DK 125

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q   ++I F + S  +++N
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFEN 94

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 67/122 (54%), Gaps = 2/122 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q   ++I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 128 RK 129
            K
Sbjct: 122 DK 123

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q   ++I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFEN 92

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 20  MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 78
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 79  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 138
Query: 126 KDRK 129
           +D K
Sbjct: 139 RDDK 142

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 22  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 111

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/114 (32%), Positives = 64/114 (56%), Gaps = 1/114 (0%)
Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE+F 
Sbjct: 2   LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 73  GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 125
            +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+
Sbjct: 62  TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 48/87 (55%)
Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
           +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE+F 
Sbjct: 2   LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 61
Query: 288 GLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +   YY      I+++DVT + ++ N
Sbjct: 62  TITSSYYRGAHGIIVVYDVTDQESFNN 88

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 42/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +Y+NV   W  ++   C + PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 119
Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +Y+N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYEN 92

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V++G GG GK+    + + G F +KY  T+       V   +       + DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           G E+F  +RD Y   GQ   +++ +T++ T+ ++ +    ++RV   +++P++L GNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 119
Query: 125 IKDRKVKAKSI---VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++D +V  K     +  +  N  + + SAKS  N  + F  L R++
Sbjct: 120 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V++G GG GK+    + + G F +KY  T+       V   +       + DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTE 62
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           +F  +RD Y   GQ   +++ +T++ T+ +  D+
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 83/161 (51%), Gaps = 5/161 (3%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLED 66
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDR 128
           +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D++D+
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 129 KVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKL 167
           +  +     +R +  N+ Y + SAK+  N +K F  L R++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 52/116 (44%), Gaps = 8/116 (6%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLED 66
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD-----ISAKSNYNFEKPFLWLARK 336
           +  +RD Y+  G+  + +F +T   ++    D     +  K + N   PFL +  K
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENV--PFLLVGNK 120

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 6/166 (3%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V++G GG GK+    + + G F +KY  T+       V   +       + DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           G E+F  +RD Y   GQ   +++ +T++ T+ ++ +    ++RV   E++P++L GNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 125 IKDRKVKAKSIVFHRKK---NLQYYDISAKSNYNFEKPFLWLARKL 167
           ++D +V  K    +  +   N  + + SAKS  N  + F  L R++
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V++G GG GK+    + + G F +KY  T+       V   +       + DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTE 62
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           +F  +RD Y   GQ   +++ +T++ T+ +  D+
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 128 RK 129
            K
Sbjct: 122 DK 123

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 13  AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 131
Query: 128 RK 129
            K
Sbjct: 132 DK 133

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 13  AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 102

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 128 RK 129
            K
Sbjct: 149 DK 150

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 119

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 82/164 (50%), Gaps = 3/164 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +   K  L+GD G GK++ V R +   F+     T+G               +F +WDTA
Sbjct: 3   LRELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 62
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDI 125
           GQE+F  L   YY     AII++D+T   T+  + NW R+L +    +I + + GNK D+
Sbjct: 63  GQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 122
Query: 126 KD-RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
            D R+V  +    +    +  + + SAK+  N  + F+ ++R++
Sbjct: 123 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 43/89 (48%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K  L+GD G GK++ V R +   F+     T+G               +F +WDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  L   YY     AII++D+T   T+ 
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFS 94

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GK   +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 8   MQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 66
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 67  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 126
Query: 126 KDRK 129
           +D K
Sbjct: 127 RDDK 130

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GK   +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 10  AIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 68
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 99

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 4   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 62
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           G E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 63  GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 122
Query: 126 KDRK 129
           +D K
Sbjct: 123 RDDK 126

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG 
Sbjct: 6   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 95

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 2   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 60
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C + PI+L G K+D+
Sbjct: 61  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL 120
Query: 126 KDRK 129
           +D K
Sbjct: 121 RDDK 124

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 93

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V++G GG GK+    + + G F  +Y  T+       V   +       + DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           G E+F  +RD Y   GQ   +++ +T++ T+ ++ +    ++RV   E++P++L GNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119
Query: 125 IKDRKVKAKSIVFHRKK---NLQYYDISAKSNYNFEKPFLWLARKL 167
           ++D +V  K    +  +   N  + + SAKS  N  + F  L R++
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V++G GG GK+    + + G F  +Y  T+       V   +       + DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQV-EVDCQQCMLEILDTAGTE 62
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           +F  +RD Y   GQ   +++ +T++ T+ +  D+
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 96

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           G E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D+
Sbjct: 60  GLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDL 119
Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 2   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 60
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C + PI+L G K+D+
Sbjct: 61  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL 120
Query: 126 KDRK 129
           +D K
Sbjct: 121 RDDK 124

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 93

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 1   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C + PI+L G K+D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDL 119
Query: 126 KDRK 129
           +D K
Sbjct: 120 RDDK 123

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 82/166 (49%), Gaps = 8/166 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD   GKT    R   G F  +  AT+GV+        +   I+  +WDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 70  KF-GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 126
           +F   +   YY      + ++D+T+  ++ ++P W  +  +  +  +IP +L GNK D++
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 127 DRKVKAKSIV--FHRKKNLQYYDISAKS---NYNFEKPFLWLARKL 167
                   +   F    ++  ++ SAK+   N + E  F+ LA KL
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD   GKT    R   G F  +  AT+GV+        +   I+  +WDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 285 KF-GGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F   +   YY      + ++D+T+  ++ +
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHS 111

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T     +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 128 RK 129
            K
Sbjct: 149 DK 150

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T     +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 119

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K  L+GD G GK++ V R +   F+     T+G               +F +WDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD- 127
           +F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK D+ D 
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI 143
Query: 128 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R+V  K    +         + SAK+  N E+ F  ++R++
Sbjct: 144 REVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K  L+GD G GK++ V R +   F+     T+G               +F +WDTAGQE
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE 83
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +F  L   YY     A+I++D+T + ++
Sbjct: 84  RFHSLAPMYYRGSAAAVIVYDITKQDSF 111

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 128 RK 129
            K
Sbjct: 122 DK 123

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 92

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 6/166 (3%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V++G  G GK+    + + G F +KY  T+       V   +       + DTA
Sbjct: 3   MREYKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTA 61
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           G E+F  +RD Y   GQ   +++ +T++ T+ ++ +    ++RV   +++P++L GNK D
Sbjct: 62  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCD 121
Query: 125 IKDRKVKAKSI---VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++D +V  K     +  +  N  + + SAKS  N  + F  L R++
Sbjct: 122 LEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V++G  G GK+    + + G F +KY  T+       V   +       + DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQV-EVDAQQCMLEILDTAGTE 64
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           +F  +RD Y   GQ   +++ +T++ T+ +  D+
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDL 98

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 65/124 (52%), Gaps = 2/124 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGD   GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 8   MQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTA 66
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    +I F + S  +Y+NV   W  ++   C + PI+L G K+D+
Sbjct: 67  GQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDL 126
Query: 126 KDRK 129
           +D K
Sbjct: 127 RDDK 130

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGD   GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 10  AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +Y+N
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASYEN 99

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG 
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 128 RK 129
            K
Sbjct: 149 DK 150

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG 
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +++N
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFEN 119

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 75.9 bits (185), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQE 67
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 128
            +  LR   Y      I+ F + S+ +Y+NV   W  +L      +PIVL G K+D++D 
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127
Query: 129 K 129
           K
Sbjct: 128 K 128

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV VGDG  GKT  +  + +  F   YV T+       V   N   +   +WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVV-VNGATVNLGLWDTAGQE 67
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARKL-IGDP 341
            +  LR   Y      I+ F + S+ +Y+N     I    +Y    P + +  KL + D 
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127
Query: 342 NLEFVAMPALLP 353
              F+  P  +P
Sbjct: 128 KQFFIDHPGAVP 139

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K  L+GD G GK++ + R +   F+     T+G               +F +WDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD- 127
           +F  L   YY     AII++D+T   T+  + NW R+L +    +I + + GNK D+ D 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 128 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R+V  +    +    +  + + SAK+  N  + F+ ++R++
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K  L+GD G GK++ + R +   F+     T+G               +F +WDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYK 313
           +F  L   YY     AII++D+T   T+ 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFS 95

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGD   GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 9   AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    +I F + S  +Y+NV   W  ++   C + PI+L G K+D++D
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 127
Query: 128 RK 129
            K
Sbjct: 128 DK 129

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGD   GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 9   AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q    +I F + S  +Y+N
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYEN 98

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 67/130 (51%), Gaps = 3/130 (2%)
Query: 2   AAEMDMPSF-KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
            + M +  F KCV VGDG  GKT  +  + + +F   Y+ T+       V   +   +  
Sbjct: 1   GSHMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNL 59
Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLC 119
            +WDTAGQE +  LR   Y      ++ F + S+ +Y+NV   W  +L R   N+PIVL 
Sbjct: 60  GLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLV 119
Query: 120 GNKVDIKDRK 129
           G K+D++D K
Sbjct: 120 GTKLDLRDDK 129

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV VGDG  GKT  +  + + +F   Y+ T+       V   +   +   +WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANV-AVDGQIVNLGLWDTAGQE 68
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +  LR   Y      ++ F + S+ +Y+N
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYEN 98

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 79/166 (47%), Gaps = 8/166 (4%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD   GKT    R   G F  +  AT+GV+        +   I+  +WDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 70  KF-GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 126
           +F   +   YY      + ++D T+  ++ ++P W  +  +  +  +IP +L GNK D++
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 149
Query: 127 DRKVKAKSIV--FHRKKNLQYYDISAKS---NYNFEKPFLWLARKL 167
                   +   F    +   ++ SAK+   N + E  F  LA KL
Sbjct: 150 SAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD   GKT    R   G F  +  AT+GV+        +   I+  +WDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 285 KF-GGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F   +   YY      + ++D T+  ++ +
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHS 120

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 84/164 (51%), Gaps = 10/164 (6%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLED 67
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKD 127
           +  +RD Y+  G+  +++F +T   ++     +   ++RV    + IP+++ GNK D+++
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 128 RKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R+     +A+S     +  +QY + SAK+  N +K F  L R++
Sbjct: 128 RRQVPVEEARSKA--EEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLED 67
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +  +RD Y+  G+  +++F +T   ++
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESF 94

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 4/164 (2%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTA
Sbjct: 1   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+VL GNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 125 IKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 84/164 (51%), Gaps = 10/164 (6%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLED 63
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKD 127
           +  +RD Y+  G+  +++F +T   ++     +   ++RV    + IP+++ GNK D+++
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 128 RKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R+     +A+S     +  +QY + SAK+  N +K F  L R++
Sbjct: 124 RRQVPVEEARSKA--EEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTAGLED 63
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITY 312
           +  +RD Y+  G+  +++F +T   ++
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESF 90

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 4/164 (2%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+VL GNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 125 IKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 4/164 (2%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTA
Sbjct: 1   MTEYKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+VL GNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 125 IKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 120 LAGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/121 (33%), Positives = 60/121 (49%), Gaps = 2/121 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQE 65
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDR 128
            +  LR   Y      I+ F + S+ +Y+NV   W  +L      +PI+L G K+D++D 
Sbjct: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
Query: 129 K 129
           K
Sbjct: 126 K 126

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV VGDG  GKT  +  + +  F   YV T+       V   +   +   +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVV-VDGNTVNLGLWDTAGQE 65
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARKL-IGDP 341
            +  LR   Y      I+ F + S+ +Y+N     I    +Y    P + +  KL + D 
Sbjct: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
Query: 342 NLEFVAMPALLP 353
              F+  P  +P
Sbjct: 126 KQFFIDHPGAVP 137

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 128
            +  LR   Y Q    +I F + S  ++ +V   W+ ++   C N PI+L G K+D++D 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 129 K 129
           K
Sbjct: 275 K 275

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +  LR   Y Q    +I F + S  ++ +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHH 244

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 81/164 (49%), Gaps = 4/164 (2%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTA
Sbjct: 1   MTEYKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+VL GNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119
Query: 125 IKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 128
            +  LR   Y Q    +I F + S  ++ +V   W+ ++   C N PI+L G K+D++D 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 129 K 129
           K
Sbjct: 275 K 275

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +  LR   Y Q    +I F + S  ++ +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHH 244

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 2/121 (1%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 128
            +  LR   Y Q    +I F + S  ++ +V   W+ ++   C N PI+L G K+D++D 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 129 K 129
           K
Sbjct: 275 K 275

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +  LR   Y Q    +I F + S  ++ +
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHH 244

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 11  MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 69
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 70  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 129
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 130 RDDPSTIEKLAKNKQKPI 147

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 13  TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 71
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 72  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 131
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 132 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 163

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 72.0 bits (175), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 8   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 66
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 67  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 126
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 127 RDDPSTIEKLAKNKQKPI 144

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 10  TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 128
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 129 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 160

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 72.0 bits (175), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 2   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 60
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 61  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 120
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 121 RDDPSTIEKLAKNKQKPI 138

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 4   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 62
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 63  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 122
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 123 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 154

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 4   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 62
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 63  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 122
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 123 RDDPSTIEKLAKNKQKPI 140

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 6   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 125 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 156

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 3   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 61
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 62  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 121
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 122 RDDPSTIEKLAKNKQKPI 139

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 5   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 124 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 155

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 3   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 61
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 62  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 121
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 122 RDDPSTIEKLAKNKQKPI 139

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 5   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 124 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 155

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTA
Sbjct: 2   MTEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTA 60
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  +++++ ++   + RV   E++P+VL GNK D
Sbjct: 61  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSD 120
Query: 125 IKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +  R V  K      R   + + + SAK+    +  F  L R++
Sbjct: 121 LPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 71.6 bits (174), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 4   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 62
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 63  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 122
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 123 RDDPSTIEKLAKNKQKPI 140

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 6   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 125 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 156

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 75/165 (45%), Gaps = 15/165 (9%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            KCV VGDG  GKT  +  +    F   YV T+       V   +   +   +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR 128
            +  LR   Y      ++ F + S+ +Y+N+   W  +L      IPIVL G K+D++D 
Sbjct: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDD 125
Query: 129 KV------KAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
           K        A SI   + + L       +Y + S+K+  N +  F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 1/92 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            KCV VGDG  GKT  +  +    F   YV T+       V   +   +   +WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTVFDNFSANVV-VDGSTVNLGLWDTAGQE 65
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
            +  LR   Y      ++ F + S+ +Y+N +
Sbjct: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENIH 97

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 39/198 (19%)
Query: 8   PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV----------------- 50
            S+K VL+G+   GK++ V R     F +    T+G      V                 
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 51  --------------------FHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD 90
                               ++ N   I+F++WDTAGQE++  +   YY    CAI++FD
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 91  VTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDIS 149
           +++  T      W   L ++  N  I+L  NK+D    +V    +  + +  NL +   S
Sbjct: 126 ISNSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 150 AKSNYNFEKPFLWLARKL 167
           AK+  N +  F  LA ++
Sbjct: 185 AKTGTNIKNIFYMLAEEI 202

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 37/125 (29%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV------------------ 265
           S+K VL+G+   GK++ V R     F +    T+G      V                  
Sbjct: 7   SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNN 66
Query: 266 -------------------FHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDV 306
                              ++ N   I+F++WDTAGQE++  +   YY    CAI++FD+
Sbjct: 67  NINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDI 126
Query: 307 TSRIT 311
           ++  T
Sbjct: 127 SNSNT 131

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           KCVLVGDG  GKT+ V  + T  +  +Y+ T   +    V   +   +R  + DTAGQ++
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK-DR 128
           F  LR   Y      ++ F V S  +++NV   W  ++   C   PI+L G + D++ D 
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDV 140
Query: 129 KV--------------KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
           KV              +A  ++    K   Y + SA +  N ++ F
Sbjct: 141 KVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           KCVLVGDG  GKT+ V  + T  +  +Y+ T   +    V   +   +R  + DTAGQ++
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPT-AFDNFSAVVSVDGRPVRLQLCDTAGQDE 80
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           F  LR   Y      ++ F V S  +++N
Sbjct: 81  FDKLRPLCYTNTDIFLLCFSVVSPSSFQN 109

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 65
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D++D
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 128 RKVKAKSIVFHRKKNL 143
                + +  +++K +
Sbjct: 126 DPSTIEKLAKNKQKPI 141

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 65
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 126 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 157

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D++D
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 128 RKVKAKSIVFHRKKNL 143
                + +  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAGQ 61
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D++D
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 128 RKVKAKSIVFHRKKNL 143
                + +  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 77/156 (49%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVXIGGEPYTLGLFDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            + DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            + DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 94

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV  +  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV  +  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +  G+F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD-- 127
           +  LR   Y      +I F +    + +NV   W  +++  C+ +PI+L G KVD+++  
Sbjct: 71  YDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDP 130
Query: 128 ------RKVKAKSIVFHRKKNLQ-------YYDISAKSNYNFEKPFLWLAR 165
                 R+   + +     +++        YY+ SAK+ Y   + F    R
Sbjct: 131 QTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAATR 181

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +  G+F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 12  KLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQED 70
Query: 286 FGGLRDGYYIQGQCAIIMFDV 306
           +  LR   Y      +I F +
Sbjct: 71  YDRLRPLSYPDSNVVLICFSI 91

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 121

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 92

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 121

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 92

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GK   +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 8   MQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 66
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 67  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 126
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 127 RDDPSTIEKLAKNKQKPI 144

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GK   +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 10  TIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 128
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 129 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 160

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +   +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +   +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 67/143 (46%), Gaps = 21/143 (14%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTA
Sbjct: 3   MQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTA 61
Query: 67  GQEKFGGLRDGYYIQ-------------------GQCAIIMFDVTSRITYKNV-PNWHRD 106
           GQE +  LR   Y Q                       +I F + S  +++NV   W+ +
Sbjct: 62  GQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPE 121
Query: 107 LVRVCENIPIVLCGNKVDIKDRK 129
           +   C N PI+L G K+D++D K
Sbjct: 122 VRHHCPNTPIILVGTKLDLRDDK 144

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           E +  LR   Y Q        D+TSR   K   D+
Sbjct: 64  EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADV 98

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           G E +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAG 
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGL 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 4/161 (2%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           +K V+VG  G GK+    + +   F  +Y  T+       V       +  ++ DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCL-LDILDTAGQE 63
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 127
           ++  +RD Y   G+  + +F + +  +++++ ++   + RV   E++P+VL GNK D+  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 128 RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           R V  K      R   + + + SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 94

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 94

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 125

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 96

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 127

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 98

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 124

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 95

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 61/117 (52%), Gaps = 2/117 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIK 126
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 122

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 94

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 57  AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENI 114
           A R ++ DTAGQE+FG +R+ Y   G+  +++F VT R +++ +  + R ++RV   +  
Sbjct: 52  AARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEF 111
Query: 115 PIVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           P++L GNK D+  ++   + +     R+  + Y + SAK   N ++ F  L R
Sbjct: 112 PMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR 164

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
           A R ++ DTAGQE+FG +R+ Y   G+  +++F VT R +++  Y
Sbjct: 52  AARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIY 96

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 2/140 (1%)
Query: 5   MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWD 64
           M + + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++D
Sbjct: 3   MGIQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFD 61
Query: 65  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKV 123
           TAG E +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++
Sbjct: 62  TAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQI 121
Query: 124 DIKDRKVKAKSIVFHRKKNL 143
           D++D     + +  +++K +
Sbjct: 122 DLRDDPSTIEKLAKNKQKPI 141

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T +F  +YV T+  + + +            ++DTAG 
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGL 65
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 126 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 157

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 125

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 96

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 123

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 94

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGD   GKT  +  + T +F  +YV T+  + + +            ++DTA
Sbjct: 1   MQTIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTA 59
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV   W  ++   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119
Query: 126 KDRKVKAKSIVFHRKKNL 143
           +D     + +  +++K +
Sbjct: 120 RDDPSTIEKLAKNKQKPI 137

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 76/156 (48%), Gaps = 10/156 (6%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGD   GKT  +  + T +F  +YV T+  + + +            ++DTAGQ
Sbjct: 3   TIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARK--LIG 339
           E +  LR   Y Q    ++ F V S  +++N  +  +   +++  + PFL +  +  L  
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 340 DPN-LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ 374
           DP+ +E +A     P    + P+   ++ +DLK  +
Sbjct: 122 DPSTIEKLAKNKQKP----ITPETAEKLARDLKAVK 153

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 97

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 125

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 96

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 68.2 bits (165), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 126
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D++
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLR 142

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 114

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      EF + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 126
           +  LR   Y      ++ F V S  + +N+P  W  ++   C N+PI+L  NK D++
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLR 142

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      EF + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F V S  + +N
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLEN 114

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 64/113 (56%), Gaps = 4/113 (3%)
Query: 59  RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPI 116
           R ++ DTAGQE+FG +R+ Y   G   +++F +  R ++  V      ++RV   ++ P+
Sbjct: 58  RLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV 117
Query: 117 VLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           VL GNK D++ ++   ++++  F    ++ Y++ SAK   N ++ F  L R +
Sbjct: 118 VLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 126

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 97

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 60/118 (50%), Gaps = 2/118 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 124

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGD   GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 95

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 65.9 bits (159), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 89/171 (52%), Gaps = 9/171 (5%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWD 64
           M   K V++GDG +GKT+         F K+Y  T+G++  +  +    N   +   +WD
Sbjct: 4   MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLN-VTLQIWD 62
Query: 65  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENI---PIV-LCG 120
             GQ   G + D Y    Q  ++++D+T+  +++N+ +W+  + +V E     P+V L G
Sbjct: 63  IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVG 122
Query: 121 NKVDIKD-RKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
           NK+D++  R +K  K + F ++     + +SAK+  +    F  +A +++G
Sbjct: 123 NKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 282
            K V++GDG +GKT+         F K+Y  T+G++  +  +    N   +   +WD  G
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLN-VTLQIWDIGG 65
Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           Q   G + D Y    Q  ++++D+T+  +++N  D
Sbjct: 66  QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED 100

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 64.7 bits (156), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQ 68
            KCV+VGDG  GKT  +  +    F ++YV T  V  H  V  T  G      ++DTAGQ
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT--VFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y      +I F V +  +++NV   W  +L     N+P +L G ++D++D
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQ 283
            KCV+VGDG  GKT  +  +    F ++YV T  V  H  V  T  G      ++DTAGQ
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT--VFDHYAVSVTVGGKQYLLGLYDTAGQ 76
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWLARKL 337
           E +  LR   Y      +I F V +  +++N  +  +     Y    PFL +  ++
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQI 132

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +      +F   YV T+  E +      +   +   +WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRK 129
           +   R   Y      ++ F + S  + +N+P  W  ++   C N+PI+L GNK D+++ +
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 130 VKAKSIVFHRKKNLQ 144
             A+ +   +++ ++
Sbjct: 126 HTARELAKMKQEPVK 140

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 80/159 (50%), Gaps = 6/159 (3%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           ++  + G GG GK++ V R + G F + Y+ T+  + +  V   ++      + DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIK 126
           +F  ++     +G   I+++ +TSR + + +   +  +  +    E+IPI+L GNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 127 -DRKVK-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163
             R+V+ +++    R     + + SAK N+N ++ F  L
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           ++  + G GG GK++ V R + G F + Y+ T+  + +  V   ++      + DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE-DTYRQVISCDKSICTLQITDTTGSH 62
Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           +F  ++     +G   I+++ +TSR
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSR 87

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 126
           +  LR   Y      ++ F + S  + +N+P  W  ++     N+PI+L GNK D++
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLR 142

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGDG  GKT  +      +F + YV T+  E +      +   +   +WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  LR   Y      ++ F + S  + +N
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLEN 114

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 60  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 119
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 120 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 58  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 118 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 58  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 118 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 59  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 118
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 119 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/165 (33%), Positives = 90/165 (54%), Gaps = 6/165 (3%)
Query: 6   DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
           ++P++K V+VGDGG GK+    +     F  +Y  T+           N+ AI  +V DT
Sbjct: 15  NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWAI-LDVLDT 73
Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKV 123
           AGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ ++RV   E+ P++L  NKV
Sbjct: 74  AGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 133
Query: 124 DIKD-RKV-KAKSIVFHRKKNLQYYDISAKS-NYNFEKPFLWLAR 165
           D+   RKV + +      K N+ Y + SAK    N +K F  L R
Sbjct: 134 DLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 54  NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-- 111
           N+ AI  +V DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ ++RV   
Sbjct: 63  NQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 121
Query: 112 ENIPIVLCGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKS-NYNFEKPFLWLAR 165
           E+ P++L  NKVD+   RKV + +      K N+ Y + SAK    N +K F  L R
Sbjct: 122 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R+ 
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREF 163

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 54  NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-- 111
           N+ AI  +V DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ ++RV   
Sbjct: 63  NQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 121
Query: 112 ENIPIVLCGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKS-NYNFEKPFLWLAR 165
           E+ P++L  NKVD+   RKV + +      K N+ Y + SAK    N +K F  L R
Sbjct: 122 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 6/117 (5%)
Query: 54  NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-- 111
           N+ AI  +V DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ ++RV   
Sbjct: 58  NQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR 116
Query: 112 ENIPIVLCGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKS-NYNFEKPFLWLAR 165
           E+ P++L  NKVD+   RKV + +      K N+ Y + SAK    N +K F  L R
Sbjct: 117 ESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + K V+VGDG  GKT  +     GE    YV T+      ++ + N   I  ++WDTAGQ
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQ 81
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 126
           E++  LR   Y      ++ F V +R ++ N+   W  ++    +    VL G KVD++
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + K V+VGDG  GKT  +     GE    YV T+      ++ + N   I  ++WDTAGQ
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQ 81
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E++  LR   Y      ++ F V +R ++ N
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDN 112

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GN+ D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNRCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + K V+VGDG  GKT  +     GE    YV T+      ++ + N   I  ++WDTAGQ
Sbjct: 22  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQ 80
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIK 126
           E++  LR   Y      ++ F V +R ++ N+   W  ++    +    VL G KVD++
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 139

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + K V+VGDG  GKT  +     GE    YV T+      ++ + N   I  ++WDTAGQ
Sbjct: 22  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFI-LHLWDTAGQ 80
Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E++  LR   Y      ++ F V +R ++ N
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDN 111

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++ ++   + RV   E++P+V
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V  K      R   + + + SAK+    +  F  L R++
Sbjct: 114 LVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  +++++ ++   + RV   E++P+V
Sbjct: 54  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 113
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V  K      R   + + + SAK+    +  F  L R++
Sbjct: 114 LVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DT GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DT GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE+   +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG+E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTA QE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTA QE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKXDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 58  LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 117
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 118 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++ ++   + RV   E++P+V
Sbjct: 71  LDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMV 130
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V  K      R   + + + SAK+    +  F  L R++
Sbjct: 131 LVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAG E++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+V
Sbjct: 53  LDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMV 112
Query: 118 LCGNKVDIKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 113 LVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 22  KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ 81
           K++ V R + G F   Y+ T+  + +  V   ++      + DT G  +F  ++     +
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIE-DTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISK 79
Query: 82  GQCAIIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKVKAKSI-VF 137
           G   I++F VTS+ + + +   ++ +V++    E+IP++L GNK D   R+V  +     
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAV 139
Query: 138 HRKKNLQYYDISAKSNYNFEKPFLWL 163
            ++    + + SAK NYN ++ F  L
Sbjct: 140 AQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 58/111 (52%), Gaps = 3/111 (2%)
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++ DTAGQE++  +RD Y   G+  + +F + +  ++ ++  +   + RV   +++P+V
Sbjct: 71  LDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMV 130
Query: 118 LCGNKVDIKDRKVKAKSI-VFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+  R V  K      +   + + + SAK+    E  F  L R++
Sbjct: 131 LVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 143
Query: 130 VKAKSIVFHRKKNLQY 145
                +  HR+  + Y
Sbjct: 144 STLVELSNHRQTPVSY 159

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      +I FD++
Sbjct: 84  YDNVRPLSYPDSDAVLICFDIS 105

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148
Query: 130 VKAKSIVFHRKKNLQY 145
                +  HR+  + Y
Sbjct: 149 STLVELSNHRQTPVSY 164

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      +I FD++
Sbjct: 89  YDNVRPLSYPDSDAVLICFDIS 110

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 130 VKAKSIVFHRKKNLQY 145
                +  HR+  + Y
Sbjct: 128 STLVELSNHRQTPVSY 143

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      +I FD++
Sbjct: 68  YDNVRPLSYPDSDAVLICFDIS 89

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 22  KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ 81
           K+    + +TG F +KY  T+  + +      +       + DTAG E+F  +RD Y   
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 82  GQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDI 125
           GQ  I+++ + ++ +++++      ++RV   E +P++L GNKVD+
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDL 120

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 86/176 (48%), Gaps = 18/176 (10%)
Query: 4   EMDMPSFKCVLVGDGGTGKTT----FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           E  M  ++ VL+G+ G GK+T    F   H + + + + +     E   +V   +   I 
Sbjct: 1   EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL--VRVCENIPIV 117
            ++W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 118 LCGNKVD-IKDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D ++ R+V     +A ++VF    + ++ + SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 85/176 (48%), Gaps = 18/176 (10%)
Query: 4   EMDMPSFKCVLVGDGGTGKTT----FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR 59
           E  M  ++ VL+G+ G GK+T    F   H + + + + +     E   +V   +   I 
Sbjct: 1   EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60
Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL--VRVCENIPIV 117
            ++W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 118 LCGNKVD-IKDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D ++ R+V     +A ++VF  K    + + SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXK----FIETSAAVQHNVKELFEGIVRQV 170

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            +  LVG   +GKTTFV    +G+F +  + T+G  +  +     +G +   +WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTIKIWDIGGQP 78
Query: 70  KFGGLRDGYYIQGQCAII-MFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 126
           +F  + +  Y +G  AI+ M D   R   +   N   +L+     + IP+++ GNK D+ 
Sbjct: 79  RFRSMWE-RYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLP 137
Query: 127 D-----RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163
           +     + ++  ++   + + +  Y IS K   N +    WL
Sbjct: 138 NALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            +  LVG   +GKTTFV    +G+F +  + T+G  +  +     +G +   +WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT----KGNVTIKIWDIGGQP 78
Query: 285 KFGGLRDGYYIQGQCAII-MFDVTSR 309
           +F  + +  Y +G  AI+ M D   R
Sbjct: 79  RFRSMWE-RYCRGVNAIVYMIDAADR 103

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 13/162 (8%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            +  LVG   +GKTTFV    +G+F +  + T+G  +  +     +G +   +WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQP 78
Query: 70  KFGGLRDGYYIQGQCAII-MFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 126
           +F  + +  Y +G  AI+ M D   +   +   N   +L+     + IP+++ GNK D+ 
Sbjct: 79  RFRSMWE-RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137
Query: 127 ---DRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL 163
              D K  ++  ++   + + +  Y IS K   N +    WL
Sbjct: 138 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            +  LVG   +GKTTFV    +G+F +  + T+G  +  +     +G +   +WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQP 87
Query: 70  KFGGLRDGYYIQGQCAII-MFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIK 126
           +F  + +  Y +G  AI+ M D   +   +   N   +L+     + IP+++ GNK D+ 
Sbjct: 88  RFRSMWE-RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 146
Query: 127 ---DRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
              D K  ++  ++   + + +  Y IS K   N +    WL +
Sbjct: 147 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIK 126
           +  +R   Y      ++ FD++   T  + +  W  +++  C +  ++L G K D++
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 128

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      ++ FD++
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDIS 93

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIK 126
           +  +R   Y      ++ FD++   T  + +  W  +++  C +  ++L G K D++
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 144

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      ++ FD++
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDIS 109

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIK 126
           +  +R   Y      ++ FD++   T  + +  W  +++  C +  ++L G K D++
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLR 127

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K VLVGD   GKT  ++      + + YV T+  E +     T    +  ++WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70
Query: 286 FGGLRDGYYIQGQCAIIMFDVT 307
           +  +R   Y      ++ FD++
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDIS 92

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 88/179 (49%), Gaps = 18/179 (10%)
Query: 1   MAAEMDMPSFKCVLVGDGGTGKTT----FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 56
           +++E     ++ VL+G+ G GK+T    F   H + + + + +     E   +V   +  
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESAT 88
Query: 57  AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL--VRVCENI 114
            I  ++W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+I
Sbjct: 89  IILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDI 146
Query: 115 PIVLCGNKVD-IKDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           PI+L GNK D ++ R+V     +A ++VF    + ++ + SA   +N ++ F  + R++
Sbjct: 147 PIILVGNKSDLVRCREVSVSEGRACAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 84/170 (49%), Gaps = 18/170 (10%)
Query: 10  FKCVLVGDGGTGKTT----FVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
           ++ VL+G+ G GK+T    F   H + + + + +     E   +V   +   I  ++W+ 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 66
Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL--VRVCENIPIVLCGNKV 123
            G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+L GNK 
Sbjct: 67  KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 124 D-IKDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           D ++ R+V     +A ++VF    + ++ + SA   +N ++ F  + R++
Sbjct: 125 DLVRCREVSVSEGRACAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 76/166 (45%), Gaps = 12/166 (7%)
Query: 11  KCVLVGDGGTGKTTFVKRHLT--GEFEKKYVATLGVEV--HPLVFHTNRGAIRFNVWDTA 66
           K  +VG+   GK+  +    +   +F K Y  T GVEV   P+       ++   + DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL--VRVCENIPI--VLCGNK 122
           G + +      Y+     AI++FDV+S  ++++   W   L   R     P+  VL  NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 123 VDIKDRKVKAKSIV---FHRKKNLQYYDISAK-SNYNFEKPFLWLA 164
            D+  ++ + +  +   +     L ++D+SA     + + PFL +A
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 65/125 (52%), Gaps = 4/125 (3%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V++G    GKT+   + + GEF + Y  T+    +  +    +     ++ DTAGQ++
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE-NTYSKIVTLGKDEFHLHLVDTAGQDE 84
Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIK-D 127
           +  L   + I     ++++ VTS  +++ + + ++ L        +P+VL GNK D+  +
Sbjct: 85  YSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144
Query: 128 RKVKA 132
           R+V+A
Sbjct: 145 REVQA 149

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/168 (25%), Positives = 76/168 (45%), Gaps = 23/168 (13%)
Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  ++ VL+GD G GKT+       G+ E+     LG +V+      +       V DT 
Sbjct: 2   MALYRVVLLGDPGVGKTSLASL-FAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTW 60
Query: 67  GQEKFGGLRDGYYIQGQCA------IIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVL 118
             EK     D  + Q  C       +I++ +  R ++++       L R    +++PI+L
Sbjct: 61  EAEKL----DKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIIL 116
Query: 119 CGNKVDI-KDRKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPF 160
            GNK D+ + R+V     +A ++VF    + ++ + SA   +N  + F
Sbjct: 117 VGNKADLARCREVSVEEGRACAVVF----DCKFIETSATLQHNVAELF 160

>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's Disease-associated Leucine-rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 184

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 11/176 (6%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVH--PLVFHTNRGA-IRFNVWDT 65
           K  +VG+ G+GKTT +++    +        AT+G++V   P+     R   +  NVWD 
Sbjct: 4   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 63
Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTS-RITYKNVPNWHRDLVRVCENIPIVLCGNKVD 124
           AG+E+F      +  Q    + ++D++  +        W  ++     + P++L G  +D
Sbjct: 64  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHLD 123
Query: 125 IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNF-----EKPFLWLARKLIGDPNLEF 175
           + D K +        K+ L      A  +Y+F     E   L   RK I + +L F
Sbjct: 124 VSDEKQRKACXSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNF 179

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 6/118 (5%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL-GVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           K  + G  G GK+  V R LT  F  +Y  TL     H          +   + DTAGQE
Sbjct: 30  KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDE--VVSMEILDTAGQE 87
Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHR--DLVRVCENIPIVLCGNKVDI 125
                R+G+   G+  ++++D+T R +++ V       D ++  +N+ ++L GNK D+
Sbjct: 88  DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADL 144

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +LVG+ G GK+T        + +  +      + +      ++  +   V+D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 70  KFGG-LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVLCGNKVDIK 126
             GG LRD     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 142
Query: 127 DRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWLARKL 167
               +++ +     ++L      ++ + SA  ++N  + F    R++
Sbjct: 143 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           S K  ++G    GK++   + + G+F   Y  T+      L+   N       + DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI-TVNGQEYHLQLVDTAGQ 64
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIK 126
           +++      Y I     I+++ VTS  +++ +   H  L+ +     IPI+L GNK D+ 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
Query: 127 DRKV 130
             +V
Sbjct: 125 MERV 128

>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals A Dimeric Gtpase Length = 171

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 68/152 (44%), Gaps = 6/152 (3%)
Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLGVEVH--PLVFHTNRGA-IRFNVWDT 65
           K  +VG+ G+GKTT +++    +        AT+G++V   P+     R   +  NVWD 
Sbjct: 2   KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTS-RITYKNVPNWHRDLVRVCENIPIVLCGNKVD 124
           AG+E+F      +  Q    + ++D++  +        W  ++     + P++L G  +D
Sbjct: 62  AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVILVGTHLD 121
Query: 125 IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNF 156
           + D K +        K+ L      A  +Y+F
Sbjct: 122 VSDEKQRKACXSKITKELLNKRGFPAIRDYHF 153

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           S K  ++G    GK++   + + G+F   Y  T+      L+   N       + DTAGQ
Sbjct: 1   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI-TVNGQEYHLQLVDTAGQ 59
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIK 126
           +++      Y I     I+++ VTS  +++ +   H  L+ +     IPI+L GNK D+ 
Sbjct: 60  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 119
Query: 127 DRKV 130
             +V
Sbjct: 120 MERV 123

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           S K  ++G    GK++   + + G+F   Y  T+      L+   N       + DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLI-TVNGQEYHLQLVDTAGQ 64
Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIK 126
           +++      Y I     I+++ VTS  +++ +   H  L+ +     IPI+L GNK D+ 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
Query: 127 DRKV 130
             +V
Sbjct: 125 MERV 128

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 76/176 (43%), Gaps = 31/176 (17%)
Query: 10  FKCVLVGDGGTGKTTFV---------KRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           FK +LVG+ G GK+T             H     E  Y   + V+   +        I +
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTL------IVY 56
Query: 61  NVWDTAGQEKFGG-LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIV 117
           ++W+   Q   GG L+D     G   +I+F VT R ++  VP     L   R   ++P++
Sbjct: 57  DIWE---QGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVI 113
Query: 118 LCGNKVDIKDRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+     +++ +     ++L      ++ + SA  ++N  + F    R++
Sbjct: 114 LVGNKSDL----ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 13/167 (7%)
Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+G+ G GK+T        + +  +      + +      ++  +   V+D   Q 
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 70  KFGG-LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV--RVCENIPIVLCGNKVDIK 126
             GG L+D     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 73  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 131
Query: 127 DRKVKAKSIVFHRKKNL------QYYDISAKSNYNFEKPFLWLARKL 167
               +++ +     ++L      ++ + SA  ++N  + F    R++
Sbjct: 132 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|2H57|A Chain A, Crystal Structure Of Human Adp-Ribosylation Factor-Like 6 Length = 190

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 23/133 (17%)
Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVA-TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF 71
           + +G   +GKTT + +      + + +  T+G  +          ++ F V+D +GQ ++
Sbjct: 25  LCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKF----KSSSLSFTVFDMSGQGRY 80
Query: 72  GGLRDGYYIQGQCAIIMFDVTSRI----------TYKNVPNW-HRDLVRVCENIPIVLCG 120
             L + YY +GQ  I + D + R+          T  N P+  HR        IPI+   
Sbjct: 81  RNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHR-------RIPILFFA 133
Query: 121 NKVDIKDRKVKAK 133
           NK+D++D     K
Sbjct: 134 NKMDLRDAVTSVK 146

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	385
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-129
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-88
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-110
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	6e-75
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-41
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	5e-20
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	6e-40
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-18
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-39
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-18
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	4e-39
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-18
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	5e-39
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	6e-21
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	8e-39
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-20
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	3e-38
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-17
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	5e-38
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	8e-18
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-37
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-18
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-37
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-16
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-37
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	5e-17
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	3e-37
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	9e-18
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	3e-37
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-19
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	6e-37
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	5e-18
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	7e-37
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-19
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-36
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-18
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-36
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-17
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-36
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	7e-19
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	2e-36
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	6e-17
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-36
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-17
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-36
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-17
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-36
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	5e-19
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-36
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-17
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-36
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-17
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	4e-36
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-16
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	4e-36
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	6e-17
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	4e-36
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	4e-18
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	4e-36
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-17
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	5e-36
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-16
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	5e-36
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-17
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	5e-36
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-18
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	6e-36
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	5e-17
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	6e-36
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-17
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	7e-36
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	5e-18
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	7e-36
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	1e-17
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	8e-36
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-17
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	8e-36
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	6e-17
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	9e-36
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-18
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	1e-35
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	6e-18
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-35
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-17
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-35
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	4e-18
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-35
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	1e-17
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-35
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	5e-18
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-35
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-17
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-35
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	4e-18
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-35
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	9e-18
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-35
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	9e-18
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-35
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	7e-18
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-35
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-17
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-34
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	8e-18
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	2e-34
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	5e-17
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	4e-34
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-16
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	5e-34
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	1e-17
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	5e-34
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	4e-16
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	6e-34
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	8e-18
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	6e-34
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-15
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-33
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	5e-15
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	3e-33
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	4e-17
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-32
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-18
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-32
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-15
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-31
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	9e-14
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-31
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-16
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-31
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-12
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	3e-31
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	4e-13
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	3e-31
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	6e-18
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-30
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-18
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	3e-30
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-19
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-30
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	2e-18
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	7e-30
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	3e-15
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	4e-29
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	3e-19
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	5e-29
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-18
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	7e-29
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	7e-18
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	7e-29
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-17
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	8e-29
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-14
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	1e-28
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-17
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-28
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-17
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	4e-28
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-13
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-27
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-17
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	4e-27
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-17
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	7e-27
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-17
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	3e-26
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	5e-16
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	6e-17
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	7e-09
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	8e-15
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-14
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	4e-10
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-12
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	3e-08
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-10
3llu_A	196	RAS-related GTP-binding protein C; structural geno	3e-08
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-08
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	8e-07
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	2e-08
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-05
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-08
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	1e-05
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	4e-08
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	1e-05
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	5e-08
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	2e-05
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	7e-08
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	2e-05
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	9e-08
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	2e-05
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	9e-08
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	2e-05
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-07
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	6e-05
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	3e-07
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-04
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	4e-07
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	5e-05
2fh5_B	214	SR-beta, signal recognition particle receptor beta	3e-06
2fh5_B	214	SR-beta, signal recognition particle receptor beta	7e-06
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	4e-06
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	2e-05
2ged_A	193	SR-beta, signal recognition particle receptor beta	4e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	4e-05
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	3e-04

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  369 bits (950), Expect = e-129
 Identities = 189/218 (86%), Positives = 197/218 (90%), Gaps = 3/218 (1%)

Query: 1   MAAEMD---MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA 57
           MA+         FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63

Query: 58  IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIV 117
           I+FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIV
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV 123

Query: 118 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 177
           LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA
Sbjct: 124 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 183

Query: 178 MPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 215
           MPAL PPEV MDP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 184 MPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL 221

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  266 bits (681), Expect = 1e-88
 Identities = 144/218 (66%), Positives = 152/218 (69%), Gaps = 48/218 (22%)

Query: 216 MAAEMD---MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA 272
           MA+         FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 
Sbjct: 4   MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGP 63

Query: 273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------ 314
           I+FNVWDTAGQEKFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                  
Sbjct: 64  IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIV 123

Query: 315 ---------------------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 347
                                      YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA
Sbjct: 124 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA 183

Query: 348 MPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL 385
           MPAL PPEV MDP   ++ E DL+ AQ TALPD+D+DL
Sbjct: 184 MPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL 221

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  320 bits (823), Expect = e-110
 Identities = 92/207 (44%), Positives = 126/207 (60%), Gaps = 4/207 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQ 68
           +K  L+GDGG GKTT++ R L G FEK Y AT+G   HP+ F  ++G  I+FNVWDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD 127
           EK   L+D YYI    AI+ FDVTSRIT +N+  W ++   V     PIV+C NK+DIK+
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 128 RKVKAKSIVFH--RKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPE 185
           R+  +K +V    + KN +Y++ISAK+ +NF  PFL LAR   G P+L FV+   L P E
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTE 191

Query: 186 VTMDPQWQSRIEQDLKEAQETALPDDD 212
           V  D       +      Q + +  ++
Sbjct: 192 VNYDYHSPEESKYIDYMEQASKMAPEE 218

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  230 bits (589), Expect = 6e-75
 Identities = 76/207 (36%), Positives = 99/207 (47%), Gaps = 49/207 (23%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQ 283
           +K  L+GDGG GKTT++ R L G FEK Y AT+G   HP+ F  ++G  I+FNVWDTAGQ
Sbjct: 12  YKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQ 71

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           EK   L+D YYI    AI+ FDVTSRIT +N                             
Sbjct: 72  EKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKN 131

Query: 315 -------------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPE 355
                              Y++ISAK+ +NF  PFL LAR   G P+L FV+   L P E
Sbjct: 132 RQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPTE 191

Query: 356 VTMDPQWQSRIEQDLKEAQETALPDDD 382
           V  D       +      Q + +  ++
Sbjct: 192 VNYDYHSPEESKYIDYMEQASKMAPEE 218

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  144 bits (365), Expect = 1e-41
 Identities = 56/180 (31%), Positives = 96/180 (53%), Gaps = 18/180 (10%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NR 55
           M +   +   K +++GD G GKT+ + +++  +F  +Y AT+G +     F T     + 
Sbjct: 1   MTSRKKV-LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTKEVMVDD 54

Query: 56  GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRV 110
             +   +WDTAGQE+F  L   +Y    C +++FDVT+  T+K + +W  +       R 
Sbjct: 55  RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD 114

Query: 111 CENIPIVLCGNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            EN P V+ GNK+D+++R+V  K      + K N+ Y++ SAK   N E+ F  +AR  +
Sbjct: 115 PENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 174

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 86.6 bits (215), Expect = 5e-20
 Identities = 32/104 (30%), Positives = 56/104 (53%), Gaps = 11/104 (10%)

Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NR 270
           M +   +   K +++GD G GKT+ + +++  +F  +Y AT+G +     F T     + 
Sbjct: 1   MTSRKKV-LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGAD-----FLTKEVMVDD 54

Query: 271 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
             +   +WDTAGQE+F  L   +Y    C +++FDVT+  T+K 
Sbjct: 55  RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKT 98

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  138 bits (351), Expect = 6e-40
 Identities = 52/175 (29%), Positives = 90/175 (51%), Gaps = 17/175 (9%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 64
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE     F       +   +   +WD
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE-----FLNKDLEVDGHFVTMQIWD 62

Query: 65  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCENIPIVLC 119
           TAGQE+F  LR  +Y    C ++ F V    +++N+ NW ++      V+  E+ P V+ 
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 120 GNKVDIKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN 172
           GNK+DI +R+V  +          +  Y++ SAK   N    F    R+++   +
Sbjct: 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATED 177

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 81.8 bits (203), Expect = 1e-18
 Identities = 32/95 (33%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 279
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE     F       +   +   +WD
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE-----FLNKDLEVDGHFVTMQIWD 62

Query: 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           TAGQE+F  LR  +Y    C ++ F V    +++N
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQN 97

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  136 bits (346), Expect = 3e-39
 Identities = 43/165 (26%), Positives = 79/165 (47%), Gaps = 4/165 (2%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG GG GK+    + +   F  +   T+       V          ++ DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGE-TCLLDILDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+VL GNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSD 119

Query: 125 IKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +  R V   ++    R   + Y + SAK+    E  F  L R++ 
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR 164

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 80.6 bits (200), Expect = 3e-18
 Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           M  +K V+VG GG GK+    + +   F  +   T+       V          ++ DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGE-TCLLDILDTA 59

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQE++  +RD Y   G+  + +F + +  ++++
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFED 92

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  136 bits (345), Expect = 4e-39
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 16/168 (9%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 64
            K V+VG+G  GK++ ++R+  G F K Y  T+GV+     F       N   +R  +WD
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVD-----FLERQIQVNDEDVRLMLWD 60

Query: 65  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD 124
           TAGQE+F  +   YY   Q  +++F  T R +++ + +W   +V    +IP  L  NK+D
Sbjct: 61  TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID 120

Query: 125 IKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           + D       +A+     ++  L++Y  S K + N  + F +LA K +
Sbjct: 121 LLDDSCIKNEEAEG--LAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 81.4 bits (202), Expect = 1e-18
 Identities = 40/166 (24%), Positives = 64/166 (38%), Gaps = 57/166 (34%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 279
            K V+VG+G  GK++ ++R+  G F K Y  T+GV+     F       N   +R  +WD
Sbjct: 6   IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVD-----FLERQIQVNDEDVRLMLWD 60

Query: 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------- 314
           TAGQE+F  +   YY   Q  +++F  T R +++                          
Sbjct: 61  TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID 120

Query: 315 ----------------------YYDISAKSNYNFEKPFLWLARKLI 338
                                 +Y  S K + N  + F +LA K +
Sbjct: 121 LLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 166

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  136 bits (345), Expect = 5e-39
 Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 21/174 (12%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT------NRGAIRFNVW 63
            K V++GDG +GKT+         F K+Y  T+G++     F            +   +W
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLD-----FFLRRITLPGNLNVTLQIW 61

Query: 64  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE----NIPIVLC 119
           D  GQ   G + D Y    Q  ++++D+T+  +++N+ +W+  + +V E       + L 
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 120 GNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
           GNK+D++  +     K     F ++     + +SAK+  +    F  +A +++G
Sbjct: 122 GNKIDLEHMRTIKPEKHLR--FCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 88.0 bits (219), Expect = 6e-21
 Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 11/96 (11%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT------NRGAIRFNVW 278
            K V++GDG +GKT+         F K+Y  T+G++     F            +   +W
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLD-----FFLRRITLPGNLNVTLQIW 61

Query: 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           D  GQ   G + D Y    Q  ++++D+T+  +++N
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFEN 97

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  136 bits (344), Expect = 8e-39
 Identities = 47/180 (26%), Positives = 92/180 (51%), Gaps = 15/180 (8%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAI 58
           M++       K +++GD G GKT+ + R++  ++ ++Y AT+G +     +    ++   
Sbjct: 1   MSSRKKN-ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK-VA 58

Query: 59  RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-----VRVCEN 113
              VWDTAGQE+F  L   +Y    C ++++DVT+  +++N+ +W  +      V   E 
Sbjct: 59  TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPET 118

Query: 114 IPIVLCGNKVDIKD--RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            P V+ GNK+D ++  + V    A+ +      ++  +  SAK+  N +  F  +AR  +
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELA-KSLGDIPLFLTSAKNAINVDTAFEEIARSAL 177

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 86.5 bits (215), Expect = 3e-20
 Identities = 29/101 (28%), Positives = 57/101 (56%), Gaps = 4/101 (3%)

Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAI 273
           M++       K +++GD G GKT+ + R++  ++ ++Y AT+G +     +    ++   
Sbjct: 1   MSSRKKN-ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDK-VA 58

Query: 274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
              VWDTAGQE+F  L   +Y    C ++++DVT+  +++N
Sbjct: 59  TMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFEN 99

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  135 bits (341), Expect = 3e-38
 Identities = 42/165 (25%), Positives = 79/165 (47%), Gaps = 4/165 (2%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG GG GK+    + +   F  +Y  T+       V          ++ DTA
Sbjct: 19  MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTA 77

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  ++ ++  +   + RV   +++P+VL GNK D
Sbjct: 78  GQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCD 137

Query: 125 IKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +  R V   ++    +   + + + SAK+    E  F  L R++ 
Sbjct: 138 LPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 79.2 bits (196), Expect = 1e-17
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           M  +K V+VG GG GK+    + +   F  +Y  T+       V          ++ DTA
Sbjct: 19  MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTA 77

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQE++  +RD Y   G+  + +F + +  ++ +
Sbjct: 78  GQEEYSAMRDQYMRTGEGFLCVFAINNSKSFAD 110

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  133 bits (338), Expect = 5e-38
 Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 11/174 (6%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAI 58
           MA + D   FK +++GD G GK++ + R     F   Y+ T+GV+  +  +  +  +  +
Sbjct: 2   MARDYDH-LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEK--V 58

Query: 59  RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVL 118
           +  +WDTAGQE+F  +   YY      I+++DVTS  ++ NV  W  ++ + C+++  +L
Sbjct: 59  KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRIL 118

Query: 119 CGNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            GNK D  +RKV     A    F  +  +Q ++ SAK N N E+ F  +   ++
Sbjct: 119 VGNKNDDPERKVVETEDAYK--FAGQMGIQLFETSAKENVNVEEMFNCITELVL 170

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 79.5 bits (197), Expect = 8e-18
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAI 273
           MA + D   FK +++GD G GK++ + R     F   Y+ T+GV+  +  +  +  +  +
Sbjct: 2   MARDYDH-LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEK--V 58

Query: 274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  +WDTAGQE+F  +   YY      I+++DVTS  ++ N
Sbjct: 59  KLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVN 99

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  132 bits (335), Expect = 2e-37
 Identities = 47/166 (28%), Positives = 85/166 (51%), Gaps = 5/166 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +   K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTA
Sbjct: 16  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTA 74

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D
Sbjct: 75  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 134

Query: 125 IKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           ++D R+V   ++     + N+ Y + SAK+  N +K F  L R++ 
Sbjct: 135 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 180

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 80.7 bits (200), Expect = 4e-18
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           +   K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTA
Sbjct: 16  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTA 74

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQE +  +RD Y+  G+  + +F +T   ++  
Sbjct: 75  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAA 107

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  132 bits (335), Expect = 2e-37
 Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 4/162 (2%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           +K V+VG  G GK+    + +   F  +Y  T+       V          ++ DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQE 63

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 127
           ++  +RD Y   G+  + +F + +  +++++ ++   + RV   E++P+VL GNK D+  
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123

Query: 128 RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R V   ++    R   + + + SAK+    +  F  L R++ 
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K V+VG  G GK+    + +   F  +Y  T+       V          ++ DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGE-TCLLDILDTAGQE 63

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +RD Y   G+  + +F + +  ++++
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFED 93

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  133 bits (336), Expect = 2e-37
 Identities = 43/170 (25%), Positives = 81/170 (47%), Gaps = 9/170 (5%)

Query: 7   MPS----FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNV 62
           MP     ++ V+ G GG GK++ V R + G F   Y+ T+      ++           +
Sbjct: 2   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKS-VCTLQI 60

Query: 63  WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLC 119
            DT G  +F  ++     +G   I++F VTS+ + + +   ++ +V++    E+IP++L 
Sbjct: 61  TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLV 120

Query: 120 GNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           GNK D   R+V   ++    ++    + + SAK NYN ++ F  L     
Sbjct: 121 GNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET 170

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 78.0 bits (193), Expect = 5e-17
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%)

Query: 222 MPS----FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNV 277
           MP     ++ V+ G GG GK++ V R + G F   Y+ T+      ++           +
Sbjct: 2   MPEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKS-VCTLQI 60

Query: 278 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            DT G  +F  ++     +G   I++F VTS+ + + 
Sbjct: 61  TDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEE 97

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  131 bits (333), Expect = 3e-37
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +   K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTA
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTA 60

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D
Sbjct: 61  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120

Query: 125 IKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           ++D R+V   ++     + N+ Y + SAK+  N +K F  L R
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 79.1 bits (196), Expect = 9e-18
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           +   K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTA
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTA 60

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQE +  +RD Y+  G+  + +F +T   ++  
Sbjct: 61  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAA 93

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  131 bits (332), Expect = 3e-37
 Identities = 54/164 (32%), Positives = 89/164 (54%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+G  GKT+ V R+   +F  K++ TLG        +     +   +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKD- 127
           +F  L   YY     AI+++D+T   +++ V NW ++L ++    I + + GNK+D++  
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126

Query: 128 RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           R V    A+S  +      ++Y  SAK N   E+ FL L +++I
Sbjct: 127 RHVSIQEAES--YAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 168

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 83.7 bits (208), Expect = 2e-19
 Identities = 31/90 (34%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+G  GKT+ V R+   +F  K++ TLG        +     +   +WDTAGQE
Sbjct: 7   FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  L   YY     AI+++D+T   +++ 
Sbjct: 67  RFHALGPIYYRDSNGAILVYDITDEDSFQK 96

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  131 bits (333), Expect = 6e-37
 Identities = 36/165 (21%), Positives = 75/165 (45%), Gaps = 5/165 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +   K V++G    GKT+   + + GEF + Y  T+      +V          ++ DTA
Sbjct: 22  VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKD-EFHLHLVDTA 80

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQ+++  L   + I     ++++ VTS  +++ + + ++ L        +P+VL GNK D
Sbjct: 81  GQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKAD 140

Query: 125 IKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +   R+V   +           + + SA+ N   +  F  + +++
Sbjct: 141 LSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 80.7 bits (200), Expect = 5e-18
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           +   K V++G    GKT+   + + GEF + Y  T+      +V          ++ DTA
Sbjct: 22  VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKD-EFHLHLVDTA 80

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQ+++  L   + I     ++++ VTS  +++ 
Sbjct: 81  GQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQV 113

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  132 bits (333), Expect = 7e-37
 Identities = 47/178 (26%), Positives = 89/178 (50%), Gaps = 11/178 (6%)

Query: 1   MAAEMDMPS----FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 56
           M+   D  +    FK V +G+   GKT+ + R +   F+  Y AT+G++      +    
Sbjct: 4   MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 63

Query: 57  AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIP 115
            +R  +WDTAG E+F  L   Y      A++++D+T+  +++    W  D+      ++ 
Sbjct: 64  TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI 123

Query: 116 IVLCGNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
           I+L GNK D+ D++     + +     ++ N+ + + SAK+ YN ++ F  +A  L G
Sbjct: 124 IMLVGNKTDLADKRQVSIEEGER--KAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 84.3 bits (209), Expect = 3e-19
 Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 4/103 (3%)

Query: 216 MAAEMDMPS----FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 271
           M+   D  +    FK V +G+   GKT+ + R +   F+  Y AT+G++      +    
Sbjct: 4   MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 63

Query: 272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +R  +WDTAG E+F  L   Y      A++++D+T+  +++ 
Sbjct: 64  TVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQ 106

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  130 bits (329), Expect = 1e-36
 Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 7/164 (4%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
            FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQ
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKD 127
           E++  L   YY   Q AI+++D+T+  ++    NW ++L R    NI I L GNK D+ +
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLAN 125

Query: 128 -RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
            R V    A+S  +    +L + + SAK++ N  + F+ +A+KL
Sbjct: 126 KRAVDFQEAQS--YADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 81.8 bits (203), Expect = 1e-18
 Identities = 29/91 (31%), Positives = 51/91 (56%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
            FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTAGQ
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 65

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E++  L   YY   Q AI+++D+T+  ++  
Sbjct: 66  ERYHSLAPMYYRGAQAAIVVYDITNEESFAR 96

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  129 bits (328), Expect = 1e-36
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 5/161 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +LVG+ G GK+T        + +  +      + +      ++  +   V+D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62

Query: 70  KFGG-LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 126
             GG L+D     G   +I+F VT R ++  VP     L       ++P++L GNK D+ 
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 122

Query: 127 D-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
             R+V   +        + ++ + SA  ++N  + F    R
Sbjct: 123 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 77.6 bits (192), Expect = 3e-17
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +LVG+ G GK+T        + +  +      + +      ++  +   V+D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62

Query: 285 KFGG-LRDGYYIQGQCAIIMFDVTSRITYKN 314
             GG L+D     G   +I+F VT R ++  
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSK 93

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  129 bits (328), Expect = 2e-36
 Identities = 48/165 (29%), Positives = 85/165 (51%), Gaps = 7/165 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKD- 127
           +F  L   Y      A++++D+T+  ++     W  D+      ++ I+L GNK D+ D 
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134

Query: 128 RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
           R+V     +     ++ N+ + + SAK+ YN ++ F  +A  L G
Sbjct: 135 RQVSTEEGER--KAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 82.6 bits (205), Expect = 7e-19
 Identities = 36/163 (22%), Positives = 63/163 (38%), Gaps = 48/163 (29%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     +R  +WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           +F  L   Y      A++++D+T+  ++                                
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134

Query: 315 ------------------YYDISAKSNYNFEKPFLWLARKLIG 339
                             + + SAK+ YN ++ F  +A  L G
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  129 bits (327), Expect = 2e-36
 Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 8/168 (4%)

Query: 7   MP---SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 63
           MP   S K  ++G    GK++   + + G+F   Y  T+      L+    +      + 
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQ-EYHLQLV 59

Query: 64  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGN 121
           DTAGQ+++      Y I     I+++ VTS  +++ +   H  L+ +     IPI+L GN
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119

Query: 122 KVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           K D+   R +   +        N  + + SAK N      F  +  + 
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 77.2 bits (191), Expect = 6e-17
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 4/96 (4%)

Query: 222 MP---SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 278
           MP   S K  ++G    GK++   + + G+F   Y  T+      L+    +      + 
Sbjct: 1   MPQSKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQ-EYHLQLV 59

Query: 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           DTAGQ+++      Y I     I+++ VTS  +++ 
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEV 95

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  129 bits (326), Expect = 2e-36
 Identities = 42/163 (25%), Positives = 83/163 (50%), Gaps = 6/163 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++D+T   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123

Query: 129 KVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            V     ++    ++  + + + SAK++ N  + F  LA+ + 
Sbjct: 124 VVTADQGEA--LAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 164

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 78.4 bits (194), Expect = 2e-17
 Identities = 27/90 (30%), Positives = 48/90 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++D+T   T+ N
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTN 93

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  130 bits (328), Expect = 2e-36
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 5/161 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +LVG+ G GK+T        + +  +      + +      ++  +   V+D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83

Query: 70  KFGG-LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 126
             GG LRD     G   +I+F VT R ++  VP     L       ++P++L GNK D+ 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA 143

Query: 127 D-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
             R+V   +        + ++ + SA  ++N  + F    R
Sbjct: 144 RSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 77.6 bits (192), Expect = 4e-17
 Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +LVG+ G GK+T        + +  +      + +      ++  +   V+D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83

Query: 285 KFGG-LRDGYYIQGQCAIIMFDVTSRITYKN 314
             GG LRD     G   +I+F VT R ++  
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSK 114

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  130 bits (328), Expect = 2e-36
 Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 17/177 (9%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NR 55
           +     +   K  L+GD G GK++ V R +   F+     T+G       F T       
Sbjct: 15  VPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGN 69

Query: 56  GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENI 114
              +F +WDTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI
Sbjct: 70  ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENI 129

Query: 115 PIVLCGNKVDIKD-RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
            + + GNK D+ D R+V    AK   +         + SAK+  N E+ F  ++R++
Sbjct: 130 VMAIAGNKCDLSDIREVPLKDAKE--YAESIGAIVVETSAKNAINIEELFQGISRQI 184

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 83.4 bits (207), Expect = 5e-19
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 10/105 (9%)

Query: 215 LMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----N 269
           L+     +   K  L+GD G GK++ V R +   F+     T+G       F T      
Sbjct: 14  LVPRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCG 68

Query: 270 RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
               +F +WDTAGQE+F  L   YY     A+I++D+T + ++  
Sbjct: 69  NELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYT 113

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  130 bits (330), Expect = 3e-36
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 18/175 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE----------VHPLVFHTNRGAIR 59
            K + +GD G GKTTF+ R+   +F  K++ T+G++            P         + 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIV 117
             +WDTAGQE+F  L   ++      ++MFD+TS+ ++ NV NW   L     CEN  IV
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145

Query: 118 LCGNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           L GNK D+ D++     +A+      K  + Y++ SA +  N EK    L   ++
Sbjct: 146 LIGNKADLPDQREVNERQARE--LADKYGIPYFETSAATGQNVEKAVETLLDLIM 198

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 79.3 bits (196), Expect = 2e-17
 Identities = 30/100 (30%), Positives = 51/100 (51%), Gaps = 10/100 (10%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE----------VHPLVFHTNRGAIR 274
            K + +GD G GKTTF+ R+   +F  K++ T+G++            P         + 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
             +WDTAGQE+F  L   ++      ++MFD+TS+ ++ N
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLN 125

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  130 bits (328), Expect = 3e-36
 Identities = 47/163 (28%), Positives = 83/163 (50%), Gaps = 5/163 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +   K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTA
Sbjct: 12  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTA 70

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D
Sbjct: 71  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 130

Query: 125 IKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           ++D R+V   ++     + N+ Y + SAK+  N +K F  L R
Sbjct: 131 LEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 173

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           +   K ++VG GG GK+    + +  EF + Y  T        V       ++ ++ DTA
Sbjct: 12  LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGE-EVQIDILDTA 70

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQE +  +RD Y+  G+  + +F +T   ++  
Sbjct: 71  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAA 103

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  129 bits (326), Expect = 4e-36
 Identities = 47/171 (27%), Positives = 84/171 (49%), Gaps = 6/171 (3%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           M       + K V+VG GG GK+    + +   F   Y  T+      +         R 
Sbjct: 2   MDPPPSE-THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGI-PARL 59

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVL 118
           ++ DTAGQE+FG +R+ Y   G   +++F +  R ++  V      ++RV   ++ P+VL
Sbjct: 60  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVL 119

Query: 119 CGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
            GNK D++  R+V ++++  F    ++ Y++ SAK   N ++ F  L R +
Sbjct: 120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 75.6 bits (187), Expect = 2e-16
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 275
           M       + K V+VG GG GK+    + +   F   Y  T+      +         R 
Sbjct: 2   MDPPPSE-THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGI-PARL 59

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++ DTAGQE+FG +R+ Y   G   +++F +  R ++  
Sbjct: 60  DILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNE 98

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  128 bits (325), Expect = 4e-36
 Identities = 46/169 (27%), Positives = 86/169 (50%), Gaps = 17/169 (10%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRF 60
           M  +K V++G GG GK+    + +TG F +KY  T+       +EV       +      
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEV-------DSSPSVL 53

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVL 118
            + DTAG E+F  +RD Y   GQ  I+++ + ++ +++++      ++RV   E +P++L
Sbjct: 54  EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVIL 113

Query: 119 CGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
            GNKVD++  R+V  ++      +    + + SAKS    ++ F  + R
Sbjct: 114 VGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 76.7 bits (190), Expect = 6e-17
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 13/99 (13%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRF 275
           M  +K V++G GG GK+    + +TG F +KY  T+       +EV       +      
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEV-------DSSPSVL 53

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            + DTAG E+F  +RD Y   GQ  I+++ + ++ ++++
Sbjct: 54  EILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQD 92

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  128 bits (325), Expect = 4e-36
 Identities = 55/168 (32%), Positives = 92/168 (54%), Gaps = 17/168 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 64
            K VL+GD G GK++ V R +  +F +   +T+G       F +     N   ++F +WD
Sbjct: 13  AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA-----FFSQTLAVNDATVKFEIWD 67

Query: 65  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKV 123
           TAGQE++  L   YY     AII+FDVT++ +++    W ++L      N+ + L GNK 
Sbjct: 68  TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 127

Query: 124 DIKD-RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           D+ D RKV    A++  + ++  L + + SAK+  N ++ F  +AR+L
Sbjct: 128 DLLDARKVTAEDAQT--YAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 80.3 bits (199), Expect = 4e-18
 Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 10/95 (10%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 279
            K VL+GD G GK++ V R +  +F +   +T+G       F +     N   ++F +WD
Sbjct: 13  AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA-----FFSQTLAVNDATVKFEIWD 67

Query: 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           TAGQE++  L   YY     AII+FDVT++ +++ 
Sbjct: 68  TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFER 102

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  129 bits (326), Expect = 4e-36
 Identities = 44/166 (26%), Positives = 86/166 (51%), Gaps = 11/166 (6%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 67
           FK +++G+   GKT+F+ R+    F   +V+T+G++  V  +  H  R  ++  +WDTAG
Sbjct: 24  FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR--VKLQIWDTAG 81

Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIK 126
           QE++  +   YY      I+M+D+T+  ++  V +W   +     +N  ++L GNK D++
Sbjct: 82  QERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME 141

Query: 127 DRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           + +V    K +      +    +++ SAK N +  + F  L   + 
Sbjct: 142 EERVVPTEKGQL--LAEQLGFDFFEASAKENISVRQAFERLVDAIC 185

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 79.6 bits (197), Expect = 1e-17
 Identities = 31/119 (26%), Positives = 58/119 (48%), Gaps = 12/119 (10%)

Query: 198 QDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 257
                 +E      + D M        FK +++G+   GKT+F+ R+    F   +V+T+
Sbjct: 5   HHHSSGRENLYFQGNFDYM--------FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTV 56

Query: 258 GVE--VHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           G++  V  +  H  R  ++  +WDTAGQE++  +   YY      I+M+D+T+  ++  
Sbjct: 57  GIDFKVKTVYRHEKR--VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNA 113

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  129 bits (327), Expect = 5e-36
 Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 43/199 (21%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE------------------------ 45
           +K VL+G+   GK++ V R     F +    T+G                          
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67

Query: 46  -------------VHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 92
                             ++ N   I+F++WDTAGQE++  +   YY    CAI++FD++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127

Query: 93  SRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK---AKSIVFHRKKNLQYYDIS 149
           +  T      W   L ++  N  I+L  NK+D    +V     +   + +  NL +   S
Sbjct: 128 NSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQK--YAQDNNLLFIQTS 184

Query: 150 AKSNYNFEKPFLWLARKLI 168
           AK+  N +  F  LA ++ 
Sbjct: 185 AKTGTNIKNIFYMLAEEIY 203

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 77.2 bits (190), Expect = 1e-16
 Identities = 36/196 (18%), Positives = 61/196 (31%), Gaps = 82/196 (41%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE------------------------ 260
           +K VL+G+   GK++ V R     F +    T+G                          
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67

Query: 261 -------------VHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 307
                             ++ N   I+F++WDTAGQE++  +   YY    CAI++FD++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127

Query: 308 SRITYKN---------------------------------------------YYDISAKS 322
           +  T                                                +   SAK+
Sbjct: 128 NSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKT 187

Query: 323 NYNFEKPFLWLARKLI 338
             N +  F  LA ++ 
Sbjct: 188 GTNIKNIFYMLAEEIY 203

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  129 bits (327), Expect = 5e-36
 Identities = 42/165 (25%), Positives = 87/165 (52%), Gaps = 10/165 (6%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 67
            K +L+GD G GK+  + R +  +F   ++ T+G++  +  +  +  +  ++  +WDTAG
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK--VKLQLWDTAG 78

Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIK 126
           QE+F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D++
Sbjct: 79  QERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138

Query: 127 DRKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            R V   + ++    ++  + + + SAK++ N  + F  LA+ + 
Sbjct: 139 TRVVTADQGEA--LAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 4/92 (4%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 282
            K +L+GD G GK+  + R +  +F   ++ T+G++  +  +  +  +  ++  +WDTAG
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKK--VKLQLWDTAG 78

Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           QE+F  +   YY      I+++DVT   T+ N
Sbjct: 79  QERFRTITTAYYRGAMGIILVYDVTDERTFTN 110

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  128 bits (324), Expect = 5e-36
 Identities = 50/172 (29%), Positives = 84/172 (48%), Gaps = 17/172 (9%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFN 61
           +   K  L+GD G GK++ + R +   F+     T+G       F T          +F 
Sbjct: 4   LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGAS-----FMTKTVQYQNELHKFL 58

Query: 62  VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCG 120
           +WDTAG E+F  L   YY     AII++D+T   T+  + NW R+L +    +I + + G
Sbjct: 59  IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAG 118

Query: 121 NKVDIKD-RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           NK D+ D R+V    AK   +    +  + + SAK+  N  + F+ ++R++ 
Sbjct: 119 NKCDLTDVREVMERDAKD--YADSIHAIFVETSAKNAININELFIEISRRIP 168

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 81.4 bits (202), Expect = 1e-18
 Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 10/98 (10%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFN 276
           +   K  L+GD G GK++ + R +   F+     T+G       F T          +F 
Sbjct: 4   LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGAS-----FMTKTVQYQNELHKFL 58

Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +WDTAG E+F  L   YY     AII++D+T   T+  
Sbjct: 59  IWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFST 96

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  129 bits (326), Expect = 6e-36
 Identities = 49/175 (28%), Positives = 85/175 (48%), Gaps = 18/175 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE---------VHPLVFHTNRG-AIR 59
            K + +GD G GKT+ + ++  G+F  K++ T+G++          +       RG  I 
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIV 117
             +WDTAG E+F  L   ++      +++FD+T+  ++ NV NW   L      EN  IV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131

Query: 118 LCGNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           LCGNK D++D++     +A+      K  + Y++ SA +  N       L   ++
Sbjct: 132 LCGNKSDLEDQRAVKEEEARE--LAEKYGIPYFETSAANGTNISHAIEMLLDLIM 184

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 77.7 bits (192), Expect = 5e-17
 Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 10/100 (10%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE---------VHPLVFHTNRG-AIR 274
            K + +GD G GKT+ + ++  G+F  K++ T+G++          +       RG  I 
Sbjct: 12  IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
             +WDTAG E+F  L   ++      +++FD+T+  ++ N
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLN 111

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  128 bits (325), Expect = 6e-36
 Identities = 45/166 (27%), Positives = 86/166 (51%), Gaps = 11/166 (6%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 67
           FK +L+G+   GKT+F+ R+    F   +V+T+G++  V  +  H  R  I+  +WDTAG
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR--IKLQIWDTAG 80

Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIK 126
           QE++  +   YY      ++M+D+ ++ ++  V +W   +     +N  ++L GNK D++
Sbjct: 81  QERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE 140

Query: 127 DRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           D +V      +          ++++ SAK N N ++ F  L   + 
Sbjct: 141 DERVVPAEDGRR--LADDLGFEFFEASAKENINVKQVFERLVDVIC 184

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 79.2 bits (196), Expect = 1e-17
 Identities = 28/92 (30%), Positives = 53/92 (57%), Gaps = 4/92 (4%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAG 282
           FK +L+G+   GKT+F+ R+    F   +V+T+G++  V  +  H  R  I+  +WDTAG
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR--IKLQIWDTAG 80

Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           QE++  +   YY      ++M+D+ ++ ++  
Sbjct: 81  QERYRTITTAYYRGAMGFLLMYDIANQESFAA 112

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  128 bits (324), Expect = 7e-36
 Identities = 52/164 (31%), Positives = 91/164 (55%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           +F  +   YY     A++++D+TSR TY  + NW  D   +  +NI I+LCGNK D+   
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +     +A    F ++  L + + SA +  N E+ F+  ARK++
Sbjct: 131 REVTFLEASR--FAQENELMFLETSALTGENVEEAFVQCARKIL 172

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 80.3 bits (199), Expect = 5e-18
 Identities = 29/90 (32%), Positives = 52/90 (57%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAGQE
Sbjct: 11  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 70

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY     A++++D+TSR TY  
Sbjct: 71  RFRSVTRSYYRGAAGALLVYDITSRETYNA 100

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  127 bits (323), Expect = 7e-36
 Identities = 48/165 (29%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V++G GG GK+    + + G F +KY  T+       V    +      + DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQ-QCMLEILDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           G E+F  +RD Y   GQ   +++ +T++ T+ ++ +    ++RV   E++P++L GNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119

Query: 125 IKD-RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           ++D R V   + +++   +  N  + + SAKS  N  + F  L R
Sbjct: 120 LEDERVVGKEQGQNLA-RQWCNCAFLESSAKSKINVNEIFYDLVR 163

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 78.7 bits (195), Expect = 1e-17
 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           M  +K V++G GG GK+    + + G F +KY  T+       V    +      + DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQ-QCMLEILDTA 59

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           G E+F  +RD Y   GQ   +++ +T++ T+ +
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFND 92

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  128 bits (325), Expect = 8e-36
 Identities = 56/164 (34%), Positives = 89/164 (54%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+ G GKT  V+R   G F     AT+GV+        N   ++  +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+ +D+T   +++ +P W R++ +     +  VL GNK+D+ +R
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +     +A+   F   +++ Y + SAK + N EK FL LA +LI
Sbjct: 147 REVSQQRAEE--FSEAQDMYYLETSAKESDNVEKLFLDLACRLI 188

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 79.6 bits (197), Expect = 1e-17
 Identities = 31/90 (34%), Positives = 47/90 (52%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+ G GKT  V+R   G F     AT+GV+        N   ++  +WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+ +D+T   +++ 
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRC 116

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  128 bits (323), Expect = 8e-36
 Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 6/161 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           ++  + G GG GK++ V R + G F + Y+ T+      ++           + DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS-ICTLQITDTTGSH 62

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIK 126
           +F  ++     +G   I+++ +TSR + + +   +  +  +    E+IPI+L GNK D  
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122

Query: 127 D-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
             R+V  +++    R     + + SAK N+N ++ F  L  
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 76.8 bits (190), Expect = 6e-17
 Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           ++  + G GG GK++ V R + G F + Y+ T+      ++           + DT G  
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKS-ICTLQITDTTGSH 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  ++     +G   I+++ +TSR + + 
Sbjct: 63  QFPAMQRLSISKGHAFILVYSITSRQSLEE 92

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  128 bits (325), Expect = 9e-36
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L      NI I+L GNK D++  
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A++  F  K NL + + SA  + N E+ F  +  ++
Sbjct: 126 RAVPTDEARA--FAEKNNLSFIETSALDSTNVEEAFKNILTEI 166

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYEN 95

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  128 bits (324), Expect = 1e-35
 Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G  GTGK+  + + +  +F++    T+GVE    V +     ++  +WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           +F  +   YY     A++++D+TSR TY ++  W  D   +   NI ++LCGNK D+   
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +     +A    F ++  L + + SA +  N E+ FL  AR ++
Sbjct: 146 REVTFLEASR--FAQENELMFLETSALTGENVEEAFLKCARTIL 187

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 80.4 bits (199), Expect = 6e-18
 Identities = 30/90 (33%), Positives = 53/90 (58%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G  GTGK+  + + +  +F++    T+GVE    V +     ++  +WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY     A++++D+TSR TY +
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNS 115

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  128 bits (324), Expect = 1e-35
 Identities = 43/164 (26%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           ++  +   YY      I+M+D+T+  ++  V +W   +     +N  ++L GNK D++D 
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 128

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +V    + +          ++++ SAK N N ++ F  L   + 
Sbjct: 129 RVVSSERGRQ--LADHLGFEFFEASAKDNINVKQTFERLVDVIC 170

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 78.8 bits (195), Expect = 3e-17
 Identities = 26/90 (28%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY      I+M+D+T+  ++  
Sbjct: 69  RYRTITTAYYRGAMGFILMYDITNEESFNA 98

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  127 bits (322), Expect = 1e-35
 Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +     +AK   F  +  L + + SAK+  N E  FL  A+K+ 
Sbjct: 136 RDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKIY 177

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 80.3 bits (199), Expect = 4e-18
 Identities = 29/90 (32%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY     A++++D+T R TY +
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNH 105

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  127 bits (322), Expect = 1e-35
 Identities = 48/173 (27%), Positives = 88/173 (50%), Gaps = 8/173 (4%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA   D   FK +L+GD G GKT  + R     F   +++T+G++        +   I+ 
Sbjct: 1   MAKTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKL 59

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLC 119
            +WDTAGQE+F  +   YY      ++++D+T+  ++ N+ NW R++      ++  ++ 
Sbjct: 60  QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL 119

Query: 120 GNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           GNK D+ D++     + +         +++ + SAK+N N E  F  LAR + 
Sbjct: 120 GNKCDVNDKRQVSKERGEK--LALDYGIKFMETSAKANINVENAFFTLARDIK 170

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 79.2 bits (196), Expect = 1e-17
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 275
           MA   D   FK +L+GD G GKT  + R     F   +++T+G++        +   I+ 
Sbjct: 1   MAKTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKL 59

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAGQE+F  +   YY      ++++D+T+  ++ N
Sbjct: 60  QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDN 98

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  128 bits (323), Expect = 1e-35
 Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 7/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L      NI I+L GNK D++  
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +     +A++  F  K  L + + SA  + N E  F  +  ++
Sbjct: 150 RAVPTDEARA--FAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 80.3 bits (199), Expect = 5e-18
 Identities = 30/90 (33%), Positives = 49/90 (54%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A++++D+   +TY+N
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYEN 119

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  127 bits (322), Expect = 2e-35
 Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +     F+  +  T+GVE    + + +   I+  +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D++ R
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +     + ++  F R+  L + + SAK+  N E+ F+  A+++ 
Sbjct: 142 RDVKREEGEA--FAREHGLIFMETSAKTACNVEEAFINTAKEIY 183

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 78.8 bits (195), Expect = 2e-17
 Identities = 28/90 (31%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +     F+  +  T+GVE    + + +   I+  +WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            F  +   YY     A++++D+T R T+ +
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNH 111

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  127 bits (322), Expect = 2e-35
 Identities = 48/164 (29%), Positives = 77/164 (46%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+ G GKT  + R    EF      T+GVE           A++  +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           ++  +   YY     A+++FD+T   TY  V  W ++L       I ++L GNK D+   
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +     +A+   F     L + + SA  + N E  F  + +++ 
Sbjct: 146 REVPTEEARM--FAENNGLLFLETSALDSTNVELAFETVLKEIF 187

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 80.7 bits (200), Expect = 4e-18
 Identities = 31/90 (34%), Positives = 45/90 (50%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+ G GKT  + R    EF      T+GVE           A++  +WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A+++FD+T   TY  
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAV 115

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  128 bits (323), Expect = 2e-35
 Identities = 52/173 (30%), Positives = 89/173 (51%), Gaps = 8/173 (4%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           M +E D   FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++ 
Sbjct: 1   MNSEYDY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKL 59

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLC 119
            +WDTAGQE+F  +   YY      II++DVT + ++  V  W +++ R     +  +L 
Sbjct: 60  QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLV 119

Query: 120 GNKVDIKDRKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           GNK D+KD++V     AK   F     + + + SA  + N E  FL +AR++ 
Sbjct: 120 GNKCDLKDKRVVEYDVAKE--FADANKMPFLETSALDSTNVEDAFLTMARQIK 170

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 80.0 bits (198), Expect = 9e-18
 Identities = 30/99 (30%), Positives = 52/99 (52%), Gaps = 1/99 (1%)

Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 275
           M +E D   FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++ 
Sbjct: 1   MNSEYDY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKL 59

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAGQE+F  +   YY      II++DVT + ++  
Sbjct: 60  QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNG 98

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  127 bits (322), Expect = 2e-35
 Identities = 53/169 (31%), Positives = 88/169 (52%), Gaps = 7/169 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +++G+ G GK++ + R     F+ +  AT+GV+        +    +  +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKD 127
           +F  L   YY   Q  I+++DVT R T+  + NW  +L   C   +I  +L GNK+D ++
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135

Query: 128 RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 173
           R+V   +     F RK ++ + + SAK+    +  F  L  K+I  P L
Sbjct: 136 REVDRNEGLK--FARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 182

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 80.0 bits (198), Expect = 9e-18
 Identities = 29/90 (32%), Positives = 48/90 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +++G+ G GK++ + R     F+ +  AT+GV+        +    +  +WDTAGQE
Sbjct: 16  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 75

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  L   YY   Q  I+++DVT R T+  
Sbjct: 76  RFRTLTPSYYRGAQGVILVYDVTRRDTFVK 105

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  127 bits (322), Expect = 2e-35
 Identities = 49/170 (28%), Positives = 79/170 (46%), Gaps = 13/170 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           +K VL GD   GK++F+ R    EF +   ATLGV+        +       +WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKD- 127
           +F  +   Y+ +    ++++DVT   ++ N+  W   +     E +PI+L GNK DI+D 
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148

Query: 128 ------RKVK---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
                 + V     +           + + SAK   N  +  L LAR++ 
Sbjct: 149 AATEGQKCVPGHFGEK--LAMTYGALFCETSAKDGSNIVEAVLHLAREVK 196

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 80.0 bits (198), Expect = 7e-18
 Identities = 29/90 (32%), Positives = 47/90 (52%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K VL GD   GK++F+ R    EF +   ATLGV+        +       +WDTAGQE
Sbjct: 29  YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE 88

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   Y+ +    ++++DVT   ++ N
Sbjct: 89  RFRSIAKSYFRKADGVLLLYDVTCEKSFLN 118

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  126 bits (320), Expect = 3e-35
 Identities = 53/170 (31%), Positives = 87/170 (51%), Gaps = 18/170 (10%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRF 60
           +P++K V+VGDGG GK+    +     F   Y  T+        E+       +      
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEI-------DNQWAIL 68

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVL 118
           +V DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ ++RV   E+ P++L
Sbjct: 69  DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMIL 128

Query: 119 CGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSN-YNFEKPFLWLAR 165
             NKVD+   RKV + +      K N+ Y + SAK    N +K F  L R
Sbjct: 129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 78.7 bits (195), Expect = 2e-17
 Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 13/99 (13%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRF 275
           +P++K V+VGDGG GK+    +     F   Y  T+        E+       +      
Sbjct: 16  LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEI-------DNQWAIL 68

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +V DTAGQE+F  +R+ Y   G   +I++ VT + ++++
Sbjct: 69  DVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEH 107

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  125 bits (316), Expect = 1e-34
 Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           KV     AK   F     + + + SAK+  N E+ F+ +A ++ 
Sbjct: 154 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 80.0 bits (198), Expect = 8e-18
 Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 193 QSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK 252
            S  E    + +  +  + + D +        FK +L+GD G GK+  + R     + + 
Sbjct: 10  HSSGENLYFQGRPMSSMNPEYDYL--------FKLLLIGDSGVGKSCLLLRFADDTYTES 61

Query: 253 YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITY 312
           Y++T+GV+        +   I+  +WDTAGQE+F  +   YY      I+++DVT + ++
Sbjct: 62  YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 121

Query: 313 KN 314
            N
Sbjct: 122 NN 123

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  125 bits (315), Expect = 2e-34
 Identities = 51/164 (31%), Positives = 88/164 (53%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           KV     AK   F     + + + SAK+  N E+ F+ +A ++ 
Sbjct: 137 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 77.7 bits (192), Expect = 5e-17
 Identities = 29/90 (32%), Positives = 50/90 (55%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GK+  + R     + + Y++T+GV+        +   I+  +WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY      I+++DVT + ++ N
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNN 106

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  124 bits (314), Expect = 4e-34
 Identities = 41/187 (21%), Positives = 72/187 (38%), Gaps = 29/187 (15%)

Query: 4   EMDMPS---FKCVLVGDGGTGKTTFVKR--HLTGEFEKKYVATLGVEVHPLVFHT----- 53
            +D+ +    K  +VG+   GK+  +        +F K Y  T GVE             
Sbjct: 12  PIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVE-----VVVAPVTI 66

Query: 54  NRGAIRFNVW--DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC 111
               +   ++  DTAG + +      Y+     AI++FDV+S  ++++   W   L    
Sbjct: 67  PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSAR 126

Query: 112 ----ENIPIVLCGNKVDIKD-RKV----KAKSIVFHRKKNLQYYDISAK-SNYNFEKPFL 161
                 +  VL  NK D+   R       A+   +     L ++D+SA     + + PFL
Sbjct: 127 PDRERPLRAVLVANKTDLPPQRHQVRLDMAQD--WATTNTLDFFDVSANPPGKDADAPFL 184

Query: 162 WLARKLI 168
            +A    
Sbjct: 185 SIATTFY 191

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 76.9 bits (190), Expect = 1e-16
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 17/108 (15%)

Query: 219 EMDMPS---FKCVLVGDGGTGKTTFVKR--HLTGEFEKKYVATLGVEVHPLVFHT----- 268
            +D+ +    K  +VG+   GK+  +        +F K Y  T GVE             
Sbjct: 12  PIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVE-----VVVAPVTI 66

Query: 269 NRGAIRFNVW--DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
               +   ++  DTAG + +      Y+     AI++FDV+S  ++++
Sbjct: 67  PDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFES 114

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  124 bits (314), Expect = 5e-34
 Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF     +T+GVE            I+  +WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           ++  +   YY     A+I++D++   +Y+N  +W  +L     +N+ + L GNK D+   
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +     ++K+  F ++  L + + SA ++ N +K F  L   + 
Sbjct: 134 RAVPTEESKT--FAQENQLLFTETSALNSENVDKAFEELINTIY 175

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 80.1 bits (198), Expect = 1e-17
 Identities = 31/90 (34%), Positives = 48/90 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF     +T+GVE            I+  +WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           ++  +   YY     A+I++D++   +Y+N
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYEN 103

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  123 bits (311), Expect = 5e-34
 Identities = 46/165 (27%), Positives = 86/165 (52%), Gaps = 8/165 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           FK +LVGD G GKT  + R   G F    +++T+G++    V   +   ++  +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKD 127
           E+F  +   YY      ++++DVT++ ++ N+  W  ++      ++ ++L GNKVD   
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130

Query: 128 RKV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            +V      +     ++  L + + SAK+  N +  F  +A++L 
Sbjct: 131 ERVVKREDGEK--LAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 74.5 bits (184), Expect = 4e-16
 Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 1/91 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           FK +LVGD G GKT  + R   G F    +++T+G++    V   +   ++  +WDTAGQ
Sbjct: 11  FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ 70

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E+F  +   YY      ++++DVT++ ++ N
Sbjct: 71  ERFRSVTHAYYRDAHALLLLYDVTNKASFDN 101

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  123 bits (312), Expect = 6e-34
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 8/165 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VLVGD   GKT  V+R  TG F ++  +T+GV+            ++  +WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY     AI+ +D+T R ++ +VP+W  D+ +    NI  +L GNK D+ + 
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149

Query: 129 KV----KAKSIVFHRKKN-LQYYDISAKSNYNFEKPFLWLARKLI 168
           +     +A+S       + L   + SAK + N E+ FL +A +LI
Sbjct: 150 REVSLAEAQS--LAEHYDILCAIETSAKDSSNVEEAFLRVATELI 192

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 80.0 bits (198), Expect = 8e-18
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 8/106 (7%)

Query: 209 PDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT 268
           PD+  D +        FK VLVGD   GKT  V+R  TG F ++  +T+GV+        
Sbjct: 22  PDEQYDFL--------FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEI 73

Query: 269 NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
               ++  +WDTAGQE+F  +   YY     AI+ +D+T R ++ +
Sbjct: 74  QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLS 119

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  122 bits (310), Expect = 6e-34
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 6/160 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           +K +L+G  G GK+   +    G  +       G      +           V+D   Q+
Sbjct: 3   YKVLLLGAPGVGKSALARI-FGGVEDGPEAEAAGHTYDRSIVVDGE-EASLMVYDIWEQD 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 127
               L       G   +I++ VT + +++        L R    +++PI+L GNK D+  
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 120

Query: 128 -RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
            R+V   +        + ++ + SA  ++N +  F  + R
Sbjct: 121 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 72.1 bits (178), Expect = 2e-15
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K +L+G  G GK+   +    G  +       G      +           V+D   Q+
Sbjct: 3   YKVLLLGAPGVGKSALARI-FGGVEDGPEAEAAGHTYDRSIVVDGE-EASLMVYDIWEQD 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
               L       G   +I++ VT + +++ 
Sbjct: 61  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEK 90

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  122 bits (308), Expect = 1e-33
 Identities = 36/165 (21%), Positives = 69/165 (41%), Gaps = 7/165 (4%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  ++ VL+GD G GKT+        +    +   LG +V+      +       V DT 
Sbjct: 2   MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTW 60

Query: 67  GQEKFGG--LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNK 122
             EK      ++     G   +I++ +  R ++++       L R    +++PI+L GNK
Sbjct: 61  EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNK 120

Query: 123 VDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
            D+   R+V   +        + ++ + SA   +N  + F  + R
Sbjct: 121 ADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 71.4 bits (176), Expect = 5e-15
 Identities = 20/95 (21%), Positives = 39/95 (41%), Gaps = 3/95 (3%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           M  ++ VL+GD G GKT+        +    +   LG +V+      +       V DT 
Sbjct: 2   MALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTW 60

Query: 282 GQEKFGG--LRDGYYIQGQCAIIMFDVTSRITYKN 314
             EK      ++     G   +I++ +  R ++++
Sbjct: 61  EAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFES 95

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  121 bits (307), Expect = 3e-33
 Identities = 42/164 (25%), Positives = 86/164 (52%), Gaps = 6/164 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G  G GKT+ ++R     F +   +T+GV+            IR  +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D +  
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146

Query: 129 KV----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +     + +     +   +++ + SAK N+N ++ FL L   ++
Sbjct: 147 REITRQQGEKFA-QQITGMRFCEASAKDNFNVDEIFLKLVDDIL 189

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 77.7 bits (192), Expect = 4e-17
 Identities = 26/90 (28%), Positives = 48/90 (53%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G  G GKT+ ++R     F +   +T+GV+            IR  +WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +F  +   YY   +  I+++D+T + T+ +
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDD 116

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  120 bits (302), Expect = 1e-32
 Identities = 32/175 (18%), Positives = 72/175 (41%), Gaps = 16/175 (9%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHP---LVFHTNRGAIRFNVWD 64
            K ++VG+ G+GKTT +++ +  +        AT+G++V      +    +  +  NVWD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 65  TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRIT-YKNVPNWHRDLVRVCENIPIVLCGNKV 123
            AG+E+F      +  Q    + ++D++        +  W  ++     + P++L G  +
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHL 122

Query: 124 DIKDRKVKAKSIVFHRKKNLQYYDI----------SAKSNYNFEKPFLWLARKLI 168
           D+ D K +   +    K+ L               + + +    K    +  + +
Sbjct: 123 DVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESL 177

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 80.5 bits (199), Expect = 4e-18
 Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 5/90 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHP---LVFHTNRGAIRFNVWD 279
            K ++VG+ G+GKTT +++ +  +        AT+G++V      +    +  +  NVWD
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWD 62

Query: 280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSR 309
            AG+E+F      +  Q    + ++D++  
Sbjct: 63  FAGREEFYSTHPHFMTQRALYLAVYDLSKG 92

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  119 bits (301), Expect = 2e-32
 Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 7/166 (4%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
               K  + G  G GK+  V R LT  F  +Y  TL           +   +   + DTA
Sbjct: 26  SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDE-VVSMEILDTA 84

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE     R+G+   G+  ++++D+T R +++ V      L  +   +N+ ++L GNK D
Sbjct: 85  GQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKAD 143

Query: 125 IKD-RKV-KAKSIVFHRKKNLQYYDISAKSNY-NFEKPFLWLARKL 167
           +   R+V   +      +    +Y+ SA +   N  + F  L R++
Sbjct: 144 LDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 73.0 bits (180), Expect = 2e-15
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
               K  + G  G GK+  V R LT  F  +Y  TL           +   +   + DTA
Sbjct: 26  SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDE-VVSMEILDTA 84

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQE     R+G+   G+  ++++D+T R +++ 
Sbjct: 85  GQEDT-IQREGHMRWGEGFVLVYDITDRGSFEE 116

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  117 bits (295), Expect = 1e-31
 Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 10/172 (5%)

Query: 4   EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE---VHPLVF-HTNRGAIR 59
           E  M  ++ VL+G+ G GK+T                 +  E      L+    +   I 
Sbjct: 1   EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
            ++W+  G+ ++  L D     G   +I++ +T R +++        L R    E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118

Query: 118 LCGNKVDIKDRKVKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           L GNK D+   +  + S         + ++ + SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 68.5 bits (168), Expect = 9e-14
 Identities = 20/100 (20%), Positives = 41/100 (41%), Gaps = 6/100 (6%)

Query: 219 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE---VHPLVF-HTNRGAIR 274
           E  M  ++ VL+G+ G GK+T                 +  E      L+    +   I 
Sbjct: 1   EFGMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIIL 60

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            ++W+  G+ ++  L D     G   +I++ +T R +++ 
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEK 98

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  116 bits (294), Expect = 2e-31
 Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 22/173 (12%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----NRGAIRFNVWD 64
           FK +++GD   GKT    R   G F  +  AT+GV+     F       +   I+  +WD
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD-----FRERAVDIDGERIKIQLWD 75

Query: 65  TAGQEKF-GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGN 121
           TAGQE+F   +   YY      + ++D+T+  ++ ++P W  +  +  +  +IP +L GN
Sbjct: 76  TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGN 135

Query: 122 KVDIKDRKV----KAKSIVFHRKKNLQYYDISAKS---NYNFEKPFLWLARKL 167
           K D++         A+   F    ++  ++ SAK+   N + E  F+ LA KL
Sbjct: 136 KCDLRSAIQVPTDLAQK--FADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 76.5 bits (189), Expect = 1e-16
 Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 19/112 (16%)

Query: 209 PDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT 268
           P      +        FK +++GD   GKT    R   G F  +  AT+GV+     F  
Sbjct: 13  PRGSRSRI--------FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVD-----FRE 59

Query: 269 -----NRGAIRFNVWDTAGQEKF-GGLRDGYYIQGQCAIIMFDVTSRITYKN 314
                +   I+  +WDTAGQE+F   +   YY      + ++D+T+  ++ +
Sbjct: 60  RAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS 111

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  116 bits (293), Expect = 3e-31
 Identities = 36/175 (20%), Positives = 70/175 (40%), Gaps = 26/175 (14%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-----VEVHPLVFHTNRGAIRFN 61
            P  K  +VG+  +GK+  V R+LTG + ++     G     + V       +  +    
Sbjct: 18  GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVV-------DGQSYLLL 70

Query: 62  VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLC 119
           + D  G  +       +       + +F +   I+++ V N+   L        +P+VL 
Sbjct: 71  IRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLV 125

Query: 120 GNKVDI---KDRKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           G +  I     R +   +A+ +     K   YY+  A    N E+ F  +A+K++
Sbjct: 126 GTQDAISAANPRVIDDSRARKLS-TDLKRCTYYETCATYGLNVERVFQDVAQKVV 179

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 17/102 (16%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-----VEVHPLVFHTNRGAIRFN 276
            P  K  +VG+  +GK+  V R+LTG + ++     G     + V       +  +    
Sbjct: 18  GPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVV-------DGQSYLLL 70

Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDI 318
           + D  G  +       +       + +F +   I+++  Y+ 
Sbjct: 71  IRDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNY 107

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  117 bits (294), Expect = 3e-31
 Identities = 36/177 (20%), Positives = 75/177 (42%), Gaps = 18/177 (10%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKR--HLTGEFEKKYVATLG------VEVHPLVFH 52
           +++E     ++ VL+G+ G GK+T       +    +              + V      
Sbjct: 29  ISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVD----G 84

Query: 53  TNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV-- 110
            +   I  ++W+  G+ ++  L D     G   +I++ +T R +++        L R   
Sbjct: 85  ESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ 142

Query: 111 CENIPIVLCGNKVDIKD-RKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
            E+IPI+L GNK D+   R+V  ++        + ++ + SA   +N ++ F  + R
Sbjct: 143 TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 67.0 bits (164), Expect = 4e-13
 Identities = 18/110 (16%), Positives = 45/110 (40%), Gaps = 14/110 (12%)

Query: 213 EDLMAAEMDMPSFKCVLVGDGGTGKTTFVKR--HLTGEFEKKYVATLG------VEVHPL 264
           + ++++E     ++ VL+G+ G GK+T       +    +              + V   
Sbjct: 26  DSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVD-- 83

Query: 265 VFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
               +   I  ++W+  G+ ++  L D     G   +I++ +T R +++ 
Sbjct: 84  --GESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEK 129

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  116 bits (291), Expect = 3e-31
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 6/167 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           + S K VL+G+   GK++ V R ++ +F +    T+G          N   ++F +WDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDI 125
           GQE+F  L   YY   Q A++++DVT   ++    +W ++L     ++I I L GNK+D 
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDX 120

Query: 126 KDRKVK-----AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                +      +      +K L +++ SAK+  N    FL +  K+
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 79.8 bits (197), Expect = 6e-18
 Identities = 30/93 (32%), Positives = 50/93 (53%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           + S K VL+G+   GK++ V R ++ +F +    T+G          N   ++F +WDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQE+F  L   YY   Q A++++DVT   ++  
Sbjct: 61  GQERFASLAPXYYRNAQAALVVYDVTKPQSFIK 93

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  115 bits (289), Expect = 1e-30
 Identities = 41/173 (23%), Positives = 67/173 (38%), Gaps = 17/173 (9%)

Query: 4   EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 63
           E    + K V+VGDG  GKT  +     GE    YV T+  E    V          ++W
Sbjct: 18  ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF-ENFSHVMKYKNEEFILHLW 76

Query: 64  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNK 122
           DTAGQE++  LR   Y      ++ F V +R ++ N+   W  ++    +    VL G K
Sbjct: 77  DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLK 136

Query: 123 VDIKDRKVK----------AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           VD++                + +       + Y + S+ +     + F     
Sbjct: 137 VDLRKDGSDDVTKQEGDDLCQKL-----GCVAYIEASSVAKIGLNEVFEKSVD 184

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 82.4 bits (204), Expect = 1e-18
 Identities = 33/109 (30%), Positives = 47/109 (43%), Gaps = 1/109 (0%)

Query: 206 TALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV 265
            A  D +      E    + K V+VGDG  GKT  +     GE    YV T+  E    V
Sbjct: 5   LAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF-ENFSHV 63

Query: 266 FHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
                     ++WDTAGQE++  LR   Y      ++ F V +R ++ N
Sbjct: 64  MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDN 112

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  114 bits (287), Expect = 3e-30
 Identities = 46/173 (26%), Positives = 80/173 (46%), Gaps = 17/173 (9%)

Query: 4   EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 63
                + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +W
Sbjct: 25  YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLW 83

Query: 64  DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNK 122
           DTAGQE +  LR   Y Q    +I F + S  +++NV   W+ ++   C N PI+L G K
Sbjct: 84  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTK 143

Query: 123 VDIKD--------RKVKAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
           +D++D        ++ K   I + +   +       +Y + SA +    +  F
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 85.2 bits (211), Expect = 1e-19
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 1/96 (1%)

Query: 219 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVW 278
                + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +W
Sbjct: 25  YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLW 83

Query: 279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           DTAGQE +  LR   Y Q    +I F + S  +++N
Sbjct: 84  DTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFEN 119

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  113 bits (284), Expect = 4e-30
 Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 18/174 (10%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           M+A       KCV VGDG  GKT  +  + +  F   YV T+  +        N   +  
Sbjct: 3   MSA---SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGATVNL 58

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLC 119
            +WDTAGQE +  LR   Y      I+ F + S+ +Y+NV   W  +L      +PIVL 
Sbjct: 59  GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLV 118

Query: 120 GNKVDIKD------RKVKAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
           G K+D++D          A  I   + + L        Y + S+KS  N +  F
Sbjct: 119 GTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 81.3 bits (201), Expect = 2e-18
 Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 275
           M+A       KCV VGDG  GKT  +  + +  F   YV T+  +        N   +  
Sbjct: 3   MSA---SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGATVNL 58

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            +WDTAGQE +  LR   Y      I+ F + S+ +Y+N
Sbjct: 59  GLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYEN 97

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  112 bits (282), Expect = 7e-30
 Identities = 30/178 (16%), Positives = 67/178 (37%), Gaps = 30/178 (16%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRF 60
           +P  +  ++GD  +GK++ + R LTG ++     T        + V       +      
Sbjct: 5   IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYKKEMLV-------DGQTHLV 56

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV----CENIPI 116
            + + AG          +       I +F +    +++ V   H  L  +       + +
Sbjct: 57  LIREEAGAP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL 111

Query: 117 VL--CGNKVDIKD-RKV---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            L    +++     R V   +A++ +    K   YY+  A    N ++ F  +A+K++
Sbjct: 112 ALVGTQDRISASSPRVVGDARARA-LXADMKRCSYYETXATYGLNVDRVFQEVAQKVV 168

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 15/99 (15%), Positives = 35/99 (35%), Gaps = 19/99 (19%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG------VEVHPLVFHTNRGAIRF 275
           +P  +  ++GD  +GK++ + R LTG ++     T        + V       +      
Sbjct: 5   IPELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTESEQYKKEMLV-------DGQTHLV 56

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
            + + AG          +       I +F +    +++ 
Sbjct: 57  LIREEAGAP-----DAKFSGWADAVIFVFSLEDENSFQA 90

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  110 bits (277), Expect = 4e-29
 Identities = 46/176 (26%), Positives = 76/176 (43%), Gaps = 17/176 (9%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA        KCV+VGDG  GKT  +  +    F ++YV T+  + + +           
Sbjct: 10  MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLL 68

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLC 119
            ++DTAGQE +  LR   Y      +I F V +  +++NV   W  +L     N+P +L 
Sbjct: 69  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 128

Query: 120 GNKVDIKD--------RKVKAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
           G ++D++D          +K K I   + + L        Y + SA +    +  F
Sbjct: 129 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 84.1 bits (208), Expect = 3e-19
 Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 209 PDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT 268
           P      MA        KCV+VGDG  GKT  +  +    F ++YV T+  + + +    
Sbjct: 3   PGAGRSSMAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTV 61

Query: 269 NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
                   ++DTAGQE +  LR   Y      +I F V +  +++N
Sbjct: 62  GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQN 107

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  110 bits (278), Expect = 5e-29
 Identities = 46/165 (27%), Positives = 72/165 (43%), Gaps = 17/165 (10%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
               KCVLVGDG  GKT+ V  + T  +  +Y+ T   +    V   +   +R  + DTA
Sbjct: 18  GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTA 76

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDI 125
           GQ++F  LR   Y      ++ F V S  +++NV   W  ++   C   PI+L G + D+
Sbjct: 77  GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDL 136

Query: 126 KD--------RKVKAKSIVFH-------RKKNLQYYDISAKSNYN 155
           ++         K K K +            K   Y + SA +  N
Sbjct: 137 REDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 82.5 bits (204), Expect = 1e-18
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
               KCVLVGDG  GKT+ V  + T  +  +Y+ T   +    V   +   +R  + DTA
Sbjct: 18  GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTA 76

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQ++F  LR   Y      ++ F V S  +++N
Sbjct: 77  GQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQN 109

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  110 bits (278), Expect = 7e-29
 Identities = 48/176 (27%), Positives = 75/176 (42%), Gaps = 23/176 (13%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
               KCV VGDG  GKT  +  + + +F   Y+ T+  +        +   +   +WDTA
Sbjct: 7   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTA 65

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y      ++ F + S+ +Y+NV   W  +L R   N+PIVL G K+D+
Sbjct: 66  GQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL 125

Query: 126 KDRKVK----------------AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           +D K                   K I         Y + S+K+  N +  F    +
Sbjct: 126 RDDKGYLADHTNVITSTQGEELRKQI-----GAAAYIECSSKTQQNVKAVFDTAIK 176

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 80.5 bits (199), Expect = 7e-18
 Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 1/93 (1%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
               KCV VGDG  GKT  +  + + +F   Y+ T+  +        +   +   +WDTA
Sbjct: 7   SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTA 65

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQE +  LR   Y      ++ F + S+ +Y+N
Sbjct: 66  GQEDYSRLRPLSYRGADIFVLAFSLISKASYEN 98

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  110 bits (277), Expect = 7e-29
 Identities = 48/175 (27%), Positives = 84/175 (48%), Gaps = 17/175 (9%)

Query: 2   AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 61
            A   + S K VLVGDGG GKT+ +     G F + Y  T+       +    +  +  +
Sbjct: 27  EAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGK-PVHLH 85

Query: 62  VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCG 120
           +WDTAGQ+ +  LR  +Y      ++ FDVTS  ++ N+ N W+ ++   C+ +PI++ G
Sbjct: 86  IWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVG 145

Query: 121 NKVDIKD--------RKVKAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
            K D++         R+   + + +HR + +        Y + SA+ + N    F
Sbjct: 146 CKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 80.2 bits (198), Expect = 1e-17
 Identities = 32/98 (32%), Positives = 49/98 (50%), Gaps = 1/98 (1%)

Query: 217 AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 276
            A   + S K VLVGDGG GKT+ +     G F + Y  T+       +    +  +  +
Sbjct: 27  EAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYMVNLQVKGK-PVHLH 85

Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +WDTAGQ+ +  LR  +Y      ++ FDVTS  ++ N
Sbjct: 86  IWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDN 123

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  116 bits (292), Expect = 8e-29
 Identities = 36/174 (20%), Positives = 67/174 (38%), Gaps = 13/174 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA--------IRFN 61
            K  L+GDG  GKT+ +K+ +   F+ K   T G+ V        +G           F+
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 62  VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 121
            WD  GQE        +  +    +++ D  +     N   W R + +     P+++  N
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRT---DSNKHYWLRHIEKYGGKSPVIVVMN 158

Query: 122 KVDIKD-RKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 173
           K+D      ++ K I         +++ IS K+    E     L   ++   ++
Sbjct: 159 KIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHPDSI 212

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 74.3 bits (182), Expect = 1e-14
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA--------IRFN 276
            K  L+GDG  GKT+ +K+ +   F+ K   T G+ V        +G           F+
Sbjct: 42  IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101

Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
            WD  GQE        +  +    +++ D  +      +  
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTDSNKHYWLR 142

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  109 bits (275), Expect = 1e-28
 Identities = 46/175 (26%), Positives = 78/175 (44%), Gaps = 17/175 (9%)

Query: 2   AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 61
            + M     K V+VGDG  GKT  +      +F + YV T+  E +      +   +   
Sbjct: 18  GSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELA 76

Query: 62  VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCG 120
           +WDTAGQE +  LR   Y      ++ F + S  + +N+P  W  ++   C N+PI+L G
Sbjct: 77  LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVG 136

Query: 121 NKVDIKD--------RKVKAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
           NK D++          K+K + +     +++        Y + SAK+     + F
Sbjct: 137 NKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 79.0 bits (195), Expect = 2e-17
 Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 217 AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 276
            + M     K V+VGDG  GKT  +      +F + YV T+  E +      +   +   
Sbjct: 18  GSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELA 76

Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +WDTAGQE +  LR   Y      ++ F + S  + +N
Sbjct: 77  LWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLEN 114

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  109 bits (274), Expect = 2e-28
 Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 17/170 (10%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M   K V+VGDG  GKT  +      EF + YV T+       +    +  +   +WDTA
Sbjct: 23  MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGK-QVELALWDTA 81

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDI 125
           GQE +  LR   Y      ++ F V S  + +N+P  W  ++   C N+PI+L  NK D+
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDL 141

Query: 126 KD--------RKVKAKSIVFHRKKNL-------QYYDISAKSNYNFEKPF 160
           +          ++K + +     + +        Y + SAK+     + F
Sbjct: 142 RSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 79.8 bits (197), Expect = 1e-17
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 1/93 (1%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           M   K V+VGDG  GKT  +      EF + YV T+       +    +  +   +WDTA
Sbjct: 23  MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGK-QVELALWDTA 81

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQE +  LR   Y      ++ F V S  + +N
Sbjct: 82  GQEDYDRLRPLSYPDTDVILMCFSVDSPDSLEN 114

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  108 bits (271), Expect = 4e-28
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 9/163 (5%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
               ++G  G GK+    + LT  F  +Y   L           ++  +   V DTA  +
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQ-PVHLRVMDTADLD 80

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDI 125
                 + Y       ++++ V SR ++ +  ++   L         +IP +L GNK+D+
Sbjct: 81  TPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDM 139

Query: 126 KD-RKV-KAKSIVFHRKKNLQYYDISAKSNY-NFEKPFLWLAR 165
              R+V KA+ +    +    ++++SA  ++ + +  F    R
Sbjct: 140 AQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVR 182

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 68.0 bits (167), Expect = 1e-13
 Identities = 17/90 (18%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
               ++G  G GK+    + LT  F  +Y   L           ++  +   V DTA  +
Sbjct: 22  VNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQ-PVHLRVMDTADLD 80

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
                 + Y       ++++ V SR ++ +
Sbjct: 81  TPRNC-ERYLNWAHAFLVVYSVDSRQSFDS 109

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  105 bits (263), Expect = 4e-27
 Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 2/118 (1%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++ 
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 77.4 bits (191), Expect = 4e-17
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  +R   Y      +I FD++   T  +
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDS 96

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  105 bits (264), Expect = 4e-27
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
             K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G 
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGS 86

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
             +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++ 
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 77.9 bits (192), Expect = 5e-17
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
             K V+VGD   GKT  +       F + YV T+  E +   F  +   I  ++WDT+G 
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGS 86

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
             +  +R   Y      +I FD++   T  +
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDS 117

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score =  105 bits (263), Expect = 7e-27
 Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 2/127 (1%)

Query: 2   AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 61
           A +  +   K VLVGD   GKT  ++      + + YV T+  E +     T    +  +
Sbjct: 20  APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF-ENYTACLETEEQRVELS 78

Query: 62  VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCG 120
           +WDT+G   +  +R   Y      ++ FD++   T  +    W  +++  C +  ++L G
Sbjct: 79  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIG 138

Query: 121 NKVDIKD 127
            K D++ 
Sbjct: 139 CKTDLRT 145

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 79.1 bits (195), Expect = 2e-17
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 1/101 (0%)

Query: 217 AAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFN 276
           A +  +   K VLVGD   GKT  ++      + + YV T+  E +     T    +  +
Sbjct: 20  APQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF-ENYTACLETEEQRVELS 78

Query: 277 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           +WDT+G   +  +R   Y      ++ FD++   T  +   
Sbjct: 79  LWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALK 119

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  102 bits (257), Expect = 3e-26
 Identities = 46/168 (27%), Positives = 80/168 (47%), Gaps = 17/168 (10%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q   ++I F + S  +++NV   W+ ++   C N PI+L G K+D++D
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 128 --------RKVKAKSIVFH-------RKKNLQYYDISAKSNYNFEKPF 160
                   ++ K   I +            ++Y + SA +    +  F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 74.8 bits (184), Expect = 5e-16
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q   ++I F + S  +++N
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFEN 94

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 80.0 bits (197), Expect = 6e-17
 Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 17/169 (10%)

Query: 3   AEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNV 62
            E      KCV+VGDG  GKT  +  + T  F  +Y+ T+  + +      +   +   +
Sbjct: 149 DEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGL 207

Query: 63  WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGN 121
           WDTAG E +  LR   Y Q    +I F + S  ++ +V   W+ ++   C N PI+L G 
Sbjct: 208 WDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGT 267

Query: 122 KVDIKD--------RKVKAKSIVFHRKKNL-------QYYDISAKSNYN 155
           K+D++D        ++ K   I + +   +       +Y + SA +   
Sbjct: 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 55.8 bits (134), Expect = 7e-09
 Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 191 QWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFE 250
           Q            +E  +          E      KCV+VGDG  GKT  +  + T  F 
Sbjct: 122 QLDGTEHVRDAAEREGVMLIKKTAENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFP 181

Query: 251 KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI 310
            +Y+ T+  + +      +   +   +WDTAG E +  LR   Y Q    +I F + S  
Sbjct: 182 GEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPA 240

Query: 311 TYKN 314
           ++ +
Sbjct: 241 SFHH 244

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 72.7 bits (178), Expect = 8e-15
 Identities = 26/123 (21%), Positives = 47/123 (38%), Gaps = 9/123 (7%)

Query: 53  TNRGAIRFNVWDTAGQEKF---GGLRDGYYIQGQCAIIMFDVTS--RITYKNVPNWHRDL 107
            +   + +   D  G E+      + DG  +     ++  DV+      + +   +  +L
Sbjct: 132 ASAEKLMYFCTDQLGLEQDFEQKQMPDGK-LLVDGFLLGIDVSRGMNRNFDDQLKFVSNL 190

Query: 108 VRVC--ENIPIVLCGNKVDIKD-RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA 164
                    PIV+   K D    R ++        KKNLQ  + SA+SN N +  F  L 
Sbjct: 191 YNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLV 250

Query: 165 RKL 167
           + +
Sbjct: 251 QLI 253

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 69.8 bits (171), Expect = 4e-14
 Identities = 36/178 (20%), Positives = 62/178 (34%), Gaps = 18/178 (10%)

Query: 9   SFKCVLVGDGGTGKTTFVKR-------HLTGE---FEKKYVATLGVEVHPLVFHTNRGA- 57
           +FK V  G G +GKTT +K           GE      +   TL  +  PL     +G  
Sbjct: 14  NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73

Query: 58  IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE----- 112
            RF+++   GQ  +   R          + + D        N  +       + E     
Sbjct: 74  TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133

Query: 113 -NIPIVLCGNKVDIKDR-KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            ++PIV+  NK D+ D   V+    V   +      +  A       +    ++R ++
Sbjct: 134 DDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVL 191

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 11/95 (11%)

Query: 224 SFKCVLVGDGGTGKTTFVKR-------HLTGE---FEKKYVATLGVEVHPLVFHTNRGA- 272
           +FK V  G G +GKTT +K           GE      +   TL  +  PL     +G  
Sbjct: 14  NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73

Query: 273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT 307
            RF+++   GQ  +   R          + + D  
Sbjct: 74  TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSA 108

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 65.8 bits (160), Expect = 3e-12
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 28/188 (14%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           K +L+G  G+GK++     +   +         AT+ VE   L F  N   +  N+WD  
Sbjct: 5   KLLLMGRSGSGKSSMRSI-IFSNYSAFDTRRLGATIDVEHSHLRFLGN---MTLNLWDCG 60

Query: 67  GQEKF-----GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHR---DLVRVCENIPIVL 118
           GQ+ F        +D  +   Q  I +FDV S    K++  + +    L +   +  I +
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFV 120

Query: 119 CGNKVD----------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
             +K+D           +                      ++  + +  K +  +   LI
Sbjct: 121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLI 180

Query: 169 GDPNLEFV 176
             PN+   
Sbjct: 181 --PNMSNH 186

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 13/93 (13%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           K +L+G  G+GK++     +   +         AT+ VE   L F  N   +  N+WD  
Sbjct: 5   KLLLMGRSGSGKSSMRSI-IFSNYSAFDTRRLGATIDVEHSHLRFLGN---MTLNLWDCG 60

Query: 282 GQEKF-----GGLRDGYYIQGQCAIIMFDVTSR 309
           GQ+ F        +D  +   Q  I +FDV S 
Sbjct: 61  GQDVFMENYFTKQKDHIFQMVQVLIHVFDVEST 93

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 58.8 bits (142), Expect = 2e-10
 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 15/143 (10%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           + +L+G   +GK++  K  +  +          +T  +    +   +    + F +WD  
Sbjct: 22  RILLMGLRRSGKSSIQKV-VFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFP 77

Query: 67  GQEKFGGL---RDGYYIQGQCAIIMFDVTSRIT--YKNVPNWHRDLVRVCENIPIVLCGN 121
           GQ  F       +  +      I + D           +        +V  ++   +  +
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIH 137

Query: 122 KVDI--KDRKVKAKSIVFHRKKN 142
           KVD    D K++ +  +  R  +
Sbjct: 138 KVDGLSDDHKIETQRDIHQRAND 160

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 52.3 bits (125), Expect = 3e-08
 Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYV----ATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           + +L+G   +GK++  K  +  +          +T  +    +   +    + F +WD  
Sbjct: 22  RILLMGLRRSGKSSIQKV-VFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFP 77

Query: 282 GQEKFGGL---RDGYYIQGQCAIIMFDVTSRI 310
           GQ  F       +  +      I + D     
Sbjct: 78  GQMDFFDPTFDYEMIFRGTGALIYVIDAQDDY 109

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 53.3 bits (129), Expect = 1e-08
 Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 23/168 (13%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
            LVG   +GKTTFV    +G+F +  + T+G  +  +      G +   +WD  GQ +F 
Sbjct: 26  TLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQPRFR 81

Query: 73  GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKD 127
            + + Y       + M D   +   + +     +L  + +      IP+++ GNK D+  
Sbjct: 82  SMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 138

Query: 128 --------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                    K+   +I   + + +  Y IS K   N +    WL +  
Sbjct: 139 ALDEKELIEKMNLSAI---QDREICCYSISCKEKDNIDITLQWLIQHS 183

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
            LVG   +GKTTFV    +G+F +  + T+G  +  +      G +   +WD  GQ +F 
Sbjct: 26  TLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQPRFR 81

Query: 288 GLRDGYYIQGQCAIIMFDVTSR 309
            + + Y       + M D   +
Sbjct: 82  SMWERYCRGVSAIVYMVDAADQ 103

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 36/168 (21%), Positives = 64/168 (38%), Gaps = 24/168 (14%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+K  
Sbjct: 33  LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ICFTVWDVGGQDKIR 87

Query: 73  GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKD 127
            L   Y+   Q  I + D   R   + V     +L ++ +     +  +++  NK D+ +
Sbjct: 88  PLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQKMLQEDELRDAVLLVFANKQDMPN 144

Query: 128 --------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                    K+  + +   R +        A           WL+ +L
Sbjct: 145 AMPVSELTDKLGLQHL---RSRTWYVQATCATQGTGLYDGLDWLSHEL 189

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
           ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+K  
Sbjct: 33  LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ICFTVWDVGGQDKIR 87

Query: 288 GLRDGYYIQGQCAIIMFDVTSR 309
            L   Y+   Q  I + D   R
Sbjct: 88  PLWRHYFQNTQGLIFVVDSNDR 109

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 40/168 (23%), Positives = 67/168 (39%), Gaps = 24/168 (14%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+K  
Sbjct: 4   LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDKIR 58

Query: 73  GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKD 127
            L   Y+   Q  I + D   R   + V     +L+R+       +  +++  NK D+ +
Sbjct: 59  PLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPN 115

Query: 128 --------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                    K+   S+   R +N       A S     +   WL+ +L
Sbjct: 116 AMNAAEITDKLGLHSL---RHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
           ++VG    GKTT + +   GE     + T+G  V  + +      I F VWD  GQ+K  
Sbjct: 4   LMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEYKN----ISFTVWDVGGQDKIR 58

Query: 288 GLRDGYYIQGQCAIIMFDVTSR 309
            L   Y+   Q  I + D   R
Sbjct: 59  PLWRHYFQNTQGLIFVVDSNDR 80

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 51.9 bits (125), Expect = 4e-08
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 24/171 (14%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G    GKTT +K+    + +     TLG  +  L         + N+WD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNIKTLEH----RGFKLNIWDVGGQK 73

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
                   Y+      I + D   R   + + +  R+L  +          +++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANKQD 130

Query: 125 IKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +            ++  SI   R  + +    SA +  +      WL   +
Sbjct: 131 LPGALSCNAIQEALELDSI---RSHHWRIQGCSAVTGEDLLPGIDWLLDDI 178

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT +K+    + +     TLG  +  L         + N+WD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNIKTLEH----RGFKLNIWDVGGQK 73

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
                   Y+      I + D   R
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADR 98

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 51.4 bits (124), Expect = 5e-08
 Identities = 35/168 (20%), Positives = 61/168 (36%), Gaps = 24/168 (14%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           +++G  G GKTT + R   GE     + T+G  V  + +      ++F VWD  G     
Sbjct: 11  LILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTY----KNLKFQVWDLGGLTSIR 65

Query: 73  GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKD 127
                YY      I + D   R     +     +LV + E        +V+  NK D++ 
Sbjct: 66  PYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 122

Query: 128 --------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                     +   ++   + +  Q +  SA      ++   WL   L
Sbjct: 123 AMTSSEMANSLGLPAL---KDRKWQIFKTSATKGTGLDEAMEWLVETL 167

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 5/82 (6%)

Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
           +++G  G GKTT + R   GE     + T+G  V  + +      ++F VWD  G     
Sbjct: 11  LILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTY----KNLKFQVWDLGGLTSIR 65

Query: 288 GLRDGYYIQGQCAIIMFDVTSR 309
                YY      I + D   R
Sbjct: 66  PYWRCYYSNTDAVIYVVDSCDR 87

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 26/174 (14%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVA-TLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
              + +G   +GKTT + +      + + +  T+G  +      +    + F V+D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS----LSFTVFDMSGQ 77

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-------NIPIVLCGN 121
            ++  L + YY +GQ  I + D + R     +     +L  +          IPI+   N
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDR---LRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134

Query: 122 KVDIKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           K+D++D        + +  ++I   + K        A      ++   WL  ++
Sbjct: 135 KMDLRDAVTSVKVSQLLCLENI---KDKPWHICASDAIKGEGLQEGVDWLQDQI 185

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVA-TLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
              + +G   +GKTT + +      + + +  T+G  +      +    + F V+D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSS----LSFTVFDMSGQ 77

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSR 309
            ++  L + YY +GQ  I + D + R
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDR 103

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 50.7 bits (122), Expect = 9e-08
 Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 24/171 (14%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G  G GKTT + R   GE       T+G  V  L +      ++ NVWD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVETLSYKN----LKLNVWDLGGQT 73

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
                   YY      I + D T +     +    ++L  + +     +  +++  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDK---DRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 125 IKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                      +++    +   + ++      SA       +   WL   +
Sbjct: 131 QPGALSASEVSKELNLVEL---KDRSWSIVASSAIKGEGITEGLDWLIDVI 178

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G  G GKTT + R   GE       T+G  V  L +      ++ NVWD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVETLSYKN----LKLNVWDLGGQT 73

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
                   YY      I + D T +
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDK 98

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 50.7 bits (122), Expect = 9e-08
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 24/171 (14%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K ++VG    GKTT + +    E       T+G  V  +V +      RF +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINN----TRFLMWDIGGQE 71

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
                 + YY   +  I++ D T R   + +     +L ++          +++  NK D
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128

Query: 125 IKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +K+        + +K  SI   +          A +     +   W+  +L
Sbjct: 129 VKECMTVAEISQFLKLTSI---KDHQWHIQACCALTGEGLCQGLEWMMSRL 176

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K ++VG    GKTT + +    E       T+G  V  +V +      RF +WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINN----TRFLMWDIGGQE 71

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
                 + YY   +  I++ D T R
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDR 96

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 33/171 (19%), Positives = 61/171 (35%), Gaps = 24/171 (14%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +L+G    GKTT +K+  + +       T G  +  +         + NVWD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKSVQS----QGFKLNVWDIGGQR 71

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
           K       Y+      I + D   R   K      ++L  + E      +P+++  NK D
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADR---KRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 125 IKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +            +   +I   R +  Q    SA +    +    W+ + +
Sbjct: 129 LLTAAPASEIAEGLNLHTI---RDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 42.6 bits (101), Expect = 6e-05
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +L+G    GKTT +K+  + +       T G  +  +         + NVWD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKSVQS----QGFKLNVWDIGGQR 71

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
           K       Y+      I + D   R
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADR 96

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 35/171 (20%), Positives = 62/171 (36%), Gaps = 24/171 (14%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G    GKT+ + R   G+     V T+GV +  L +      I F VWD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVGVNLETLQY----KNISFEVWDLGGQT 77

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
                   Y+      I + D T R     +     +L  + +        +++  NK D
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDELRKSLLLIFANKQD 134

Query: 125 IKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           + D         ++   SI     +       S+K+     +   WL  +L
Sbjct: 135 LPDAASEAEIAEQLGVSSI---MNRTWTIVKSSSKTGDGLVEGMDWLVERL 182

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKT+ + R   G+     V T+GV +  L +      I F VWD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVGVNLETLQY----KNISFEVWDLGGQT 77

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
                   Y+      I + D T R
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDR 102

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 36/171 (21%), Positives = 65/171 (38%), Gaps = 24/171 (14%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K ++VG    GKTT + +    E       T+G  V  +V +      RF +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINN----TRFLMWDIGGQE 76

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
                 + YY   +  I++ D T R   + +     +L ++          +++  NK D
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 133

Query: 125 IKD--------RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +K+        + +K  SI   +          A +     +   W+  +L
Sbjct: 134 VKECMTVAEISQFLKLTSI---KDHQWHIQACCALTGEGLCQGLEWMMSRL 181

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K ++VG    GKTT + +    E       T+G  V  +V +      RF +WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVINN----TRFLMWDIGGQE 76

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSR 309
                 + YY   +  I++ D T R
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDR 101

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 28/125 (22%), Positives = 47/125 (37%), Gaps = 16/125 (12%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           + VG   +GKT    R LTG++ +    ++         + NRG     + D  G E   
Sbjct: 11  LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRG-NSLTLIDLPGHES-- 66

Query: 73  GLRDGY---YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN-------IPIVLCGNK 122
            LR      +     A++ F V S    + V +    L +V  +         +++  NK
Sbjct: 67  -LRFQLLDRFKSSARAVV-FVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNK 124

Query: 123 VDIKD 127
            DI  
Sbjct: 125 QDIAM 129

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF- 286
           + VG   +GKT    R LTG++ +    ++         + NRG     + D  G E   
Sbjct: 11  LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRG-NSLTLIDLPGHESLR 68

Query: 287 GGLRDGYYIQGQCAIIMFDVTSR 309
             L D +    +  + + D  + 
Sbjct: 69  FQLLDRFKSSARAVVFVVDSAAF 91

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 23/120 (19%), Positives = 42/120 (35%), Gaps = 13/120 (10%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           V +G    GKTT +          ++V TL      L        + F  +D  G  +  
Sbjct: 29  VFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQAR 83

Query: 73  GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVDIKD 127
            +   Y       + + D       + +     +L  +       N+PI++ GNK+D  +
Sbjct: 84  RVWKNYLPAINGIVFLVDCADH---ERLLESKEELDSLMTDETIANVPILILGNKIDRPE 140

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 5/82 (6%)

Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
           V +G    GKTT +          ++V TL      L        + F  +D  G  +  
Sbjct: 29  VFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQAR 83

Query: 288 GLRDGYYIQGQCAIIMFDVTSR 309
            +   Y       + + D    
Sbjct: 84  RVWKNYLPAINGIVFLVDCADH 105

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 52/441 (11%), Positives = 107/441 (24%), Gaps = 187/441 (42%)

Query: 8   PSFKCVLVGDGGTGKTTFVKRHLTGE--FEKKYVATLGVEVH------------------ 47
           P+   ++ G  G+GKT      +  +     K    +  ++                   
Sbjct: 149 PAKNVLIDGVLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 48  --------------------PLVFHTNRGAIRF---------------NVWDTAGQEKFG 72
                                L  H+ +  +R                NV +      F 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263

Query: 73  GLRDGYYIQGQCAIIM-------FDVTSRITYKNVPNWHR-------------------- 105
                      C I++        D  S  T  ++   H                     
Sbjct: 264 ---------LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 106 --DL-VRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSN-----YNFE 157
             DL   V    P  L      I+D              N ++ +    +       N  
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGL--------ATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 158 KPFLWLARKLIGDPNLEFVAMPALLP-----PEVTMDPQWQSRIEQDLKEAQETALPDDD 212
           +P  +  RK+       F  + ++ P     P + +   W               +   D
Sbjct: 367 EPAEY--RKM-------FDRL-SVFPPSAHIPTILLSLIWF-------------DVIKSD 403

Query: 213 EDLMAAEMDMPSFKCVLVGDGGTGKTTF--VKRHLTGEFEKKYVATLGVEVHPLVFHTNR 270
             ++  ++       ++         +   +   L  + E +Y       +H       R
Sbjct: 404 VMVVVNKL---HKYSLVEKQPKESTISIPSIYLELKVKLENEY------ALH-------R 447

Query: 271 GAI-RFNVWDTAGQEKFGGLR-DGYYIQGQCAIIMFDVTSRITYKNY--YDISAKSNYN- 325
             +  +N+  T   +       D Y+                 Y ++  + +    +   
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYF-----------------Y-SHIGHHLKNIEHPER 489

Query: 326 ---FEKPFL---WLARKLIGD 340
              F   FL   +L +K+  D
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHD 510

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 26/136 (19%), Positives = 50/136 (36%), Gaps = 9/136 (6%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           +L+G    GK++  K  +    +      L    +P         I   V +  GQ  + 
Sbjct: 3   LLMGVRRCGKSSICKV-VFHNMQPLDTLYLESTSNP-SLEHFSTLIDLAVMELPGQLNYF 60

Query: 73  GLR-DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV----RVCENIPIVLCGNKVDI-- 125
               D   +      +++ + S+  Y N       ++    +V  +I I +  +KVD   
Sbjct: 61  EPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLS 120

Query: 126 KDRKVKAKSIVFHRKK 141
           +D KV A+  +  R  
Sbjct: 121 EDFKVDAQRDIMQRTG 136

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 16/125 (12%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           ++ G   +GKT+ +   LT +  +  V +      PL      G     + D  G  K  
Sbjct: 52  IIAGPQNSGKTSLLTL-LTTDSVRPTVVSQE----PLSAADYDG-SGVTLVDFPGHVKLR 105

Query: 73  GLRDGYYIQGQCAI--IMFDVTSRITYKNVPNWHRDLVRV--------CENIPIVLCGNK 122
                Y       +  ++F V S +  K +      LV +           I I++  NK
Sbjct: 106 YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 165

Query: 123 VDIKD 127
            ++  
Sbjct: 166 SELFT 170

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 43.2 bits (102), Expect = 4e-05
 Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 16/125 (12%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           ++ G   +GKT+ +   LT +  +  V +        +   +       + D  G  K  
Sbjct: 16  IIAGPQNSGKTSLLTL-LTTDSVRPTVVSQEP-----LSAADYDGSGVTLVDFPGHVKLR 69

Query: 73  GLRDGYYIQGQCAI--IMFDVTSRITYKNVPNWHRDLVRV--------CENIPIVLCGNK 122
                Y       +  ++F V S +  K +      LV +           I I++  NK
Sbjct: 70  YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 129

Query: 123 VDIKD 127
            ++  
Sbjct: 130 SELFT 134

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 40.6 bits (96), Expect = 3e-04
 Identities = 23/124 (18%), Positives = 41/124 (33%), Gaps = 13/124 (10%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
             K + +G    GKTT +              T       L      G I+F  +D  G 
Sbjct: 23  HGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAI----GNIKFTTFDLGGH 77

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKV 123
            +   L   Y+ +    + + D       +       +L  +       ++P V+ GNK+
Sbjct: 78  IQARRLWKDYFPEVNGIVFLVDAADP---ERFDEARVELDALFNIAELKDVPFVILGNKI 134

Query: 124 DIKD 127
           D  +
Sbjct: 135 DAPN 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	385
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	100.0
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	100.0
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.97
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.96
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.95
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.94
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.94
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.94
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.94
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.94
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.93
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.93
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.93
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.93
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.93
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.93
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.93
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.93
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.93
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.93
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.93
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.93
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.93
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.93
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.93
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.93
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.93
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.93
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.93
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.93
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.93
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.93
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.93
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.93
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.93
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.93
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.93
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.93
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.93
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.93
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.93
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.93
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.93
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.93
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.93
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.93
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.93
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.93
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.93
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.93
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.93
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.92
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.92
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.92
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.92
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.92
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.92
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.92
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.92
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.92
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.92
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.92
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.92
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.92
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.92
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.92
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.92
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.92
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.92
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.92
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.92
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.92
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.92
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.92
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.92
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.91
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.91
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.91
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.91
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.91
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.91
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.91
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.91
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.91
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.91
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.91
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.91
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.91
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.9
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.9
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.9
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.9
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.9
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.9
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.9
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.89
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.89
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.89
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.89
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.89
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.88
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.88
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.87
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.87
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.87
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.87
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.87
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.87
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.87
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.78
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.87
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.87
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.86
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.86
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.86
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.86
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.86
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.86
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.86
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.86
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.86
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.86
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.86
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.86
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.86
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.86
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.86
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.86
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.86
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.86
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.86
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.86
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.86
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.86
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.86
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.86
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.86
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.86
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.86
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.85
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.85
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.85
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.85
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.85
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.85
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.85
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.85
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.85
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.85
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.85
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.85
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.85
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.85
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.85
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.85
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.85
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.84
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.84
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.84
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.84
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.84
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.84
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.84
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.84
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.84
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.84
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.84
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.84
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.84
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.84
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.84
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.84
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.84
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.83
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.83
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.83
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.83
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.83
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.83
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.83
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.83
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.83
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.83
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.83
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.83
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.83
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.83
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.83
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.83
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.83
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.82
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.82
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.82
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.82
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.82
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.82
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.82
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.82
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.82
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.82
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.82
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.82
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.82
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.82
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.81
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.81
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.81
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.81
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.81
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.81
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.81
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.81
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.81
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.8
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.8
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.8
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.8
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.79
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.79
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.79
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.78
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.78
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.77
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.77
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.77
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.77
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.64
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.77
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.77
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.76
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.76
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.76
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.75
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.75
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.75
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.75
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.75
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.74
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.73
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.73
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.72
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.72
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.71
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.71
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.71
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.71
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.71
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.7
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.69
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.69
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.69
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.69
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.69
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.69
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.68
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.68
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.68
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.68
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.67
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.67
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.66
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.66
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.66
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.66
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.66
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.66
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.66
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.65
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.65
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.65
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.64
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.64
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.64
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.64
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.63
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.63
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.63
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.63
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.63
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.62
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.62
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.61
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.61
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.61
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.61
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.61
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.61
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.61
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.6
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.6
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.6
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.6
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.59
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.58
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.58
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.58
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.58
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	99.58
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.57
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.57
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.57
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.56
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.55
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.55
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.53
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.53
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.52
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.51
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.5
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.5
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.49
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.47
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.47
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.46
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.45
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.45
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.44
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.43
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.4
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.4
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.4
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.4
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.4
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.4
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.39
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.39
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.37
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.37
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.37
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.37
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.36
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.36
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.35
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.35
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.35
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.32
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.31
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.31
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.3
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.3
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.3
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.29
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.29
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.29
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.29
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.29
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.28
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.28
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.28
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.27
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.27
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.26
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.25
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.24
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.23
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.22
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.22
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.22
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.22
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.2
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.2
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.18
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.18
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	99.18
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.17
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.17
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.17
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.17
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.16
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.16
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.14
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.14
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.13
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.13
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.13
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.13
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.12
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.12
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.12
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.11
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.11
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.11
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.11
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	99.09
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.09
1g6h_A	257	High-affinity branched-chain amino acid transport	99.09
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.08
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.07
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.07
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.07
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.07
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.07
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.06
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.05
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.02
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	99.01
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.01
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.01
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.0
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.0
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.99
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.98
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.98
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.98
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.97
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.97
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.96
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.96
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.94
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.93
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.92
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.91
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.9
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.9
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.88
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	98.88
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.87
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.86
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.86
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.85
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.84
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.84
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.82
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.79
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.79
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.77
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.76
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.74
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.73
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.71
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.7
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.7
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.69
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.67
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.65
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.65
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.65
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.64
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.63
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	98.61
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.6
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.59
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.57
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.57
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.57
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.57
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.56
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.56
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.55
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.55
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.55
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.53
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.51
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.51
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.51
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.51
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.48
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.47
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.46
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.42
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.41
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.41
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.39
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.39
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.38
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.36
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.36
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.3
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.3
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	98.26
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.26
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.24
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.21
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.16
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.1
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.09
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.05
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.0
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.0
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.0
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	97.95
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.93
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.82
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.69
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.68
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.66
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.64
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.6
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.57
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.54
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.52

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=100.00  E-value=7.5e-40  Score=310.65  Aligned_cols=277  Identities=18%  Similarity=0.175  Sum_probs=187.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc--------ccccchhhhhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE--------KFGGLRDGYYI   80 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~--------~~~~~~~~~~~   80 (385)
                      .++|+|+|++|||||||+|+|++. ....+.+++|+|++.......+.+..+.+|||||+.        .+......++.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            469999999999999999996654 445678899999999999988888899999999985        34445566788


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      .+|++|+|+|+.+..++.  ..++..+.+ ..++|+++|+||+|+.....  ...+++......++++||++|.|+.+++
T Consensus        82 ~ad~il~vvD~~~~~~~~--d~~~~~~l~-~~~~pvilv~NK~D~~~~~~--~~~~~~~lg~~~~~~iSA~~g~gv~~L~  156 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAA--DEEVAKILY-RTKKPVVLAVNKLDNTEMRA--NIYDFYSLGFGEPYPISGTHGLGLGDLL  156 (436)
T ss_dssp             HCSEEEEEEETTTCSCHH--HHHHHHHHT-TCCSCEEEEEECCCC-------CCCSSGGGSSCCCEECBTTTTBTHHHHH
T ss_pred             hCCEEEEEEeCCCCCCHH--HHHHHHHHH-HcCCCEEEEEECccCccchh--hHHHHHHcCCCCeEEEeCcCCCChHHHH
Confidence            999999999998876543  234444333 25889999999999865322  1122333333478999999999999999


Q ss_pred             HHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHH
Q psy125          161 LWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTF  240 (385)
Q Consensus       161 ~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~  240 (385)
                      ..+.+.+...+..                                             ......+|++++|.+|||||||
T Consensus       157 ~~i~~~l~~~~~~---------------------------------------------~~~~~~~ki~lvG~~nvGKSSL  191 (436)
T 2hjg_A          157 DAVAEHFKNIPET---------------------------------------------KYNEEVIQFCLIGRPNVGKSSL  191 (436)
T ss_dssp             HHHHHTGGGCCSS---------------------------------------------CCCTTCEEEEEECSTTSSHHHH
T ss_pred             HHHHHhcCccccc---------------------------------------------cccccCcEEEEEcCCCCCHHHH
Confidence            9998876432100                                             0011348999999999999999


Q ss_pred             HHHHhcCccccccccceeeEEEEE--EEEeCCeeEEEEEeeCCCccc----------cCcccc-cccccCcEEEEEEeCC
Q psy125          241 VKRHLTGEFEKKYVATLGVEVHPL--VFHTNRGAIRFNVWDTAGQEK----------FGGLRD-GYYIQGQCAIIMFDVT  307 (385)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~-~~~~~~~~~ilv~d~~  307 (385)
                      +++++...+. ...+..|++....  .+..++  ..+.||||||+.+          |..++. .+++.+|++|+|||++
T Consensus       192 in~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~  268 (436)
T 2hjg_A          192 VNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGE  268 (436)
T ss_dssp             HHHHHTSTTE-EEC---------CCEEEEETT--EEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETT
T ss_pred             HHHHhCCCce-eecCCCCceeeeeEEEEEECC--eEEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEEEEEEcCC
Confidence            9999876542 2233445555543  333444  4589999999843          333333 3788999999999999


Q ss_pred             Chhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125          308 SRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       308 ~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                      ++.++++                                                 |++|||++|.||+++|..+.+.+.
T Consensus       269 ~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~  348 (436)
T 2hjg_A          269 EGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE  348 (436)
T ss_dssp             TCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence            9888776                                                 689999999999999999998876


Q ss_pred             c
Q psy125          339 G  339 (385)
Q Consensus       339 ~  339 (385)
                      .
T Consensus       349 ~  349 (436)
T 2hjg_A          349 N  349 (436)
T ss_dssp             H
T ss_pred             H
Confidence            5

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=100.00  E-value=6.3e-37  Score=290.81  Aligned_cols=282  Identities=17%  Similarity=0.163  Sum_probs=186.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc---------ccchhhhhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF---------GGLRDGYYI   80 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~---------~~~~~~~~~   80 (385)
                      .+|+|+|++|||||||+|+|++.. ...+.+++|+|++.......+.+..+.+|||||+...         ......+++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~-~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKK-KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   80 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-CceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence            489999999999999999977654 4456788899998887777667778999999997642         223456789


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHH-HHHHHhcCCeEEEEcCCCCCChHHH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS-IVFHRKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~-~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      ++|++|+|+|+++..+..  ..++..+.+. .++|+++|+||+|+.... .... .+++......++++||++|.|+.++
T Consensus        81 ~ad~il~V~D~~~~~~~~--d~~i~~~l~~-~~~p~ilv~NK~D~~~~~-~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L  156 (439)
T 1mky_A           81 EADLVLFVVDGKRGITKE--DESLADFLRK-STVDTILVANKAENLREF-EREVKPELYSLGFGEPIPVSAEHNINLDTM  156 (439)
T ss_dssp             TCSEEEEEEETTTCCCHH--HHHHHHHHHH-HTCCEEEEEESCCSHHHH-HHHTHHHHGGGSSCSCEECBTTTTBSHHHH
T ss_pred             hCCEEEEEEECCCCCCHH--HHHHHHHHHH-cCCCEEEEEeCCCCcccc-HHHHHHHHHhcCCCCEEEEeccCCCCHHHH
Confidence            999999999998765433  2233333222 478999999999986431 1222 3444433337899999999999999


Q ss_pred             HHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHH
Q psy125          160 FLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTT  239 (385)
Q Consensus       160 ~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~  239 (385)
                      +..+.+.+.....-       ..+                           +       ......++++++|++||||||
T Consensus       157 ~~~i~~~l~~~~~~-------~~~---------------------------~-------~~~~~~~kvaivG~~gvGKST  195 (439)
T 1mky_A          157 LETIIKKLEEKGLD-------LES---------------------------K-------PEITDAIKVAIVGRPNVGKST  195 (439)
T ss_dssp             HHHHHHHHHHTTCC-------SSS---------------------------C-------CCCCSCEEEEEECSTTSSHHH
T ss_pred             HHHHHHhccccccc-------chh---------------------------c-------cccccCceEEEECCCCCCHHH
Confidence            99999887432100       000                           0       001134899999999999999


Q ss_pred             HHHHHhcCccccccccceeeEEEEE--EEEeCCeeEEEEEeeCCCccccCccc------------ccccccCcEEEEEEe
Q psy125          240 FVKRHLTGEFEKKYVATLGVEVHPL--VFHTNRGAIRFNVWDTAGQEKFGGLR------------DGYYIQGQCAIIMFD  305 (385)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~i~Dt~G~~~~~~~~------------~~~~~~~~~~ilv~d  305 (385)
                      |++++++..+ ....+..|++....  .+.+++.  .+.+|||||+.++....            ..+++.+|++++|+|
T Consensus       196 Lln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d  272 (439)
T 1mky_A          196 LFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLD  272 (439)
T ss_dssp             HHHHHHTSTT-EEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEE
T ss_pred             HHHHHhCCcc-cccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhCCEEEEEEe
Confidence            9999886543 23445555665433  3445554  57899999986544332            135778999999999


Q ss_pred             CCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          306 VTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       306 ~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      ++++.++++                                                 +++|||++|.||+++|..+++.
T Consensus       273 ~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~  352 (439)
T 1mky_A          273 ATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLA  352 (439)
T ss_dssp             TTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            998766554                                                 5789999999999999999987


Q ss_pred             HhcC
Q psy125          337 LIGD  340 (385)
Q Consensus       337 i~~~  340 (385)
                      +...
T Consensus       353 ~~~~  356 (439)
T 1mky_A          353 YASY  356 (439)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7553

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=100.00  E-value=4.7e-38  Score=300.02  Aligned_cols=280  Identities=19%  Similarity=0.182  Sum_probs=191.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCC--------ccccccchhhh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG--------QEKFGGLRDGY   78 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g--------~~~~~~~~~~~   78 (385)
                      |+.++|+|+|++|||||||+|+|++.. ...+.+++|+|++.......+.+..+.+|||||        ++.+......+
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~-~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGER-ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEE-EC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC-CcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            556799999999999999999976654 446778899999999999998889999999999        44455566778


Q ss_pred             hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125           79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (385)
                      +..+|++|+|+|..+...  ....++..+... .++|+++|+||+|+....  ....+++......++.+||+++.|+.+
T Consensus       100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~--~~~~e~~~lg~~~~~~iSA~~g~gv~~  174 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVT--AADEEVAKILYR-TKKPVVLAVNKLDNTEMR--ANIYDFYSLGFGEPYPISGTHGLGLGD  174 (456)
T ss_dssp             HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT-CCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTTHHH
T ss_pred             HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH-cCCCEEEEEECccchhhh--hhHHHHHHcCCCceEEeecccccchHH
Confidence            889999999999876433  233444444432 689999999999986432  122233444445778999999999999


Q ss_pred             HHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHH
Q psy125          159 PFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKT  238 (385)
Q Consensus       159 l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks  238 (385)
                      ++..+...+......                                             ......++++++|.+|||||
T Consensus       175 L~~~i~~~l~~~~~~---------------------------------------------~~~~~~~ki~ivG~~~vGKS  209 (456)
T 4dcu_A          175 LLDAVAEHFKNIPET---------------------------------------------KYNEEVIQFCLIGRPNVGKS  209 (456)
T ss_dssp             HHHHHHTTGGGSCSS---------------------------------------------CCCTTCEEEEEECSTTSSHH
T ss_pred             HHHHHHhhccccccc---------------------------------------------ccccccceeEEecCCCCCHH
Confidence            999887765321000                                             00123589999999999999


Q ss_pred             HHHHHHhcCccccccccceeeEEEE--EEEEeCCeeEEEEEeeCCC----------ccccCccccc-ccccCcEEEEEEe
Q psy125          239 TFVKRHLTGEFEKKYVATLGVEVHP--LVFHTNRGAIRFNVWDTAG----------QEKFGGLRDG-YYIQGQCAIIMFD  305 (385)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~-~~~~~~~~ilv~d  305 (385)
                      +|+++++.... ......+|++...  ..+..++  ..+.||||||          +++|..++.. +++.+|++|+|+|
T Consensus       210 slin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~--~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD  286 (456)
T 4dcu_A          210 SLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQ--QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLD  286 (456)
T ss_dssp             HHHHHHHTSTT-EEECC------CTTSEEEEETT--EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             HHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECC--ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEe
Confidence            99999885532 2233444555543  3344444  3689999999          6667666654 7899999999999


Q ss_pred             CCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          306 VTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       306 ~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      +++..+.++                                                 |++|||++|.||+++|.++++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~  366 (456)
T 4dcu_A          287 GEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKA  366 (456)
T ss_dssp             TTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHH
Confidence            998655444                                                 7899999999999999999998


Q ss_pred             HhcC
Q psy125          337 LIGD  340 (385)
Q Consensus       337 i~~~  340 (385)
                      +...
T Consensus       367 ~~~~  370 (456)
T 4dcu_A          367 SENH  370 (456)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7543

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.97  E-value=1.1e-29  Score=217.24  Aligned_cols=163  Identities=28%  Similarity=0.553  Sum_probs=137.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ++.+||+|||.+|||||||+++|+.+.+...+.++.|.++.......+...+.+.+|||+|++++..++..+++++++++
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            56799999999999999999999999999999999999998888888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|||++++.+|+++..|+..+... ..+.|++||+||+|+...+.  ..+...++...+..++++||++|.|++++|..|
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i  170 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  170 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence            999999999999999999888763 46789999999999976543  456677888889999999999999999999999


Q ss_pred             HHHHhc
Q psy125          164 ARKLIG  169 (385)
Q Consensus       164 ~~~l~~  169 (385)
                      ++.+..
T Consensus       171 ~~~i~~  176 (216)
T 4dkx_A          171 AAALPG  176 (216)
T ss_dssp             HHHC--
T ss_pred             HHHHHh
Confidence            998754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.96  E-value=5.4e-29  Score=215.15  Aligned_cols=208  Identities=88%  Similarity=1.394  Sum_probs=181.2

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCc
Q psy125            4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ   83 (385)
Q Consensus         4 ~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d   83 (385)
                      ....+.+||+++|.+|||||||+|+|+.+.+...+.++.|.++...........+.+.+|||||++.+...+..++.++|
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            34467899999999999999999998888888888999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           84 CAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        84 ~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      ++++|||++++.++..+..|+..+.....+.|+++|+||+|+.......+...+....+..++++||+++.|+++++.+|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  169 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  169 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999999888777999999999999976554444455667778899999999999999999999


Q ss_pred             HHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCC
Q psy125          164 ARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDD  211 (385)
Q Consensus       164 ~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~  211 (385)
                      ++.+...+.......+...+|....++.....+...+++.....++.+
T Consensus       170 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  217 (221)
T 3gj0_A          170 ARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDE  217 (221)
T ss_dssp             HHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHTC-----
T ss_pred             HHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhccCCCCC
Confidence            999999999888888888888889999988888888777665544443

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.95  E-value=1.2e-28  Score=210.93  Aligned_cols=121  Identities=30%  Similarity=0.595  Sum_probs=101.7

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      .+.+||+++|++|||||+|+++|+.+.|...|.+|+|.++..+.+.+++..+.+.||||+|+++|..+++.||++++++|
T Consensus        11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i   90 (216)
T 4dkx_A           11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV   90 (216)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred             CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence            35699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      +|||++++.||++                                                |+|||||+|.||+++|..|
T Consensus        91 lv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i  170 (216)
T 4dkx_A           91 VVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  170 (216)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHH
Confidence            9999999999998                                                8999999999999999999


Q ss_pred             HHHHhcCCC
Q psy125          334 ARKLIGDPN  342 (385)
Q Consensus       334 ~~~i~~~~~  342 (385)
                      ++.|....+
T Consensus       171 ~~~i~~~~~  179 (216)
T 4dkx_A          171 AAALPGMES  179 (216)
T ss_dssp             HHHC-----
T ss_pred             HHHHHhhhc
Confidence            999976543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=9.6e-26  Score=190.59  Aligned_cols=165  Identities=32%  Similarity=0.618  Sum_probs=144.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ++.+||+|+|++|||||||+|+|+++.+...+.++.+.++.......+...+.+.+|||||++.+...+..+++++|++|
T Consensus        13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   92 (195)
T 1x3s_A           13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   92 (195)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            35699999999999999999999998888888899998888888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|+|++++.++..+..|+..+....  .+.|+++|+||+|+..... ..+...++...+..++++||+++.|+++++.+|
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  172 (195)
T 1x3s_A           93 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  172 (195)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999998888988877643  4789999999999965433 344566777778899999999999999999999


Q ss_pred             HHHHhcCC
Q psy125          164 ARKLIGDP  171 (385)
Q Consensus       164 ~~~l~~~~  171 (385)
                      .+.+...+
T Consensus       173 ~~~~~~~~  180 (195)
T 1x3s_A          173 VEKIIQTP  180 (195)
T ss_dssp             HHHHHTSG
T ss_pred             HHHHHhhh
Confidence            99987653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.94  E-value=2.4e-25  Score=185.69  Aligned_cols=163  Identities=31%  Similarity=0.590  Sum_probs=141.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||.+.+...+..++.++|+++
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   86 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVI   86 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEE
Confidence            35699999999999999999999988888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      +|+|++++.++..+..|+..+.....+.|+++|+||+|+.....  ......+....+.+++++||+++.|+++++..|.
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  166 (181)
T 3tw8_B           87 VVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCIT  166 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            99999999999998889988887777899999999999876433  3445567777788999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       167 ~~~~~  171 (181)
T 3tw8_B          167 ELVLR  171 (181)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.94  E-value=2.2e-25  Score=183.90  Aligned_cols=163  Identities=31%  Similarity=0.591  Sum_probs=142.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      .++.+||+++|++|||||||+|+|+++.+...+.++.+.++...........+.+.+|||||++.+...+..++.++|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            45679999999999999999999999888888888999888888888888899999999999999888889999999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      ++|+|++++.++..+..|+..+... ..+.|+++|+||+|+.....  ..+...+....+.+++++||+++.|+++++.+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999998888888887764 35789999999999865332  34555677778889999999999999999999


Q ss_pred             HHHHHh
Q psy125          163 LARKLI  168 (385)
Q Consensus       163 i~~~l~  168 (385)
                      |++.+.
T Consensus       163 i~~~~~  168 (170)
T 1r2q_A          163 IAKKLP  168 (170)
T ss_dssp             HHHTSC
T ss_pred             HHHHHh
Confidence            988753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.94  E-value=4.6e-25  Score=183.39  Aligned_cols=165  Identities=31%  Similarity=0.666  Sum_probs=138.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      ..+.++|+++|++|||||||+|+++++.+...+.++.|.+........+...+.+.+|||||++.+...+..++.++|++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            44679999999999999999999999888888888888888777788888889999999999998888888999999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcchhh-hHHHHHHHH-hcCCeEEEEcCCCCCChHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKV-KAKSIVFHR-KKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~  158 (385)
                      ++|+|++++.++..+..|+..+....     .+.|+++|+||+|+..... ..+...+.. ....+++++||+++.|+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  163 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  163 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence            99999999999998888888876643     5789999999999864332 344455555 5667999999999999999


Q ss_pred             HHHHHHHHHhcC
Q psy125          159 PFLWLARKLIGD  170 (385)
Q Consensus       159 l~~~i~~~l~~~  170 (385)
                      ++..|++.+...
T Consensus       164 l~~~l~~~~~~~  175 (177)
T 1wms_A          164 AFEEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhh
Confidence            999999988654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.94  E-value=6.2e-25  Score=182.81  Aligned_cols=162  Identities=30%  Similarity=0.560  Sum_probs=141.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||++.+...+..++.++|+++
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence            34699999999999999999999998888888888898888888888888999999999999998888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|+|++++.++..+..|+..+.... .+.|+++|+||+|+...+.  ..+...+....+.+++++||+++.|+++++.+|
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  172 (179)
T 1z0f_A           93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  172 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999998888888877643 5789999999999965332  345566777788899999999999999999999


Q ss_pred             HHHHh
Q psy125          164 ARKLI  168 (385)
Q Consensus       164 ~~~l~  168 (385)
                      ++.+.
T Consensus       173 ~~~i~  177 (179)
T 1z0f_A          173 AKKIY  177 (179)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            98774

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.93  E-value=1.2e-24  Score=183.03  Aligned_cols=162  Identities=26%  Similarity=0.547  Sum_probs=141.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+|+|++|||||||+|+|+++.+...+.++.|.++...........+.+.+|||||++.+...+..++.++|++++
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~  100 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL  100 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence            46899999999999999999999988888888888888887777788889999999999999998899999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+.  ..+...+....+.+++++||+++.|+++++.+|+
T Consensus       101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  180 (189)
T 2gf9_A          101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV  180 (189)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999998888988877643 5789999999999865432  3445567777788999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       181 ~~i~~  185 (189)
T 2gf9_A          181 DVICE  185 (189)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88753

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.93  E-value=6e-26  Score=195.99  Aligned_cols=165  Identities=86%  Similarity=1.369  Sum_probs=147.0

Q ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125          221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA  300 (385)
Q Consensus       221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~  300 (385)
                      ....+||+++|.+|||||+|+++++.+.+...+.+++|+++....+.+++..+.+.||||||++++..++..+++++|++
T Consensus        12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   91 (221)
T 3gj0_A           12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCA   91 (221)
T ss_dssp             CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEE
Confidence            34579999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhhhh---------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          301 IIMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       301 ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |+|||++++.||++                                             |++|||++|.||+++|.+|++
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  171 (221)
T 3gj0_A           92 IIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  171 (221)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999877                                             899999999999999999999


Q ss_pred             HHhcCCCcccccCCCCCCCccccChhhhhHHHHHHHHhhccCCCCCCCCC
Q psy125          336 KLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL  385 (385)
Q Consensus       336 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (385)
                      .+...+.......++..++...+.....+..++.+.+....+.|++|+++
T Consensus       172 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  221 (221)
T 3gj0_A          172 KLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDDL  221 (221)
T ss_dssp             HHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHTC---------
T ss_pred             HHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhccCCCCCCCCC
Confidence            99999999888889999999999999999999999999999999988874

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.93  E-value=6.6e-25  Score=180.70  Aligned_cols=162  Identities=30%  Similarity=0.607  Sum_probs=141.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+++|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||++.+......++.++|++++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   83 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   83 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence            56899999999999999999999988888888888887777777778888999999999999988888999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      |+|++++.+++.+..|+..+.....+.|+++|+||+|+...+.  ..+...+....+.+++++||+++.|+++++.+|.+
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  163 (168)
T 1z2a_A           84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  163 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence            9999999999988889888877657899999999999865332  34455677777889999999999999999999998


Q ss_pred             HHhc
Q psy125          166 KLIG  169 (385)
Q Consensus       166 ~l~~  169 (385)
                      .+..
T Consensus       164 ~~~~  167 (168)
T 1z2a_A          164 KHLQ  167 (168)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            8753

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=3.8e-25  Score=182.43  Aligned_cols=161  Identities=30%  Similarity=0.590  Sum_probs=139.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ++.+||+++|++|||||||+|+|+++.+...+.++.+.++...........+.+.+|||||++.+...+..+++++|+++
T Consensus         1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1ek0_A            1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL   80 (170)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence            35789999999999999999999998888888899998888888888888899999999999998888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcch---h-h-hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR---K-V-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~---~-~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      +|+|++++.++..+..|+..+.... .+.|+++|+||+|+...   . . ......+....+.+++++||+++.|+++++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (170)
T 1ek0_A           81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999988888888877643 57899999999998653   1 1 234455666778899999999999999999


Q ss_pred             HHHHHHH
Q psy125          161 LWLARKL  167 (385)
Q Consensus       161 ~~i~~~l  167 (385)
                      .+|.+.+
T Consensus       161 ~~l~~~i  167 (170)
T 1ek0_A          161 LGIGEKI  167 (170)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHHH
Confidence            9988765

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.93  E-value=8.7e-25  Score=184.25  Aligned_cols=163  Identities=29%  Similarity=0.561  Sum_probs=137.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+|+|++|||||||+++|+++.+.....++.+.++.......+...+.+.+|||||++.+...+..++.++|++|
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            56799999999999999999999998888777788888887777788888899999999999999988999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|+|++++.+++.+..|+..+... ..+.|+++|+||+|+...+.  ..+...++...+..++++||+++.|+++++.+|
T Consensus        99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  178 (191)
T 2a5j_A           99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  178 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999988898887764 35789999999999965332  344556777778899999999999999999999


Q ss_pred             HHHHhc
Q psy125          164 ARKLIG  169 (385)
Q Consensus       164 ~~~l~~  169 (385)
                      ++.+..
T Consensus       179 ~~~i~~  184 (191)
T 2a5j_A          179 AKEIYR  184 (191)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988753

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.93  E-value=3e-25  Score=190.53  Aligned_cols=165  Identities=20%  Similarity=0.370  Sum_probs=138.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      .++.+||+|+|++|||||||+++|+++.+...+.++.+.++. .....+...+.+.+|||+|++.+..++..++.++|++
T Consensus        24 ~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  102 (214)
T 3q3j_B           24 VVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-ACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV  102 (214)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             ccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE-EEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEE
Confidence            356799999999999999999999999988888888887763 4456677789999999999999999999999999999


Q ss_pred             EEEEeCCChhhhhc-HHHHHHHHHHhcCCCCEEEEEeCCCCcch--------------hhhHHHHHHHHhcCC-eEEEEc
Q psy125           86 IIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIKDR--------------KVKAKSIVFHRKKNL-QYYDIS  149 (385)
Q Consensus        86 llV~d~~~~~~~~~-~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--------------~~~~~~~~~~~~~~~-~~~~~S  149 (385)
                      |+|||++++.++.. +..|+..+.....+.|+++|+||+|+...              ....+...++...+. .++++|
T Consensus       103 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  182 (214)
T 3q3j_B          103 LLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGS  182 (214)
T ss_dssp             EEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEec
Confidence            99999999999988 67898888877778999999999998652              223455667777788 999999


Q ss_pred             CCCCCC-hHHHHHHHHHHHhcCC
Q psy125          150 AKSNYN-FEKPFLWLARKLIGDP  171 (385)
Q Consensus       150 a~~~~g-i~~l~~~i~~~l~~~~  171 (385)
                      |+++.| ++++|..|++.+....
T Consensus       183 A~~g~g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          183 AFTSEKSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHC--
T ss_pred             cCCCcccHHHHHHHHHHHHhccC
Confidence            999998 9999999999987653

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.93  E-value=9e-25  Score=180.26  Aligned_cols=162  Identities=27%  Similarity=0.510  Sum_probs=141.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+|+|+++.+...+.++.|.++...........+.+.+|||||.+.+......++.++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45799999999999999999999999888888999999988888888888999999999999998888889999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|+|++++.++..+..|+..+... ..+.|+++|+||+|+...+.  ......+....+.+++++||+++.|+++++..|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            999999999998888888887764 46788999999999875432  344555667778899999999999999999999


Q ss_pred             HHHHh
Q psy125          164 ARKLI  168 (385)
Q Consensus       164 ~~~l~  168 (385)
                      .+.+.
T Consensus       164 ~~~i~  168 (170)
T 1z0j_A          164 SRRIP  168 (170)
T ss_dssp             HHHCC
T ss_pred             HHHHh
Confidence            88763

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=4.5e-25  Score=186.15  Aligned_cols=163  Identities=28%  Similarity=0.490  Sum_probs=142.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+|+|++|||||||+|+|+++.+...+.++.|.++...........+.+.+|||||.+.+...+..++.++|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            45799999999999999999999998888888999999998888888888999999999999999888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+.  ..+...++...+.+++++||+++.|+++++..|
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI  180 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            9999999999998888988877643 4789999999999865322  345666777778899999999999999999999


Q ss_pred             HHHHhc
Q psy125          164 ARKLIG  169 (385)
Q Consensus       164 ~~~l~~  169 (385)
                      .+.+..
T Consensus       181 ~~~i~~  186 (192)
T 2fg5_A          181 SRQIPP  186 (192)
T ss_dssp             HHTCC-
T ss_pred             HHHHHh
Confidence            987644

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.93  E-value=1.1e-24  Score=181.73  Aligned_cols=166  Identities=27%  Similarity=0.514  Sum_probs=139.9

Q ss_pred             CCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccC
Q psy125            3 AEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQG   82 (385)
Q Consensus         3 ~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~   82 (385)
                      ..+..+.+||+++|++|||||||+|+|+++.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++
T Consensus         3 ~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~   81 (181)
T 2fn4_A            3 DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAG   81 (181)
T ss_dssp             -CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhC
Confidence            456677899999999999999999999998888877888777665 4456677788999999999999988899999999


Q ss_pred             cEEEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125           83 QCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (385)
                      |++++|+|++++.++..+..|+..+...  ..+.|+++|+||+|+...+.  ..+...+....+..++++||+++.|+++
T Consensus        82 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~  161 (181)
T 2fn4_A           82 HGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE  161 (181)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence            9999999999999998888888877542  35789999999999875432  3445556677788999999999999999


Q ss_pred             HHHHHHHHHhc
Q psy125          159 PFLWLARKLIG  169 (385)
Q Consensus       159 l~~~i~~~l~~  169 (385)
                      ++.+|.+.+..
T Consensus       162 l~~~l~~~~~~  172 (181)
T 2fn4_A          162 AFEQLVRAVRK  172 (181)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=7.3e-25  Score=185.14  Aligned_cols=162  Identities=25%  Similarity=0.415  Sum_probs=135.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+++|+++.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++|+++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYA-VSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEE-EEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            35689999999999999999999998887777787776553 34555667799999999999999988999999999999


Q ss_pred             EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcCC-eEEEEcC
Q psy125           87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKNL-QYYDISA  150 (385)
Q Consensus        87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~Sa  150 (385)
                      +|||++++.++..+. .|+..+.....+.|+++|+||+|+....              ...+...++...+. +++++||
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  174 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA  174 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence            999999999998876 6888887766789999999999986532              12345556666666 8999999


Q ss_pred             CCCCChHHHHHHHHHHHhc
Q psy125          151 KSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~  169 (385)
                      +++.|+++++..|++.+..
T Consensus       175 ~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          175 LTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.93  E-value=1.2e-24  Score=178.88  Aligned_cols=161  Identities=30%  Similarity=0.538  Sum_probs=135.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      |+.+||+++|++|||||||+|+++++.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++|+++
T Consensus         1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   79 (167)
T 1c1y_A            1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999998887777788776554 44566777899999999999998888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhc-CCeEEEEcCCCCCChHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKK-NLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      +|+|++++.++..+..|+..+...  ..+.|+++|+||+|+...+.  ..+...+.... +.+++++||+++.|+++++.
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A           80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence            999999999999888888777663  35899999999999965432  33445566555 78999999999999999999


Q ss_pred             HHHHHHh
Q psy125          162 WLARKLI  168 (385)
Q Consensus       162 ~i~~~l~  168 (385)
                      +|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T 1c1y_A          160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9988763

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.93  E-value=1.6e-24  Score=181.17  Aligned_cols=163  Identities=30%  Similarity=0.515  Sum_probs=140.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      ..+.+||+|+|++|||||||+|+|+.+.+...+.++.+... ......+...+.+.+|||||++.+...+..++.++|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   93 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   93 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            35689999999999999999999999888888888888776 55667788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCC-CCCChHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAK-SNYNFEKPF  160 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~-~~~gi~~l~  160 (385)
                      ++|||++++.+++.+..|+..+...  ..+.|+++|+||+|+...+.  ..+...+....+.+++++||+ ++.|+++++
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~  173 (183)
T 3kkq_A           94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF  173 (183)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHH
Confidence            9999999999999988888887652  36789999999999865322  445566777778999999999 999999999


Q ss_pred             HHHHHHHhc
Q psy125          161 LWLARKLIG  169 (385)
Q Consensus       161 ~~i~~~l~~  169 (385)
                      ..|++.+.+
T Consensus       174 ~~l~~~i~~  182 (183)
T 3kkq_A          174 HDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999987743

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.93  E-value=7.8e-25  Score=182.79  Aligned_cols=163  Identities=23%  Similarity=0.327  Sum_probs=140.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+|+|+++.+...+.++.+.++ ......+...+.+.+|||||++.+......++.++|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            3579999999999999999999998888888889988877 556677888899999999999999888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      +|||++++.+++.+..|+..+....  .+.|+++|+||+|+...+.  ..+...+....+.+++++||+++.|+++++..
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999999888888876643  4789999999999864332  45566678888889999999999999999999


Q ss_pred             HHHHHhcC
Q psy125          163 LARKLIGD  170 (385)
Q Consensus       163 i~~~l~~~  170 (385)
                      |++.+...
T Consensus       163 l~~~~~~~  170 (181)
T 3t5g_A          163 IILEAEKM  170 (181)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHh
Confidence            99988654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.93  E-value=8.9e-25  Score=182.33  Aligned_cols=163  Identities=31%  Similarity=0.544  Sum_probs=141.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+|+|+++.+.....++.+.++...........+.+.+|||||++.+...+..++.++|+++
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   89 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   89 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence            56799999999999999999999998888888888888888888888888899999999999998888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.....  ..+...+....+.+++++||+++.|+++++.+|
T Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  169 (181)
T 2efe_B           90 IVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI  169 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            9999999999988888888877643 4789999999999865332  345566777778899999999999999999999


Q ss_pred             HHHHhc
Q psy125          164 ARKLIG  169 (385)
Q Consensus       164 ~~~l~~  169 (385)
                      ++.+..
T Consensus       170 ~~~~~~  175 (181)
T 2efe_B          170 ARRLPR  175 (181)
T ss_dssp             HHTCC-
T ss_pred             HHHHHh
Confidence            987644

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=6.4e-25  Score=186.45  Aligned_cols=162  Identities=34%  Similarity=0.628  Sum_probs=140.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+|+|++|||||||+++|+++.+...+.++.+.+........+...+.+.+|||||++.+......+++++|++++
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL  104 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999988888888888888877777788888999999999999888888899999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |||++++.+++.+..|+..+.... .+.|+++|+||+|+...+.  ..+...+....+.+++++||+++.|+++++..|+
T Consensus       105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  184 (201)
T 2ew1_A          105 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA  184 (201)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999889988877643 4789999999999865332  3345556667788999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       185 ~~i~~  189 (201)
T 2ew1_A          185 CRLIS  189 (201)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.93  E-value=8.5e-25  Score=180.47  Aligned_cols=162  Identities=31%  Similarity=0.567  Sum_probs=133.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+|+++++.+...+.++.+.+........+...+.+.+|||||++.+......++.++|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            35689999999999999999999998888888888888877777777888899999999999988888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+.  ..+...+....+.+++++||+++.|+++++.+|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  163 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999988888887776533 5789999999999865432  345566777778899999999999999999999


Q ss_pred             HHHHh
Q psy125          164 ARKLI  168 (385)
Q Consensus       164 ~~~l~  168 (385)
                      ++.+.
T Consensus       164 ~~~~~  168 (170)
T 1z08_A          164 CKRMI  168 (170)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.93  E-value=1.3e-24  Score=183.47  Aligned_cols=169  Identities=29%  Similarity=0.540  Sum_probs=139.4

Q ss_pred             CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeE-EEEEEeCCe---------eEEEEEEeCCCccc
Q psy125            1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLVFHTNRG---------AIRFNVWDTAGQEK   70 (385)
Q Consensus         1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~-~~~~~~~~~---------~~~~~i~Dt~g~~~   70 (385)
                      |+.....+.+||+|+|++|||||||+|+|+++.+...+.++.+.+.. .........         .+.+.+|||||++.
T Consensus         3 m~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~   82 (195)
T 3bc1_A            3 MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER   82 (195)
T ss_dssp             ---CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG
T ss_pred             CcccccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH
Confidence            44434456799999999999999999999998888778888887776 445555554         78999999999998


Q ss_pred             cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEE
Q psy125           71 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYY  146 (385)
Q Consensus        71 ~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~  146 (385)
                      +......++.++|++|+|+|++++.++..+..|+..+....  .+.|+++|+||+|+...+.  ......+....+.+++
T Consensus        83 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  162 (195)
T 3bc1_A           83 FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF  162 (195)
T ss_dssp             GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEE
Confidence            88888889999999999999999999998888988877654  5889999999999865332  3445566667788999


Q ss_pred             EEcCCCCCChHHHHHHHHHHHhc
Q psy125          147 DISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       147 ~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      ++||+++.|+++++..|.+.+..
T Consensus       163 ~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          163 ETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999988743

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.93  E-value=1.2e-24  Score=185.13  Aligned_cols=165  Identities=27%  Similarity=0.543  Sum_probs=142.3

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      +....+||+|+|++|||||||+++|+++.+...+.++.|.++...........+.+.+|||||.+.+...+..++.++|+
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   83 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMG   83 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence            33457999999999999999999999988888888888988888888888889999999999999888888899999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      +|+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+.  ......+....+.+++++||+++.|+++++.
T Consensus        84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (203)
T 1zbd_A           84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE  163 (203)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence            999999999999988888888877643 5789999999999865332  3445566677788999999999999999999


Q ss_pred             HHHHHHhc
Q psy125          162 WLARKLIG  169 (385)
Q Consensus       162 ~i~~~l~~  169 (385)
                      +|.+.+..
T Consensus       164 ~l~~~i~~  171 (203)
T 1zbd_A          164 RLVDVICE  171 (203)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99987754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.93  E-value=9.4e-25  Score=181.68  Aligned_cols=165  Identities=25%  Similarity=0.464  Sum_probs=137.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC-eeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      .++.+||+++|++|||||||+++|+++.+...+.++.|.+.......... ..+.+.+|||||++.+...+..++.++|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            35679999999999999999999998887777778888766666666665 57899999999999998889999999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHhc---CCCC-EEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRVC---ENIP-IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~~---~~~~-~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (385)
                      +++|+|++++.+++.+..|+..+....   ...| +++|+||+|+...+.  ..+...+....+.+++++||+++.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999988888887776532   2556 789999999865332  3445566677788999999999999999


Q ss_pred             HHHHHHHHHhcC
Q psy125          159 PFLWLARKLIGD  170 (385)
Q Consensus       159 l~~~i~~~l~~~  170 (385)
                      ++.+|++.+...
T Consensus       163 l~~~l~~~~~~~  174 (178)
T 2hxs_A          163 CFQKVAAEILGI  174 (178)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhh
Confidence            999999988654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.93  E-value=8.3e-25  Score=185.90  Aligned_cols=163  Identities=34%  Similarity=0.568  Sum_probs=132.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+|+|++|||||||+++|+++.+...+.++.+.++.......+...+.+.+|||||++.+...+..+++++|++|+
T Consensus        28 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  107 (201)
T 2hup_A           28 FLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIL  107 (201)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEE
Confidence            46899999999999999999999888877777888877777777777778999999999999988888899999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      |||++++.+++.+..|+..+.... .+.|+++|+||+|+...+.  ..+...++...+. .++++||+++.|+++++.+|
T Consensus       108 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  187 (201)
T 2hup_A          108 AYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRV  187 (201)
T ss_dssp             EEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999888988887654 6789999999999975322  3455667777788 99999999999999999999


Q ss_pred             HHHHhcC
Q psy125          164 ARKLIGD  170 (385)
Q Consensus       164 ~~~l~~~  170 (385)
                      ++.+...
T Consensus       188 ~~~i~~~  194 (201)
T 2hup_A          188 ATELIMR  194 (201)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.93  E-value=1.1e-24  Score=183.39  Aligned_cols=164  Identities=28%  Similarity=0.535  Sum_probs=137.3

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc-cchhhhhccCc
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-GLRDGYYIQGQ   83 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~-~~~~~~~~~~d   83 (385)
                      +.++.+||+|+|++|||||||+|+|+++.+...+.++.+.++.......+...+.+.+|||||.+.+. ..+..++.++|
T Consensus        16 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d   95 (189)
T 1z06_A           16 SRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVH   95 (189)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCC
Confidence            34567999999999999999999999988888888888888877778888888999999999998887 77888999999


Q ss_pred             EEEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCC---CCh
Q psy125           84 CAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSN---YNF  156 (385)
Q Consensus        84 ~illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~---~gi  156 (385)
                      ++|+|+|++++.++..+..|+..+...  ..+.|+++|+||+|+...+.  ......+....+.+++++||+++   .|+
T Consensus        96 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i  175 (189)
T 1z06_A           96 AVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHV  175 (189)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCH
Confidence            999999999999999988898888775  35789999999999965432  34455667777889999999999   999


Q ss_pred             HHHHHHHHHHHh
Q psy125          157 EKPFLWLARKLI  168 (385)
Q Consensus       157 ~~l~~~i~~~l~  168 (385)
                      ++++..|++.+.
T Consensus       176 ~~l~~~l~~~i~  187 (189)
T 1z06_A          176 EAIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHHC----
T ss_pred             HHHHHHHHHHHh
Confidence            999999887653

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.93  E-value=1.9e-24  Score=182.40  Aligned_cols=162  Identities=29%  Similarity=0.540  Sum_probs=141.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+|+|++|||||||+|+|+++.+...+.++.|.++...........+.+.+|||||.+.+...+..++.++|++|+
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~  103 (193)
T 2oil_A           24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALL  103 (193)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            46999999999999999999999988888888888888888878888889999999999999998889999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |+|++++.++..+..|+..+.... .+.|+++|+||+|+...+.  ..+...++...+..++++||+++.|+++++..|+
T Consensus       104 v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  183 (193)
T 2oil_A          104 VFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVL  183 (193)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999988888888876643 4789999999999865432  3445566777788999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       184 ~~i~~  188 (193)
T 2oil_A          184 KEIFA  188 (193)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88753

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.93  E-value=2.6e-24  Score=181.95  Aligned_cols=162  Identities=30%  Similarity=0.599  Sum_probs=143.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+|+|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||++.+...+..++.++|++++
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   94 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   94 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence            46899999999999999999999998888888888888888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+.  ......+....+.+++++||+++.|+++++.+|+
T Consensus        95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  174 (196)
T 3tkl_A           95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  174 (196)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999888988877643 4789999999999865433  3455667778888999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       175 ~~i~~  179 (196)
T 3tkl_A          175 AEIKK  179 (196)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98755

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.93  E-value=1.4e-24  Score=178.56  Aligned_cols=161  Identities=27%  Similarity=0.512  Sum_probs=133.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ++.+||+++|++|||||||+|+++++.+...+.++.+.+.. .....+...+.+.+|||||.+.+...+..++.++|+++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE-EEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            56799999999999999999999988877777777776553 33456777889999999999988888889999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      +|+|++++.++..+..|+..+.....  +.|+++|+||+|+...+.  ..+...+....+.+++++||+++.|+++++.+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            99999999999888888888776543  799999999999865432  34556667777889999999999999999999


Q ss_pred             HHHHHh
Q psy125          163 LARKLI  168 (385)
Q Consensus       163 i~~~l~  168 (385)
                      |.+.+.
T Consensus       161 l~~~i~  166 (168)
T 1u8z_A          161 LMREIR  166 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.93  E-value=1.5e-24  Score=183.27  Aligned_cols=163  Identities=25%  Similarity=0.439  Sum_probs=139.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+++|+++.+...+.++.+.+... ....+...+.+.+|||||++.+...+..++.++|+++
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            456999999999999999999999998888888888877664 4566778899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcch----hhhHHHHHHHHhcCCe-EEEEcCCCCCChHHHH
Q psy125           87 IMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDR----KVKAKSIVFHRKKNLQ-YYDISAKSNYNFEKPF  160 (385)
Q Consensus        87 lV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~----~~~~~~~~~~~~~~~~-~~~~Sa~~~~gi~~l~  160 (385)
                      +|||++++.++..+ ..|+..+.....+.|+++|+||+|+...    ....+...++...+.. ++++||+++.|+++++
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  179 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF  179 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHH
Confidence            99999999999886 5688877776678999999999998642    1244555677777776 9999999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          161 LWLARKLIGD  170 (385)
Q Consensus       161 ~~i~~~l~~~  170 (385)
                      ..|++.+...
T Consensus       180 ~~l~~~i~~~  189 (194)
T 3reg_A          180 EKSVDCIFSN  189 (194)
T ss_dssp             HHHHHHHHCS
T ss_pred             HHHHHHHHhc
Confidence            9999988664

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.93  E-value=4.3e-25  Score=184.71  Aligned_cols=162  Identities=28%  Similarity=0.589  Sum_probs=111.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+++|++|||||||+++|+++.+...+.++.+.+........+...+.+.+|||||++.+...+..++.++|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   86 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence            56999999999999999999988887777777888877777777777788999999999999888888899999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |+|++++.+++.+..|+..+... ..+.|+++|+||+|+...+.  ..+...++...+.+++++||+++.|+++++..|+
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  166 (183)
T 2fu5_C           87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  166 (183)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            99999999998888888887764 35789999999999865322  3455667777788999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       167 ~~i~~  171 (183)
T 2fu5_C          167 RDIKA  171 (183)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88743

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.93  E-value=1.4e-24  Score=182.37  Aligned_cols=160  Identities=19%  Similarity=0.306  Sum_probs=133.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+|+|++|||||||+++|+++.+...+.++.+.++. .....+...+.+.+|||+|++.+..+ ..++.++|+++
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS-SEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee-EEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            56799999999999999999999999888888888887663 34566788899999999999887765 56889999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcC-CCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISA-KSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa-~~~~gi~~l  159 (385)
                      +|||++++.+++.+..|+..+....    .+.|+++|+||+|+...+.  ..+...++...+..++++|| +++.|++++
T Consensus        97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~l  176 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV  176 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHH
Confidence            9999999999999888988877643    6899999999999865432  34556677777889999999 899999999


Q ss_pred             HHHHHHHHh
Q psy125          160 FLWLARKLI  168 (385)
Q Consensus       160 ~~~i~~~l~  168 (385)
                      +..|++.+.
T Consensus       177 f~~l~~~i~  185 (187)
T 3c5c_A          177 FHEAVREAR  185 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=183.84  Aligned_cols=165  Identities=22%  Similarity=0.268  Sum_probs=130.8

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc-chhhhhccCc
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-LRDGYYIQGQ   83 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-~~~~~~~~~d   83 (385)
                      +....+||+|+|++|||||||+++|++........++.+.+........+...+.+.+|||+|++.+.. ++..++..+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            335679999999999999999999765433333344445444555566788889999999999987654 6677888999


Q ss_pred             EEEEEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125           84 CAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        84 ~illV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      ++|+|||++++.++..+..|+..+....  .+.|+++|+||+|+...+.  ..+...++...+..++++||+++.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            9999999999999999999998877643  4789999999999965332  34455677777789999999999999999


Q ss_pred             HHHHHHHHhc
Q psy125          160 FLWLARKLIG  169 (385)
Q Consensus       160 ~~~i~~~l~~  169 (385)
                      +..|++.+..
T Consensus       179 f~~l~~~i~~  188 (195)
T 3cbq_A          179 FEGAVRQIRL  188 (195)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.93  E-value=2.5e-24  Score=183.66  Aligned_cols=168  Identities=29%  Similarity=0.570  Sum_probs=143.0

Q ss_pred             CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc
Q psy125            1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI   80 (385)
Q Consensus         1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~   80 (385)
                      |+..+ ...+||+|+|++|||||||+++|+++.+...+.++.+.++.......+...+.+.+|||||++.+...+..++.
T Consensus         1 M~~~~-~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   79 (206)
T 2bcg_Y            1 MNSEY-DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR   79 (206)
T ss_dssp             --CCC-SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT
T ss_pred             CCccc-CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc
Confidence            44332 35699999999999999999999999888888888888888777888888899999999999999888999999


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (385)
                      ++|++|+|+|++++.++..+..|+..+.... .+.|+++|+||+|+...+.  ......+....+.+++++||+++.|++
T Consensus        80 ~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  159 (206)
T 2bcg_Y           80 GSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVE  159 (206)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHH
T ss_pred             CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence            9999999999999999998888888877643 5789999999999975332  344556677778899999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy125          158 KPFLWLARKLIG  169 (385)
Q Consensus       158 ~l~~~i~~~l~~  169 (385)
                      +++.+|.+.+..
T Consensus       160 ~l~~~l~~~i~~  171 (206)
T 2bcg_Y          160 DAFLTMARQIKE  171 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.93  E-value=1.5e-24  Score=178.93  Aligned_cols=162  Identities=26%  Similarity=0.564  Sum_probs=133.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+++|++|||||||+|+++++.+...+.++.+.+............+.+.+|||||.+.+...+..++.++|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            35899999999999999999999988877778888877777777777778999999999999988888999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      |+|++++.++..+..|+..+.... .+.|+++|+||+|+..... ......+....+.+++++||+++.|+++++..|.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  161 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  161 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999999988888888877643 5789999999999854332 33445566677789999999999999999999999


Q ss_pred             HHhc
Q psy125          166 KLIG  169 (385)
Q Consensus       166 ~l~~  169 (385)
                      .+..
T Consensus       162 ~~~~  165 (170)
T 1g16_A          162 LIQE  165 (170)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.93  E-value=1.7e-24  Score=184.70  Aligned_cols=164  Identities=31%  Similarity=0.646  Sum_probs=139.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      ..+.+||+|+|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||++.+...+..++.++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45679999999999999999999999888888888888888777777788889999999999999988888999999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcchhh-hHHHHHHHH-hcCCeEEEEcCCCCCChHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKV-KAKSIVFHR-KKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~-~~~~~~~~~Sa~~~~gi~~  158 (385)
                      |+|+|++++.++..+..|+..+....     .+.|+++|+||+|+..... ......+.. ..+.+++++||+++.|+++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  164 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ  164 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence            99999999999998888888776643     4789999999999874332 334444555 5677999999999999999


Q ss_pred             HHHHHHHHHhc
Q psy125          159 PFLWLARKLIG  169 (385)
Q Consensus       159 l~~~i~~~l~~  169 (385)
                      ++.+|++.+..
T Consensus       165 l~~~l~~~~~~  175 (207)
T 1vg8_A          165 AFQTIARNALK  175 (207)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.93  E-value=2.1e-24  Score=180.98  Aligned_cols=163  Identities=31%  Similarity=0.599  Sum_probs=141.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+|+|+++.+...+.++.+.+........+...+.+.+|||||++.+...+..++.++|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            45699999999999999999999998888888888888877777777888899999999999988888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|+|++++.++..+..|+..+... ..+.|+++|+||+|+...+.  ..+...++...+.+++++||+++.|+++++..|
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  167 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  167 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            999999999999988888877664 35789999999999865322  345566777788899999999999999999999


Q ss_pred             HHHHhc
Q psy125          164 ARKLIG  169 (385)
Q Consensus       164 ~~~l~~  169 (385)
                      ++.+..
T Consensus       168 ~~~~~~  173 (186)
T 2bme_A          168 ARKILN  173 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988754

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.93  E-value=2.3e-24  Score=177.76  Aligned_cols=161  Identities=22%  Similarity=0.280  Sum_probs=122.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc-chhhhhccCcEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-LRDGYYIQGQCAII   87 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-~~~~~~~~~d~ill   87 (385)
                      .+||+++|++|||||||+++|++........++.+.+........+...+.+.+|||+|++.+.. ....++.++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            47999999999999999999887766655555666666666677788899999999999988765 66777889999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      |||++++.+++.+..|+..+.....  +.|+++|+||+|+.....  ..+...++...+.+++++||+++.|+++++..+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999988877544  899999999999874332  345566777888899999999999999999999


Q ss_pred             HHHHhc
Q psy125          164 ARKLIG  169 (385)
Q Consensus       164 ~~~l~~  169 (385)
                      ++.+..
T Consensus       162 ~~~i~~  167 (169)
T 3q85_A          162 VRQIRL  167 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.93  E-value=2.5e-24  Score=180.29  Aligned_cols=159  Identities=20%  Similarity=0.345  Sum_probs=130.6

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCc
Q psy125            4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ   83 (385)
Q Consensus         4 ~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d   83 (385)
                      .+.++.+||+|+|++|||||||+++++.+.+...+.++.+ .+ ......++..+.+.+|||+|++.+.     ++.++|
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~   87 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD   87 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence            3447789999999999999999999999988877777744 33 3566777888999999999998654     778999


Q ss_pred             EEEEEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcc--h--hhhHHHHHHHHhcC-CeEEEEcCCCCCCh
Q psy125           84 CAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKD--R--KVKAKSIVFHRKKN-LQYYDISAKSNYNF  156 (385)
Q Consensus        84 ~illV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~--~--~~~~~~~~~~~~~~-~~~~~~Sa~~~~gi  156 (385)
                      ++++|||++++.+++.+..|+..+....  .+.|+++|+||+|+..  .  ....+...+....+ ..++++||+++.|+
T Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv  167 (184)
T 3ihw_A           88 AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNV  167 (184)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCH
Confidence            9999999999999999888998887643  4789999999999842  1  12344556666665 79999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy125          157 EKPFLWLARKLIG  169 (385)
Q Consensus       157 ~~l~~~i~~~l~~  169 (385)
                      +++|.+|++.+..
T Consensus       168 ~~lf~~l~~~i~~  180 (184)
T 3ihw_A          168 ERVFQDVAQKVVA  180 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=3.4e-24  Score=178.63  Aligned_cols=164  Identities=28%  Similarity=0.601  Sum_probs=131.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCC-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      .+.+||+++|++|||||||+|+|+++.+. ..+.++.+.+........+...+.+.+|||||++.+...+..++.++|++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   87 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   87 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence            56799999999999999999999888774 45667788777777777788889999999999999888888899999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      ++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.....  ..+...+....+.+++++||+++.|+++++.+
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  167 (180)
T 2g6b_A           88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA  167 (180)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999998888988877654 5789999999999875332  33445566667789999999999999999999


Q ss_pred             HHHHHhcC
Q psy125          163 LARKLIGD  170 (385)
Q Consensus       163 i~~~l~~~  170 (385)
                      |.+.+...
T Consensus       168 l~~~~~~~  175 (180)
T 2g6b_A          168 IAKELKRR  175 (180)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHH
Confidence            99987643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.4e-24  Score=183.22  Aligned_cols=163  Identities=26%  Similarity=0.581  Sum_probs=132.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ...+||+|+|++|||||||+|+|+++.+...+.++.+.+........+...+.+.+|||||.+.+...+..++.++|++|
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            45689999999999999999999888887778888888888777878888899999999999988888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHh-cCCeEEEEcCCCCCChHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRK-KNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      +|+|++++.+++.+..|+..+.... .+.|+++|+||+|+...+.  ..+...+... .+..++++||+++.|+++++..
T Consensus       104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  183 (192)
T 2il1_A          104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK  183 (192)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999888887776643 4789999999999865432  2344455555 3679999999999999999999


Q ss_pred             HHHHHhc
Q psy125          163 LARKLIG  169 (385)
Q Consensus       163 i~~~l~~  169 (385)
                      |.+.+..
T Consensus       184 l~~~i~~  190 (192)
T 2il1_A          184 LVDDILK  190 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.93  E-value=3e-24  Score=182.49  Aligned_cols=164  Identities=26%  Similarity=0.448  Sum_probs=135.7

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCc
Q psy125            4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ   83 (385)
Q Consensus         4 ~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d   83 (385)
                      .|....+||+++|++|||||||+++++++.+...+.++.+.+.... ...+...+.+.+|||||++.+...+..++.++|
T Consensus        20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   98 (201)
T 2gco_A           20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD   98 (201)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE-EEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE-EEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence            4556679999999999999999999999888777777777665533 566777899999999999999888889999999


Q ss_pred             EEEEEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEE
Q psy125           84 CAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYD  147 (385)
Q Consensus        84 ~illV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~  147 (385)
                      ++++|||++++.++..+ ..|+..+.....+.|+++|+||+|+.....              ..+...++...+. .+++
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (201)
T 2gco_A           99 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE  178 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence            99999999999999887 567777776667899999999999865321              2234456666666 8999


Q ss_pred             EcCCCCCChHHHHHHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      +||+++.|+++++..|++.+.
T Consensus       179 ~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          179 CSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHH
T ss_pred             eeCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999998764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.93  E-value=2.5e-24  Score=179.12  Aligned_cols=162  Identities=28%  Similarity=0.557  Sum_probs=139.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ++.+||+++|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||.+.+...+..++.++|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            45699999999999999999999988888888888888777777778888899999999999998888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|+|++++.++..+..|+..+.... .+.|+++|+||+|+...+.  ..+...+....+.+++++||+++.|+++++..|
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  171 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  171 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999998888888776633 5789999999999865433  344555666778899999999999999999999


Q ss_pred             HHHHh
Q psy125          164 ARKLI  168 (385)
Q Consensus       164 ~~~l~  168 (385)
                      .+.+.
T Consensus       172 ~~~~~  176 (179)
T 2y8e_A          172 AAALP  176 (179)
T ss_dssp             HHTCC
T ss_pred             HHHHh
Confidence            88653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.93  E-value=3e-24  Score=179.90  Aligned_cols=164  Identities=28%  Similarity=0.508  Sum_probs=136.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      +++.+||+++|++|||||||+++|+++.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++|++
T Consensus         2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   80 (186)
T 1mh1_A            2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (186)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeE-EEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence            356799999999999999999999988887777777765543 3456677889999999999999988888899999999


Q ss_pred             EEEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEEc
Q psy125           86 IIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDIS  149 (385)
Q Consensus        86 llV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~S  149 (385)
                      ++|+|++++.++..+. .|+..+.....+.|+++|+||+|+.....              ..+...+....+. +++++|
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            9999999999998876 68887777666899999999999864321              2234456666665 999999


Q ss_pred             CCCCCChHHHHHHHHHHHhcC
Q psy125          150 AKSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~  170 (385)
                      |+++.|+++++..|.+.+...
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~  181 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCP  181 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCccCHHHHHHHHHHHHhcc
Confidence            999999999999999998654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.93  E-value=2e-24  Score=185.08  Aligned_cols=166  Identities=28%  Similarity=0.492  Sum_probs=137.0

Q ss_pred             CCC-CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccC
Q psy125            4 EMD-MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQG   82 (385)
Q Consensus         4 ~~~-~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~   82 (385)
                      .|+ .+.+||+++|++|||||||+++|+.+.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++
T Consensus         3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   81 (212)
T 2j0v_A            3 HMSVSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS-ANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGA   81 (212)
T ss_dssp             CCSCCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE-EEEECSSCEEEEEEECCCCCCCCCC--CGGGTTC
T ss_pred             CCCcCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE-EEEEECCEEEEEEEEECCCcHHHHHHHHhhccCC
Confidence            444 46799999999999999999999998887777788876553 3455677789999999999999998888999999


Q ss_pred             cEEEEEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh----------hHHHHHHHHhcCC-eEEEEcC
Q psy125           83 QCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV----------KAKSIVFHRKKNL-QYYDISA  150 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~-~~~~~Sa  150 (385)
                      |++|+|||++++.++..+. .|+..+.....+.|+++|+||+|+.....          ..+...+....+. +++++||
T Consensus        82 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  161 (212)
T 2j0v_A           82 DIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSS  161 (212)
T ss_dssp             SEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccC
Confidence            9999999999999998876 68888877667899999999999865432          3344556666665 9999999


Q ss_pred             CCCCChHHHHHHHHHHHhcC
Q psy125          151 KSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~  170 (385)
                      +++.|+++++..|++.+...
T Consensus       162 ~~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          162 KTQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             TTCTTHHHHHHHHHHHHHCC
T ss_pred             CCCCCHHHHHHHHHHHHhhh
Confidence            99999999999999988654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.93  E-value=1.4e-24  Score=184.14  Aligned_cols=163  Identities=30%  Similarity=0.526  Sum_probs=129.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+|+|++|||||||+|+|+++.+...+.++.|.++.......+...+.+.+|||||.+.+...+..++.++|++|
T Consensus        26 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  105 (199)
T 2p5s_A           26 QKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL  105 (199)
T ss_dssp             --CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence            45799999999999999999999998888888889998888888888888999999999999988888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcch-------hh-hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR-------KV-KAKSIVFHRKKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~-------~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (385)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+...       .. ......++...+.+++++||+++.|++
T Consensus       106 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~  185 (199)
T 2p5s_A          106 LLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIV  185 (199)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHH
T ss_pred             EEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHH
Confidence            9999999999999888888776543 47899999999998632       11 234455666778899999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy125          158 KPFLWLARKLIG  169 (385)
Q Consensus       158 ~l~~~i~~~l~~  169 (385)
                      +++..|++.+..
T Consensus       186 el~~~l~~~i~~  197 (199)
T 2p5s_A          186 EAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHh
Confidence            999999988753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=3.4e-25  Score=186.78  Aligned_cols=162  Identities=25%  Similarity=0.564  Sum_probs=142.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+|+|++|||||||+|+|+++.+...+.++.+.++...........+.+.+|||||.+.+...+..++.++|++++
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  101 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL  101 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence            46899999999999999999999988888888888888888888888888999999999999888888999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |||++++.+++.+..|+..+.... .+.|+++|+||+|+...+.  ..+...+....+.+++++||+++.|+++++..|+
T Consensus       102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  181 (191)
T 3dz8_A          102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV  181 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999889988887644 5789999999999865432  3445567777788999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       182 ~~i~~  186 (191)
T 3dz8_A          182 DAICD  186 (191)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.92  E-value=2.6e-24  Score=179.54  Aligned_cols=164  Identities=27%  Similarity=0.571  Sum_probs=125.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      ..+.++|+++|++|||||||+++++++.+...+.++.+.+......... ...+.+.+|||||++.+...+..++.++|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            3567999999999999999999999988888888888877777766666 456899999999999888888889999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcchh---hhHHHHHHHH-hcCCeEEEEcCCCCCC
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRK---VKAKSIVFHR-KKNLQYYDISAKSNYN  155 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~~---~~~~~~~~~~-~~~~~~~~~Sa~~~~g  155 (385)
                      +++|+|++++.+++.+..|+..+....     .+.|+++|+||+|+....   ...+...+.. ....+++++||+++.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            999999999999999888888776643     578999999999985432   1334455555 4667999999999999


Q ss_pred             hHHHHHHHHHHHhc
Q psy125          156 FEKPFLWLARKLIG  169 (385)
Q Consensus       156 i~~l~~~i~~~l~~  169 (385)
                      +++++.+|.+.+..
T Consensus       165 i~~l~~~l~~~~~~  178 (182)
T 1ky3_A          165 VDTAFEEIARSALQ  178 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987753

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.92  E-value=3.1e-24  Score=179.91  Aligned_cols=164  Identities=27%  Similarity=0.502  Sum_probs=136.4

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      .+++.+||+++|++|||||||+|+|+++.+...+.++.+.... .........+.+.+|||||++.+...+..++..+|+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   92 (187)
T 2a9k_A           14 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG   92 (187)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEE-EEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCE
Confidence            3467899999999999999999999988877777777775553 334567778899999999999888888899999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      +++|||++++.++..+..|+..+.....  +.|+++|+||+|+...+.  ..+...++...+.+++++||+++.|+++++
T Consensus        93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  172 (187)
T 2a9k_A           93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF  172 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHH
Confidence            9999999999999888888888777544  789999999999865432  345566777778899999999999999999


Q ss_pred             HHHHHHHhc
Q psy125          161 LWLARKLIG  169 (385)
Q Consensus       161 ~~i~~~l~~  169 (385)
                      .+|.+.+..
T Consensus       173 ~~l~~~i~~  181 (187)
T 2a9k_A          173 FDLMREIRA  181 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988743

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.92  E-value=2.2e-24  Score=177.18  Aligned_cols=161  Identities=26%  Similarity=0.496  Sum_probs=134.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      |+.+||+++|++|||||||+|+++++.+...+.++.+... ..........+.+.+|||||++.+...+..++.++|+++
T Consensus         1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i   79 (167)
T 1kao_A            1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4679999999999999999999998888777777766444 455667778889999999999988888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      +|+|++++.+++.+..|+..+....  .+.|+++|+||+|+...+.  ..+...+....+.+++++||+++.|+++++..
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  159 (167)
T 1kao_A           80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence            9999999999988888887776643  4799999999999865332  33445566667889999999999999999999


Q ss_pred             HHHHHh
Q psy125          163 LARKLI  168 (385)
Q Consensus       163 i~~~l~  168 (385)
                      |.+.+.
T Consensus       160 l~~~~~  165 (167)
T 1kao_A          160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            988763

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=1.8e-24  Score=183.81  Aligned_cols=163  Identities=20%  Similarity=0.318  Sum_probs=135.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+|+|++|||||||+|+|+++.+...+.++.+.+. ..........+.+.+|||||.+.+...+..++.++|+++
T Consensus        22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  100 (201)
T 3oes_A           22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYV  100 (201)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEE
Confidence            4679999999999999999999999988888888888766 555556667899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      +|||++++.+++.+..|+..+...  ..+.|+++|+||+|+.....  ..+...+....+.+++++||+++.|+++++..
T Consensus       101 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  180 (201)
T 3oes_A          101 LVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTK  180 (201)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            999999999999988888887653  24789999999999865433  34455677778889999999999999999999


Q ss_pred             HHHHHhcC
Q psy125          163 LARKLIGD  170 (385)
Q Consensus       163 i~~~l~~~  170 (385)
                      |++.+...
T Consensus       181 l~~~i~~~  188 (201)
T 3oes_A          181 VIQEIARV  188 (201)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhh
Confidence            99988654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.92  E-value=3.2e-24  Score=184.65  Aligned_cols=169  Identities=50%  Similarity=0.864  Sum_probs=141.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      ...+||+|+|++|||||||+|+|+++.+...+.++.+.+..........+ .+.+.+|||||++.+......++.++|++
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   88 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA   88 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence            45799999999999999999999888888888888888777776665544 48999999999999988899999999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      |+|+|++++.+++.+..|+..+.... .+.|+++|+||+|+.....  ......+....+.+++++||+++.|+++++..
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  168 (218)
T 4djt_A           89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLH  168 (218)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHH
Confidence            99999999999999888888877643 3589999999999876432  33344566677889999999999999999999


Q ss_pred             HHHHHhcCCCccc
Q psy125          163 LARKLIGDPNLEF  175 (385)
Q Consensus       163 i~~~l~~~~~~~~  175 (385)
                      |++.+........
T Consensus       169 l~~~~~~~~~~~~  181 (218)
T 4djt_A          169 LARIFTGRPDLIF  181 (218)
T ss_dssp             HHHHHHCCTTCCB
T ss_pred             HHHHHhccccccc
Confidence            9999988765544

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.92  E-value=3.1e-24  Score=176.37  Aligned_cols=159  Identities=18%  Similarity=0.255  Sum_probs=112.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+++|++|||||||+|++++. ......++.+.++. .....+...+.+.+|||+|++.+......++..+|++++
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   78 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI   78 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC-----------CEEE-EEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceE-EEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence            3589999999999999999996644 44455677777774 445678889999999999999988888999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      |||++++.+++.+..|+..+...  ..+.|+++|+||+|+.....  ......+....+.+++++||+++.|+++++.+|
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  158 (166)
T 3q72_A           79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  158 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence            99999999999988888887763  35789999999999865332  344456777778899999999999999999999


Q ss_pred             HHHHh
Q psy125          164 ARKLI  168 (385)
Q Consensus       164 ~~~l~  168 (385)
                      .+.+.
T Consensus       159 ~~~~~  163 (166)
T 3q72_A          159 VRQIR  163 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.92  E-value=2.7e-24  Score=182.61  Aligned_cols=162  Identities=31%  Similarity=0.603  Sum_probs=130.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+|+|++|||||||+|+|+++.+...+.++.+.+............+.+.+|||||.+.+...+..++.++|++|+
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  103 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL  103 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEE
Confidence            46999999999999999999999888877778888877777777778888999999999999888888999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |+|++++.+++.+..|+..+... ..+.|+++|+||+|+.....  ..+...++...+..++++||+++.|+++++.+|+
T Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~  183 (200)
T 2o52_A          104 VYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA  183 (200)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999988898887663 35789999999999865332  3455667777888999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       184 ~~i~~  188 (200)
T 2o52_A          184 RTILN  188 (200)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.92  E-value=3.9e-24  Score=184.84  Aligned_cols=163  Identities=29%  Similarity=0.536  Sum_probs=133.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+|+|++|||||||+++|+++.+...+.++.+.+............+.+.+|||||++.+...+..+++.+|++|+
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vil   91 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALI   91 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEE
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEE
Confidence            45899999999999999999999988887888888888877777778888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |||++++.+++.+..|+..+... ..+.|+++|+||+|+...+.  ..+...+....+.+++++||+++.|+++++.+|+
T Consensus        92 V~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  171 (223)
T 3cpj_B           92 VYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI  171 (223)
T ss_dssp             EEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999888898887764 34789999999999865332  3445567777788999999999999999999999


Q ss_pred             HHHhcC
Q psy125          165 RKLIGD  170 (385)
Q Consensus       165 ~~l~~~  170 (385)
                      +.+...
T Consensus       172 ~~i~~~  177 (223)
T 3cpj_B          172 NTIYQK  177 (223)
T ss_dssp             HHHTTC
T ss_pred             HHHHHH
Confidence            998664

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.92  E-value=6.7e-24  Score=180.88  Aligned_cols=163  Identities=27%  Similarity=0.509  Sum_probs=138.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      .++.++|+|+|++|||||||+|+|+++.+...+.++.+.+.. .....+...+.+.+|||||++.+...+..++.++|++
T Consensus        11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   89 (206)
T 2bov_A           11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   89 (206)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEE-EEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEE
Confidence            356799999999999999999999988887777777776553 3455677788999999999998888888999999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      ++|||++++.++..+..|+..+.....  +.|+++|+||+|+.....  ..+...+....+.+++++||+++.|+++++.
T Consensus        90 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  169 (206)
T 2bov_A           90 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF  169 (206)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999888889888877543  889999999999875432  3455666777788999999999999999999


Q ss_pred             HHHHHHhc
Q psy125          162 WLARKLIG  169 (385)
Q Consensus       162 ~i~~~l~~  169 (385)
                      +|++.+..
T Consensus       170 ~l~~~i~~  177 (206)
T 2bov_A          170 DLMREIRA  177 (206)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998743

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.92  E-value=4.7e-24  Score=176.88  Aligned_cols=161  Identities=22%  Similarity=0.316  Sum_probs=124.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc--cccchhhhhccCcE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK--FGGLRDGYYIQGQC   84 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~--~~~~~~~~~~~~d~   84 (385)
                      ++.+||+++|++|||||||+|+|+++.+.. ..++.|.+........+...+.+.+|||||+..  +......++..+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERD-LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcc-ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            467999999999999999999987766543 345677777777777888889999999999886  44556677889999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      +++|||++++.+++.+..|+..+...  ..+.|+++|+||+|+...+.  ..+...+....+.+++++||+++.|+++++
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            99999999999999888888877653  24789999999999975432  334445666677899999999999999999


Q ss_pred             HHHHHHHh
Q psy125          161 LWLARKLI  168 (385)
Q Consensus       161 ~~i~~~l~  168 (385)
                      .+|++.+.
T Consensus       161 ~~l~~~~~  168 (175)
T 2nzj_A          161 EGVVRQLR  168 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.92  E-value=2.9e-24  Score=179.92  Aligned_cols=163  Identities=23%  Similarity=0.401  Sum_probs=134.6

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      ..+.+||+++|++|||||||+++|+++.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            346799999999999999999999998887777888876654 3456677789999999999999888888999999999


Q ss_pred             EEEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcchh-------------h-hHHHHHHHHhcC-CeEEEEc
Q psy125           86 IIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK-------------V-KAKSIVFHRKKN-LQYYDIS  149 (385)
Q Consensus        86 llV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~-------------~-~~~~~~~~~~~~-~~~~~~S  149 (385)
                      ++|||++++.+++.+ ..|+..+.....+.|+++|+||+|+....             . ..+...++...+ .+++++|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  162 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  162 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence            999999999999887 57888777766789999999999986421             1 234455665555 6999999


Q ss_pred             CC-CCCChHHHHHHHHHHHhc
Q psy125          150 AK-SNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       150 a~-~~~gi~~l~~~i~~~l~~  169 (385)
                      |+ ++.|+++++..+++.+..
T Consensus       163 a~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          163 ALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTTBHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCcCHHHHHHHHHHHHhc
Confidence            98 689999999999988753

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=5.5e-24  Score=181.69  Aligned_cols=165  Identities=27%  Similarity=0.435  Sum_probs=130.6

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      |.+..+||+++|++|||||||+|+|+++.+...+.++.+.+.... ...+...+.+.+|||||++.+...+..++.++|+
T Consensus        21 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   99 (207)
T 2fv8_A           21 QSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (207)
T ss_dssp             GGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCE
T ss_pred             ccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCE
Confidence            345678999999999999999999999888777777777665443 5567778999999999999988888899999999


Q ss_pred             EEEEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEE
Q psy125           85 AIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDI  148 (385)
Q Consensus        85 illV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~  148 (385)
                      +++|||++++.+++.+ ..|+..+.....+.|+++|+||+|+.....              ..+...++...+. .++++
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (207)
T 2fv8_A          100 ILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC  179 (207)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence            9999999999998887 567777776667899999999999865421              2233445555565 89999


Q ss_pred             cCCCCCChHHHHHHHHHHHhcC
Q psy125          149 SAKSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~  170 (385)
                      ||+++.|+++++..|.+.+...
T Consensus       180 SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          180 SAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHSC
T ss_pred             eCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999987653

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.92  E-value=1.2e-23  Score=172.50  Aligned_cols=162  Identities=26%  Similarity=0.486  Sum_probs=134.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      |+.+||+++|++|||||||+|+++++.+...+.++.+... ..........+.+.+|||||...+...+..++..+|+++
T Consensus         1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   79 (166)
T 2ce2_X            1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence            3568999999999999999999998877776666666443 344556777889999999999988888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhcC--CCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~~--~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|+|+++..++..+..|+..+.....  +.|+++++||+|+..... ......+....+.+++++|++++.|+++++.+|
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999888888887776433  799999999999865332 344556667778899999999999999999999


Q ss_pred             HHHHhc
Q psy125          164 ARKLIG  169 (385)
Q Consensus       164 ~~~l~~  169 (385)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            987643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.92  E-value=3.2e-24  Score=182.76  Aligned_cols=162  Identities=23%  Similarity=0.393  Sum_probs=134.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ...+||+++|++|||||||+++|+++.+...+.++.+.++. .....+...+.+.+|||+|++.+...+..++.++|++|
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  104 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL  104 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE-EEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEE
Confidence            45799999999999999999999998888777888876663 34556777899999999999999888889999999999


Q ss_pred             EEEeCCChhhhhcH-HHHHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcC-CeEEEEcC
Q psy125           87 IMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKN-LQYYDISA  150 (385)
Q Consensus        87 lV~d~~~~~~~~~~-~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~Sa  150 (385)
                      +|||++++.++..+ ..|+..+.....+.|+++|+||+|+....              ...+...++...+ ..++++||
T Consensus       105 lv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  184 (205)
T 1gwn_A          105 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  184 (205)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeee
Confidence            99999999999887 67888887766789999999999986421              1233455665555 68999999


Q ss_pred             C-CCCChHHHHHHHHHHHhc
Q psy125          151 K-SNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       151 ~-~~~gi~~l~~~i~~~l~~  169 (385)
                      + ++.|++++|..|++.+..
T Consensus       185 k~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          185 LQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCcCHHHHHHHHHHHHhh
Confidence            8 689999999999987653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.92  E-value=6.9e-24  Score=176.52  Aligned_cols=156  Identities=19%  Similarity=0.353  Sum_probs=125.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ++.+||+++|++|||||||+++|+++.+.. +.++.+..+ ......+...+.+.+|||+|++.     ..+++++|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            578999999999999999999999888766 677777554 44556677889999999999875     46788999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcc---hhh-hHHHHHHHHhc-CCeEEEEcCCCCCChH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKD---RKV-KAKSIVFHRKK-NLQYYDISAKSNYNFE  157 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~---~~~-~~~~~~~~~~~-~~~~~~~Sa~~~~gi~  157 (385)
                      +|||++++.++..+..|+..+....    .+.|+++|+||+|+..   +.. ..+...++... +.+++++||+++.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            9999999999998888766555431    4789999999999842   111 33444555544 6799999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy125          158 KPFLWLARKLIG  169 (385)
Q Consensus       158 ~l~~~i~~~l~~  169 (385)
                      +++..|++.+..
T Consensus       158 ~lf~~l~~~~~~  169 (178)
T 2iwr_A          158 RVFQEVAQKVVT  169 (178)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.92  E-value=1.5e-23  Score=178.53  Aligned_cols=162  Identities=30%  Similarity=0.526  Sum_probs=135.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-----------------------------
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-----------------------------   57 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-----------------------------   57 (385)
                      .+.+||+|+|++|||||||+|+|+++.+...+.++.+.+............                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            357999999999999999999999998888888888877766666655544                             


Q ss_pred             --------EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125           58 --------IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK  129 (385)
Q Consensus        58 --------~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~  129 (385)
                              +.+.+|||||++.+......++.++|++|+|+|++++.++..+..|+..+.... ..|+++|+||+|+....
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D~~~~~  163 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIILVANKIDKNKFQ  163 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTTCC-CC
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCCccccc
Confidence                    899999999999998889999999999999999999999988888888877653 49999999999943222


Q ss_pred             h-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          130 V-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       130 ~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      . ..+...++...+.+++++||+++.|+++++.+|.+.+..
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            2 455666777788899999999999999999999987753

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.92  E-value=8.4e-24  Score=179.65  Aligned_cols=162  Identities=27%  Similarity=0.452  Sum_probs=127.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+++|+++.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++|+++
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE-EEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            56799999999999999999999988877777777765543 34556777889999999999999888889999999999


Q ss_pred             EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcCC-eEEEEcC
Q psy125           87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKNL-QYYDISA  150 (385)
Q Consensus        87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~Sa  150 (385)
                      +|||++++.++..+. .|+..+.....+.|+++|+||+|+....              ...+...++...+. +++++||
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  176 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA  176 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence            999999999998876 6888887766789999999999986521              12344556666566 8999999


Q ss_pred             CCCCChHHHHHHHHHHHhc
Q psy125          151 KSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~  169 (385)
                      +++.|+++++..|++.+..
T Consensus       177 ~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          177 LTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999988754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.92  E-value=5.3e-25  Score=186.35  Aligned_cols=162  Identities=19%  Similarity=0.179  Sum_probs=129.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------cccceeeeEEEEE-EeCCeeEEEEEEeCCCccccccc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY-----------VATLGVEVHPLVF-HTNRGAIRFNVWDTAGQEKFGGL   74 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~-----------~~~~g~t~~~~~~-~~~~~~~~~~i~Dt~g~~~~~~~   74 (385)
                      .+.+||+|+|++|||||||++. +.+.+...+           .++.+.++..... ..+...+.+.+|||||++.+...
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~   90 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS   90 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred             ccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence            4579999999999999999976 555555543           3355555444433 55667899999999999999999


Q ss_pred             hhhhhccCcEEEEEEeCCC------hhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEE
Q psy125           75 RDGYYIQGQCAIIMFDVTS------RITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYD  147 (385)
Q Consensus        75 ~~~~~~~~d~illV~d~~~------~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~  147 (385)
                      +..+++++|++|+|||+++      ..++..+..|+..+.....+.|+++|+||+|+.......+...++...+. ++++
T Consensus        91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~  170 (198)
T 3t1o_A           91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLE  170 (198)
T ss_dssp             HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEE
T ss_pred             HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEE
Confidence            9999999999999999994      45566666676665434468999999999999776556667777777788 9999


Q ss_pred             EcCCCCCChHHHHHHHHHHHhc
Q psy125          148 ISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      +||+++.|+++++.+|++.+..
T Consensus       171 ~Sa~~~~gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          171 AVATEGKGVFETLKEVSRLVLA  192 (198)
T ss_dssp             CBGGGTBTHHHHHHHHHHHHHH
T ss_pred             EecCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999998754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.92  E-value=5.3e-24  Score=182.78  Aligned_cols=163  Identities=28%  Similarity=0.520  Sum_probs=116.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+++|+++.+...+.++.+... ......+...+.+.+|||||++.+...+..++.++|+++
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            4679999999999999999999998877766667665444 334566778889999999999998888888999999999


Q ss_pred             EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEEcC
Q psy125           87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDISA  150 (385)
Q Consensus        87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~Sa  150 (385)
                      +|||++++.+++.+. .|+..+.....+.|+++|+||+|+.....              ..+...++...+. .++++||
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  190 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA  190 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence            999999999998876 68888877667899999999999865431              2234556666676 9999999


Q ss_pred             CCCCChHHHHHHHHHHHhcC
Q psy125          151 KSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~  170 (385)
                      +++.|+++++..|++.+...
T Consensus       191 ~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          191 RLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             TTTBSHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999987653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.92  E-value=1.3e-23  Score=176.74  Aligned_cols=165  Identities=25%  Similarity=0.472  Sum_probs=125.3

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCc
Q psy125            4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ   83 (385)
Q Consensus         4 ~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d   83 (385)
                      ...++.+||+++|.+|||||||+|+|+++.+...+.++.+.... .........+.+.+|||||.+.+...+..++..+|
T Consensus        16 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   94 (190)
T 3con_A           16 FQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGE   94 (190)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC-----------CTTCS
T ss_pred             ccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE-EEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCC
Confidence            34467899999999999999999999988777666666654443 34556777889999999999988888889999999


Q ss_pred             EEEEEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           84 CAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        84 ~illV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      ++++|+|+++..++..+..|+..+....  .+.|+++|+||+|+..... ..+...+....+.+++++||+++.|+++++
T Consensus        95 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  174 (190)
T 3con_A           95 GFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAF  174 (190)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999988888887776643  3789999999999865322 345556677777899999999999999999


Q ss_pred             HHHHHHHhc
Q psy125          161 LWLARKLIG  169 (385)
Q Consensus       161 ~~i~~~l~~  169 (385)
                      .+|.+.+..
T Consensus       175 ~~l~~~~~~  183 (190)
T 3con_A          175 YTLVREIRQ  183 (190)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=1.3e-23  Score=179.99  Aligned_cols=163  Identities=26%  Similarity=0.553  Sum_probs=138.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.++|+|+|++|||||||+++|+++.+...+.++.+.+............+.+.+|||||++.+...+..++..+|+++
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   97 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII   97 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence            34689999999999999999999988887778888888777777777878899999999999999888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+..... ......+....+.+++++||+++.|+++++.+|.
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  177 (213)
T 3cph_A           98 LVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLA  177 (213)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999988888888877643 3689999999999854322 3344556666678999999999999999999998


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       178 ~~~~~  182 (213)
T 3cph_A          178 KLIQE  182 (213)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.3e-23  Score=177.78  Aligned_cols=161  Identities=25%  Similarity=0.372  Sum_probs=134.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+++|+++.+...+.++.+... ......+...+.+.+|||||.+. ...+..++..+|+++
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ii  103 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFV  103 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEE
Confidence            5679999999999999999999999888877778777655 34456677889999999999987 667788889999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCC-ChHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNY-NFEKPFL  161 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~  161 (385)
                      +|||++++.+++.+..|+..+...  ..+.|+++|+||+|+...+.  ..+...+....+.+++++||+++. |+++++.
T Consensus       104 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~  183 (196)
T 2atv_A          104 LVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFY  183 (196)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHH
Confidence            999999999999988888877663  25889999999999876322  344556666778899999999999 9999999


Q ss_pred             HHHHHHhc
Q psy125          162 WLARKLIG  169 (385)
Q Consensus       162 ~i~~~l~~  169 (385)
                      +|++.+..
T Consensus       184 ~l~~~i~~  191 (196)
T 2atv_A          184 ELCREVRR  191 (196)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99988754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.92  E-value=2.1e-23  Score=175.17  Aligned_cols=161  Identities=25%  Similarity=0.478  Sum_probs=132.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+++|++|||||||+|+|+++.+...+.++.+. ........+...+.+.+|||||++.+...+..++.++|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            5689999999999999999999988877777666653 333455667788899999999999999999999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |||++++.++..+..|+..+....  .+.|+++|+||+|+..... ......+....+.+++++||+++.|+++++.+|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  161 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV  161 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999988888888877632  4789999999999875433 3445566777788999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       162 ~~~~~  166 (189)
T 4dsu_A          162 REIRK  166 (189)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98743

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.92  E-value=2.2e-24  Score=180.10  Aligned_cols=162  Identities=30%  Similarity=0.493  Sum_probs=120.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+++++.+.+...+.++.+...... ...+...+.+.+|||||++.+...+..++.++|+++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   84 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAN-VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFI   84 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCC-CC-------CEEECCCC-CTTTTTGGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEE-EEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEE
Confidence            4679999999999999999999998887777667666443321 233455678889999999999888999999999999


Q ss_pred             EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh------------hHHHHHHHHhcCC-eEEEEcCCC
Q psy125           87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKS  152 (385)
Q Consensus        87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~-~~~~~Sa~~  152 (385)
                      +|+|++++.+++.+. .|+..+.....+.|+++|+||+|+.....            ..+...+....+. +++++||++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  164 (182)
T 3bwd_D           85 LAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKS  164 (182)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCC
Confidence            999999999998876 68888777667899999999999865332            2344556666665 899999999


Q ss_pred             CCChHHHHHHHHHHHhc
Q psy125          153 NYNFEKPFLWLARKLIG  169 (385)
Q Consensus       153 ~~gi~~l~~~i~~~l~~  169 (385)
                      +.|+++++..|++.+.+
T Consensus       165 ~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          165 QENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             CTTHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            99999999999988743

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.92  E-value=7.3e-24  Score=179.63  Aligned_cols=159  Identities=21%  Similarity=0.378  Sum_probs=127.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      .+.+||+|+|++|||||||+++|+++.+.. .+.++.|.+....    +...+.+.+|||||++.+...+..++.++|++
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   90 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV   90 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence            567999999999999999999998888777 6788888655433    34678999999999999999999999999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhc---------CCCCEEEEEeCCCCcchhhhHHHH---HH---HHhcCCeEEEEcC
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVC---------ENIPIVLCGNKVDIKDRKVKAKSI---VF---HRKKNLQYYDISA  150 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~---------~~~~~ilv~nK~Dl~~~~~~~~~~---~~---~~~~~~~~~~~Sa  150 (385)
                      |+|||++++.++..+..|+..+....         .+.|+++|+||+|+.......+..   .+   .......++++||
T Consensus        91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  170 (199)
T 4bas_A           91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNG  170 (199)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBT
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeC
Confidence            99999999999988888887776531         288999999999997653222221   11   1335668999999


Q ss_pred             CCCCChHHHHHHHHHHHhc
Q psy125          151 KSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~  169 (385)
                      +++.|+++++..|++.+..
T Consensus       171 ~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          171 LKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             TTTBTHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHH
Confidence            9999999999999998754

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.7e-23  Score=178.45  Aligned_cols=162  Identities=20%  Similarity=0.281  Sum_probs=125.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCC-CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc-cccchhhhhccCcE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQC   84 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~-~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~-~~~~~~~~~~~~d~   84 (385)
                      .+.+||+|+|++|||||||+|+|++... .....++.|.+.......+++..+.+.+|||+|... +..+...+++.+++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~  114 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA  114 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence            4569999999999999999999886432 222234466665556667788889999999999875 34455667788999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      +|+|||+++..+|+.+..|...+...  ..+.|+++|+||+|+...+.  ..+...++...+.+++++||+++.|++++|
T Consensus       115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf  194 (211)
T 2g3y_A          115 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  194 (211)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            99999999999999988888777642  35789999999999965332  233444556667899999999999999999


Q ss_pred             HHHHHHHh
Q psy125          161 LWLARKLI  168 (385)
Q Consensus       161 ~~i~~~l~  168 (385)
                      ..|++.+.
T Consensus       195 ~~l~~~i~  202 (211)
T 2g3y_A          195 EGIVRQVR  202 (211)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999874

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.6e-23  Score=172.91  Aligned_cols=160  Identities=24%  Similarity=0.419  Sum_probs=131.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+++|++|||||||+|+++++.+...+.++.+.+... ....+...+.+.+|||||...+......++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE-EEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            46899999999999999999999888777777777755543 34567778899999999999888888889999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc---CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~---~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      |+|++++.+++.+..|+..+....   .+.|+++|+||+|+...+.  ......+....+.+++++||+++.|+++++.+
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            999999999988877877666532   4789999999999865432  23445566667789999999999999999999


Q ss_pred             HHHHHh
Q psy125          163 LARKLI  168 (385)
Q Consensus       163 i~~~l~  168 (385)
                      |.+.+.
T Consensus       161 l~~~~~  166 (172)
T 2erx_A          161 LLNLEK  166 (172)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            988653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.91  E-value=6.2e-24  Score=182.72  Aligned_cols=162  Identities=32%  Similarity=0.547  Sum_probs=134.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe----------eEEEEEEeCCCccccccchhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG----------AIRFNVWDTAGQEKFGGLRDG   77 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~----------~~~~~i~Dt~g~~~~~~~~~~   77 (385)
                      +.+||+|+|++|||||||+|+|+++.+...+.++.+.++..........          .+.+.+|||||++.+...+..
T Consensus        24 ~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~  103 (217)
T 2f7s_A           24 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA  103 (217)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             eeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHH
Confidence            4689999999999999999999988887777777777666555555544          789999999999988888889


Q ss_pred             hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCC
Q psy125           78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSN  153 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~  153 (385)
                      ++.++|++|+|||++++.+++.+..|+..+....  .+.|+++|+||+|+...+.  ..+...+....+.+++++||+++
T Consensus       104 ~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g  183 (217)
T 2f7s_A          104 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATG  183 (217)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTT
T ss_pred             HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCC
Confidence            9999999999999999999988888877665433  5789999999999865432  34556677777889999999999


Q ss_pred             CChHHHHHHHHHHHhc
Q psy125          154 YNFEKPFLWLARKLIG  169 (385)
Q Consensus       154 ~gi~~l~~~i~~~l~~  169 (385)
                      .|+++++.+|++.+..
T Consensus       184 ~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          184 QNVEKAVETLLDLIMK  199 (217)
T ss_dssp             BTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999988743

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.9e-23  Score=177.01  Aligned_cols=164  Identities=26%  Similarity=0.458  Sum_probs=134.9

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      ..+.++|+++|++|||||||+|+|+++.+...+.++.+.+... ....+...+.+.+|||||++.+...+..++.++|++
T Consensus         5 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   83 (199)
T 2gf0_A            5 QSNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQ-VISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAF   83 (199)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEE-EEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred             CCCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeE-EEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence            3467999999999999999999999988877777777755543 355677788999999999998888888899999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHh---cCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~---~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      ++|||++++.+++.+..|+..+...   ..+.|+++|+||+|+..... ......+....+.+++++||+++.|+++++.
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  163 (199)
T 2gf0_A           84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQ  163 (199)
T ss_dssp             EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHH
Confidence            9999999999998877777666553   24789999999999875433 3344556666778999999999999999999


Q ss_pred             HHHHHHhcC
Q psy125          162 WLARKLIGD  170 (385)
Q Consensus       162 ~i~~~l~~~  170 (385)
                      +|.+.+...
T Consensus       164 ~l~~~~~~~  172 (199)
T 2gf0_A          164 ELLTLETRR  172 (199)
T ss_dssp             HHHHHCSSS
T ss_pred             HHHHHHhhh
Confidence            999986543

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.91  E-value=2.3e-23  Score=174.70  Aligned_cols=159  Identities=17%  Similarity=0.269  Sum_probs=127.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+|+++++. ...+.++.+.+......    +.+.+.+|||||++.+...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLEH----RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEEE----TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            467999999999999999999988777 66777787755443332    4688999999999988888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|++++.+++.+..|+..+...  ..+.|+++|+||+|+.......+..+...     ..+.+++++||+++.|++++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  170 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence            999999999998888888777653  35799999999999976433333322221     23458999999999999999


Q ss_pred             HHHHHHHHhcC
Q psy125          160 FLWLARKLIGD  170 (385)
Q Consensus       160 ~~~i~~~l~~~  170 (385)
                      +..|.+.+...
T Consensus       171 ~~~l~~~i~~~  181 (186)
T 1ksh_A          171 IDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhc
Confidence            99999988654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.91  E-value=2e-23  Score=177.75  Aligned_cols=160  Identities=28%  Similarity=0.502  Sum_probs=129.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      ++.+||+++|++|||||||+++|+.+.+...+.++.+... ......+...+.+.+|||||++.+......++.++|+++
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            5679999999999999999999998888777777776443 334556677888999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEEcC
Q psy125           87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDISA  150 (385)
Q Consensus        87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~Sa  150 (385)
                      +|||++++.+++.+. .|+..+.....+.|+++|+||+|+.....              ..+...++...+. +++++||
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  186 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence            999999999998876 68888777667899999999999865332              2234445555554 6999999


Q ss_pred             CCCCChHHHHHHHHHHH
Q psy125          151 KSNYNFEKPFLWLARKL  167 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l  167 (385)
                      +++.|+++++..|.+.+
T Consensus       187 ~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          187 LTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTCTTHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999998754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=2.1e-23  Score=175.06  Aligned_cols=159  Identities=21%  Similarity=0.323  Sum_probs=123.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.++|+++|++|||||||+++++++.+. .+.++.|.+......    +++.+.+|||||++.+...+..++.++|+++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   88 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   88 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEEEE----TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999998877766 666777755443332    3588999999999998888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|++++.+++.+..|+..+...  ..+.|+++|+||+|+.......+......     ..+..++++||+++.|++++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  168 (187)
T 1zj6_A           89 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG  168 (187)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHH
Confidence            999999999998888888887653  36899999999999975332233332222     23458999999999999999


Q ss_pred             HHHHHHHHhcC
Q psy125          160 FLWLARKLIGD  170 (385)
Q Consensus       160 ~~~i~~~l~~~  170 (385)
                      +.+|++.+...
T Consensus       169 ~~~l~~~~~~~  179 (187)
T 1zj6_A          169 LEWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHHCC-
T ss_pred             HHHHHHHHHHH
Confidence            99999987554

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.91  E-value=2.8e-24  Score=183.47  Aligned_cols=163  Identities=25%  Similarity=0.389  Sum_probs=101.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC--CCCCcccccceeeeEEEEEEeCCe--eEEEEEEeCCCccccccchhhhhccC
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHTNRG--AIRFNVWDTAGQEKFGGLRDGYYIQG   82 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~--~~~~~~~~~~g~t~~~~~~~~~~~--~~~~~i~Dt~g~~~~~~~~~~~~~~~   82 (385)
                      .+.++|+|+|++|||||||+++|+++  .+...+.++.+.+...........  .+.+.+|||||++.+...+..++.++
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            35689999999999999999998887  666677777776666666666665  89999999999998888888899999


Q ss_pred             cEEEEEEeCCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcc-hhh--hHHHHHHHHhcCCeEEEEcCCC-CC
Q psy125           83 QCAIIMFDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKD-RKV--KAKSIVFHRKKNLQYYDISAKS-NY  154 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~-~~~--~~~~~~~~~~~~~~~~~~Sa~~-~~  154 (385)
                      |++|+|||++++.++..+..|+..+....    .+.|+++|+||+|+.. .+.  ..+...+....+.+++++||++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            99999999999999998889998887754    3889999999999976 322  3456667777788999999999 99


Q ss_pred             ChHHHHHHHHHHHhc
Q psy125          155 NFEKPFLWLARKLIG  169 (385)
Q Consensus       155 gi~~l~~~i~~~l~~  169 (385)
                      |+++++.+|++.+..
T Consensus       178 gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          178 DADAPFLSIATTFYR  192 (208)
T ss_dssp             --CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999987743

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.91  E-value=2.6e-23  Score=187.85  Aligned_cols=226  Identities=16%  Similarity=0.145  Sum_probs=169.8

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccccc----------c
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFG----------G   73 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~----------~   73 (385)
                      .+.+...|+++|++|||||||+|+|++..+ ....+.+++|+.........+ ...+.+|||||+....          .
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKV-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCc-cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence            445678999999999999999999776553 455677888887776666656 7899999999986544          3


Q ss_pred             chhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc-chhhhH-HHHHHHHhcC--CeEEEEc
Q psy125           74 LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK-DRKVKA-KSIVFHRKKN--LQYYDIS  149 (385)
Q Consensus        74 ~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~-~~~~~~-~~~~~~~~~~--~~~~~~S  149 (385)
                      ....++..+|++++|+|+++..++.....|+..+..  .+.|+++|+||+|+. ...... ....+....+  .+++++|
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~--~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS  162 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP--LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS  162 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG--GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh--cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence            445677899999999999998777665555666554  478999999999987 443333 3334444443  6899999


Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcC---------
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEM---------  220 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------  220 (385)
                      |+++.|+++++..|.+.+...        ++.+++....|...+..+.+.+++.....+.++.|+......         
T Consensus       163 A~~g~gv~~L~~~l~~~l~~~--------~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~~~~v~i~~~~~~~~~  234 (308)
T 3iev_A          163 ALKGANLDELVKTILKYLPEG--------EPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPTSIAVKINEIKPGDAN  234 (308)
T ss_dssp             TTTTBSHHHHHHHHHHHSCBC--------CCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEEEEEECSSC
T ss_pred             CCCCCCHHHHHHHHHHhCccC--------CCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCCeeEEEeEEEEEccCC
Confidence            999999999999999998654        346677788888899999999999999999999998755322         


Q ss_pred             -CCCeeEEEEECCCCCCHHHHH
Q psy125          221 -DMPSFKCVLVGDGGTGKTTFV  241 (385)
Q Consensus       221 -~~~~~~i~~~G~~~vgks~~~  241 (385)
                       ....+...++-...+-|..++
T Consensus       235 ~~~~~i~a~i~ve~~~~k~i~i  256 (308)
T 3iev_A          235 PNMLVIKGEIIVDRENLKPIII  256 (308)
T ss_dssp             TTSEEEEEEEEESSGGGHHHHH
T ss_pred             CCeEEEEEEEEEccCCcceEEE
Confidence             122344555555555554443

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.91  E-value=7.9e-23  Score=172.30  Aligned_cols=163  Identities=20%  Similarity=0.302  Sum_probs=124.1

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCC-CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc-cccchhhhhccCc
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQ   83 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~-~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~-~~~~~~~~~~~~d   83 (385)
                      ..+.+||+|+|++|||||||+|+|++... .....++.|.+........++..+.+.+|||+|... ...+...+++.+|
T Consensus         3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~   82 (192)
T 2cjw_A            3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD   82 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCC
Confidence            35679999999999999999999886322 222233456665556667788888999999999875 4456677888999


Q ss_pred             EEEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125           84 CAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        84 ~illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      ++++|||+++..+|+.+..|...+...  ..+.|+++|+||+|+...+.  ..+...++...+.+++++||+++.|++++
T Consensus        83 ~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~l  162 (192)
T 2cjw_A           83 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL  162 (192)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHH
Confidence            999999999999999888887776653  24789999999999865332  23334455666779999999999999999


Q ss_pred             HHHHHHHHh
Q psy125          160 FLWLARKLI  168 (385)
Q Consensus       160 ~~~i~~~l~  168 (385)
                      |..|++.+.
T Consensus       163 f~~l~~~~~  171 (192)
T 2cjw_A          163 FEGIVRQVR  171 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998874

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.91  E-value=1.8e-23  Score=175.71  Aligned_cols=158  Identities=24%  Similarity=0.435  Sum_probs=127.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+|+|++|||||||+|+|+++.+...+.++.+.+....    ....+.+.+|||||++.+...+..++.++|+++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   95 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIV   95 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCCEEE
Confidence            4579999999999999999999998888877788888765432    335788999999999988888889999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|++++.+++.+..|+..+...  ..+.|+++|+||+|+.......+......     .....++++||+++.|++++
T Consensus        96 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l  175 (188)
T 1zd9_A           96 YMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDIT  175 (188)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHH
Confidence            999999999998888888777652  36899999999999975422222222111     22347899999999999999


Q ss_pred             HHHHHHHHh
Q psy125          160 FLWLARKLI  168 (385)
Q Consensus       160 ~~~i~~~l~  168 (385)
                      +.+|++.+.
T Consensus       176 ~~~l~~~~~  184 (188)
T 1zd9_A          176 LQWLIQHSK  184 (188)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHHHHHH
Confidence            999988764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.91  E-value=1.8e-23  Score=177.18  Aligned_cols=157  Identities=18%  Similarity=0.257  Sum_probs=117.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      +..+.++|+++|++|||||||++++.++.+ ..+.++.+.+...  ...+  ++.+.+|||||++.++..+..+++++|+
T Consensus        21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~~~--~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   95 (198)
T 1f6b_A           21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEE--LTIA--GMTFTTFDLGGHIQARRVWKNYLPAING   95 (198)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEE--EEET--TEEEEEEEECC----CCGGGGGGGGCSE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhcCCC-CccCCCCCceeEE--EEEC--CEEEEEEECCCcHhhHHHHHHHHhcCCE
Confidence            446679999999999999999999776654 4566777766432  2233  3899999999999999888999999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh-----------------cCCeE
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----------------KNLQY  145 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~  145 (385)
                      +++|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.......+...+...                 ...++
T Consensus        96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           96 IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            99999999999999888888877652  357999999999999753333334444331                 23479


Q ss_pred             EEEcCCCCCChHHHHHHHHHH
Q psy125          146 YDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus       146 ~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      +++||+++.|+++++.+|++.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.91  E-value=1.2e-23  Score=175.57  Aligned_cols=155  Identities=21%  Similarity=0.338  Sum_probs=122.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+|+|+++.+ ..+.++.|.+......    +++.+.+|||||++.+...+..++.++|+++
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIVI----NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEEE----TTEEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEEE----CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5679999999999999999999888776 6667777765543332    3488999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|++++.+++.+..|+..+...  ..+.|+++|+||+|+.......+.....     ...+..++++||+++.|++++
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  173 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG  173 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence            999999999998888888777653  3689999999999996532222222222     122347999999999999999


Q ss_pred             HHHHHHH
Q psy125          160 FLWLARK  166 (385)
Q Consensus       160 ~~~i~~~  166 (385)
                      +.+|++.
T Consensus       174 ~~~l~~~  180 (181)
T 2h17_A          174 LEWMMSR  180 (181)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhh
Confidence            9988753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.90  E-value=3.4e-23  Score=174.28  Aligned_cols=157  Identities=17%  Similarity=0.260  Sum_probs=121.0

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      +..+.+||+++|++|||||||++++.++.+. .+.++.+.+...  ...+  ++.+.+|||||++.++..+..+++++|+
T Consensus        19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 1m2o_B           19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEE--LAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNG   93 (190)
T ss_dssp             -----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEE--EEET--TEEEEEEECCCSGGGTTSGGGGCTTCCE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeEE--EEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            3456789999999999999999998877654 566777765332  3333  4889999999999998888899999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh------------cCCeEEEEcC
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK------------KNLQYYDISA  150 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~Sa  150 (385)
                      +++|+|++++.+++.+..|+..+...  ..+.|+++|+||+|+.......+..+....            ...+++++||
T Consensus        94 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           94 IVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            99999999999999888888777652  367999999999999753323333333221            2347999999


Q ss_pred             CCCCChHHHHHHHHHH
Q psy125          151 KSNYNFEKPFLWLARK  166 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~  166 (385)
                      +++.|+++++.+|++.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.90  E-value=3.2e-23  Score=174.44  Aligned_cols=157  Identities=22%  Similarity=0.397  Sum_probs=124.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCC-CCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~-~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      .+.+||+++|++|||||||+|+|+++. +...+.++.+.....  ..  ..++.+.+|||||++.+...+..++.++|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEK--FK--SSSLSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEEE--EE--CSSCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEEE--EE--ECCEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            467999999999999999999988776 455666777644332  22  2358899999999999888889999999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhc----CCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCCh
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNF  156 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~----~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi  156 (385)
                      ++|+|++++.++..+..|+..+....    .+.|+++|+||+|+.......+......     ..+..++++||+++.|+
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  174 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL  174 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence            99999999999988888887776632    4789999999999975433333433332     12458999999999999


Q ss_pred             HHHHHHHHHHH
Q psy125          157 EKPFLWLARKL  167 (385)
Q Consensus       157 ~~l~~~i~~~l  167 (385)
                      ++++.+|.+.+
T Consensus       175 ~~l~~~l~~~i  185 (190)
T 2h57_A          175 QEGVDWLQDQI  185 (190)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.90  E-value=1.1e-22  Score=167.83  Aligned_cols=158  Identities=20%  Similarity=0.356  Sum_probs=124.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+|+|+++.+. .+.++.+.+......    ..+.+.+|||||++.+...+..++.++|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETVTY----KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEEEE----TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEEEE----CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            35699999999999999999998887764 455666654433322    3688999999999998888889999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|++++.++.....|+..+...  ..+.|+++|+||+|+.......+.....     ...+.+++++||+++.|++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  159 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence            999999999888887787776653  2588999999999997643222222211     223457999999999999999


Q ss_pred             HHHHHHHHhc
Q psy125          160 FLWLARKLIG  169 (385)
Q Consensus       160 ~~~i~~~l~~  169 (385)
                      +.+|++.+..
T Consensus       160 ~~~l~~~i~~  169 (171)
T 1upt_A          160 MEWLVETLKS  169 (171)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhh
Confidence            9999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.90  E-value=3.7e-23  Score=172.66  Aligned_cols=157  Identities=18%  Similarity=0.303  Sum_probs=122.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.++|+++|++|||||||+++++++ ....+.++.|.+.....  .  ..+.+.+|||||++.+...+..++.++|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~~~~--~--~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSVQ--S--QGFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEEEE--E--TTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            56799999999999999999997665 44556777775543332  2  3688999999999988888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.......+......     ....+++++||+++.|++++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  168 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDG  168 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHH
Confidence            999999999998887887776542  35789999999999975433222222211     12347899999999999999


Q ss_pred             HHHHHHHHh
Q psy125          160 FLWLARKLI  168 (385)
Q Consensus       160 ~~~i~~~l~  168 (385)
                      +.+|++.+.
T Consensus       169 ~~~l~~~~~  177 (181)
T 1fzq_A          169 MNWVCKNVN  177 (181)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHHH
Confidence            999988753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.90  E-value=6.9e-23  Score=172.72  Aligned_cols=159  Identities=20%  Similarity=0.311  Sum_probs=118.4

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      +..+.+||+++|++|||||||+++++.+.+. ...++.+....    ......+.+.+|||||++.+...+..++.++|+
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   99 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE----TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQG   99 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEEE----EEEETTEEEEEEECC-----CTTHHHHHHTCCE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeEE----EEEECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            4567899999999999999999998776654 34455553322    223356899999999999988888899999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~  157 (385)
                      +++|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.......+......     ....+++++||+++.|++
T Consensus       100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          100 LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            99999999999998888888777652  25789999999999965432222222111     123478999999999999


Q ss_pred             HHHHHHHHHHh
Q psy125          158 KPFLWLARKLI  168 (385)
Q Consensus       158 ~l~~~i~~~l~  168 (385)
                      +++.+|++.+.
T Consensus       180 ~l~~~l~~~i~  190 (192)
T 2b6h_A          180 DGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.90  E-value=5e-23  Score=168.80  Aligned_cols=154  Identities=23%  Similarity=0.326  Sum_probs=119.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+++|++|||||||+++++++.+.. +.++.+....    ......+.+.+|||||++.+...+..++.++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEE----EEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEE----EEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999988877653 4566663322    23345688999999999988888888999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHH-----hcCCeEEEEcCCCCCChHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHR-----KKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      |++++.++..+..|+..+..  ...+.|+++|+||+|+.......+......     ..+.+++++||+++.|+++++.+
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence            99999999888888877665  235789999999999965422222221111     12347899999999999999999


Q ss_pred             HHHHHh
Q psy125          163 LARKLI  168 (385)
Q Consensus       163 i~~~l~  168 (385)
                      |++.+.
T Consensus       156 l~~~i~  161 (164)
T 1r8s_A          156 LSNQLR  161 (164)
T ss_dssp             HHHHC-
T ss_pred             HHHHHh
Confidence            998764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.90  E-value=1.1e-24  Score=184.99  Aligned_cols=162  Identities=30%  Similarity=0.599  Sum_probs=130.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+|+|++|||||||+|+|+++.+...+.++.+.+........+...+.+.+|||||++.+...+..++.++|++++
T Consensus        32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (199)
T 3l0i_B           32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV  111 (199)
T ss_dssp             EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEE
Confidence            46999999999999999999988888877778888888888888888888999999999999998889999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |||++++.+++.+..|+..+.... .+.|+++|+||+|+...+.  ......+....+.+++++||+++.|+++++.+|+
T Consensus       112 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~  191 (199)
T 3l0i_B          112 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  191 (199)
T ss_dssp             CC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999998888988876533 3789999999999865432  2234456677788999999999999999999998


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       192 ~~l~~  196 (199)
T 3l0i_B          192 AEIKK  196 (199)
T ss_dssp             TTTTT
T ss_pred             HHHHH
Confidence            77643

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.89  E-value=1e-21  Score=166.51  Aligned_cols=164  Identities=31%  Similarity=0.570  Sum_probs=135.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      ....++|+|+|++|||||||+++|++..+...+.++.|.+.....+..++..+.+.+||++|++.++.....++..++++
T Consensus         2 ~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~   81 (199)
T 2f9l_A            2 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA   81 (199)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence            34568999999999999999999999888777778888777777777888889999999999998888888888999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      ++|+|+.+..++..+..|+..+.... .+.|+++++||+|+.....  ......+.......++++|++++.|+++++..
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~  161 (199)
T 2f9l_A           82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN  161 (199)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999888878887665532 4688999999999865332  33455677777889999999999999999999


Q ss_pred             HHHHHhc
Q psy125          163 LARKLIG  169 (385)
Q Consensus       163 i~~~l~~  169 (385)
                      |.+.+..
T Consensus       162 l~~~~~~  168 (199)
T 2f9l_A          162 ILTEIYR  168 (199)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887743

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.89  E-value=3.8e-23  Score=173.05  Aligned_cols=161  Identities=20%  Similarity=0.376  Sum_probs=117.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcC--CCCCcccccceeeeEEEEEEe---CCeeEEEEEEeCCCccccccchhhhhccCc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHT---NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ   83 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~--~~~~~~~~~~g~t~~~~~~~~---~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d   83 (385)
                      .+||+|+|++|||||||+++|++.  .+...+.++.|.+........   +...+.+.+|||+|++.+..+...++.+++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            579999999999999999998874  344556677776655443332   235678999999999988888888899999


Q ss_pred             EEEEEEeCCCh-hhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH-----HHHHHHHhcCCe----EEEEcCCCC
Q psy125           84 CAIIMFDVTSR-ITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA-----KSIVFHRKKNLQ----YYDISAKSN  153 (385)
Q Consensus        84 ~illV~d~~~~-~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~-----~~~~~~~~~~~~----~~~~Sa~~~  153 (385)
                      ++++|||++++ .++..+..|+..+.....+.|+++|+||+|+.......     ....+....+.+    ++++||+++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE  161 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence            99999999997 47888888998887665689999999999987644321     122333334454    899999999


Q ss_pred             C-ChHHHHHHHHHHHhc
Q psy125          154 Y-NFEKPFLWLARKLIG  169 (385)
Q Consensus       154 ~-gi~~l~~~i~~~l~~  169 (385)
                      . ++++++..|.+.+..
T Consensus       162 ~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          162 SDALAKLRKTIINESLN  178 (184)
T ss_dssp             CHHHHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHHHhc
Confidence            7 999999999887754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=9e-23  Score=170.46  Aligned_cols=157  Identities=20%  Similarity=0.296  Sum_probs=120.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.++|+++|++|||||||+++++++.+ ..+.++.|........    ..+.+.+|||||.+.+...+..++.++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETLSY----KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEEEE----TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEEEE----CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5689999999999999999999776665 5666777755433322    3588999999999988888889999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh-----cCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----KNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|++++.+++.+..|+..+...  ..+.|+++|+||+|+.......+.......     ...+++++||+++.|++++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG  170 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence            999999999998888888777653  367899999999998654322333222211     2337899999999999999


Q ss_pred             HHHHHHHHh
Q psy125          160 FLWLARKLI  168 (385)
Q Consensus       160 ~~~i~~~l~  168 (385)
                      +.+|.+.+.
T Consensus       171 ~~~l~~~~~  179 (183)
T 1moz_A          171 LDWLIDVIK  179 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998874

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.89  E-value=2.1e-22  Score=170.34  Aligned_cols=160  Identities=16%  Similarity=0.145  Sum_probs=116.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccccccch---hhhhcc
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLR---DGYYIQ   81 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~---~~~~~~   81 (385)
                      ..+.+||+++|++|||||||++++.+ .+........+.+......... ...+.+.+|||+|++.+....   ..++++
T Consensus        17 ~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   95 (196)
T 3llu_A           17 QGSKPRILLMGLRRSGKSSIQKVVFH-KMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG   95 (196)
T ss_dssp             ---CCEEEEEESTTSSHHHHHHHHHS-CCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHHh-cCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc
Confidence            35679999999999999999998554 4444432222223233333332 567899999999999887766   789999


Q ss_pred             CcEEEEEEeCCCh--hhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---------hHHHHHHHH----hcCCeEE
Q psy125           82 GQCAIIMFDVTSR--ITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---------KAKSIVFHR----KKNLQYY  146 (385)
Q Consensus        82 ~d~illV~d~~~~--~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---------~~~~~~~~~----~~~~~~~  146 (385)
                      +|++|+|||+++.  .++..+..|+..+.....+.|+++|+||+|+.....         ......+..    ..+..++
T Consensus        96 ~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~  175 (196)
T 3llu_A           96 TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFY  175 (196)
T ss_dssp             CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred             CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceE
Confidence            9999999999997  555666667776655567899999999999765221         112334444    4566899


Q ss_pred             EEcCCCCCChHHHHHHHHHHH
Q psy125          147 DISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       147 ~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                      ++||++ .|++++|..|++.+
T Consensus       176 e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          176 LTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EECTTS-THHHHHHHHHHHHT
T ss_pred             EEEech-hhHHHHHHHHHHHh
Confidence            999999 99999999998865

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.89  E-value=1.9e-22  Score=181.23  Aligned_cols=199  Identities=18%  Similarity=0.105  Sum_probs=142.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc--------ccchhhh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF--------GGLRDGY   78 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~--------~~~~~~~   78 (385)
                      .+..+|+|+|++|||||||+|+|++.... ..++.+++|+.........+...+.+|||||....        ......+
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~-ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA-PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCcee-eecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            56789999999999999999998876543 34455666766555444556789999999998753        2344567


Q ss_pred             hccCcEEEEEEeCCChhhhhcHHHHH-HHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCCh
Q psy125           79 YIQGQCAIIMFDVTSRITYKNVPNWH-RDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNF  156 (385)
Q Consensus        79 ~~~~d~illV~d~~~~~~~~~~~~~~-~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (385)
                      +..+|++++|+|++++.+..  ..|+ ..+.....+.|+++|+||+|+..... ..+....+ ....+++++||+++.|+
T Consensus        84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv  160 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSALDERQV  160 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCTTCHHHH
T ss_pred             HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeCCCCCCH
Confidence            88999999999998864433  3444 33433334789999999999875433 21111111 23347899999999999


Q ss_pred             HHHHHHHHHHHhcCCCcccccCCCCCCCCCC-CChhhhhhhHHhHHHHHHhcCCCCchhhhh
Q psy125          157 EKPFLWLARKLIGDPNLEFVAMPALLPPEVT-MDPQWQSRIEQDLKEAQETALPDDDEDLMA  217 (385)
Q Consensus       157 ~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~-~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~  217 (385)
                      ++++..|.+.+...+        +.+++... .|...+....+.+++...+.+.++.|+...
T Consensus       161 ~~l~~~l~~~l~~~~--------~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~  214 (301)
T 1wf3_A          161 AELKADLLALMPEGP--------FFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVA  214 (301)
T ss_dssp             HHHHHHHHTTCCBCC--------CSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCE
T ss_pred             HHHHHHHHHhcccCC--------CCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEE
Confidence            999999988775543        23444444 566666678888899999999988887654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.88  E-value=2.5e-22  Score=168.75  Aligned_cols=158  Identities=22%  Similarity=0.312  Sum_probs=122.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+|+++.+.+. .+.++.+.+......    ..+.+.+|||||++.+...+..+++++|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~~~~----~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLETLQY----KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEEEEE----TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEEEEE----CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            46899999999999999999997766554 355666644333222    3688999999999998888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.......+.....     ...+.+++++||+++.|++++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  174 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG  174 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence            999999999888887777776553  2578999999999997543222222211     122347999999999999999


Q ss_pred             HHHHHHHHhc
Q psy125          160 FLWLARKLIG  169 (385)
Q Consensus       160 ~~~i~~~l~~  169 (385)
                      +.+|.+.+..
T Consensus       175 ~~~l~~~i~~  184 (189)
T 2x77_A          175 MDWLVERLRE  184 (189)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.88  E-value=4.9e-21  Score=161.14  Aligned_cols=160  Identities=31%  Similarity=0.577  Sum_probs=135.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..++|+|+|++|||||||+++|++..+...+.++.+.+.....+..++..+.+.+||++|.+.+...+..++..++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            35899999999999999999999988888888888888877778888888899999999999888888888899999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |+|+.+..+++++..|+..+... ..+.|+++++||+|+.....  ......++......++++|++++.|+++++..|.
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999998888887787766543 24678999999999865322  3445567777788999999999999999999998


Q ss_pred             HHH
Q psy125          165 RKL  167 (385)
Q Consensus       165 ~~l  167 (385)
                      +.+
T Consensus       188 ~~i  190 (191)
T 1oix_A          188 TEI  190 (191)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            765

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.87  E-value=3.5e-21  Score=176.43  Aligned_cols=162  Identities=27%  Similarity=0.494  Sum_probs=134.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..++|+++|.+|||||||+++++.+.+...+.++.+.... .....+...+.+.+|||||++.+......++.++|++++
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE-EEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE-EEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            4589999999999999999999988887777777775553 345667778899999999999998888999999999999


Q ss_pred             EEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcCC-eEEEEcCC
Q psy125           88 MFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKNL-QYYDISAK  151 (385)
Q Consensus        88 V~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~~-~~~~~Sa~  151 (385)
                      |||++++.++..+. .|+..+.....+.|+++|+||+|+....              ...+...++...+. +++++||+
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  312 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  312 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence            99999999998876 6777777666689999999999985421              12344556666666 89999999


Q ss_pred             CCCChHHHHHHHHHHHhcC
Q psy125          152 SNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~~~  170 (385)
                      ++.|+++++..|.+.+...
T Consensus       313 ~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          313 TQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             TCTTHHHHHHHHHHHHHC-
T ss_pred             CCcCHHHHHHHHHHHHhcC
Confidence            9999999999999987653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.87  E-value=6.6e-22  Score=167.80  Aligned_cols=118  Identities=37%  Similarity=0.629  Sum_probs=110.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.+|++.++....+.+++..+.+.||||||+++|..++..+++++|++|+
T Consensus        25 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  104 (201)
T 2ew1_A           25 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL  104 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999988899999999988888889888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|++                                                |++|||++|.||+++|.+|+
T Consensus       105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  184 (201)
T 2ew1_A          105 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA  184 (201)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999876                                                89999999999999999999


Q ss_pred             HHHhcC
Q psy125          335 RKLIGD  340 (385)
Q Consensus       335 ~~i~~~  340 (385)
                      +.+...
T Consensus       185 ~~i~~~  190 (201)
T 2ew1_A          185 CRLISE  190 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.87  E-value=1.7e-21  Score=159.99  Aligned_cols=154  Identities=17%  Similarity=0.158  Sum_probs=109.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------chhhhhc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYYI   80 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------~~~~~~~   80 (385)
                      |+.++|+++|++|||||||+|+|++..+....  .++.+++.........+..+.+|||||+..+..      +...++.
T Consensus         1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   78 (165)
T 2wji_A            1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII   78 (165)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence            35689999999999999999998876654333  334444333322222347899999999887642      2344554


Q ss_pred             --cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125           81 --QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        81 --~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (385)
                        +++++++|+|+++...   ...|+..+..  .+.|+++|+||+|+..... ..+...+....+.+++++||+++.|++
T Consensus        79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           79 NEKPDLVVNIVDATALER---NLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             HHCCSEEEEEEETTCHHH---HHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             cCCCCEEEEEecCCchhH---hHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence              8999999999988543   2346666554  4789999999999864322 112344566667899999999999999


Q ss_pred             HHHHHHHHHH
Q psy125          158 KPFLWLARKL  167 (385)
Q Consensus       158 ~l~~~i~~~l  167 (385)
                      +++..|++.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.87  E-value=1.8e-21  Score=164.27  Aligned_cols=120  Identities=27%  Similarity=0.464  Sum_probs=110.0

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.+|.+.++.. .+..++..+.+.||||||+++|..++..+++++|++|
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   99 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVL   99 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEE
Confidence            356999999999999999999999999988999999877654 5677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh---------------------------------------------------hheeccccCCCchHHH
Q psy125          302 IMFDVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       302 lv~d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      +|||++++.||++                                                   |++|||++|.||+++|
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  179 (194)
T 3reg_A          100 LCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF  179 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHH
Confidence            9999999999877                                                   7899999999999999


Q ss_pred             HHHHHHHhcCCC
Q psy125          331 LWLARKLIGDPN  342 (385)
Q Consensus       331 ~~l~~~i~~~~~  342 (385)
                      .+|++.+..++.
T Consensus       180 ~~l~~~i~~~~~  191 (194)
T 3reg_A          180 EKSVDCIFSNKP  191 (194)
T ss_dssp             HHHHHHHHCSCC
T ss_pred             HHHHHHHHhcCC
Confidence            999999987654

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.87  E-value=7.5e-22  Score=169.29  Aligned_cols=120  Identities=23%  Similarity=0.370  Sum_probs=105.7

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.|...+.+|++.++ ...+.+++..+.+.||||+|+++|..++..+++++|++|
T Consensus        25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  103 (214)
T 3q3j_B           25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL  103 (214)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEE
Confidence            3579999999999999999999999999999999998776 456677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------------------hheecc
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------------------YYDISA  320 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------------------~~e~Sa  320 (385)
                      +|||++++.||++                                                             |+||||
T Consensus       104 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  183 (214)
T 3q3j_B          104 LCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA  183 (214)
T ss_dssp             EEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEecc
Confidence            9999999999876                                                             789999


Q ss_pred             ccCCC-chHHHHHHHHHHhcCCC
Q psy125          321 KSNYN-FEKPFLWLARKLIGDPN  342 (385)
Q Consensus       321 k~~~~-v~~~f~~l~~~i~~~~~  342 (385)
                      ++|.| |+++|.+|++.+.....
T Consensus       184 ~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          184 FTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             TTCHHHHHHHHHHHHHHHHC---
T ss_pred             CCCcccHHHHHHHHHHHHhccCc
Confidence            99998 99999999999986644

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.87  E-value=1.5e-21  Score=160.95  Aligned_cols=117  Identities=36%  Similarity=0.601  Sum_probs=102.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~   84 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   84 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999999888889999988888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|++                                                |++|||++|.||+++|.+|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  164 (170)
T 1z08_A           85 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            999999999876                                                89999999999999999999


Q ss_pred             HHHhc
Q psy125          335 RKLIG  339 (385)
Q Consensus       335 ~~i~~  339 (385)
                      +.+.+
T Consensus       165 ~~~~~  169 (170)
T 1z08_A          165 KRMIE  169 (170)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98865

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.87  E-value=1.2e-21  Score=163.30  Aligned_cols=119  Identities=22%  Similarity=0.303  Sum_probs=109.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+.++ ...+..++..+.+.+|||||+++|..++..+++++|++|+
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~   83 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   83 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEE
Confidence            468999999999999999999998999999999998877 6677788888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.+|+.                                                 |++|||++|.||+++|.+|
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  163 (181)
T 3t5g_A           84 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  163 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHH
Confidence            999999999987                                                 8999999999999999999


Q ss_pred             HHHHhcCCC
Q psy125          334 ARKLIGDPN  342 (385)
Q Consensus       334 ~~~i~~~~~  342 (385)
                      ++.+.....
T Consensus       164 ~~~~~~~~~  172 (181)
T 3t5g_A          164 ILEAEKMDG  172 (181)
T ss_dssp             HHHHHTC--
T ss_pred             HHHHHHhcC
Confidence            999987654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.78  E-value=8.2e-24  Score=180.20  Aligned_cols=160  Identities=29%  Similarity=0.510  Sum_probs=126.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+++|+.+.+...+.++.+.... .....+...+.+.+|||||++.+...+..++.++|+++
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS-ANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            35799999999999999999998887776666666654442 23344556788889999999998888888999999999


Q ss_pred             EEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcCC-eEEEEcC
Q psy125           87 IMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKNL-QYYDISA  150 (385)
Q Consensus        87 lV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~~-~~~~~Sa  150 (385)
                      +|+|++++.+++.+. .|+..+.....+.|+++|+||+|+.....              ..+...++...+. +++++||
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA  186 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
Confidence            999999999988876 67777665545889999999999865321              1223344455555 8899999


Q ss_pred             CCCCChHHHHHHHHHHH
Q psy125          151 KSNYNFEKPFLWLARKL  167 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l  167 (385)
                      +++.|+++++..|++.+
T Consensus       187 ~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          187 LTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999988764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.87  E-value=9.6e-22  Score=163.37  Aligned_cols=120  Identities=26%  Similarity=0.419  Sum_probs=109.7

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC-eeEEEEEeeCCCccccCcccccccccCcEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQCA  300 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~  300 (385)
                      ...+||+++|.+|||||+|++++..+.+...+.+|+|.++....+.+++ ..+.+.+|||||++++..++..+++++|++
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   83 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV   83 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence            3569999999999999999999999888888889998888888888776 578899999999999999999999999999


Q ss_pred             EEEEeCCChhhhhh---------------------------------------------------hheeccccCCCchHH
Q psy125          301 IIMFDVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       301 ilv~d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      |+|||++++.+|++                                                   |++|||++|.||+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  163 (178)
T 2hxs_A           84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC  163 (178)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence            99999999999876                                                   799999999999999


Q ss_pred             HHHHHHHHhcCC
Q psy125          330 FLWLARKLIGDP  341 (385)
Q Consensus       330 f~~l~~~i~~~~  341 (385)
                      |.+|++.+.+.+
T Consensus       164 ~~~l~~~~~~~~  175 (178)
T 2hxs_A          164 FQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHHhhh
Confidence            999999987654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.87  E-value=8.1e-22  Score=162.37  Aligned_cols=117  Identities=32%  Similarity=0.603  Sum_probs=109.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   84 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEE
Confidence            46899999999999999999999999988899999999988888888889999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|++                                                |++|||++|.||+++|.+|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~  164 (170)
T 1r2q_A           85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999877                                                79999999999999999999


Q ss_pred             HHHhc
Q psy125          335 RKLIG  339 (385)
Q Consensus       335 ~~i~~  339 (385)
                      +.+.+
T Consensus       165 ~~~~~  169 (170)
T 1r2q_A          165 KKLPK  169 (170)
T ss_dssp             HTSCC
T ss_pred             HHHhh
Confidence            87743

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.86  E-value=9.8e-22  Score=165.47  Aligned_cols=119  Identities=29%  Similarity=0.565  Sum_probs=106.5

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   98 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL   98 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence            35799999999999999999999999998888899988888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      +|||++++.+|++                                                |++|||++|.||+++|.+|
T Consensus        99 ~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  178 (191)
T 2a5j_A           99 LVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINT  178 (191)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999887                                                7999999999999999999


Q ss_pred             HHHHhcC
Q psy125          334 ARKLIGD  340 (385)
Q Consensus       334 ~~~i~~~  340 (385)
                      ++.+.+.
T Consensus       179 ~~~i~~~  185 (191)
T 2a5j_A          179 AKEIYRK  185 (191)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.86  E-value=3e-22  Score=167.35  Aligned_cols=118  Identities=31%  Similarity=0.627  Sum_probs=83.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|++++..+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   86 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence            46899999999999999999999888888888999988888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.||++                                                |++|||++|.||+++|.+|+
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  166 (183)
T 2fu5_C           87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  166 (183)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999876                                                89999999999999999999


Q ss_pred             HHHhcC
Q psy125          335 RKLIGD  340 (385)
Q Consensus       335 ~~i~~~  340 (385)
                      +.+..+
T Consensus       167 ~~i~~~  172 (183)
T 2fu5_C          167 RDIKAK  172 (183)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.86  E-value=2e-21  Score=177.05  Aligned_cols=158  Identities=22%  Similarity=0.304  Sum_probs=118.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+|+|++|||||||+++|+++.+... .++.+...    .......+.+.+|||||++.+...+..++.++|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~----~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE----EEEEETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE----EEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            4568999999999999999999877665433 34444333    333446689999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh-----cCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----KNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|||++++.++..+..++..+...  ..+.|+++|+||+|+.......+.......     .+.+++++||+++.|++++
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el  317 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG  317 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence            999999999998887777666552  258899999999999764433333322222     2347999999999999999


Q ss_pred             HHHHHHHHhc
Q psy125          160 FLWLARKLIG  169 (385)
Q Consensus       160 ~~~i~~~l~~  169 (385)
                      +..|++.+..
T Consensus       318 ~~~l~~~l~~  327 (329)
T 3o47_A          318 LDWLSNQLRN  327 (329)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHh
Confidence            9999998754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.86  E-value=7.1e-22  Score=167.75  Aligned_cols=120  Identities=36%  Similarity=0.582  Sum_probs=102.1

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.+|++.++....+.+++..+.+.||||||+++|..++..+++++|++|
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAI  106 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEE
Confidence            34689999999999999999999999998888999988888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHH
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      +|||++++.+|++                                                 |++|||++|.||+++|.+
T Consensus       107 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  186 (201)
T 2hup_A          107 LAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLR  186 (201)
T ss_dssp             EEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999876                                                 699999999999999999


Q ss_pred             HHHHHhcCC
Q psy125          333 LARKLIGDP  341 (385)
Q Consensus       333 l~~~i~~~~  341 (385)
                      |++.+..+.
T Consensus       187 l~~~i~~~~  195 (201)
T 2hup_A          187 VATELIMRH  195 (201)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999997654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.86  E-value=1.1e-21  Score=161.49  Aligned_cols=116  Identities=32%  Similarity=0.602  Sum_probs=108.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+++++.+.+...+.+++|.++....+.+++..+.+.+|||||++++..++..+++++|++|+|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEE
Confidence            58999999999999999999999999888999999999888888888889999999999999999999999999999999


Q ss_pred             EeCCChhhhhh---------------------------------------------------hheeccccCCCchHHHHH
Q psy125          304 FDVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       304 ~d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      ||++++.+|++                                                   |++|||++|.||+++|.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (170)
T 1ek0_A           83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999876                                                   899999999999999999


Q ss_pred             HHHHHhc
Q psy125          333 LARKLIG  339 (385)
Q Consensus       333 l~~~i~~  339 (385)
                      |++.+.+
T Consensus       163 l~~~i~~  169 (170)
T 1ek0_A          163 IGEKIPL  169 (170)
T ss_dssp             HHTTSCC
T ss_pred             HHHHHhh
Confidence            9987643

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.86  E-value=2e-21  Score=160.02  Aligned_cols=117  Identities=29%  Similarity=0.544  Sum_probs=109.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+...+..+.+.+|||||++++..++..+++++|++|+
T Consensus         5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   84 (170)
T 1z0j_A            5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   84 (170)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEE
Confidence            45899999999999999999999999988999999999988888889888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|++                                                |++|||++|.||+++|.+|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~  164 (170)
T 1z0j_A           85 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999877                                                89999999999999999999


Q ss_pred             HHHhc
Q psy125          335 RKLIG  339 (385)
Q Consensus       335 ~~i~~  339 (385)
                      +.+.+
T Consensus       165 ~~i~~  169 (170)
T 1z0j_A          165 RRIPS  169 (170)
T ss_dssp             HHCCC
T ss_pred             HHHhc
Confidence            98753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.86  E-value=4e-21  Score=159.58  Aligned_cols=161  Identities=15%  Similarity=0.161  Sum_probs=116.2

Q ss_pred             CCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccC
Q psy125            3 AEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQG   82 (385)
Q Consensus         3 ~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~   82 (385)
                      +.+..+.++|+++|++|||||||+++|+++.+.....++.+.+.........  +..+.+|||||++.+...+..++..+
T Consensus         2 ~~~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (178)
T 2lkc_A            2 SHMVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN--DKKITFLDTPGHEAFTTMRARGAQVT   79 (178)
T ss_dssp             CTTCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET--TEEEEESCCCSSSSSSCSCCSSCCCC
T ss_pred             CCcCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC--CceEEEEECCCCHHHHHHHHHHHhhC
Confidence            4566778999999999999999999998887766555554444433334433  35678999999999888888889999


Q ss_pred             cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhc-------C--CeEEEEcCCCC
Q psy125           83 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK-------N--LQYYDISAKSN  153 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~  153 (385)
                      |++++|+|+++....... .++..+.  ..+.|+++|+||+|+..... .+........       +  .+++++||+++
T Consensus        80 d~~i~v~d~~~~~~~~~~-~~l~~~~--~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  155 (178)
T 2lkc_A           80 DIVILVVAADDGVMPQTV-EAINHAK--AANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTK  155 (178)
T ss_dssp             CEEEEEEETTCCCCHHHH-HHHHHHG--GGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSS
T ss_pred             CEEEEEEECCCCCcHHHH-HHHHHHH--hCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCC
Confidence            999999999885332221 2222222  24789999999999875321 1112122111       1  47999999999


Q ss_pred             CChHHHHHHHHHHHhc
Q psy125          154 YNFEKPFLWLARKLIG  169 (385)
Q Consensus       154 ~gi~~l~~~i~~~l~~  169 (385)
                      .|+++++.+|++.+..
T Consensus       156 ~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          156 EGLDHLLEMILLVSEM  171 (178)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhhh
Confidence            9999999999987654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.86  E-value=2.3e-21  Score=163.74  Aligned_cols=119  Identities=30%  Similarity=0.611  Sum_probs=112.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+.++....+..++..+.+.||||||++++..++..+++++|++|+
T Consensus        15 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   94 (196)
T 3tkl_A           15 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV   94 (196)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEE
Confidence            46899999999999999999999999999999999999998999999888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|+.                                                |++|||++|.||+++|.+|+
T Consensus        95 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  174 (196)
T 3tkl_A           95 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  174 (196)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHH
Confidence            999999999877                                                89999999999999999999


Q ss_pred             HHHhcCC
Q psy125          335 RKLIGDP  341 (385)
Q Consensus       335 ~~i~~~~  341 (385)
                      +.+.+..
T Consensus       175 ~~i~~~~  181 (196)
T 3tkl_A          175 AEIKKRM  181 (196)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHh
Confidence            9997654

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.86  E-value=4.2e-21  Score=161.27  Aligned_cols=117  Identities=27%  Similarity=0.563  Sum_probs=109.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+..++..+.+.||||||++++..++..+++++|++|+
T Consensus        21 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~  100 (189)
T 2gf9_A           21 YMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLL  100 (189)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEE
Confidence            46899999999999999999999999988889999999988888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|+.                                                |++|||++|.||+++|.+|+
T Consensus       101 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  180 (189)
T 2gf9_A          101 MYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV  180 (189)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999877                                                89999999999999999999


Q ss_pred             HHHhc
Q psy125          335 RKLIG  339 (385)
Q Consensus       335 ~~i~~  339 (385)
                      +.+.+
T Consensus       181 ~~i~~  185 (189)
T 2gf9_A          181 DVICE  185 (189)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98865

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.86  E-value=1e-21  Score=172.86  Aligned_cols=162  Identities=20%  Similarity=0.244  Sum_probs=115.9

Q ss_pred             CCCceEEEEEcCC---------CCcHHHHHHHHhc---CCCCCcccccc-eeeeEEEE--------------EEeCCeeE
Q psy125            6 DMPSFKCVLVGDG---------GTGKTTFVKRHLT---GEFEKKYVATL-GVEVHPLV--------------FHTNRGAI   58 (385)
Q Consensus         6 ~~~~~~i~lvG~~---------g~GKSTLin~ll~---~~~~~~~~~~~-g~t~~~~~--------------~~~~~~~~   58 (385)
                      .++.+||+|+|.+         |||||||+|+|++   +.+...+.++. +..+....              ...+...+
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            3567999999999         9999999999888   44444444443 22211111              11345678


Q ss_pred             EEEEEe-----------------------CCCccccccchhhhhc---------------------cCcEEEEEEeCCCh
Q psy125           59 RFNVWD-----------------------TAGQEKFGGLRDGYYI---------------------QGQCAIIMFDVTSR   94 (385)
Q Consensus        59 ~~~i~D-----------------------t~g~~~~~~~~~~~~~---------------------~~d~illV~d~~~~   94 (385)
                      .+.+||                       ++|++.+..++..++.                     ++|++|+|||++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            899999                       5555555555566665                     79999999999998


Q ss_pred             --hhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhhhHHHHHHHHh-cCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125           95 --ITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKVKAKSIVFHRK-KNLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus        95 --~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                        .+++.+..|+..+...  ..+.|+++|+||+|+...+...+...++.. .+.+++++||+++.|+++++..|++.+
T Consensus       176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence              8999888888877653  368999999999999765444455556654 467999999999999999999998876

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.86  E-value=2.3e-21  Score=162.12  Aligned_cols=114  Identities=21%  Similarity=0.381  Sum_probs=102.2

Q ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcE
Q psy125          220 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC  299 (385)
Q Consensus       220 ~~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~  299 (385)
                      .....+||+++|.+|||||+|+++++.+.|...+.+|.+ .+ ...+.+++..+.+.||||+|+++|.     |++++|+
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~   88 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDA   88 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSE
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCE
Confidence            345689999999999999999999999999888888843 33 4777888889999999999999886     8899999


Q ss_pred             EEEEEeCCChhhhhh----------------------------------------------------hheeccccCCCch
Q psy125          300 AIIMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFE  327 (385)
Q Consensus       300 ~ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~  327 (385)
                      +|+|||++++.||++                                                    |++|||++|.||+
T Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~  168 (184)
T 3ihw_A           89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVE  168 (184)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHH
Confidence            999999999999988                                                    8999999999999


Q ss_pred             HHHHHHHHHHhcC
Q psy125          328 KPFLWLARKLIGD  340 (385)
Q Consensus       328 ~~f~~l~~~i~~~  340 (385)
                      ++|.+|++.+.+.
T Consensus       169 ~lf~~l~~~i~~~  181 (184)
T 3ihw_A          169 RVFQDVAQKVVAL  181 (184)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.86  E-value=3.3e-21  Score=158.43  Aligned_cols=117  Identities=33%  Similarity=0.652  Sum_probs=109.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++++
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   83 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVL   83 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEE
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEE
Confidence            46899999999999999999999999988899999888888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          303 MFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       303 v~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |||++++.+|++                                               |++|||++|.||+++|.+|++
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  163 (168)
T 1z2a_A           84 VFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE  163 (168)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHH
Confidence            999999999876                                               899999999999999999999


Q ss_pred             HHhc
Q psy125          336 KLIG  339 (385)
Q Consensus       336 ~i~~  339 (385)
                      .+.+
T Consensus       164 ~~~~  167 (168)
T 1z2a_A          164 KHLQ  167 (168)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            8864

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.86  E-value=6.4e-21  Score=165.14  Aligned_cols=161  Identities=14%  Similarity=0.091  Sum_probs=112.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc----c-----cchhh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF----G-----GLRDG   77 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~----~-----~~~~~   77 (385)
                      ...++|+|+|++|||||||+|+|+++.+.  ..+..+.|..............+.+|||||+...    .     .....
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVD--VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEE--EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            46799999999999999999998877654  2334444555444443334578999999998321    1     11234


Q ss_pred             hhccCcEEEEEEeCCChhhhhc--HHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh-----HHHHHHHHhcC--CeEEEE
Q psy125           78 YYIQGQCAIIMFDVTSRITYKN--VPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-----AKSIVFHRKKN--LQYYDI  148 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~~~~~--~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~--~~~~~~  148 (385)
                      ++..+|++|+|+|++++.++..  ...|+..+.....+.|+++|+||+|+......     .....+....+  .+++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF  184 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence            5678899999999999877652  22455555543358999999999998654321     13344555555  789999


Q ss_pred             cCCCCCChHHHHHHHHHHHhc
Q psy125          149 SAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      ||+++.|+++++..|++.+..
T Consensus       185 SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          185 STLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHH
T ss_pred             ecccCCCHHHHHHHHHHHHHH
Confidence            999999999999999998743

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.86  E-value=3.9e-21  Score=162.00  Aligned_cols=119  Identities=30%  Similarity=0.541  Sum_probs=110.6

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.+++|.++....+.+++..+.+.||||||++++..++..+++++|++|
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi  102 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGAL  102 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEE
Confidence            34699999999999999999999999998888999999998888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      +|||++++.+|+.                                                |++|||++|.||+++|.+|
T Consensus       103 ~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  182 (193)
T 2oil_A          103 LVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETV  182 (193)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999876                                                7999999999999999999


Q ss_pred             HHHHhcC
Q psy125          334 ARKLIGD  340 (385)
Q Consensus       334 ~~~i~~~  340 (385)
                      ++.+.++
T Consensus       183 ~~~i~~~  189 (193)
T 2oil_A          183 LKEIFAK  189 (193)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.86  E-value=4.8e-21  Score=159.45  Aligned_cols=118  Identities=31%  Similarity=0.609  Sum_probs=108.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+.++....+..++..+.+.+|||||++.+..++..+++++|++|+
T Consensus         8 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   87 (181)
T 3tw8_B            8 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIV   87 (181)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999988888889999989988888889888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          303 MFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       303 v~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |||++++.+|++                                               |++|||++|.||+++|.+|++
T Consensus        88 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  167 (181)
T 3tw8_B           88 VYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITE  167 (181)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999999987                                               799999999999999999999


Q ss_pred             HHhcC
Q psy125          336 KLIGD  340 (385)
Q Consensus       336 ~i~~~  340 (385)
                      .+...
T Consensus       168 ~~~~~  172 (181)
T 3tw8_B          168 LVLRA  172 (181)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=3.8e-21  Score=162.20  Aligned_cols=120  Identities=31%  Similarity=0.580  Sum_probs=112.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus        14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   93 (195)
T 1x3s_A           14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   93 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence            46899999999999999999999999988999999999988888889889999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|++                                                |++|||++|.||+++|.+|+
T Consensus        94 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  173 (195)
T 1x3s_A           94 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV  173 (195)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999998876                                                79999999999999999999


Q ss_pred             HHHhcCCC
Q psy125          335 RKLIGDPN  342 (385)
Q Consensus       335 ~~i~~~~~  342 (385)
                      +.+...+.
T Consensus       174 ~~~~~~~~  181 (195)
T 1x3s_A          174 EKIIQTPG  181 (195)
T ss_dssp             HHHHTSGG
T ss_pred             HHHHhhhh
Confidence            99987543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.86  E-value=4.4e-21  Score=160.17  Aligned_cols=118  Identities=31%  Similarity=0.519  Sum_probs=108.7

Q ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125          221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA  300 (385)
Q Consensus       221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~  300 (385)
                      ....+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+..++..+.+.+|||||++++..++..+++++|++
T Consensus        15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   93 (183)
T 3kkq_A           15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   93 (183)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEE
Confidence            34679999999999999999999999999999999988776 66777888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhhh-------------------------------------------------hheeccc-cCCCchHHH
Q psy125          301 IIMFDVTSRITYKN-------------------------------------------------YYDISAK-SNYNFEKPF  330 (385)
Q Consensus       301 ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak-~~~~v~~~f  330 (385)
                      |+|||++++.||++                                                 |++|||+ +|.||+++|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~  173 (183)
T 3kkq_A           94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF  173 (183)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHH
Confidence            99999999999877                                                 8999999 999999999


Q ss_pred             HHHHHHHhc
Q psy125          331 LWLARKLIG  339 (385)
Q Consensus       331 ~~l~~~i~~  339 (385)
                      .+|++.+.+
T Consensus       174 ~~l~~~i~~  182 (183)
T 3kkq_A          174 HDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            999998864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.86  E-value=1.5e-21  Score=165.52  Aligned_cols=117  Identities=32%  Similarity=0.582  Sum_probs=100.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil  106 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLL  106 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEE
Confidence            46999999999999999999999999988899999999988888899988999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------------hheeccccCCCchH
Q psy125          303 MFDVTSRITYKN------------------------------------------------------YYDISAKSNYNFEK  328 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v~~  328 (385)
                      |||++++.+|++                                                      |++|||++|.||++
T Consensus       107 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~e  186 (199)
T 2p5s_A          107 LYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVE  186 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHH
Confidence            999999999877                                                      78999999999999


Q ss_pred             HHHHHHHHHhc
Q psy125          329 PFLWLARKLIG  339 (385)
Q Consensus       329 ~f~~l~~~i~~  339 (385)
                      +|.+|++.+.+
T Consensus       187 l~~~l~~~i~~  197 (199)
T 2p5s_A          187 AVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHHh
Confidence            99999999864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.86  E-value=4e-21  Score=159.44  Aligned_cols=118  Identities=32%  Similarity=0.666  Sum_probs=106.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.|.++....+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus         6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   85 (177)
T 1wms_A            6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   85 (177)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEE
Confidence            46899999999999999999999999988899999999888888889888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||++++.+|++                                                    |++|||++|.||+++|
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (177)
T 1wms_A           86 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF  165 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHH
Confidence            999999998865                                                    8999999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      .+|++.+.+.
T Consensus       166 ~~l~~~~~~~  175 (177)
T 1wms_A          166 EEAVRRVLAT  175 (177)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhh
Confidence            9999999764

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.86  E-value=1.5e-21  Score=164.51  Aligned_cols=119  Identities=29%  Similarity=0.594  Sum_probs=103.4

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.+|||||++++..++..+++++|++|
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii  103 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII  103 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence            35689999999999999999999988888888999998998888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHH
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      +|||++++.+|++                                                 |++|||++|.||+++|.+
T Consensus       104 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~  183 (192)
T 2il1_A          104 LVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLK  183 (192)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999976                                                 789999999999999999


Q ss_pred             HHHHHhcC
Q psy125          333 LARKLIGD  340 (385)
Q Consensus       333 l~~~i~~~  340 (385)
                      |++.+.++
T Consensus       184 l~~~i~~~  191 (192)
T 2il1_A          184 LVDDILKK  191 (192)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.86  E-value=2.6e-21  Score=160.73  Aligned_cols=118  Identities=32%  Similarity=0.594  Sum_probs=109.6

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++|
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence            35699999999999999999999999998889999998988888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      +|||++++.+|++                                                |++|||++|.||+++|.+|
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  172 (179)
T 1z0f_A           93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  172 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999876                                                7999999999999999999


Q ss_pred             HHHHhc
Q psy125          334 ARKLIG  339 (385)
Q Consensus       334 ~~~i~~  339 (385)
                      ++.+.+
T Consensus       173 ~~~i~~  178 (179)
T 1z0f_A          173 AKKIYQ  178 (179)
T ss_dssp             HHHHC-
T ss_pred             HHHHhh
Confidence            998864

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.86  E-value=3.2e-21  Score=161.71  Aligned_cols=116  Identities=18%  Similarity=0.289  Sum_probs=101.8

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.|...+.+|++.++ ...+.+++..+.+.||||+|++++..+ ..|++++|++|
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~i   96 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFL   96 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEE
Confidence            4579999999999999999999999999999999998776 455677888899999999999999886 67999999999


Q ss_pred             EEEeCCChhhhhh---------------------------------------------------hheecc-ccCCCchHH
Q psy125          302 IMFDVTSRITYKN---------------------------------------------------YYDISA-KSNYNFEKP  329 (385)
Q Consensus       302 lv~d~~~~~s~~~---------------------------------------------------~~e~Sa-k~~~~v~~~  329 (385)
                      +|||++++.||++                                                   |++||| ++|.||+++
T Consensus        97 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~l  176 (187)
T 3c5c_A           97 VVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHV  176 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHH
Confidence            9999999999986                                                   899999 899999999


Q ss_pred             HHHHHHHHhc
Q psy125          330 FLWLARKLIG  339 (385)
Q Consensus       330 f~~l~~~i~~  339 (385)
                      |.+|++.+.+
T Consensus       177 f~~l~~~i~~  186 (187)
T 3c5c_A          177 FHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999998854

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.86  E-value=3.8e-21  Score=165.96  Aligned_cols=123  Identities=30%  Similarity=0.534  Sum_probs=104.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||+++|..++..+++++|++|+
T Consensus        12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vil   91 (223)
T 3cpj_B           12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALI   91 (223)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEE
T ss_pred             eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEE
Confidence            46899999999999999999999999988889999988888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|++                                                |++|||++|.||+++|.+|+
T Consensus        92 V~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  171 (223)
T 3cpj_B           92 VYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI  171 (223)
T ss_dssp             EEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999886                                                88999999999999999999


Q ss_pred             HHHhcCCCccc
Q psy125          335 RKLIGDPNLEF  345 (385)
Q Consensus       335 ~~i~~~~~~~~  345 (385)
                      +.+........
T Consensus       172 ~~i~~~~~~~~  182 (223)
T 3cpj_B          172 NTIYQKVSKHQ  182 (223)
T ss_dssp             HHHTTCC----
T ss_pred             HHHHHHhhhcc
Confidence            99987655433

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.86  E-value=2.6e-21  Score=166.39  Aligned_cols=134  Identities=55%  Similarity=0.909  Sum_probs=116.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCe-eEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+.+.....+...+. .+.+.||||||++++..++..+++++|++|
T Consensus        10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   89 (218)
T 4djt_A           10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAI   89 (218)
T ss_dssp             CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEE
Confidence            5699999999999999999999988898888999988887777665543 488999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      +|||++++.+|++                                                |++|||++|.||+++|.+|
T Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  169 (218)
T 4djt_A           90 LFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHL  169 (218)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHH
Confidence            9999999999887                                                8999999999999999999


Q ss_pred             HHHHhcCCCcccccCCCCCCCcc
Q psy125          334 ARKLIGDPNLEFVAMPALLPPEV  356 (385)
Q Consensus       334 ~~~i~~~~~~~~~~~~~~~~~~~  356 (385)
                      ++.+...............++..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~  192 (218)
T 4djt_A          170 ARIFTGRPDLIFVSNVNLEPTEV  192 (218)
T ss_dssp             HHHHHCCTTCCBCSCCCCCBCCC
T ss_pred             HHHHhcccccccccccCcCCCcc
Confidence            99999887766555444444433

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.86  E-value=7.4e-21  Score=163.06  Aligned_cols=157  Identities=19%  Similarity=0.265  Sum_probs=108.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCcccccc-chhhhhccCcE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGG-LRDGYYIQGQC   84 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~-~~~~~~~~~d~   84 (385)
                      .+.+||+++|++|||||||+++|+++.+...+.++. ....  ....+.. .+.+.+|||||++.+.. .+..+++++|+
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   81 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA   81 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence            457899999999999999999999888766554332 2222  2444433 68999999999998877 67788999999


Q ss_pred             EEEEEeCCChh-hhhcHHHHHH-HHHH---hcCCCCEEEEEeCCCCcchhhhHHHH----HHHH----------------
Q psy125           85 AIIMFDVTSRI-TYKNVPNWHR-DLVR---VCENIPIVLCGNKVDIKDRKVKAKSI----VFHR----------------  139 (385)
Q Consensus        85 illV~d~~~~~-~~~~~~~~~~-~l~~---~~~~~~~ilv~nK~Dl~~~~~~~~~~----~~~~----------------  139 (385)
                      +|+|+|+++.. .+.....++. .+..   ...+.|+++|+||+|+..........    ....                
T Consensus        82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~  161 (214)
T 2fh5_B           82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS  161 (214)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred             EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence            99999999854 3444433333 3322   12468999999999986543211111    1111                


Q ss_pred             -----------------hc--CCeEEEEcCCCC------CChHHHHHHHHHH
Q psy125          140 -----------------KK--NLQYYDISAKSN------YNFEKPFLWLARK  166 (385)
Q Consensus       140 -----------------~~--~~~~~~~Sa~~~------~gi~~l~~~i~~~  166 (385)
                                       ..  ...++++||+++      .|+++++.+|++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                             00  457999999999      9999999999875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.86  E-value=2e-21  Score=164.96  Aligned_cols=120  Identities=22%  Similarity=0.327  Sum_probs=105.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+.++ ...+..++..+.+.||||||++++..++..+++++|++|+
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  101 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVL  101 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEE
Confidence            579999999999999999999999999999999988776 5666667778899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.+|+.                                                 |++|||++|.||+++|.+|
T Consensus       102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  181 (201)
T 3oes_A          102 VYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV  181 (201)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Confidence            999999999977                                                 8999999999999999999


Q ss_pred             HHHHhcCCCc
Q psy125          334 ARKLIGDPNL  343 (385)
Q Consensus       334 ~~~i~~~~~~  343 (385)
                      ++.+.+....
T Consensus       182 ~~~i~~~~~~  191 (201)
T 3oes_A          182 IQEIARVENS  191 (201)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHhhhhh
Confidence            9999876543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=2.3e-21  Score=163.36  Aligned_cols=118  Identities=30%  Similarity=0.508  Sum_probs=109.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus        22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iil  101 (192)
T 2fg5_A           22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVI  101 (192)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEE
Confidence            46999999999999999999999999888899999999998888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|++                                                |++|||++|.||+++|.+|+
T Consensus       102 V~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  181 (192)
T 2fg5_A          102 VYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGIS  181 (192)
T ss_dssp             EEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999876                                                79999999999999999999


Q ss_pred             HHHhcC
Q psy125          335 RKLIGD  340 (385)
Q Consensus       335 ~~i~~~  340 (385)
                      +.+.+.
T Consensus       182 ~~i~~~  187 (192)
T 2fg5_A          182 RQIPPL  187 (192)
T ss_dssp             HTCC--
T ss_pred             HHHHhh
Confidence            987554

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.85  E-value=3.6e-21  Score=161.11  Aligned_cols=118  Identities=31%  Similarity=0.618  Sum_probs=110.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus         9 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   88 (186)
T 2bme_A            9 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   88 (186)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEE
Confidence            46899999999999999999999999988889999888888888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|++                                                |++|||++|.||+++|.+|+
T Consensus        89 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  168 (186)
T 2bme_A           89 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA  168 (186)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999876                                                89999999999999999999


Q ss_pred             HHHhcC
Q psy125          335 RKLIGD  340 (385)
Q Consensus       335 ~~i~~~  340 (385)
                      +.+.+.
T Consensus       169 ~~~~~~  174 (186)
T 2bme_A          169 RKILNK  174 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.85  E-value=2.8e-21  Score=160.99  Aligned_cols=119  Identities=34%  Similarity=0.574  Sum_probs=109.6

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   89 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAI   89 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEE
Confidence            35689999999999999999999999998888899998888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      +|||++++.+|+.                                                |++|||++|.||+++|.+|
T Consensus        90 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  169 (181)
T 2efe_B           90 IVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEI  169 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence            9999999999877                                                8999999999999999999


Q ss_pred             HHHHhcC
Q psy125          334 ARKLIGD  340 (385)
Q Consensus       334 ~~~i~~~  340 (385)
                      ++.+...
T Consensus       170 ~~~~~~~  176 (181)
T 2efe_B          170 ARRLPRV  176 (181)
T ss_dssp             HHTCC--
T ss_pred             HHHHHhc
Confidence            9987654

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.85  E-value=5.1e-21  Score=163.04  Aligned_cols=120  Identities=29%  Similarity=0.594  Sum_probs=111.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|++++..+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vil   86 (206)
T 2bcg_Y            7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   86 (206)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEE
Confidence            46899999999999999999999999988899999999888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|+.                                                |++|||++|.||+++|.+|+
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  166 (206)
T 2bcg_Y           87 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA  166 (206)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999876                                                89999999999999999999


Q ss_pred             HHHhcCCC
Q psy125          335 RKLIGDPN  342 (385)
Q Consensus       335 ~~i~~~~~  342 (385)
                      +.+.....
T Consensus       167 ~~i~~~~~  174 (206)
T 2bcg_Y          167 RQIKESMS  174 (206)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHh
Confidence            99987543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.85  E-value=9.9e-21  Score=159.73  Aligned_cols=155  Identities=13%  Similarity=0.168  Sum_probs=105.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCC----------ccccccchh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG----------QEKFGGLRD   76 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g----------~~~~~~~~~   76 (385)
                      ...++|+|+|++|||||||+|+|+++.+...+.+++|.|+.......+.   .+.+|||||          .+.+.....
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   97 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIE   97 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHH
Confidence            3568999999999999999999988877777888888888777665543   589999999          444445556


Q ss_pred             hhhccC---cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH----HHHH-HHHhcCCeEEEE
Q psy125           77 GYYIQG---QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----KSIV-FHRKKNLQYYDI  148 (385)
Q Consensus        77 ~~~~~~---d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~----~~~~-~~~~~~~~~~~~  148 (385)
                      .++..+   |++++|+|+++..++.... +...+..  .+.|+++|+||+|+.......    +... +......+++++
T Consensus        98 ~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (195)
T 1svi_A           98 TYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEEC
T ss_pred             HHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEE
Confidence            666666   9999999999876665421 2222222  578999999999987654322    2222 222235689999


Q ss_pred             cCCCCCChHHHHHHHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l  167 (385)
                      ||+++.|+++++.+|.+.+
T Consensus       175 Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          175 SSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHH
T ss_pred             EccCCCCHHHHHHHHHHHh
Confidence            9999999999999998876

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.85  E-value=5.1e-21  Score=157.13  Aligned_cols=115  Identities=29%  Similarity=0.493  Sum_probs=104.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      +.+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            358999999999999999999999999888889987665 3556778888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHH
Q psy125          303 MFDVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       303 v~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |||++++.||++                                                  |++|||++|.||+++|.+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            999999999887                                                  789999999999999999


Q ss_pred             HHHHHh
Q psy125          333 LARKLI  338 (385)
Q Consensus       333 l~~~i~  338 (385)
                      |++.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            999874

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.85  E-value=5.5e-21  Score=162.42  Aligned_cols=118  Identities=28%  Similarity=0.571  Sum_probs=110.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+..++..+.+.||||||++++..++..+++++|++|+
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   86 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL   86 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence            45899999999999999999999999888889999999988888888889999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|+.                                                |++|||++|.||+++|.+|+
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  166 (203)
T 1zbd_A           87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  166 (203)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999876                                                79999999999999999999


Q ss_pred             HHHhcC
Q psy125          335 RKLIGD  340 (385)
Q Consensus       335 ~~i~~~  340 (385)
                      +.+.++
T Consensus       167 ~~i~~~  172 (203)
T 1zbd_A          167 DVICEK  172 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=4e-22  Score=167.84  Aligned_cols=119  Identities=26%  Similarity=0.554  Sum_probs=111.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+..++..+.+.||||||++++..++..+++++|++|+
T Consensus        22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  101 (191)
T 3dz8_A           22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFIL  101 (191)
T ss_dssp             ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEE
T ss_pred             eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEE
Confidence            46899999999999999999999999888999999999998888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|+.                                                |++|||++|.||+++|.+|+
T Consensus       102 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  181 (191)
T 3dz8_A          102 MYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV  181 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999987                                                89999999999999999999


Q ss_pred             HHHhcCC
Q psy125          335 RKLIGDP  341 (385)
Q Consensus       335 ~~i~~~~  341 (385)
                      +.+.+..
T Consensus       182 ~~i~~~~  188 (191)
T 3dz8_A          182 DAICDKM  188 (191)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            9987653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.85  E-value=4.4e-21  Score=158.00  Aligned_cols=117  Identities=29%  Similarity=0.605  Sum_probs=102.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+++++.+.+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++|+|
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v   82 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   82 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEE
Confidence            58999999999999999999999998888889988888888888888888999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          304 FDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       304 ~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      ||++++.+|++                                               |++|||++|.||+++|.+|++.
T Consensus        83 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  162 (170)
T 1g16_A           83 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL  162 (170)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999876                                               8999999999999999999999


Q ss_pred             HhcC
Q psy125          337 LIGD  340 (385)
Q Consensus       337 i~~~  340 (385)
                      +.++
T Consensus       163 ~~~~  166 (170)
T 1g16_A          163 IQEK  166 (170)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            8764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.85  E-value=6.5e-21  Score=158.65  Aligned_cols=119  Identities=28%  Similarity=0.508  Sum_probs=108.1

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.++.+..+. ..+..++..+.+.+|||||++++..++..+++++|+++
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   85 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFL   85 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEE
Confidence            35689999999999999999999999998889999887765 66677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHH
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      +|||++++.+|+.                                                 |++|||++|.||+++|.+
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  165 (181)
T 2fn4_A           86 LVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQ  165 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence            9999999998876                                                 799999999999999999


Q ss_pred             HHHHHhcCC
Q psy125          333 LARKLIGDP  341 (385)
Q Consensus       333 l~~~i~~~~  341 (385)
                      |++.+.+..
T Consensus       166 l~~~~~~~~  174 (181)
T 2fn4_A          166 LVRAVRKYQ  174 (181)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhh
Confidence            999987643

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.85  E-value=2.8e-21  Score=163.88  Aligned_cols=118  Identities=32%  Similarity=0.624  Sum_probs=99.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus        24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~  103 (200)
T 2o52_A           24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL  103 (200)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEE
Confidence            46999999999999999999999998888888999888888888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|++                                                |++|||++|.||+++|.+|+
T Consensus       104 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~  183 (200)
T 2o52_A          104 VYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA  183 (200)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999887                                                79999999999999999999


Q ss_pred             HHHhcC
Q psy125          335 RKLIGD  340 (385)
Q Consensus       335 ~~i~~~  340 (385)
                      +.+..+
T Consensus       184 ~~i~~~  189 (200)
T 2o52_A          184 RTILNK  189 (200)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.85  E-value=2.7e-21  Score=163.32  Aligned_cols=120  Identities=23%  Similarity=0.262  Sum_probs=102.3

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc-ccccccccCcEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-LRDGYYIQGQCA  300 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~  300 (385)
                      ...+||+++|.+|||||+|++++....+...+.++.+.+.....+.+++..+.+.+|||+|++++.. ++..|+++++++
T Consensus        21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~  100 (195)
T 3cbq_A           21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF  100 (195)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence            3569999999999999999999865444334445555666677778888899999999999998775 788899999999


Q ss_pred             EEEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHH
Q psy125          301 IIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       301 ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      |+|||++++.||++                                                 |+||||++|.||+++|.
T Consensus       101 ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~  180 (195)
T 3cbq_A          101 LIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFE  180 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHH
Confidence            99999999999987                                                 89999999999999999


Q ss_pred             HHHHHHhcCC
Q psy125          332 WLARKLIGDP  341 (385)
Q Consensus       332 ~l~~~i~~~~  341 (385)
                      +|++.+....
T Consensus       181 ~l~~~i~~~~  190 (195)
T 3cbq_A          181 GAVRQIRLRR  190 (195)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHHhc
Confidence            9999987643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=1.1e-20  Score=157.18  Aligned_cols=119  Identities=31%  Similarity=0.649  Sum_probs=100.6

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccc-cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA  300 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~  300 (385)
                      ...+||+++|.+|||||+|+++++.+.+. ..+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i   87 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHAL   87 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEE
Confidence            35689999999999999999999988874 46788888888888878888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHH
Q psy125          301 IIMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       301 ilv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |+|||++++.+|++                                                |++|||++|.||+++|.+
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  167 (180)
T 2g6b_A           88 LLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTA  167 (180)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999876                                                899999999999999999


Q ss_pred             HHHHHhcC
Q psy125          333 LARKLIGD  340 (385)
Q Consensus       333 l~~~i~~~  340 (385)
                      |++.+.+.
T Consensus       168 l~~~~~~~  175 (180)
T 2g6b_A          168 IAKELKRR  175 (180)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHHHH
Confidence            99998754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.85  E-value=1.5e-20  Score=169.82  Aligned_cols=159  Identities=21%  Similarity=0.275  Sum_probs=119.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCcccc-----ccchhhhhcc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKF-----GGLRDGYYIQ   81 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~-----~~~~~~~~~~   81 (385)
                      ..+||+|+|++|||||||+|+++++. .....+.++.|......... .+.+.+.+|||||++.+     ...+..++++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~-~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   80 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNY-SAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQM   80 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCC-CTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHTT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCC-CCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhcc
Confidence            46899999999999999999977763 22222334444443333222 24789999999999887     6778888899


Q ss_pred             CcEEEEEEeCCChhhhhcHHHHHH---HHHHhcCCCCEEEEEeCCCCcc--hhh------hHHHHHHHHhcC---CeEEE
Q psy125           82 GQCAIIMFDVTSRITYKNVPNWHR---DLVRVCENIPIVLCGNKVDIKD--RKV------KAKSIVFHRKKN---LQYYD  147 (385)
Q Consensus        82 ~d~illV~d~~~~~~~~~~~~~~~---~l~~~~~~~~~ilv~nK~Dl~~--~~~------~~~~~~~~~~~~---~~~~~  147 (385)
                      +|++|+|||++++.+++++..|..   .+.....+.|+++|+||+|+..  .+.      ..+...+....+   .++++
T Consensus        81 ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~  160 (307)
T 3r7w_A           81 VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFP  160 (307)
T ss_dssp             CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEE
T ss_pred             CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEE
Confidence            999999999999999988766644   4443456899999999999876  221      234555666665   69999


Q ss_pred             EcCCCCCChHHHHHHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      +||++ .++.+.+..+++.+.
T Consensus       161 tSa~~-~~i~e~~~~iv~~li  180 (307)
T 3r7w_A          161 TSIWD-ESLYKAWSQIVCSLI  180 (307)
T ss_dssp             CCTTS-SHHHHHHHHHHHTTC
T ss_pred             eeecC-ChHHHHHHHHHHHHc
Confidence            99999 789999988887653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.85  E-value=5.3e-21  Score=157.47  Aligned_cols=117  Identities=23%  Similarity=0.280  Sum_probs=90.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc-ccccccccCcEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-LRDGYYIQGQCAII  302 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~il  302 (385)
                      .+||+++|.+|||||+|++++....+...+.++.+.+.....+.+++..+.+.+|||||++++.. ++..+++++|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            47999999999999999999987777666666666777778888899899999999999999876 77888999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.||+.                                                 |++|||++|.||+++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            999999999988                                                 8999999999999999999


Q ss_pred             HHHHhcC
Q psy125          334 ARKLIGD  340 (385)
Q Consensus       334 ~~~i~~~  340 (385)
                      ++.+...
T Consensus       162 ~~~i~~~  168 (169)
T 3q85_A          162 VRQIRLR  168 (169)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9988654

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.85  E-value=5e-21  Score=157.14  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=80.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|++++....+ ..+.++.|+++ ...+.+++..+.+.+|||+|++++..++..+++.+|++++|
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v   79 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV   79 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence            47999999999999999999875443 45567777776 45667888899999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          304 FDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      ||++++.||++                                                 |++|||++|.||+++|.+|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  159 (166)
T 3q72_A           80 YSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV  159 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHH
Confidence            99999999987                                                 89999999999999999999


Q ss_pred             HHHhc
Q psy125          335 RKLIG  339 (385)
Q Consensus       335 ~~i~~  339 (385)
                      +.+..
T Consensus       160 ~~~~~  164 (166)
T 3q72_A          160 RQIRL  164 (166)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98864

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.85  E-value=3.4e-21  Score=161.80  Aligned_cols=118  Identities=31%  Similarity=0.564  Sum_probs=105.5

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC-cccccccccCcEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-GLRDGYYIQGQCA  300 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~~~~~~~~~  300 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++. .++..+++++|++
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~i   97 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAV   97 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEE
Confidence            357999999999999999999999999988899999988888888888888999999999999998 8889999999999


Q ss_pred             EEEEeCCChhhhhh-------------------------------------------------hheeccccC---CCchH
Q psy125          301 IIMFDVTSRITYKN-------------------------------------------------YYDISAKSN---YNFEK  328 (385)
Q Consensus       301 ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~---~~v~~  328 (385)
                      |+|||++++.||+.                                                 |++|||++|   .||++
T Consensus        98 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~  177 (189)
T 1z06_A           98 VFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEA  177 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHH
Confidence            99999999999877                                                 899999999   99999


Q ss_pred             HHHHHHHHHhc
Q psy125          329 PFLWLARKLIG  339 (385)
Q Consensus       329 ~f~~l~~~i~~  339 (385)
                      +|.+|++++.+
T Consensus       178 l~~~l~~~i~~  188 (189)
T 1z06_A          178 IFMTLAHKLKS  188 (189)
T ss_dssp             HHHHHC-----
T ss_pred             HHHHHHHHHhh
Confidence            99999988753

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.85  E-value=1.3e-20  Score=160.60  Aligned_cols=119  Identities=32%  Similarity=0.642  Sum_probs=110.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (207)
T 1vg8_A            7 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVL   86 (207)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEE
Confidence            56899999999999999999999999988999999999988888888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||++++.+|++                                                    |++|||++|.||+++|
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  166 (207)
T 1vg8_A           87 VFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAF  166 (207)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHH
Confidence            999999998765                                                    7999999999999999


Q ss_pred             HHHHHHHhcCC
Q psy125          331 LWLARKLIGDP  341 (385)
Q Consensus       331 ~~l~~~i~~~~  341 (385)
                      .+|++.+....
T Consensus       167 ~~l~~~~~~~~  177 (207)
T 1vg8_A          167 QTIARNALKQE  177 (207)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            99999998643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.85  E-value=1.2e-20  Score=161.54  Aligned_cols=118  Identities=28%  Similarity=0.484  Sum_probs=105.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|++++..+.|...+.+|++..+ ...+.+++..+.+.||||||+++|..++..+++++|++|+
T Consensus         8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il   86 (212)
T 2j0v_A            8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL   86 (212)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence            569999999999999999999999999888899988655 4556678888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh---------------------------------------------------------hheeccccCCC
Q psy125          303 MFDVTSRITYKN---------------------------------------------------------YYDISAKSNYN  325 (385)
Q Consensus       303 v~d~~~~~s~~~---------------------------------------------------------~~e~Sak~~~~  325 (385)
                      |||++++.+|++                                                         |++|||++|.|
T Consensus        87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~g  166 (212)
T 2j0v_A           87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQN  166 (212)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCC
Confidence            999999998875                                                         78999999999


Q ss_pred             chHHHHHHHHHHhcCC
Q psy125          326 FEKPFLWLARKLIGDP  341 (385)
Q Consensus       326 v~~~f~~l~~~i~~~~  341 (385)
                      |+++|.+|++.+....
T Consensus       167 i~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          167 VKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             HHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHhhhh
Confidence            9999999999998754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.84  E-value=1.8e-20  Score=168.59  Aligned_cols=196  Identities=16%  Similarity=0.115  Sum_probs=136.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc---------ccccchhh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE---------KFGGLRDG   77 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~---------~~~~~~~~   77 (385)
                      .+..+|+|+|++|||||||+|+|++... ....+.+++|+.........+...+.+|||||..         .+......
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~-~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKI-SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSE-EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCc-cccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            4567899999999999999999887653 2334556666665554455566789999999987         23344556


Q ss_pred             hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc-hhh-hHHHHHHHHhcCC-eEEEEcCCCCC
Q psy125           78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD-RKV-KAKSIVFHRKKNL-QYYDISAKSNY  154 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~-~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~  154 (385)
                      ++..+|++++|+|+++   +.....++..... ..+.|+++++||+|+.. ... ......+....+. .++++||+++.
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~  160 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL  160 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence            7789999999999976   3333344433332 24789999999999876 222 2333334444444 78999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhh
Q psy125          155 NFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDL  215 (385)
Q Consensus       155 gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~  215 (385)
                      |+++++..+...+...        ++.+++....|.+.+....+.+++...+.+.++.|+.
T Consensus       161 ~v~~l~~~i~~~l~~~--------~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~  213 (301)
T 1ega_A          161 NVDTIAAIVRKHLPEA--------THHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYS  213 (301)
T ss_dssp             THHHHHHHHHTTCCBC--------CCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTT
T ss_pred             CHHHHHHHHHHhCCcC--------CCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeE
Confidence            9999999998876544        2344445556666666677778887776666555543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.84  E-value=7.2e-21  Score=158.12  Aligned_cols=112  Identities=19%  Similarity=0.360  Sum_probs=99.9

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|++++..+.|.. +.+|++..+ ...+.+++..+.+.||||||+++     ..|++++|++|
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            357999999999999999999999988876 788887554 56677888889999999999987     56899999999


Q ss_pred             EEEeCCChhhhhh------------------------------------------------------hheeccccCCCch
Q psy125          302 IMFDVTSRITYKN------------------------------------------------------YYDISAKSNYNFE  327 (385)
Q Consensus       302 lv~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v~  327 (385)
                      +|||++++.||++                                                      |++|||++|.||+
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            9999999999887                                                      8999999999999


Q ss_pred             HHHHHHHHHHhcC
Q psy125          328 KPFLWLARKLIGD  340 (385)
Q Consensus       328 ~~f~~l~~~i~~~  340 (385)
                      ++|.+|++.+...
T Consensus       158 ~lf~~l~~~~~~~  170 (178)
T 2iwr_A          158 RVFQEVAQKVVTL  170 (178)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.84  E-value=8e-21  Score=159.97  Aligned_cols=116  Identities=18%  Similarity=0.299  Sum_probs=96.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC--ccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc-cCcccccccccCcE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQC  299 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~~~  299 (385)
                      ..+||+++|.+|||||||+++|+..  .|...+ +++|.++..+.+.+++..+.+.+|||+|++. +..+...|++.+|+
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~   83 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA   83 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence            4689999999999999999999853  344443 3466677777788898888999999999877 56678889999999


Q ss_pred             EEEEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHH
Q psy125          300 AIIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       300 ~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      +|+|||++++.||+.                                                 |+||||++|.||+++|
T Consensus        84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf  163 (192)
T 2cjw_A           84 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELF  163 (192)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHH
Confidence            999999999999987                                                 7999999999999999


Q ss_pred             HHHHHHHhc
Q psy125          331 LWLARKLIG  339 (385)
Q Consensus       331 ~~l~~~i~~  339 (385)
                      .+|++.+..
T Consensus       164 ~~l~~~~~~  172 (192)
T 2cjw_A          164 EGIVRQVRL  172 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998854

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.84  E-value=7.4e-21  Score=158.02  Aligned_cols=117  Identities=31%  Similarity=0.626  Sum_probs=108.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+.++....+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~   92 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV   92 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            46899999999999999999999999988899999888888888889888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|+.                                                |++|||++|.||+++|.+|+
T Consensus        93 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  172 (179)
T 2y8e_A           93 VYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVA  172 (179)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999876                                                79999999999999999999


Q ss_pred             HHHhc
Q psy125          335 RKLIG  339 (385)
Q Consensus       335 ~~i~~  339 (385)
                      +.+..
T Consensus       173 ~~~~~  177 (179)
T 2y8e_A          173 AALPG  177 (179)
T ss_dssp             HTCC-
T ss_pred             HHHhh
Confidence            87643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.84  E-value=1e-20  Score=158.19  Aligned_cols=117  Identities=25%  Similarity=0.391  Sum_probs=105.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|++++..+.+...+.+|++..+ ...+.+++..+.+.+|||||+++|..++..+++++|++|+
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   84 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   84 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence            568999999999999999999999999888899987666 4556778888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125          303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK  321 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak  321 (385)
                      |||++++.||++                                                             |+||||+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~  164 (184)
T 1m7b_A           85 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  164 (184)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeec
Confidence            999999999875                                                             7899999


Q ss_pred             -cCCCchHHHHHHHHHHhcC
Q psy125          322 -SNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       322 -~~~~v~~~f~~l~~~i~~~  340 (385)
                       +|.||+++|.+|++.++.+
T Consensus       165 ~~~~gi~~l~~~i~~~~l~k  184 (184)
T 1m7b_A          165 QSENSVRDIFHVATLACVNK  184 (184)
T ss_dssp             TBHHHHHHHHHHHHHHHHTC
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence             6899999999999988753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.84  E-value=2.1e-20  Score=156.29  Aligned_cols=118  Identities=30%  Similarity=0.503  Sum_probs=106.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   82 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence            468999999999999999999999999888888887555 4556778888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125          303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK  321 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak  321 (385)
                      |||++++.||++                                                             |++|||+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  162 (186)
T 1mh1_A           83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (186)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCC
Confidence            999999999876                                                             5789999


Q ss_pred             cCCCchHHHHHHHHHHhcCC
Q psy125          322 SNYNFEKPFLWLARKLIGDP  341 (385)
Q Consensus       322 ~~~~v~~~f~~l~~~i~~~~  341 (385)
                      +|.||+++|.+|++.+...+
T Consensus       163 ~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          163 TQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             TCTTHHHHHHHHHHHHSCCC
T ss_pred             CccCHHHHHHHHHHHHhccc
Confidence            99999999999999997654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=6.4e-21  Score=162.46  Aligned_cols=118  Identities=18%  Similarity=0.286  Sum_probs=99.5

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCc--cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc-cCcccccccccCc
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGE--FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-FGGLRDGYYIQGQ  298 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-~~~~~~~~~~~~~  298 (385)
                      ...+||+++|.+|||||+|+++|+...  |...+ +++|.++..+.+.+++..+.+.+|||+|++. +..+...|++.++
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~  113 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGD  113 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCC
Confidence            356999999999999999999998533  34443 3466777777788888888999999999987 5667788999999


Q ss_pred             EEEEEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHH
Q psy125          299 CAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       299 ~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      ++|+|||++++.||+.                                                 |+||||++|.||+++
T Consensus       114 ~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~el  193 (211)
T 2g3y_A          114 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  193 (211)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            9999999999999987                                                 799999999999999


Q ss_pred             HHHHHHHHhcC
Q psy125          330 FLWLARKLIGD  340 (385)
Q Consensus       330 f~~l~~~i~~~  340 (385)
                      |.+|++.+...
T Consensus       194 f~~l~~~i~~~  204 (211)
T 2g3y_A          194 FEGIVRQVRLR  204 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999988643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.84  E-value=1.4e-20  Score=159.71  Aligned_cols=118  Identities=31%  Similarity=0.434  Sum_probs=98.6

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.+|.+..+ ...+..++..+.+.+|||||+++|..++..+++++|++|
T Consensus        18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   96 (201)
T 2q3h_A           18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFL   96 (201)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEE
Confidence            3579999999999999999999998888888888887555 455677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------------------hheecc
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------------------YYDISA  320 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------------------~~e~Sa  320 (385)
                      +|||++++.+|++                                                             |++|||
T Consensus        97 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  176 (201)
T 2q3h_A           97 LCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSA  176 (201)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEec
Confidence            9999999999876                                                             789999


Q ss_pred             ccCCCchHHHHHHHHHHhcC
Q psy125          321 KSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       321 k~~~~v~~~f~~l~~~i~~~  340 (385)
                      ++|.||+++|.+|++.+.+.
T Consensus       177 ~~g~gi~~l~~~l~~~~~~~  196 (201)
T 2q3h_A          177 LTQKNLKEVFDAAIVAGIQY  196 (201)
T ss_dssp             TTCTTHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999998754

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=1.7e-20  Score=158.15  Aligned_cols=116  Identities=27%  Similarity=0.407  Sum_probs=105.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.+|.+..+ ...+.+++..+.+.||||||+++|..++..+++++|++|+
T Consensus        17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~   95 (194)
T 2atx_A           17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI   95 (194)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence            468999999999999999999999999888889987665 4556677778899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125          303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK  321 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak  321 (385)
                      |||++++.||++                                                             |++|||+
T Consensus        96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  175 (194)
T 2atx_A           96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL  175 (194)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence            999999999876                                                             6789999


Q ss_pred             cCCCchHHHHHHHHHHhc
Q psy125          322 SNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       322 ~~~~v~~~f~~l~~~i~~  339 (385)
                      +|.||+++|.+|++.++.
T Consensus       176 ~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          176 TQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TCTTHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.84  E-value=4e-21  Score=158.87  Aligned_cols=155  Identities=17%  Similarity=0.168  Sum_probs=108.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYY   79 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~   79 (385)
                      +.+||+|+|++|||||||+|+|.+... ....+.++++++.....+...+..+.+|||||+......        ...++
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   81 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEI   81 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc-ceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHH
Confidence            458999999999999999999876543 223344555544333222223456889999998653321        12357


Q ss_pred             ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125           80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (385)
                      .++|++++|+|+++..++.. ..|+..+.... .+.|+++|+||+|+......     +....+.+++++||+++.|+++
T Consensus        82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-----~~~~~~~~~~~~SA~~g~gv~~  155 (172)
T 2gj8_A           82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPAKLPITVVRNKADITGETLG-----MSEVNGHALIRLSARTGEGVDV  155 (172)
T ss_dssp             HTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----EEEETTEEEEECCTTTCTTHHH
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHHhcccCCCEEEEEECccCCcchhh-----hhhccCCceEEEeCCCCCCHHH
Confidence            89999999999999887763 45666655532 47899999999998532110     1122356899999999999999


Q ss_pred             HHHHHHHHHhc
Q psy125          159 PFLWLARKLIG  169 (385)
Q Consensus       159 l~~~i~~~l~~  169 (385)
                      ++..|.+.+..
T Consensus       156 l~~~l~~~~~~  166 (172)
T 2gj8_A          156 LRNHLKQSMGF  166 (172)
T ss_dssp             HHHHHHHHC--
T ss_pred             HHHHHHHHhhh
Confidence            99999887643

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.84  E-value=1.8e-20  Score=164.78  Aligned_cols=156  Identities=13%  Similarity=0.068  Sum_probs=120.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc------hhhhh-
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL------RDGYY-   79 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~------~~~~~-   79 (385)
                      ++.++|+|+|++|||||||+|+|++..+.  ....+|+|...........+..+.+|||||...+...      ...++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~--~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQY--VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            45789999999999999999998876644  3455677877777666666789999999998776542      24454 


Q ss_pred             -ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125           80 -IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        80 -~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (385)
                       .++|++++|+|+++....   ..|...+..  .+.|+++++||+|+..... ......+....+.+++++||+++.|++
T Consensus        81 ~~~~d~ii~V~D~t~~~~~---~~~~~~l~~--~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~  155 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQS---LYLLLEILE--MEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE  155 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHH---HHHHHHHHT--TTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred             hcCCCEEEEEeCCCchhhH---HHHHHHHHh--cCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence             589999999999986543   345555543  4799999999999865432 223455667778899999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy125          158 KPFLWLARKLIG  169 (385)
Q Consensus       158 ~l~~~i~~~l~~  169 (385)
                      +++..|.+.+..
T Consensus       156 el~~~i~~~~~~  167 (258)
T 3a1s_A          156 ELKEKIVEYAQK  167 (258)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhc
Confidence            999999997653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.84  E-value=1.4e-20  Score=160.25  Aligned_cols=116  Identities=25%  Similarity=0.393  Sum_probs=105.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|++++..+.+...+.+|++.++ ...+.+++..+.+.||||||+++|..++..++++++++|+
T Consensus        27 ~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il  105 (205)
T 1gwn_A           27 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI  105 (205)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence            569999999999999999999999999888899988766 4556778888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125          303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK  321 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak  321 (385)
                      |||++++.||++                                                             |+||||+
T Consensus       106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  185 (205)
T 1gwn_A          106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  185 (205)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence            999999998875                                                             7899999


Q ss_pred             -cCCCchHHHHHHHHHHhc
Q psy125          322 -SNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       322 -~~~~v~~~f~~l~~~i~~  339 (385)
                       +|.||+++|.+|++.+++
T Consensus       186 ~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          186 QSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCHHHHHHHHHHHHhh
Confidence             689999999999998875

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.84  E-value=1.1e-20  Score=157.49  Aligned_cols=117  Identities=30%  Similarity=0.605  Sum_probs=95.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.+++|.++....+.++ +..+.+.+|||||++++..++..+++++|++|
T Consensus         7 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   86 (182)
T 1ky3_A            7 NILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCV   86 (182)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEE
Confidence            56899999999999999999999999988899999888888888776 56788999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh------------------------------------------------------hheeccccCCCch
Q psy125          302 IMFDVTSRITYKN------------------------------------------------------YYDISAKSNYNFE  327 (385)
Q Consensus       302 lv~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v~  327 (385)
                      +|||++++.+|++                                                      |++|||++|.||+
T Consensus        87 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~  166 (182)
T 1ky3_A           87 LVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVD  166 (182)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHH
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHH
Confidence            9999999998765                                                      8999999999999


Q ss_pred             HHHHHHHHHHhc
Q psy125          328 KPFLWLARKLIG  339 (385)
Q Consensus       328 ~~f~~l~~~i~~  339 (385)
                      ++|.+|++.+.+
T Consensus       167 ~l~~~l~~~~~~  178 (182)
T 1ky3_A          167 TAFEEIARSALQ  178 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998865

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.84  E-value=1.8e-20  Score=153.85  Aligned_cols=116  Identities=28%  Similarity=0.501  Sum_probs=102.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+.++ ...+..++..+.+.+|||||++++..++..+++++|++++
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEE
Confidence            458999999999999999999999988888888887655 4456678888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.+|+.                                                 |++|||++|.||+++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  161 (168)
T 1u8z_A           82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHH
Confidence            999999999876                                                 7999999999999999999


Q ss_pred             HHHHhc
Q psy125          334 ARKLIG  339 (385)
Q Consensus       334 ~~~i~~  339 (385)
                      ++.+.+
T Consensus       162 ~~~i~~  167 (168)
T 1u8z_A          162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998864

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.84  E-value=3.5e-20  Score=155.41  Aligned_cols=157  Identities=17%  Similarity=0.161  Sum_probs=115.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------chhhhhc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYYI   80 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------~~~~~~~   80 (385)
                      ++.++|+++|++|||||||+|+|++..+....  .++++.+.........+..+.+|||||+..+..      ....++.
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            57799999999999999999998876544333  334444444444444458899999999987642      3444553


Q ss_pred             --cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125           81 --QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        81 --~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (385)
                        .++++++|+|.++.   +....|+..+..  .+.|+++|+||+|+..... ......+....+.+++++||+++.|++
T Consensus        83 ~~~~~~~i~v~d~~~~---~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  157 (188)
T 2wjg_A           83 NEKPDLVVNIVDATAL---ERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE  157 (188)
T ss_dssp             HHCCSEEEEEEEGGGH---HHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             ccCCCEEEEEecchhH---HHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHH
Confidence              59999999998763   344556666554  5789999999999865432 223445666667899999999999999


Q ss_pred             HHHHHHHHHHhcC
Q psy125          158 KPFLWLARKLIGD  170 (385)
Q Consensus       158 ~l~~~i~~~l~~~  170 (385)
                      +++..+++.+...
T Consensus       158 ~l~~~i~~~~~~~  170 (188)
T 2wjg_A          158 ELKKAISIAVKDK  170 (188)
T ss_dssp             HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988664

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.84  E-value=1.2e-20  Score=154.81  Aligned_cols=116  Identities=27%  Similarity=0.480  Sum_probs=105.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            358999999999999999999999998888888886444 6667788888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.+|++                                                 |++|||++|.||+++|.+|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            999999999876                                                 7999999999999999999


Q ss_pred             HHHHhc
Q psy125          334 ARKLIG  339 (385)
Q Consensus       334 ~~~i~~  339 (385)
                      ++.+.+
T Consensus       161 ~~~~~~  166 (167)
T 1kao_A          161 VRQMNY  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhh
Confidence            998753

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.84  E-value=1.8e-20  Score=161.70  Aligned_cols=161  Identities=16%  Similarity=0.051  Sum_probs=116.2

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccc----------cccc
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEK----------FGGL   74 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~----------~~~~   74 (385)
                      ....++|+|+|.+|||||||+|+|++..+.....+..|+|......... .....+.+|||||...          +...
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            3456899999999999999999988876556677778888887766665 5668899999999532          2233


Q ss_pred             hhhhhcc---CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh----HHHHHHHHh-------
Q psy125           75 RDGYYIQ---GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRK-------  140 (385)
Q Consensus        75 ~~~~~~~---~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~----~~~~~~~~~-------  140 (385)
                      ...++..   +|++++|+|+++...... ..++..+..  .+.|+++|+||+|+......    .........       
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~  182 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTELD-RRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA  182 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHHH-HHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence            3445544   788999999987543221 234444433  57899999999998764432    111222222       


Q ss_pred             cCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          141 KNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       141 ~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      ...+++++||+++.|+++++..|.+.+..
T Consensus       183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          183 GKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             SCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            45689999999999999999999998754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=160.54  Aligned_cols=119  Identities=31%  Similarity=0.523  Sum_probs=86.1

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+.+++..+.+.||||||+++|..++..+++++|++|
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  110 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLL  110 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEE
Confidence            3569999999999999999999998888888888886544 556677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------------------hheecc
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------------------YYDISA  320 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------------------~~e~Sa  320 (385)
                      +|||++++.||++                                                             |++|||
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  190 (214)
T 2j1l_A          111 LCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSA  190 (214)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBT
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecC
Confidence            9999999999876                                                             689999


Q ss_pred             ccCCCchHHHHHHHHHHhcCC
Q psy125          321 KSNYNFEKPFLWLARKLIGDP  341 (385)
Q Consensus       321 k~~~~v~~~f~~l~~~i~~~~  341 (385)
                      ++|.||+++|.+|++.+.+.+
T Consensus       191 ~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          191 RLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHHHhh
Confidence            999999999999999998654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.83  E-value=2.7e-20  Score=157.97  Aligned_cols=119  Identities=28%  Similarity=0.405  Sum_probs=106.3

Q ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcE
Q psy125          220 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC  299 (385)
Q Consensus       220 ~~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~  299 (385)
                      +....+||+++|.+|||||+|++++..+.+...+.++.+.++.. .+.+++..+.+.||||||++++..++..+++++|+
T Consensus        21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~   99 (201)
T 2gco_A           21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDV   99 (201)
T ss_dssp             -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSE
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCE
Confidence            44567999999999999999999999999988888888776653 46678888899999999999999999999999999


Q ss_pred             EEEEEeCCChhhhhh-------------------------------------------------------------hhee
Q psy125          300 AIIMFDVTSRITYKN-------------------------------------------------------------YYDI  318 (385)
Q Consensus       300 ~ilv~d~~~~~s~~~-------------------------------------------------------------~~e~  318 (385)
                      +|+|||++++.+|++                                                             |++|
T Consensus       100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  179 (201)
T 2gco_A          100 ILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC  179 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence            999999999998876                                                             5789


Q ss_pred             ccccCCCchHHHHHHHHHHhc
Q psy125          319 SAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       319 Sak~~~~v~~~f~~l~~~i~~  339 (385)
                      ||++|.||+++|.+|++.+++
T Consensus       180 SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          180 SAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHC
T ss_pred             eCCCCCCHHHHHHHHHHHHhc
Confidence            999999999999999998764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.83  E-value=2.2e-20  Score=158.83  Aligned_cols=115  Identities=29%  Similarity=0.449  Sum_probs=101.4

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.++.+. .....+.+++..+.+.||||||++++..++..+++++|++|
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i  106 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  106 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEE-EEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecc-eeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            35699999999999999999999999998888888864 44556677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------------------hheecc
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------------------YYDISA  320 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------------------~~e~Sa  320 (385)
                      +|||++++.+|++                                                             |++|||
T Consensus       107 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA  186 (204)
T 4gzl_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeC
Confidence            9999999999977                                                             688999


Q ss_pred             ccCCCchHHHHHHHHHH
Q psy125          321 KSNYNFEKPFLWLARKL  337 (385)
Q Consensus       321 k~~~~v~~~f~~l~~~i  337 (385)
                      ++|.||+++|.+|++.+
T Consensus       187 ~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          187 LTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             TTCTTHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHh
Confidence            99999999999999865

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.83  E-value=2.5e-20  Score=156.24  Aligned_cols=117  Identities=23%  Similarity=0.459  Sum_probs=103.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+ +.....+.+++..+.+.+|||||++++..++..+++++|++++
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~   81 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   81 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence            468999999999999999999999888888888875 4455667788888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|+.                                                |++|||++|.||+++|.+|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~  161 (189)
T 4dsu_A           82 VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV  161 (189)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999877                                                89999999999999999999


Q ss_pred             HHHhcC
Q psy125          335 RKLIGD  340 (385)
Q Consensus       335 ~~i~~~  340 (385)
                      +.+...
T Consensus       162 ~~~~~~  167 (189)
T 4dsu_A          162 REIRKH  167 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.83  E-value=1.9e-20  Score=155.01  Aligned_cols=116  Identities=22%  Similarity=0.283  Sum_probs=95.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc--cCcccccccccCcEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK--FGGLRDGYYIQGQCA  300 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~--~~~~~~~~~~~~~~~  300 (385)
                      ..+||+++|.+|||||+|++++..+.+... .+++|.++....+.+++..+.+.+|||||++.  +..+...+++.+|++
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~   81 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY   81 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence            458999999999999999999987776544 45677888888888888888999999999988  667778899999999


Q ss_pred             EEEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHH
Q psy125          301 IIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       301 ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      ++|||++++.||+.                                                 |++|||++|.||+++|.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  161 (175)
T 2nzj_A           82 VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE  161 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHH
Confidence            99999999999887                                                 89999999999999999


Q ss_pred             HHHHHHhc
Q psy125          332 WLARKLIG  339 (385)
Q Consensus       332 ~l~~~i~~  339 (385)
                      +|++.+..
T Consensus       162 ~l~~~~~~  169 (175)
T 2nzj_A          162 GVVRQLRL  169 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.83  E-value=1.5e-20  Score=153.43  Aligned_cols=151  Identities=18%  Similarity=0.133  Sum_probs=101.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc-------ccchhhhhccC
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-------GGLRDGYYIQG   82 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~-------~~~~~~~~~~~   82 (385)
                      +||+++|++|||||||+++++++.+. ...+..+.+.+.........+..+.+|||||....       ......++..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSA-VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA   80 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCee-eccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence            59999999999999999998876532 23344455544443333334458899999998763       23345577899


Q ss_pred             cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHH
Q psy125           83 QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~  161 (385)
                      |++++|+|+++..+..  ..++..+... .+.|+++|+||+|+.....  ...++. ..+. +++++||+++.|+++++.
T Consensus        81 ~~~i~v~d~~~~~~~~--~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~  154 (161)
T 2dyk_A           81 EVVLFAVDGRAELTQA--DYEVAEYLRR-KGKPVILVATKVDDPKHEL--YLGPLY-GLGFGDPIPTSSEHARGLEELLE  154 (161)
T ss_dssp             SEEEEEEESSSCCCHH--HHHHHHHHHH-HTCCEEEEEECCCSGGGGG--GCGGGG-GGSSCSCEECBTTTTBSHHHHHH
T ss_pred             CEEEEEEECCCcccHh--HHHHHHHHHh-cCCCEEEEEECcccccchH--hHHHHH-hCCCCCeEEEecccCCChHHHHH
Confidence            9999999999864332  2233232222 4789999999999976532  222233 3344 899999999999999999


Q ss_pred             HHHHHH
Q psy125          162 WLARKL  167 (385)
Q Consensus       162 ~i~~~l  167 (385)
                      +|++.+
T Consensus       155 ~l~~~l  160 (161)
T 2dyk_A          155 AIWERL  160 (161)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=5.1e-20  Score=156.99  Aligned_cols=117  Identities=29%  Similarity=0.410  Sum_probs=99.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+.++.. .+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence            46899999999999999999999999988888888766644 36678888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125          303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK  321 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak  321 (385)
                      |||++++.+|++                                                             |++|||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (207)
T 2fv8_A          103 CFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAK  182 (207)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCC
Confidence            999999998866                                                             4789999


Q ss_pred             cCCCchHHHHHHHHHHhcC
Q psy125          322 SNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       322 ~~~~v~~~f~~l~~~i~~~  340 (385)
                      +|.||+++|.+|++.++..
T Consensus       183 ~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          183 TKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.83  E-value=2.8e-20  Score=156.64  Aligned_cols=118  Identities=27%  Similarity=0.557  Sum_probs=107.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEE-EEEEEeCCe---------eEEEEEeeCCCccccCccccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH-PLVFHTNRG---------AIRFNVWDTAGQEKFGGLRDG  292 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~l~i~Dt~G~~~~~~~~~~  292 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++++.++. ...+..++.         .+.+.+|||||++++..++..
T Consensus        10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~   89 (195)
T 3bc1_A           10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTA   89 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHH
T ss_pred             eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHH
Confidence            4689999999999999999999999988888999988887 666666665         788999999999999999999


Q ss_pred             ccccCcEEEEEEeCCChhhhhh-------------------------------------------------hheeccccC
Q psy125          293 YYIQGQCAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       293 ~~~~~~~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~  323 (385)
                      +++++|++|+|||++++.+|++                                                 |++|||++|
T Consensus        90 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  169 (195)
T 3bc1_A           90 FFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANG  169 (195)
T ss_dssp             TTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTC
T ss_pred             HHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCC
Confidence            9999999999999999999876                                                 899999999


Q ss_pred             CCchHHHHHHHHHHhcC
Q psy125          324 YNFEKPFLWLARKLIGD  340 (385)
Q Consensus       324 ~~v~~~f~~l~~~i~~~  340 (385)
                      .||+++|.+|++.+.+.
T Consensus       170 ~~v~~l~~~l~~~~~~~  186 (195)
T 3bc1_A          170 TNISHAIEMLLDLIMKR  186 (195)
T ss_dssp             TTHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHH
Confidence            99999999999988653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.83  E-value=3.8e-20  Score=157.30  Aligned_cols=118  Identities=32%  Similarity=0.600  Sum_probs=107.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCee------------------------------
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA------------------------------  272 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------  272 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..                              
T Consensus         6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (208)
T 3clv_A            6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN   85 (208)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence            46899999999999999999999999988899999988888888777655                              


Q ss_pred             -------EEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh-------------------------------
Q psy125          273 -------IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN-------------------------------  314 (385)
Q Consensus       273 -------~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~-------------------------------  314 (385)
                             +.+.||||||++++..++..+++.+|++|+|||++++.+|++                               
T Consensus        86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~~~~~~~  165 (208)
T 3clv_A           86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDKNKFQVD  165 (208)
T ss_dssp             CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTCC-CCSC
T ss_pred             ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCcccccCC
Confidence                   889999999999999999999999999999999999999877                               


Q ss_pred             --------------hheeccccCCCchHHHHHHHHHHhcC
Q psy125          315 --------------YYDISAKSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       315 --------------~~e~Sak~~~~v~~~f~~l~~~i~~~  340 (385)
                                    |++|||++|.||+++|.+|++.+.++
T Consensus       166 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~  205 (208)
T 3clv_A          166 ILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN  205 (208)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence                          79999999999999999999988653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.83  E-value=3.3e-20  Score=158.80  Aligned_cols=118  Identities=30%  Similarity=0.599  Sum_probs=109.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..++|+++|.+|||||+|+++++.+.+...+.++++.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   98 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIIL   98 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999998888888999888888888888888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          303 MFDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       303 v~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |||++++.+|++                                               |++|||++|.||+++|.+|++
T Consensus        99 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  178 (213)
T 3cph_A           99 VYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  178 (213)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999998876                                               799999999999999999999


Q ss_pred             HHhcC
Q psy125          336 KLIGD  340 (385)
Q Consensus       336 ~i~~~  340 (385)
                      .+.+.
T Consensus       179 ~~~~~  183 (213)
T 3cph_A          179 LIQEK  183 (213)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.83  E-value=7.3e-21  Score=169.00  Aligned_cols=157  Identities=15%  Similarity=0.139  Sum_probs=117.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc----------hh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL----------RD   76 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~----------~~   76 (385)
                      |+.++|+++|.+|||||||+|+|++..+  .+...+|+|.+.........+..+.+|||||+..+...          ..
T Consensus         1 M~~~~I~lvG~~n~GKSTLin~l~g~~~--~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHTTCE--EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHH
Confidence            3679999999999999999999877653  44566788887777666666678899999998765521          22


Q ss_pred             hhh--ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCC
Q psy125           77 GYY--IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSN  153 (385)
Q Consensus        77 ~~~--~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~  153 (385)
                      .++  .++|++++|+|+++.....   .+...+..  .+.|+++|+||+|+..... ......+....+.+++++||+++
T Consensus        79 ~~~~~~~~d~ii~VvD~~~~~~~~---~~~~~l~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           79 HYILSGDADLLINVVDASNLERNL---YLTLQLLE--LGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHHHTCCSEEEEEEEGGGHHHHH---HHHHHHHH--HTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGG
T ss_pred             HHHhhcCCCEEEEEecCCChHHHH---HHHHHHHh--cCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            232  6899999999999865443   33334433  2789999999999865432 12234456667789999999999


Q ss_pred             CChHHHHHHHHHHHhcC
Q psy125          154 YNFEKPFLWLARKLIGD  170 (385)
Q Consensus       154 ~gi~~l~~~i~~~l~~~  170 (385)
                      .|+++++..|.+.+...
T Consensus       154 ~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          154 RGIEALKLAIDRYKANE  170 (274)
T ss_dssp             HHHHHHHHHHHTCCCCC
T ss_pred             CCHHHHHHHHHHHHhcC
Confidence            99999999998876543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.83  E-value=3.1e-20  Score=157.16  Aligned_cols=116  Identities=22%  Similarity=0.429  Sum_probs=99.5

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCcccc-ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA  300 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~  300 (385)
                      ....||+++|.+|||||+|+++++.+.+.. .+.+|+|.+....    +...+.+.||||||++++..++..|++++|++
T Consensus        15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   90 (199)
T 4bas_A           15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAV   90 (199)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTTCSEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEE
Confidence            457899999999999999999999999888 7899988554432    34567899999999999999999999999999


Q ss_pred             EEEEeCCChhhhhh------------------------------------------------------------hheecc
Q psy125          301 IIMFDVTSRITYKN------------------------------------------------------------YYDISA  320 (385)
Q Consensus       301 ilv~d~~~~~s~~~------------------------------------------------------------~~e~Sa  320 (385)
                      |+|||++++.||++                                                            |++|||
T Consensus        91 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  170 (199)
T 4bas_A           91 IFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNG  170 (199)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBT
T ss_pred             EEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeC
Confidence            99999999988754                                                            479999


Q ss_pred             ccCCCchHHHHHHHHHHhcCC
Q psy125          321 KSNYNFEKPFLWLARKLIGDP  341 (385)
Q Consensus       321 k~~~~v~~~f~~l~~~i~~~~  341 (385)
                      ++|.||+++|.+|++.+....
T Consensus       171 ~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          171 LKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             TTTBTHHHHHHHHHHHHHHHC
T ss_pred             CCccCHHHHHHHHHHHHHHHh
Confidence            999999999999999987654

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.83  E-value=1.3e-20  Score=158.15  Aligned_cols=115  Identities=25%  Similarity=0.498  Sum_probs=101.7

Q ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125          221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA  300 (385)
Q Consensus       221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~  300 (385)
                      ....+||+++|.+|||||+|+++++.+.+...+.+|++.++...    ....+.+.||||||++++..++..+++++|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            34579999999999999999999999999888889988776542    23467889999999999999999999999999


Q ss_pred             EEEEeCCChhhhhh----------------------------------------------------hheeccccCCCchH
Q psy125          301 IIMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEK  328 (385)
Q Consensus       301 ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~  328 (385)
                      |+|||++++.+|+.                                                    |++|||++|.||++
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~  174 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  174 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHH
Confidence            99999999999876                                                    68999999999999


Q ss_pred             HHHHHHHHHhc
Q psy125          329 PFLWLARKLIG  339 (385)
Q Consensus       329 ~f~~l~~~i~~  339 (385)
                      +|.+|++.+..
T Consensus       175 l~~~l~~~~~~  185 (188)
T 1zd9_A          175 TLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHTCC-
T ss_pred             HHHHHHHHHHh
Confidence            99999997754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.83  E-value=3.6e-20  Score=157.62  Aligned_cols=118  Identities=27%  Similarity=0.500  Sum_probs=106.9

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+.+++..+.+.||||||++++..++..+++++|++|
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   90 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   90 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEE
Confidence            4579999999999999999999999988888889887665 455677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHH
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      +|||++++.+|+.                                                 |++|||++|.||+++|.+
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  170 (206)
T 2bov_A           91 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  170 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999876                                                 799999999999999999


Q ss_pred             HHHHHhcC
Q psy125          333 LARKLIGD  340 (385)
Q Consensus       333 l~~~i~~~  340 (385)
                      |++.+...
T Consensus       171 l~~~i~~~  178 (206)
T 2bov_A          171 LMREIRAR  178 (206)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99998753

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.83  E-value=1.7e-21  Score=165.07  Aligned_cols=118  Identities=31%  Similarity=0.623  Sum_probs=104.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+.++....+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus        32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~  111 (199)
T 3l0i_B           32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIV  111 (199)
T ss_dssp             EEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEE
Confidence            46999999999999999999999988888888999888888888889888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|+.                                                |++|||++|.||+++|.+|+
T Consensus       112 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~  191 (199)
T 3l0i_B          112 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMA  191 (199)
T ss_dssp             CC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999877                                                89999999999999999999


Q ss_pred             HHHhcC
Q psy125          335 RKLIGD  340 (385)
Q Consensus       335 ~~i~~~  340 (385)
                      +.+.+.
T Consensus       192 ~~l~~~  197 (199)
T 3l0i_B          192 AEIKKR  197 (199)
T ss_dssp             TTTTTT
T ss_pred             HHHHHh
Confidence            887654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.83  E-value=1.8e-19  Score=151.83  Aligned_cols=155  Identities=14%  Similarity=0.129  Sum_probs=110.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCC----------ccccccchh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG----------QEKFGGLRD   76 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g----------~~~~~~~~~   76 (385)
                      ...+||+++|++|||||||+|+|+++. ...+.++.+.++.........   .+.+|||||          .+.+.....
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   96 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVE   96 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHH
Confidence            456899999999999999999988766 556677888777766554433   477999999          333444455


Q ss_pred             hhhccC---cEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh----HHHHHHHHh-cCCeEEEE
Q psy125           77 GYYIQG---QCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRK-KNLQYYDI  148 (385)
Q Consensus        77 ~~~~~~---d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~----~~~~~~~~~-~~~~~~~~  148 (385)
                      .++..+   +++++|+|+++....... .+...+..  .+.|+++|+||+|+......    .....+... ...+++++
T Consensus        97 ~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (195)
T 3pqc_A           97 DYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKS--LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPT  173 (195)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEEC
T ss_pred             HHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHH--cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEE
Confidence            555555   899999999876433221 12222222  37899999999998654322    223334443 34689999


Q ss_pred             cCCCCCChHHHHHHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      ||+++.|+++++.+|.+.+.
T Consensus       174 Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          174 SSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             CTTTCTTHHHHHHHHHHHHC
T ss_pred             ecCCCCCHHHHHHHHHHHhh
Confidence            99999999999999998874

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.83  E-value=1.8e-20  Score=160.96  Aligned_cols=119  Identities=31%  Similarity=0.551  Sum_probs=108.0

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCe----------eEEEEEeeCCCccccCcccc
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG----------AIRFNVWDTAGQEKFGGLRD  291 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~i~Dt~G~~~~~~~~~  291 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.++++.++....+.+++.          .+.+.||||||+++|..++.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            35699999999999999999999998898888899988888777777665          78899999999999999999


Q ss_pred             cccccCcEEEEEEeCCChhhhhh-------------------------------------------------hheecccc
Q psy125          292 GYYIQGQCAIIMFDVTSRITYKN-------------------------------------------------YYDISAKS  322 (385)
Q Consensus       292 ~~~~~~~~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~  322 (385)
                      .+++++|++|+|||++++.+|++                                                 |++|||++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  182 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT  182 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence            99999999999999999999876                                                 89999999


Q ss_pred             CCCchHHHHHHHHHHhcC
Q psy125          323 NYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       323 ~~~v~~~f~~l~~~i~~~  340 (385)
                      |.||+++|.+|++.+.+.
T Consensus       183 g~gi~~l~~~l~~~i~~~  200 (217)
T 2f7s_A          183 GQNVEKAVETLLDLIMKR  200 (217)
T ss_dssp             TBTHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=3e-20  Score=157.03  Aligned_cols=116  Identities=28%  Similarity=0.419  Sum_probs=104.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+.++ ...+.+++..+.+.+|||||+++ ..++..+++.+|++|+
T Consensus        27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil  104 (196)
T 2atv_A           27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL  104 (196)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence            468999999999999999999999999888899987655 45567788889999999999988 7788889999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCC-CchHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNY-NFEKPFLW  332 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~-~v~~~f~~  332 (385)
                      |||++++.+|++                                                 |++|||++|. ||+++|.+
T Consensus       105 v~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~  184 (196)
T 2atv_A          105 VYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE  184 (196)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHH
Confidence            999999999876                                                 8999999999 99999999


Q ss_pred             HHHHHhcC
Q psy125          333 LARKLIGD  340 (385)
Q Consensus       333 l~~~i~~~  340 (385)
                      |++.+.+.
T Consensus       185 l~~~i~~~  192 (196)
T 2atv_A          185 LCREVRRR  192 (196)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhh
Confidence            99998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.82  E-value=1.4e-20  Score=157.06  Aligned_cols=113  Identities=20%  Similarity=0.419  Sum_probs=95.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|++++..+.+ ..+.+|+|.+..  .+..+  .+.+.+|||||+++++.++..|++++|++++
T Consensus        15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~--~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~   89 (181)
T 1fzq_A           15 QEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIK--SVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIY   89 (181)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEE--EEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence            568999999999999999999886644 567788885543  33444  5678999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||++++.+|++                                                    |++|||++|.||+++|
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  169 (181)
T 1fzq_A           90 VIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGM  169 (181)
T ss_dssp             EEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHH
Confidence            999999999876                                                    6899999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      .+|++.+.+.
T Consensus       170 ~~l~~~~~~~  179 (181)
T 1fzq_A          170 NWVCKNVNAK  179 (181)
T ss_dssp             HHHHHTC---
T ss_pred             HHHHHHHHhc
Confidence            9999987543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.82  E-value=4.7e-20  Score=154.25  Aligned_cols=118  Identities=27%  Similarity=0.500  Sum_probs=105.8

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+..++..+.+.||||||++++..++..+++.+|++|
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   94 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   94 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEE
Confidence            4579999999999999999999999988888888887655 445667888889999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHH
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      +|||++++.+|+.                                                 |++|||++|.||+++|.+
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  174 (187)
T 2a9k_A           95 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFD  174 (187)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            9999999999876                                                 799999999999999999


Q ss_pred             HHHHHhcC
Q psy125          333 LARKLIGD  340 (385)
Q Consensus       333 l~~~i~~~  340 (385)
                      |++.+...
T Consensus       175 l~~~i~~~  182 (187)
T 2a9k_A          175 LMREIRAR  182 (187)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.82  E-value=1.4e-20  Score=156.97  Aligned_cols=116  Identities=32%  Similarity=0.492  Sum_probs=88.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|++++..+.+...+.+|++..+. ..+..++..+.+.+|||||++++..++..+++++|++|+
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   85 (182)
T 3bwd_D            7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL   85 (182)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence            4689999999999999999999998888888888775543 234456667788899999999999999999999999999


Q ss_pred             EEeCCChhhhhh-----------------------------------------------------------hheeccccC
Q psy125          303 MFDVTSRITYKN-----------------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       303 v~d~~~~~s~~~-----------------------------------------------------------~~e~Sak~~  323 (385)
                      |||++++.||++                                                           |++|||++|
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  165 (182)
T 3bwd_D           86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQ  165 (182)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCC
Confidence            999999999876                                                           789999999


Q ss_pred             CCchHHHHHHHHHHhc
Q psy125          324 YNFEKPFLWLARKLIG  339 (385)
Q Consensus       324 ~~v~~~f~~l~~~i~~  339 (385)
                      .||+++|.+|++.++.
T Consensus       166 ~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          166 ENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TTHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999998864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.82  E-value=1.3e-20  Score=154.33  Aligned_cols=111  Identities=27%  Similarity=0.428  Sum_probs=93.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+|+++++.+.+.. +.+|++...  ..+.  ...+.+.+|||||++++..++..+++++|++|+||
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE--EEEE--CSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE--EEEE--ECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999998877764 567776332  2333  34577999999999999999999999999999999


Q ss_pred             eCCChhhhhh----------------------------------------------------hheeccccCCCchHHHHH
Q psy125          305 DVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       305 d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |++++.||++                                                    |++|||++|.||+++|.+
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence            9999999887                                                    689999999999999999


Q ss_pred             HHHHHhcC
Q psy125          333 LARKLIGD  340 (385)
Q Consensus       333 l~~~i~~~  340 (385)
                      |++.+.++
T Consensus       156 l~~~i~~~  163 (164)
T 1r8s_A          156 LSNQLRNQ  163 (164)
T ss_dssp             HHHHC---
T ss_pred             HHHHHhhc
Confidence            99988543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.82  E-value=1.1e-20  Score=159.63  Aligned_cols=117  Identities=19%  Similarity=0.215  Sum_probs=100.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCcccccc-----------ccceeeEEEEEEE-EeCCeeEEEEEeeCCCccccCccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY-----------VATLGVEVHPLVF-HTNRGAIRFNVWDTAGQEKFGGLR  290 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~l~i~Dt~G~~~~~~~~  290 (385)
                      ..+||+++|.+|||||+|+ +++.+.+...+           .+|+|.++....+ .+++..+.+.||||||+++|..++
T Consensus        13 ~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~   91 (198)
T 3t1o_A           13 INFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASR   91 (198)
T ss_dssp             EEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHH
T ss_pred             cccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHHH
Confidence            4699999999999999999 55767776664           4577777666555 567788899999999999999999


Q ss_pred             ccccccCcEEEEEEeCC------Chhhhhh----------------------------------------------hhee
Q psy125          291 DGYYIQGQCAIIMFDVT------SRITYKN----------------------------------------------YYDI  318 (385)
Q Consensus       291 ~~~~~~~~~~ilv~d~~------~~~s~~~----------------------------------------------~~e~  318 (385)
                      ..+++++|++|+|||++      ++.+|++                                              |++|
T Consensus        92 ~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~  171 (198)
T 3t1o_A           92 KLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEA  171 (198)
T ss_dssp             HHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEEC
T ss_pred             HHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEE
Confidence            99999999999999999      4555543                                              7999


Q ss_pred             ccccCCCchHHHHHHHHHHhcC
Q psy125          319 SAKSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       319 Sak~~~~v~~~f~~l~~~i~~~  340 (385)
                      ||++|.||+++|.+|++.+.++
T Consensus       172 Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          172 VATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             BGGGTBTHHHHHHHHHHHHHHH
T ss_pred             ecCCCcCHHHHHHHHHHHHHHH
Confidence            9999999999999999998764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.82  E-value=3.4e-20  Score=163.92  Aligned_cols=152  Identities=15%  Similarity=0.140  Sum_probs=116.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------chhhhhc--
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYYI--   80 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------~~~~~~~--   80 (385)
                      .++|+|+|++|||||||+|+|.+....  +...+|+|++.....+.. .+.+.+|||||+..+..      +...++.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~--v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQR--VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCC--CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            479999999999999999998776532  345568888877777776 77899999999987652      3455554  


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      ++|++++|+|+++....   ..|...+..  .+.|+++++||+|+..... ......+....+.+++++||+++.|++++
T Consensus        80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el  154 (272)
T 3b1v_A           80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV  154 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence            69999999999886543   345555544  5889999999999864322 22334566667889999999999999999


Q ss_pred             HHHHHHHHh
Q psy125          160 FLWLARKLI  168 (385)
Q Consensus       160 ~~~i~~~l~  168 (385)
                      +..|++.+.
T Consensus       155 ~~~i~~~~~  163 (272)
T 3b1v_A          155 VKKAAHTTT  163 (272)
T ss_dssp             HHHHHHSCT
T ss_pred             HHHHHHHHh
Confidence            999988653

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.82  E-value=8.3e-20  Score=150.49  Aligned_cols=113  Identities=24%  Similarity=0.439  Sum_probs=97.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|++++..+.+. .+.+|++.+...  +..+  .+.+.+|||||++++..++..+++++|++|+
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~--~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   80 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVET--VTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   80 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE--EEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEE--EEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEE
Confidence            4689999999999999999999888775 466777755433  3333  5678999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||++++.+|++                                                    |++|||++|.||+++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (171)
T 1upt_A           81 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  160 (171)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHH
Confidence            999999988876                                                    6899999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      .+|++.+.++
T Consensus       161 ~~l~~~i~~~  170 (171)
T 1upt_A          161 EWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhhc
Confidence            9999988653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.82  E-value=6.5e-20  Score=153.50  Aligned_cols=113  Identities=19%  Similarity=0.383  Sum_probs=99.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+++++++.+. ...+.+|++.+...  +..+  .+.+.+|||||++++..++..+++++|++|+
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~--~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~   91 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKT--LEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   91 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEE--EEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            46899999999999999999999777 77788888855443  3333  5678999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||++++.||++                                                    |++|||++|.||+++|
T Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  171 (186)
T 1ksh_A           92 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI  171 (186)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHH
Confidence            999999999876                                                    6899999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      .+|++.+.++
T Consensus       172 ~~l~~~i~~~  181 (186)
T 1ksh_A          172 DWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhc
Confidence            9999998765

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=3.2e-20  Score=155.62  Aligned_cols=113  Identities=25%  Similarity=0.384  Sum_probs=94.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+. .+.+|+|.+....  ..+  .+.+.+|||||++++..++..+++++|++|+
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~--~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~   89 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEI--VIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVIV   89 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEE--EET--TEEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEE--EEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence            5689999999999999999999988877 7778887554433  333  4778999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||++++.||++                                                    |++|||++|.||+++|
T Consensus        90 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  169 (187)
T 1zj6_A           90 VVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL  169 (187)
T ss_dssp             EEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHH
Confidence            999999998877                                                    6899999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      .+|++.+...
T Consensus       170 ~~l~~~~~~~  179 (187)
T 1zj6_A          170 EWMMSRLKIR  179 (187)
T ss_dssp             HHHHHHHCC-
T ss_pred             HHHHHHHHHH
Confidence            9999988554

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=6e-20  Score=151.38  Aligned_cols=116  Identities=24%  Similarity=0.442  Sum_probs=103.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.+...+.++.+.++. ..+..++..+.+.+|||||++++..++..+++.+|++|+
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            3589999999999999999999988888888888876654 445667778899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHH
Q psy125          303 MFDVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       303 v~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |||++++.+|++                                                  |++|||++|.||+++|.+
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            999999999876                                                  799999999999999999


Q ss_pred             HHHHHhc
Q psy125          333 LARKLIG  339 (385)
Q Consensus       333 l~~~i~~  339 (385)
                      |++.+..
T Consensus       161 l~~~~~~  167 (172)
T 2erx_A          161 LLNLEKR  167 (172)
T ss_dssp             HHHTCCS
T ss_pred             HHHHHhh
Confidence            9986643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.82  E-value=2.5e-20  Score=163.62  Aligned_cols=150  Identities=17%  Similarity=0.125  Sum_probs=113.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc----------chhhhh
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----------LRDGYY   79 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----------~~~~~~   79 (385)
                      .+|+|+|.+|||||||+|+|.+...  .+...+|+|.+........++..+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~--~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQ--RVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSE--EEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC--CccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            4899999999999999999877653  3445667777776666655556899999999876653          344556


Q ss_pred             --ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCCh
Q psy125           80 --IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNF  156 (385)
Q Consensus        80 --~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (385)
                        .++|++++|+|+++......   +...+..  .+.|+++|+||+|+..... ......+....+.+++++||+++.|+
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~---l~~~l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi  154 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLY---LTSQLFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI  154 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHH---HHHHHTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred             hhCCCCEEEEEeeCCCchhHHH---HHHHHHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence              88999999999998654432   3333332  4789999999999865432 12233456667889999999999999


Q ss_pred             HHHHHHHHHH
Q psy125          157 EKPFLWLARK  166 (385)
Q Consensus       157 ~~l~~~i~~~  166 (385)
                      ++++..|.+.
T Consensus       155 ~el~~~i~~~  164 (256)
T 3iby_A          155 PALQQSLLHC  164 (256)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhh
Confidence            9999999887

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.82  E-value=9.2e-20  Score=161.92  Aligned_cols=158  Identities=20%  Similarity=0.115  Sum_probs=118.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------chhhhh-
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYY-   79 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------~~~~~~-   79 (385)
                      |+.++|+|+|++|||||||+|+|++..+  .....+|+|.+.........+..+.+|||||...+..      ....++ 
T Consensus         1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   78 (271)
T 3k53_A            1 MVLKTVALVGNPNVGKTTIFNALTGLRQ--HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFIL   78 (271)
T ss_dssp             CCCEEEEEEECSSSSHHHHHHHHHTTCE--EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence            4678999999999999999999877655  3445566666666655555566799999999887655      344455 


Q ss_pred             -ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChH
Q psy125           80 -IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        80 -~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~  157 (385)
                       .++|++++|+|+++...   ...+...+... ...|+++++||+|+..... ......+....+.+++++|++++.|++
T Consensus        79 ~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           79 DGNADVIVDIVDSTCLMR---NLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             TTCCSEEEEEEEGGGHHH---HHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             ccCCcEEEEEecCCcchh---hHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHH
Confidence             68999999999988632   22344444432 2399999999999865332 222445666778899999999999999


Q ss_pred             HHHHHHHHHHhcC
Q psy125          158 KPFLWLARKLIGD  170 (385)
Q Consensus       158 ~l~~~i~~~l~~~  170 (385)
                      +++..+.+.+...
T Consensus       155 ~l~~~i~~~~~~~  167 (271)
T 3k53_A          155 ELKRMIALMAEGK  167 (271)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999987654

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.82  E-value=5.6e-20  Score=154.82  Aligned_cols=114  Identities=25%  Similarity=0.397  Sum_probs=92.5

Q ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125          221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA  300 (385)
Q Consensus       221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~  300 (385)
                      ....+||+++|.+|||||+|+++++.+.+. .+.+|++...  ..+..  ..+.+.+|||||++++..++..+++++|++
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i  100 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGL  100 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEEE--EEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCceeE--EEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            346799999999999999999999888775 4567776333  33333  457899999999999999999999999999


Q ss_pred             EEEEeCCChhhhhh----------------------------------------------------hheeccccCCCchH
Q psy125          301 IIMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEK  328 (385)
Q Consensus       301 ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~  328 (385)
                      |+|||++++.+|++                                                    |++|||++|.||++
T Consensus       101 ilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~  180 (192)
T 2b6h_A          101 IFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYD  180 (192)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHH
Confidence            99999999999886                                                    68999999999999


Q ss_pred             HHHHHHHHHhc
Q psy125          329 PFLWLARKLIG  339 (385)
Q Consensus       329 ~f~~l~~~i~~  339 (385)
                      +|.+|++.+.+
T Consensus       181 l~~~l~~~i~~  191 (192)
T 2b6h_A          181 GLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHhc
Confidence            99999998753

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.81  E-value=3.3e-20  Score=154.68  Aligned_cols=110  Identities=25%  Similarity=0.400  Sum_probs=95.9

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+ ..+.+|+|.+....  .++  ++.+.+|||||++++..++..+++++|++|
T Consensus        19 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~--~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   93 (181)
T 2h17_A           19 SQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEI--VIN--NTRFLMWDIGGQESLRSSWNTYYTNTEFVI   93 (181)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEE--EET--TEEEEEEEESSSGGGTCGGGGGGTTCCEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEE--EEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3569999999999999999999998887 67788888665433  333  477999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125          302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      +|||++++.+|++                                                    |++|||++|.||+++
T Consensus        94 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  173 (181)
T 2h17_A           94 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG  173 (181)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence            9999999999876                                                    689999999999999


Q ss_pred             HHHHHHH
Q psy125          330 FLWLARK  336 (385)
Q Consensus       330 f~~l~~~  336 (385)
                      |.+|++.
T Consensus       174 ~~~l~~~  180 (181)
T 2h17_A          174 LEWMMSR  180 (181)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhh
Confidence            9999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=8.6e-20  Score=154.42  Aligned_cols=118  Identities=26%  Similarity=0.476  Sum_probs=105.2

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...++|+++|.+|||||+|+++++.+.+...+.++.+.++. ..+..++..+.+.||||||++++..++..+++++|++|
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            34689999999999999999999999888888888876654 44567788889999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHH
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      +|||++++.+|++                                                 |++|||++|.||+++|.+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE  164 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence            9999999999876                                                 799999999999999999


Q ss_pred             HHHHHhcC
Q psy125          333 LARKLIGD  340 (385)
Q Consensus       333 l~~~i~~~  340 (385)
                      |++.+...
T Consensus       165 l~~~~~~~  172 (199)
T 2gf0_A          165 LLTLETRR  172 (199)
T ss_dssp             HHHHCSSS
T ss_pred             HHHHHhhh
Confidence            99987543

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.81  E-value=2e-20  Score=166.96  Aligned_cols=152  Identities=16%  Similarity=0.160  Sum_probs=109.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc---chhhhhccCc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---LRDGYYIQGQ   83 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~---~~~~~~~~~d   83 (385)
                      ||+++|+.|||||||++++..+ +.+.    ..++.|+....    .. ..+.+.+|||+|+++++.   ....++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~-~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~   74 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHN-MQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVG   74 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSC-CCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred             CEEEECCCCCCHHHHHHHHHcC-CCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCC
Confidence            6899999999999999986544 4433    45666665543    22 358899999999999864   3578999999


Q ss_pred             EEEEEEeCCChhhhhcHHHH---HHHHHHhcCCCCEEEEEeCCCCcchhh---------hHHHHHHHHh----cCCeEEE
Q psy125           84 CAIIMFDVTSRITYKNVPNW---HRDLVRVCENIPIVLCGNKVDIKDRKV---------KAKSIVFHRK----KNLQYYD  147 (385)
Q Consensus        84 ~illV~d~~~~~~~~~~~~~---~~~l~~~~~~~~~ilv~nK~Dl~~~~~---------~~~~~~~~~~----~~~~~~~  147 (385)
                      ++|+|||+++. .+.....|   +..+....++.|+++++||+|+.....         ..+..+++..    .+..+++
T Consensus        75 ~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e  153 (331)
T 3r7w_B           75 ALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL  153 (331)
T ss_dssp             EEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred             EEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence            99999999997 33333333   444444457899999999999975321         1122234443    3568999


Q ss_pred             EcCCCCCChHHHHHHHHHHHhcC
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~  170 (385)
                      +||++ .++.+.|..+++.+..+
T Consensus       154 TSAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          154 TSIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             CCSSS-SHHHHHHHHHHTTSSTT
T ss_pred             eccCC-CcHHHHHHHHHHHHHhh
Confidence            99998 58999999998876543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.81  E-value=4.8e-20  Score=179.25  Aligned_cols=164  Identities=21%  Similarity=0.295  Sum_probs=119.8

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEE--------EeCCeeEEEEEEeCCCccccccchhh
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF--------HTNRGAIRFNVWDTAGQEKFGGLRDG   77 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~--------~~~~~~~~~~i~Dt~g~~~~~~~~~~   77 (385)
                      ..+.+||+|+|.+|||||||+|++.++.+...+.++.|.+......        ......+.+.+|||||++.+......
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~  117 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQF  117 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHH
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHH
Confidence            3567999999999999999999999888887788888877665421        11234689999999999998888888


Q ss_pred             hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCC
Q psy125           78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYN  155 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (385)
                      ++.++|++|+|+|+++.   +....|+..+.....+.|+++|+||+|+.....  ......+....+.+++++||+++.|
T Consensus       118 ~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~g  194 (535)
T 3dpu_A          118 FMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDG  194 (535)
T ss_dssp             HHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----
T ss_pred             HccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccC
Confidence            99999999999999765   455678888877667899999999999865433  3344556666677899999999999


Q ss_pred             hHHHHHHHHHHHhcCCC
Q psy125          156 FEKPFLWLARKLIGDPN  172 (385)
Q Consensus       156 i~~l~~~i~~~l~~~~~  172 (385)
                      +++++..|++.+...+.
T Consensus       195 i~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          195 VESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             CTTHHHHHHHHHTCTTS
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            99999999999876544

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.81  E-value=5.2e-20  Score=154.49  Aligned_cols=154  Identities=16%  Similarity=0.186  Sum_probs=107.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCC-----------ccccccchhhh
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG-----------QEKFGGLRDGY   78 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g-----------~~~~~~~~~~~   78 (385)
                      +||+++|++|||||||+|+|+++.+.....+  ++++........    .+.+|||||           ++.+......+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCC--CccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6999999999999999999988776554433  555554444433    688999999           34444555556


Q ss_pred             hcc-CcEEEEEEeCCChhhhhcH-HHHHHH--------HHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---
Q psy125           79 YIQ-GQCAIIMFDVTSRITYKNV-PNWHRD--------LVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---  143 (385)
Q Consensus        79 ~~~-~d~illV~d~~~~~~~~~~-~~~~~~--------l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---  143 (385)
                      +.+ ++++++|+++.+..++..+ ..|...        +..  ...+.|+++|+||+|+.... ......+....+.   
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~  154 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLS  154 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGG
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhh
Confidence            665 6666666666666666554 344331        111  12579999999999987654 2233444444444   


Q ss_pred             ----eEEEEcCCCCCChHHHHHHHHHHHhcC
Q psy125          144 ----QYYDISAKSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       144 ----~~~~~Sa~~~~gi~~l~~~i~~~l~~~  170 (385)
                          .++++||+++.|+++++..|++.+...
T Consensus       155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          155 EIDKVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             ccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence                479999999999999999999987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.81  E-value=2e-19  Score=147.15  Aligned_cols=115  Identities=25%  Similarity=0.462  Sum_probs=103.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+++++++.+.+...+.++.+..+ ...+..++..+.+.+|||||++++..++..+++.+|++++|
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence            57999999999999999999998888888888876544 55667788888999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.+|++                                                |++|||++|.||+++|.+|++
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  161 (166)
T 2ce2_X           82 FAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR  161 (166)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999876                                                899999999999999999999


Q ss_pred             HHhc
Q psy125          336 KLIG  339 (385)
Q Consensus       336 ~i~~  339 (385)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T 2ce2_X          162 EIRQ  165 (166)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8854

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.81  E-value=2.4e-19  Score=150.52  Aligned_cols=118  Identities=25%  Similarity=0.466  Sum_probs=95.3

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||||+++++.+.+...+.++.+..+ ...+..++..+.+.||||||++++..++..+++.+++++
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   97 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   97 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence            4569999999999999999999998888888888876544 456677888889999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          302 IMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       302 lv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      +|||++++.+|++                                                |++|||++|.||+++|.+|
T Consensus        98 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  177 (190)
T 3con_A           98 CVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTL  177 (190)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999876                                                8999999999999999999


Q ss_pred             HHHHhcC
Q psy125          334 ARKLIGD  340 (385)
Q Consensus       334 ~~~i~~~  340 (385)
                      ++.+.+.
T Consensus       178 ~~~~~~~  184 (190)
T 3con_A          178 VREIRQY  184 (190)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.81  E-value=5.7e-20  Score=155.52  Aligned_cols=111  Identities=17%  Similarity=0.252  Sum_probs=87.9

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|++++..+.+. .+.+|++.+..  .+.+++  +.+.+|||||+++++.++..|++++|++|
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   97 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIV   97 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCceeE--EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEE
Confidence            45689999999999999999999877764 57788877643  344454  78999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh----------------------------------------------------------------hhe
Q psy125          302 IMFDVTSRITYKN----------------------------------------------------------------YYD  317 (385)
Q Consensus       302 lv~d~~~~~s~~~----------------------------------------------------------------~~e  317 (385)
                      +|||++++.||++                                                                |++
T Consensus        98 ~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (198)
T 1f6b_A           98 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM  177 (198)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEE
Confidence            9999999998876                                                                367


Q ss_pred             eccccCCCchHHHHHHHHHH
Q psy125          318 ISAKSNYNFEKPFLWLARKL  337 (385)
Q Consensus       318 ~Sak~~~~v~~~f~~l~~~i  337 (385)
                      |||++|.||+++|.+|++.+
T Consensus       178 ~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          178 CSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             CBTTTTBSHHHHHHHHHTTC
T ss_pred             EECCCCCCHHHHHHHHHHhc
Confidence            99999999999999998754

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.81  E-value=1.4e-19  Score=152.13  Aligned_cols=109  Identities=17%  Similarity=0.277  Sum_probs=93.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||++++++..+.+. .+.+|++.+.  ..+.+++  +.+.+|||||+++++.++..|++++|++|+
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~   96 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF   96 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEE--EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence            4579999999999999999999988764 5678887754  3444454  788999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-----------------------------------------------------------hheeccccC
Q psy125          303 MFDVTSRITYKN-----------------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       303 v~d~~~~~s~~~-----------------------------------------------------------~~e~Sak~~  323 (385)
                      |||++++.||++                                                           |+||||++|
T Consensus        97 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g  176 (190)
T 1m2o_B           97 LVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMR  176 (190)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTT
T ss_pred             EEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcC
Confidence            999999999876                                                           257999999


Q ss_pred             CCchHHHHHHHHH
Q psy125          324 YNFEKPFLWLARK  336 (385)
Q Consensus       324 ~~v~~~f~~l~~~  336 (385)
                      .||+++|.+|++.
T Consensus       177 ~gi~~l~~~l~~~  189 (190)
T 1m2o_B          177 NGYLEAFQWLSQY  189 (190)
T ss_dssp             BSHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHhh
Confidence            9999999999864

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.80  E-value=2.2e-19  Score=170.43  Aligned_cols=157  Identities=13%  Similarity=0.082  Sum_probs=99.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYI   80 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~~   80 (385)
                      .++|+|+|++|||||||+|+|++.. ...+.+.+|+|++........+++.+.+|||||+..+...        ...++.
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~~-~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~  311 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQE-RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMA  311 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhcc
Confidence            4799999999999999999966643 3345667778887765555556688999999998665432        234678


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      ++|++|+|+|++++.+++.+..+...+ ....+.|+++|+||+|+........ ..+......+++++||+++.|+++++
T Consensus       312 ~aD~vl~VvD~s~~~s~~~~~~~~~~l-~~l~~~piIvV~NK~Dl~~~~~~~~-~~l~~~~~~~~i~vSAktg~GI~eL~  389 (476)
T 3gee_A          312 EADLILYLLDLGTERLDDELTEIRELK-AAHPAAKFLTVANKLDRAANADALI-RAIADGTGTEVIGISALNGDGIDTLK  389 (476)
T ss_dssp             SCSEEEEEEETTTCSSGGGHHHHHHHH-HHCTTSEEEEEEECTTSCTTTHHHH-HHHHHHHTSCEEECBTTTTBSHHHHH
T ss_pred             cCCEEEEEEECCCCcchhhhHHHHHHH-HhcCCCCEEEEEECcCCCCccchhH-HHHHhcCCCceEEEEECCCCCHHHHH
Confidence            999999999999988876543333333 2334899999999999976543321 22333334789999999999999999


Q ss_pred             HHHHHHHh
Q psy125          161 LWLARKLI  168 (385)
Q Consensus       161 ~~i~~~l~  168 (385)
                      .+|.+.+.
T Consensus       390 ~~i~~~~~  397 (476)
T 3gee_A          390 QHMGDLVK  397 (476)
T ss_dssp             HHHTHHHH
T ss_pred             HHHHHHHh
Confidence            99999886

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.80  E-value=1.3e-19  Score=152.15  Aligned_cols=114  Identities=24%  Similarity=0.388  Sum_probs=98.0

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||++++++..+.+.. +.+|++.....  +..+  .+.+.+|||||++++..++..+++++|++|
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~--~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLET--LQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEE--EEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEE--EEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            356999999999999999999988777654 66777644333  3333  567899999999999999999999999999


Q ss_pred             EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125          302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      +|||++++.+|++                                                    |++|||++|.||+++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  174 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG  174 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence            9999999988876                                                    689999999999999


Q ss_pred             HHHHHHHHhcC
Q psy125          330 FLWLARKLIGD  340 (385)
Q Consensus       330 f~~l~~~i~~~  340 (385)
                      |.+|++.+.+.
T Consensus       175 ~~~l~~~i~~~  185 (189)
T 2x77_A          175 MDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.80  E-value=2.1e-19  Score=150.98  Aligned_cols=114  Identities=21%  Similarity=0.409  Sum_probs=96.5

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCc-cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGE-FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA  300 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~  300 (385)
                      ...+||+++|.+|||||+|+++++.+. +...+.+|++..  ...+.++  ++.+.||||||++++..++..+++++|++
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEGQAI   94 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECS--SCEEEEEEECCSTTTGGGGGGGGGGCSEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            356999999999999999999998777 567788888744  3344444  46789999999999999999999999999


Q ss_pred             EEEEeCCChhhhhh------------------------------------------------------hheeccccCCCc
Q psy125          301 IIMFDVTSRITYKN------------------------------------------------------YYDISAKSNYNF  326 (385)
Q Consensus       301 ilv~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v  326 (385)
                      |+|||++++.||++                                                      |++|||++|.||
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  174 (190)
T 2h57_A           95 IFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGL  174 (190)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCH
Confidence            99999999988865                                                      689999999999


Q ss_pred             hHHHHHHHHHHhc
Q psy125          327 EKPFLWLARKLIG  339 (385)
Q Consensus       327 ~~~f~~l~~~i~~  339 (385)
                      +++|.+|++.+.+
T Consensus       175 ~~l~~~l~~~i~~  187 (190)
T 2h57_A          175 QEGVDWLQDQIQT  187 (190)
T ss_dssp             HHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998743

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.80  E-value=1.6e-19  Score=150.61  Aligned_cols=113  Identities=24%  Similarity=0.387  Sum_probs=94.5

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+ ..+.+|+|.....  +..+  .+.+.+|||||++++..++..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~--~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET--LSYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEE--EEET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEE--EEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            3569999999999999999999887777 6777888755433  3333  477899999999999999999999999999


Q ss_pred             EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125          302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      +|||++++.+|++                                                    |++|||++|.||+++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG  170 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence            9999999998876                                                    689999999999999


Q ss_pred             HHHHHHHHhc
Q psy125          330 FLWLARKLIG  339 (385)
Q Consensus       330 f~~l~~~i~~  339 (385)
                      |.+|++.+.+
T Consensus       171 ~~~l~~~~~~  180 (183)
T 1moz_A          171 LDWLIDVIKE  180 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998864

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.79  E-value=3.9e-19  Score=150.53  Aligned_cols=118  Identities=31%  Similarity=0.575  Sum_probs=106.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+|++++|++|||||||++++.+..+...+.+++|.++....+.+++..+.+.+|||+|++++..++..++++++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            35899999999999999999999988888888999888888888899988899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|++                                                |++|||+++.|++++|.+|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999998876                                                78999999999999999999


Q ss_pred             HHHhcC
Q psy125          335 RKLIGD  340 (385)
Q Consensus       335 ~~i~~~  340 (385)
                      +.+.+.
T Consensus       164 ~~~~~~  169 (199)
T 2f9l_A          164 TEIYRI  169 (199)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.79  E-value=2.4e-18  Score=158.75  Aligned_cols=160  Identities=19%  Similarity=0.170  Sum_probs=116.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc---------chhh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---------LRDG   77 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~---------~~~~   77 (385)
                      ...++|+++|.+|||||||+|+|++....  .....+.|..........+...+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE--IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCE--EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            35689999999999999999997765522  222333444443333333457899999999754321         1123


Q ss_pred             hhccCcEEEEEEeCCChh--hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCC
Q psy125           78 YYIQGQCAIIMFDVTSRI--TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYN  155 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~--~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  155 (385)
                      +...+|++++|+|+++..  ++.....|+..+.....+.|+++|+||+|+.......+...++...+.+++++||++|.|
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g  322 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG  322 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence            345699999999998876  556566777777665458999999999999765544445556666778999999999999


Q ss_pred             hHHHHHHHHHHHh
Q psy125          156 FEKPFLWLARKLI  168 (385)
Q Consensus       156 i~~l~~~i~~~l~  168 (385)
                      +++++.+|.+.+.
T Consensus       323 i~~l~~~i~~~l~  335 (357)
T 2e87_A          323 IDLVKEEIIKTLR  335 (357)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998873

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.79  E-value=8.3e-20  Score=155.58  Aligned_cols=118  Identities=26%  Similarity=0.442  Sum_probs=72.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC--ccccccccceeeEEEEEEEEeCCe--eEEEEEeeCCCccccCcccccccccCc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHTNRG--AIRFNVWDTAGQEKFGGLRDGYYIQGQ  298 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~  298 (385)
                      ..+||+++|.+|||||+|+++++.+  .+...+.+|.+.++....+.+++.  .+.+.||||||++++..++..+++++|
T Consensus        19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   98 (208)
T 2yc2_C           19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY   98 (208)
T ss_dssp             EEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence            4689999999999999999999988  788888899887888888888876  889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhhhh----------------------------------------------------hheecccc-CCC
Q psy125          299 CAIIMFDVTSRITYKN----------------------------------------------------YYDISAKS-NYN  325 (385)
Q Consensus       299 ~~ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~-~~~  325 (385)
                      ++|+|||++++.+|++                                                    |++|||++ |.|
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~g  178 (208)
T 2yc2_C           99 YAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKD  178 (208)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC------
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcC
Confidence            9999999999988765                                                    78999999 999


Q ss_pred             chHHHHHHHHHHhcC
Q psy125          326 FEKPFLWLARKLIGD  340 (385)
Q Consensus       326 v~~~f~~l~~~i~~~  340 (385)
                      |+++|.+|++.+.+.
T Consensus       179 i~~l~~~i~~~~~~~  193 (208)
T 2yc2_C          179 ADAPFLSIATTFYRN  193 (208)
T ss_dssp             -CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988643

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.78  E-value=1.3e-18  Score=146.32  Aligned_cols=115  Identities=30%  Similarity=0.594  Sum_probs=106.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..++++++|++|||||||++++....+...+.+|+|.++....+.+++..+.+.+|||+|++++..++..++++++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            35899999999999999999999998888899999999888888899888888999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||+++..+|++                                                |++|||+++.|++++|++|.
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999988754                                                78899999999999999999


Q ss_pred             HHH
Q psy125          335 RKL  337 (385)
Q Consensus       335 ~~i  337 (385)
                      +.+
T Consensus       188 ~~i  190 (191)
T 1oix_A          188 TEI  190 (191)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.78  E-value=2.3e-19  Score=167.47  Aligned_cols=158  Identities=18%  Similarity=0.217  Sum_probs=109.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCee-EEEEEEeCCCccccccc-------hhhh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGA-IRFNVWDTAGQEKFGGL-------RDGY   78 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~-~~~~i~Dt~g~~~~~~~-------~~~~   78 (385)
                      ...++|+|+|+.|+|||||+|+|++..+ .......|+|.+.......... ..+.+|||||+..+...       ...+
T Consensus        32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           32 GFRRYIVVAGRRNVGKSSFMNALVGQNV-SIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHcCCC-CccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            4578999999999999999999766543 3334556666655444333222 38899999999876543       3457


Q ss_pred             hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHH
Q psy125           79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (385)
                      +.++|++|+|+|+....   ....|+..+..  .+.|+++|+||+|+...........+....+.+++++||+++.|+++
T Consensus       111 l~~aD~vllVvD~~~~~---~~~~~l~~l~~--~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~e  185 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTP---YEDDVVNLFKE--MEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDD  185 (423)
T ss_dssp             HTSCSEEEEECSSSCCH---HHHHHHHHHHH--TTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTT
T ss_pred             HhcCCEEEEEEeCCChH---HHHHHHHHHHh--cCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHH
Confidence            88999999999993322   22456666554  38999999999999765554444445555677999999999999999


Q ss_pred             HHHHHHHHHhcC
Q psy125          159 PFLWLARKLIGD  170 (385)
Q Consensus       159 l~~~i~~~l~~~  170 (385)
                      ++..|.+.+...
T Consensus       186 L~~~L~~~l~~~  197 (423)
T 3qq5_A          186 IGKTISEILPGD  197 (423)
T ss_dssp             HHHHHHHHSCCC
T ss_pred             HHHHHHHhhhhh
Confidence            999999998543

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.77  E-value=4.1e-19  Score=159.72  Aligned_cols=156  Identities=15%  Similarity=0.109  Sum_probs=121.8

Q ss_pred             HHHHHHhcCCCC-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh-hhhcHH
Q psy125           24 TFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKNVP  101 (385)
Q Consensus        24 TLin~ll~~~~~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~-~~~~~~  101 (385)
                      +|+++++.+.+. ..+.|+.|..+...   ...+. .+.+||+  +++++.++..+++++|++|+|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~---~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYT---PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEE---CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEE---EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            588888888887 78889999554422   22222 6889999  8888899999999999999999999987 677778


Q ss_pred             HHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcC--CeEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCC
Q psy125          102 NWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN--LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP  179 (385)
Q Consensus       102 ~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~  179 (385)
                      .|+..+..  .+.|+++|+||+|+.......+...+.....  ..++++||+++.|+++++..+..              
T Consensus       106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g--------------  169 (301)
T 1u0l_A          106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG--------------  169 (301)
T ss_dssp             HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS--------------
T ss_pred             HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC--------------
Confidence            88877654  5899999999999976543223334444444  78999999999999988765321              


Q ss_pred             CCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHHHHHHhc
Q psy125          180 ALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLT  246 (385)
Q Consensus       180 ~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~~~~~~~  246 (385)
                                                                   -.++++|++|+||||+++.+.+
T Consensus       170 ---------------------------------------------eiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          170 ---------------------------------------------KISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             ---------------------------------------------SEEEEECSTTSSHHHHHHHHST
T ss_pred             ---------------------------------------------CeEEEECCCCCcHHHHHHHhcc
Confidence                                                         1478999999999999999764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.77  E-value=3e-19  Score=149.30  Aligned_cols=118  Identities=21%  Similarity=0.334  Sum_probs=90.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC--ccccccccceeeEEEEEEEEe---CCeeEEEEEeeCCCccccCcccccccccCc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTG--EFEKKYVATLGVEVHPLVFHT---NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQ  298 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~  298 (385)
                      .+|++++|++|||||||++++...  .+...+.+|+|.++....+.+   ++..+.+.+|||+|+++|..+++.|+++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            379999999999999999998874  566678888888877665543   335678999999999999999999999999


Q ss_pred             EEEEEEeCCCh-hhhhh------------------------------------------------------hheeccccC
Q psy125          299 CAIIMFDVTSR-ITYKN------------------------------------------------------YYDISAKSN  323 (385)
Q Consensus       299 ~~ilv~d~~~~-~s~~~------------------------------------------------------~~e~Sak~~  323 (385)
                      ++++|||++++ .+|++                                                      |+||||++|
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE  161 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence            99999999998 46765                                                      578999999


Q ss_pred             C-CchHHHHHHHHHHhcCC
Q psy125          324 Y-NFEKPFLWLARKLIGDP  341 (385)
Q Consensus       324 ~-~v~~~f~~l~~~i~~~~  341 (385)
                      . |++++|..|++.+.+.+
T Consensus       162 ~~~~~~l~~~i~~~~~~~~  180 (184)
T 2zej_A          162 SDALAKLRKTIINESLNFK  180 (184)
T ss_dssp             CHHHHHHHHHHHHHHHCC-
T ss_pred             chhHHHHHHHHHHHHhccc
Confidence            6 99999999999887644

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.77  E-value=6.4e-19  Score=160.51  Aligned_cols=114  Identities=26%  Similarity=0.418  Sum_probs=92.6

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|++++..+.+...+ +|++..+..    ++...+.+.||||||+++|..++..+++++|++|
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~~----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vi  237 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLI  237 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEEE----EEETTEEEEEEECC-----CCSHHHHHTTEEEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEEE----EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            35689999999999999999999888776543 566655433    2334578999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125          302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      +|||++++.+|+.                                                    |++|||++|.||+++
T Consensus       238 lV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el  317 (329)
T 3o47_A          238 FVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG  317 (329)
T ss_dssp             EEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHH
Confidence            9999999999877                                                    689999999999999


Q ss_pred             HHHHHHHHhcC
Q psy125          330 FLWLARKLIGD  340 (385)
Q Consensus       330 f~~l~~~i~~~  340 (385)
                      |.+|++.+.+.
T Consensus       318 ~~~l~~~l~~~  328 (329)
T 3o47_A          318 LDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHTC-
T ss_pred             HHHHHHHHHhc
Confidence            99999988654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.77  E-value=2.4e-19  Score=154.10  Aligned_cols=144  Identities=14%  Similarity=0.162  Sum_probs=98.5

Q ss_pred             CCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc---ccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhh
Q psy125            3 AEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYY   79 (385)
Q Consensus         3 ~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~---~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~   79 (385)
                      .....+.++|+++|++|+|||||+++|+++.+...   +.++.+         .....+.+.+|||||++.++..+..++
T Consensus         6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~   76 (218)
T 1nrj_B            6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYL   76 (218)
T ss_dssp             ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE---------TTGGGSSCEEEECCCCGGGTHHHHHHH
T ss_pred             CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE---------EEeeCceEEEEECCCcHHHHHHHHHHH
Confidence            33345679999999999999999999888765432   222221         122556789999999998888777777


Q ss_pred             cc----CcEEEEEEeCC-ChhhhhcHHHHHHHHHHh-----cCCCCEEEEEeCCCCcchhh--------hHHHHHHHHhc
Q psy125           80 IQ----GQCAIIMFDVT-SRITYKNVPNWHRDLVRV-----CENIPIVLCGNKVDIKDRKV--------KAKSIVFHRKK  141 (385)
Q Consensus        80 ~~----~d~illV~d~~-~~~~~~~~~~~~~~l~~~-----~~~~~~ilv~nK~Dl~~~~~--------~~~~~~~~~~~  141 (385)
                      ..    +|++|+|+|++ ++.++.....|+..+...     ..+.|+++|+||+|+.....        ..+...+....
T Consensus        77 ~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~  156 (218)
T 1nrj_B           77 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERR  156 (218)
T ss_dssp             HHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence            76    89999999999 888888777777776552     25799999999999875432        12233444455


Q ss_pred             CCeEEEEcCCCCCC
Q psy125          142 NLQYYDISAKSNYN  155 (385)
Q Consensus       142 ~~~~~~~Sa~~~~g  155 (385)
                      +..++++|++++.+
T Consensus       157 ~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          157 KKSLNEVERKINEE  170 (218)
T ss_dssp             HHHHHC--------
T ss_pred             hccccccccccccc
Confidence            56788999988765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.64  E-value=2.4e-20  Score=158.68  Aligned_cols=115  Identities=30%  Similarity=0.474  Sum_probs=101.4

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++++.+.+...+.++.+..+ ...+..++..+.+.+|||||++++..++..+++++|++|
T Consensus        28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii  106 (204)
T 3th5_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL  106 (204)
Confidence            3568999999999999999999998888888888876544 444566777788899999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------------------hheecc
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------------------YYDISA  320 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------------------~~e~Sa  320 (385)
                      +|||++++.+|++                                                             |++|||
T Consensus       107 lv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA  186 (204)
T 3th5_A          107 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  186 (204)
Confidence            9999999998876                                                             578999


Q ss_pred             ccCCCchHHHHHHHHHH
Q psy125          321 KSNYNFEKPFLWLARKL  337 (385)
Q Consensus       321 k~~~~v~~~f~~l~~~i  337 (385)
                      ++|.||+++|.+|++.+
T Consensus       187 ~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          187 LTQRGLKTVFDEAIRAV  203 (204)
Confidence            99999999999998875

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.77  E-value=3.9e-18  Score=156.10  Aligned_cols=117  Identities=27%  Similarity=0.445  Sum_probs=105.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..++|+++|.+|||||+|++++..+.+...+.+|.+..+ ...+.+++..+.+.+|||||++++..++..+++++|++|+
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~  232 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI  232 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence            458999999999999999999999999888888887555 4556778888899999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125          303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK  321 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak  321 (385)
                      |||++++.||++                                                             |++|||+
T Consensus       233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  312 (332)
T 2wkq_A          233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  312 (332)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence            999999999876                                                             5789999


Q ss_pred             cCCCchHHHHHHHHHHhcC
Q psy125          322 SNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       322 ~~~~v~~~f~~l~~~i~~~  340 (385)
                      +|.||+++|.+|++.++..
T Consensus       313 ~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          313 TQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             TCTTHHHHHHHHHHHHHC-
T ss_pred             CCcCHHHHHHHHHHHHhcC
Confidence            9999999999999998754

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.77  E-value=1.2e-18  Score=144.52  Aligned_cols=118  Identities=14%  Similarity=0.164  Sum_probs=99.0

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...++|+++|.+|||||+|+++++.+.+...+.++.+.+.....+..++.  .+.+|||||++++..++..++..+|++|
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   83 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI   83 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence            45689999999999999999999988887776666655555555555554  5789999999999999999999999999


Q ss_pred             EEEeCCC---hhhhhh-----------------------------------------------hheeccccCCCchHHHH
Q psy125          302 IMFDVTS---RITYKN-----------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       302 lv~d~~~---~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      +|||+++   ..+++.                                               |++|||++|.||+++|.
T Consensus        84 ~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  163 (178)
T 2lkc_A           84 LVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLE  163 (178)
T ss_dssp             EEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHH
Confidence            9999998   555544                                               57899999999999999


Q ss_pred             HHHHHHhcCC
Q psy125          332 WLARKLIGDP  341 (385)
Q Consensus       332 ~l~~~i~~~~  341 (385)
                      +|++.+....
T Consensus       164 ~l~~~~~~~~  173 (178)
T 2lkc_A          164 MILLVSEMEE  173 (178)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHhhhhhc
Confidence            9999876543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.76  E-value=9.1e-19  Score=147.87  Aligned_cols=113  Identities=19%  Similarity=0.241  Sum_probs=88.9

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEE--EEEEEeC-CeeEEEEEeeCCCccccCccc---ccccc
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH--PLVFHTN-RGAIRFNVWDTAGQEKFGGLR---DGYYI  295 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~---~~~~~  295 (385)
                      ...+||+++|.+|||||+|++++. +.+...  ++++.++.  .....+. +..+.+.||||||+++|..+.   ..|++
T Consensus        18 ~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~   94 (196)
T 3llu_A           18 GSKPRILLMGLRRSGKSSIQKVVF-HKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR   94 (196)
T ss_dssp             --CCEEEEEESTTSSHHHHHHHHH-SCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHH-hcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence            357999999999999999999754 555544  33333333  3333333 566889999999999998877   79999


Q ss_pred             cCcEEEEEEeCCCh--hhhhh----------------------------------------------------------h
Q psy125          296 QGQCAIIMFDVTSR--ITYKN----------------------------------------------------------Y  315 (385)
Q Consensus       296 ~~~~~ilv~d~~~~--~s~~~----------------------------------------------------------~  315 (385)
                      ++|++|+|||++++  .+++.                                                          |
T Consensus        95 ~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  174 (196)
T 3llu_A           95 GTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSF  174 (196)
T ss_dssp             TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEE
T ss_pred             cCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcce
Confidence            99999999999997  45443                                                          7


Q ss_pred             heeccccCCCchHHHHHHHHHHh
Q psy125          316 YDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       316 ~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                      +||||++ .||+++|..|++.|+
T Consensus       175 ~e~Sa~~-~~v~~~f~~l~~~li  196 (196)
T 3llu_A          175 YLTSIYD-HSIFEAFSKVVQKLI  196 (196)
T ss_dssp             EEECTTS-THHHHHHHHHHHHTC
T ss_pred             EEEEech-hhHHHHHHHHHHHhC
Confidence            8999999 999999999999763

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.76  E-value=3.5e-19  Score=158.98  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=87.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCcccc---ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc---ccccccccCcE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEK---KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---LRDGYYIQGQC  299 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---~~~~~~~~~~~  299 (385)
                      |++++|.+|||||++++++..+.+..   .+.+|+|.++...    + ..++++|||||||++|+.   .++.||++++|
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v----~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF----S-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE----C-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE----c-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999876543332   3678888777542    2 457899999999999975   46889999999


Q ss_pred             EEEEEeCCCh--hhhhh----------------------------------------------------------hheec
Q psy125          300 AIIMFDVTSR--ITYKN----------------------------------------------------------YYDIS  319 (385)
Q Consensus       300 ~ilv~d~~~~--~s~~~----------------------------------------------------------~~e~S  319 (385)
                      +|+|||++++  .+++.                                                          |+|||
T Consensus        76 ~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTS  155 (331)
T 3r7w_B           76 LVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTS  155 (331)
T ss_dssp             EEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCC
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEec
Confidence            9999999998  22111                                                          78999


Q ss_pred             cccCCCchHHHHHHHHHHhcC
Q psy125          320 AKSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       320 ak~~~~v~~~f~~l~~~i~~~  340 (385)
                      ||+ .||.++|..++++++.+
T Consensus       156 Akd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          156 IFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             SSS-SHHHHHHHHHHTTSSTT
T ss_pred             cCC-CcHHHHHHHHHHHHHhh
Confidence            998 59999999999988753

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.75  E-value=4e-18  Score=148.58  Aligned_cols=162  Identities=11%  Similarity=0.001  Sum_probs=105.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc-----------cccch
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-----------FGGLR   75 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~-----------~~~~~   75 (385)
                      .+.+||+|+|++|||||||+|+|++........+..++|..+........+..+.+|||||...           +....
T Consensus        27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~  106 (239)
T 3lxx_A           27 NSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCI  106 (239)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHH
Confidence            4579999999999999999999998777665555556777666655555667899999999542           22233


Q ss_pred             hhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHH---hcCCCCEEEEEeCCCCcchhhh--------HHHHHHHHhcCCe
Q psy125           76 DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR---VCENIPIVLCGNKVDIKDRKVK--------AKSIVFHRKKNLQ  144 (385)
Q Consensus        76 ~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~---~~~~~~~ilv~nK~Dl~~~~~~--------~~~~~~~~~~~~~  144 (385)
                      ..+++++|++|+|+|++......  ..++..+..   .....|+++|+||+|+......        .....+....+..
T Consensus       107 ~~~~~~~~~~l~v~d~~~~~~~~--~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~  184 (239)
T 3lxx_A          107 LLTSPGPHALLLVVPLGRYTEEE--HKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR  184 (239)
T ss_dssp             HHTTTCCSEEEEEEETTCCSSHH--HHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSS
T ss_pred             HhcCCCCcEEEEEeeCCCCCHHH--HHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE
Confidence            34456789999999997543311  223333322   1134689999999998654321        2455667777778


Q ss_pred             EEEEcCCCC-----CChHHHHHHHHHHHhcC
Q psy125          145 YYDISAKSN-----YNFEKPFLWLARKLIGD  170 (385)
Q Consensus       145 ~~~~Sa~~~-----~gi~~l~~~i~~~l~~~  170 (385)
                      ++.++...+     .++.+++..+...+..+
T Consensus       185 ~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          185 YCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            888876643     57888888888877553

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.75  E-value=4.9e-18  Score=139.23  Aligned_cols=112  Identities=19%  Similarity=0.190  Sum_probs=85.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc------ccccccc--
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYYI--  295 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~~~--  295 (385)
                      .++++++|++|||||||++++....+.....++.+.+.....+..++  ..+.+|||||++++..      +...|++  
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~   80 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE   80 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence            47999999999999999999987666444334333333344444443  5789999999998863      3456775  


Q ss_pred             cCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHHH
Q psy125          296 QGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       296 ~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      +++++++|||+++..++..                                         |++|||++|.||+++|.+|+
T Consensus        81 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~  160 (165)
T 2wji_A           81 KPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAIS  160 (165)
T ss_dssp             CCSEEEEEEETTCHHHHHHHHHHHHHTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHH
T ss_pred             CCCEEEEEecCCchhHhHHHHHHHHhcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHH
Confidence            8999999999999766433                                         79999999999999999999


Q ss_pred             HHH
Q psy125          335 RKL  337 (385)
Q Consensus       335 ~~i  337 (385)
                      +.+
T Consensus       161 ~~~  163 (165)
T 2wji_A          161 IAV  163 (165)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            876

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.75  E-value=1.1e-18  Score=165.65  Aligned_cols=153  Identities=18%  Similarity=0.157  Sum_probs=111.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc-cccc--------chhhhh
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE-KFGG--------LRDGYY   79 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~-~~~~--------~~~~~~   79 (385)
                      .++|+|+|.+|||||||+|+|++..+ ..+.+.+++|++.....+..++..+.+|||||.. .+..        ....++
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            37999999999999999999777543 3445667777766544444456789999999987 5432        234577


Q ss_pred             ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125           80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      .++|++|+|+|++++.+++.. .++..    ..+.|+++|+||+|+.......+...+. ....+++++||+++.|++++
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~-~il~~----l~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL  395 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDR-KILER----IKNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEKL  395 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHH-HHHHH----HTTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHHH
T ss_pred             hcccEEEEEecCCCCCCHHHH-HHHHH----hcCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHHHH
Confidence            899999999999988766543 22222    2578999999999996532222222222 23358999999999999999


Q ss_pred             HHHHHHHHh
Q psy125          160 FLWLARKLI  168 (385)
Q Consensus       160 ~~~i~~~l~  168 (385)
                      +..|.+.+.
T Consensus       396 ~~~l~~~~~  404 (482)
T 1xzp_A          396 EESIYRETQ  404 (482)
T ss_dssp             HHHHHHHTH
T ss_pred             HHHHHHHHh
Confidence            999998764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.75  E-value=3.1e-18  Score=151.26  Aligned_cols=167  Identities=8%  Similarity=0.009  Sum_probs=106.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccch-----------
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR-----------   75 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~-----------   75 (385)
                      .+.++|+|+|++|||||||+|+|++...........++|+........+.+..+.+|||||+.......           
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~   99 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCY   99 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHH
Confidence            467999999999999999999988766333222222245555444444556789999999986543321           


Q ss_pred             hhhhccCcEEEEEEeCCChhhh-hcHHHHHHHHHHhcCCCCEEEEEe-CCCCcchhhh--------HHHHHHHHhcCCe-
Q psy125           76 DGYYIQGQCAIIMFDVTSRITY-KNVPNWHRDLVRVCENIPIVLCGN-KVDIKDRKVK--------AKSIVFHRKKNLQ-  144 (385)
Q Consensus        76 ~~~~~~~d~illV~d~~~~~~~-~~~~~~~~~l~~~~~~~~~ilv~n-K~Dl~~~~~~--------~~~~~~~~~~~~~-  144 (385)
                      ..+++.+|++|+|+|+++.... ..+..++..+.......|.++++| |+|+......        .....+....... 
T Consensus       100 ~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~  179 (260)
T 2xtp_A          100 LLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGRI  179 (260)
T ss_dssp             HHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCE
T ss_pred             HhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCeE
Confidence            2266889999999999862211 112223333322111456776666 9998643211        1122233433332 


Q ss_pred             --E--EEEcCCCCCChHHHHHHHHHHHhcCCCc
Q psy125          145 --Y--YDISAKSNYNFEKPFLWLARKLIGDPNL  173 (385)
Q Consensus       145 --~--~~~Sa~~~~gi~~l~~~i~~~l~~~~~~  173 (385)
                        +  +++||+++.|+++++..|...+...+..
T Consensus       180 ~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~~  212 (260)
T 2xtp_A          180 CAFNNRAEGSNQDDQVKELMDCIEDLLMEKNGD  212 (260)
T ss_dssp             EECCTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             EEecCcccccccHHHHHHHHHHHHHHHHhCCCC
Confidence              2  6789999999999999999998876533

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.75  E-value=1.7e-18  Score=163.96  Aligned_cols=158  Identities=16%  Similarity=0.115  Sum_probs=108.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc----------cccch-h
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK----------FGGLR-D   76 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~----------~~~~~-~   76 (385)
                      ..+||+++|++|||||||+|+|++..+ ....+..|+|++........++..+.+|||||+.+          +.... .
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~-~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  252 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  252 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTT-EEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCc-eeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence            468999999999999999999877543 23445667777765544444456799999999732          22222 2


Q ss_pred             hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHH-----HHHhcCCeEEEEc
Q psy125           77 GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIV-----FHRKKNLQYYDIS  149 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~-----~~~~~~~~~~~~S  149 (385)
                      .++.++|++++|+|++++.+++.. .|...+..  .+.|+++|+||+|+.....  ..+...     +......+++++|
T Consensus       253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S  329 (436)
T 2hjg_A          253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS  329 (436)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred             HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence            467889999999999998777664 45555443  5799999999999865322  111211     1223456899999


Q ss_pred             CCCCCChHHHHHHHHHHHhc
Q psy125          150 AKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~  169 (385)
                      |++|.|+++++..+.+.+..
T Consensus       330 A~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          330 ALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             TTTCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHH
Confidence            99999999999999988754

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.74  E-value=3.3e-18  Score=146.46  Aligned_cols=85  Identities=19%  Similarity=0.271  Sum_probs=70.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCe-eEEEEEeeCCCccccCc-ccccccccCcEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFGG-LRDGYYIQGQCA  300 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~  300 (385)
                      ..+||+++|.+|||||+|+++++.+.|...+.++. .++..  +.+++. .+.+.||||||+++|.. ++..|++++|++
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~   82 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV   82 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence            45899999999999999999999988888776543 34433  555544 67899999999999988 888999999999


Q ss_pred             EEEEeCCChh
Q psy125          301 IIMFDVTSRI  310 (385)
Q Consensus       301 ilv~d~~~~~  310 (385)
                      |+|||+++..
T Consensus        83 i~v~d~~~~~   92 (214)
T 2fh5_B           83 VFVVDSAAFQ   92 (214)
T ss_dssp             EEEEETTTHH
T ss_pred             EEEEECCCcC
Confidence            9999999854

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.74  E-value=8.1e-18  Score=153.06  Aligned_cols=158  Identities=18%  Similarity=0.218  Sum_probs=112.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCccc----cccchhhhh---ccC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEK----FGGLRDGYY---IQG   82 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~----~~~~~~~~~---~~~   82 (385)
                      +|+|+|.+|||||||+|+|+.....  ....+.+|.......+... ...+.+|||||+..    ...+...++   ..+
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~--i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCc--cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            6899999999999999997764421  1223333433333333322 26789999999642    333444444   459


Q ss_pred             cEEEEEEeCCC---hhhhhcHHHHHHHHHHhc---CCCCEEEEEeCCCCcchhhhHHHHHHHHhcC--CeEEEEcCCCCC
Q psy125           83 QCAIIMFDVTS---RITYKNVPNWHRDLVRVC---ENIPIVLCGNKVDIKDRKVKAKSIVFHRKKN--LQYYDISAKSNY  154 (385)
Q Consensus        83 d~illV~d~~~---~~~~~~~~~~~~~l~~~~---~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~  154 (385)
                      +++|+|+|+++   ...++.+..|..++....   .++|+++|+||+|+.....  ....+.....  .+++++||+++.
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e--~~~~l~~~l~~~~~v~~iSA~tg~  315 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAE--NLEAFKEKLTDDYPVFPISAVTRE  315 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHH--HHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHH--HHHHHHHHhhcCCCEEEEECCCCc
Confidence            99999999988   667777777887777642   4789999999999875432  2233444433  578999999999


Q ss_pred             ChHHHHHHHHHHHhcCCC
Q psy125          155 NFEKPFLWLARKLIGDPN  172 (385)
Q Consensus       155 gi~~l~~~i~~~l~~~~~  172 (385)
                      |+++++..|.+.+...+.
T Consensus       316 gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          316 GLRELLFEVANQLENTPE  333 (342)
T ss_dssp             TTHHHHHHHHHHHTSCCC
T ss_pred             CHHHHHHHHHHHHhhCcc
Confidence            999999999999876543

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.73  E-value=5.1e-17  Score=152.24  Aligned_cols=163  Identities=15%  Similarity=0.079  Sum_probs=111.8

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEE--------E-----------EEeCCeeEEEEEEe
Q psy125            4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL--------V-----------FHTNRGAIRFNVWD   64 (385)
Q Consensus         4 ~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~--------~-----------~~~~~~~~~~~i~D   64 (385)
                      .+..+.++|+++|++|+|||||+|+|++..... .......+....        .           .........+.+||
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD   81 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID   81 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence            345678999999999999999999977632221 000111100000        0           00011237899999


Q ss_pred             CCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH----HHHHHHHh
Q psy125           65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----KSIVFHRK  140 (385)
Q Consensus        65 t~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~----~~~~~~~~  140 (385)
                      |||++.+.......+.++|++|+|+|+++..++.....++..+.. ....|+++++||+|+.......    +..++...
T Consensus        82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGI-IGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHH-cCCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            999999888888889999999999999987655555555544433 2456899999999997654322    22222221


Q ss_pred             ---cCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          141 ---KNLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       141 ---~~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                         ...+++++||+++.|+++++..|.+.+.
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence               1458999999999999999999998753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.73  E-value=3.5e-18  Score=143.97  Aligned_cols=113  Identities=12%  Similarity=0.215  Sum_probs=87.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCC----------ccccCccccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG----------QEKFGGLRDG  292 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~  292 (385)
                      ..++|+++|.+|||||||+++++.+.|...+.+++|++........++   .+.+|||||          ++.+..++..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   98 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence            568999999999999999999998888888888888887766666654   479999999          7777777888


Q ss_pred             ccccC---cEEEEEEeCCChhhhhh-----------------------------------------------hheecccc
Q psy125          293 YYIQG---QCAIIMFDVTSRITYKN-----------------------------------------------YYDISAKS  322 (385)
Q Consensus       293 ~~~~~---~~~ilv~d~~~~~s~~~-----------------------------------------------~~e~Sak~  322 (385)
                      |++.+   |++++|||++++.++.+                                               |++|||++
T Consensus        99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  178 (195)
T 1svi_A           99 YITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSET  178 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTT
T ss_pred             HHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccC
Confidence            88877   99999999999877766                                               78999999


Q ss_pred             CCCchHHHHHHHHHHh
Q psy125          323 NYNFEKPFLWLARKLI  338 (385)
Q Consensus       323 ~~~v~~~f~~l~~~i~  338 (385)
                      |.||+++|.+|++.+.
T Consensus       179 ~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          179 KKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CTTHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhc
Confidence            9999999999998774

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.72  E-value=8.7e-18  Score=160.06  Aligned_cols=159  Identities=17%  Similarity=0.130  Sum_probs=108.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCC----------ccccccchh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG----------QEKFGGLRD   76 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g----------~~~~~~~~~   76 (385)
                      ...++|+++|.+|+|||||+|+|++.. .....+.+|+|++.........+..+.+|||||          ++.+.....
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  271 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEE-RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  271 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTST-TEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCC-ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence            456899999999999999999977643 234456667777654444444456899999999          344433333


Q ss_pred             -hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhc-----CCeEEEE
Q psy125           77 -GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKK-----NLQYYDI  148 (385)
Q Consensus        77 -~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~-----~~~~~~~  148 (385)
                       .++.++|++|+|+|+++....+. ..|...+..  .++|+++|+||+|+.....  ..+..+.....     ..+++++
T Consensus       272 ~~~~~~ad~~llviD~~~~~~~~~-~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  348 (456)
T 4dcu_A          272 LKAIDRSEVVAVVLDGEEGIIEQD-KRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM  348 (456)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHhhCCEEEEEEeCCCCcCHHH-HHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence             46789999999999988544322 234444433  5799999999999865322  22233333322     4689999


Q ss_pred             cCCCCCChHHHHHHHHHHHhc
Q psy125          149 SAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      ||+++.|+++++..+.+.+..
T Consensus       349 SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          349 SALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             CTTTCTTGGGHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHHH
Confidence            999999999999999988754

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.72  E-value=1.4e-18  Score=152.78  Aligned_cols=117  Identities=19%  Similarity=0.266  Sum_probs=90.7

Q ss_pred             CCeeEEEEECCC---------CCCHHHHHHHHhc---Cccccccccce-eeEEEEEEE--------------EeCCeeEE
Q psy125          222 MPSFKCVLVGDG---------GTGKTTFVKRHLT---GEFEKKYVATL-GVEVHPLVF--------------HTNRGAIR  274 (385)
Q Consensus       222 ~~~~~i~~~G~~---------~vgks~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~~~  274 (385)
                      ...+||+++|.+         |||||+|+++++.   +.+...+.++. +.++..+.+              .+++..+.
T Consensus        17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~   96 (255)
T 3c5h_A           17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK   96 (255)
T ss_dssp             CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred             CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence            456999999999         9999999999998   56666666664 333222211              13566788


Q ss_pred             EEEee-----------------------CCCccccCcccccccc---------------------cCcEEEEEEeCCCh-
Q psy125          275 FNVWD-----------------------TAGQEKFGGLRDGYYI---------------------QGQCAIIMFDVTSR-  309 (385)
Q Consensus       275 l~i~D-----------------------t~G~~~~~~~~~~~~~---------------------~~~~~ilv~d~~~~-  309 (385)
                      +.|||                       ++|+++|..++..||+                     +||++|+|||++++ 
T Consensus        97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~  176 (255)
T 3c5h_A           97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM  176 (255)
T ss_dssp             EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred             EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence            99999                       8899999999999998                     89999999999998 


Q ss_pred             -hhhhh------------------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125          310 -ITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       310 -~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                       .||++                                                |++|||++|.||+++|.+|++.+.
T Consensus       177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence             88876                                                789999999999999999999874

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.71  E-value=3.3e-18  Score=161.80  Aligned_cols=154  Identities=14%  Similarity=0.151  Sum_probs=101.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hhhhhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RDGYYI   80 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~~~~~   80 (385)
                      .++|+|+|++|||||||+|+|++..+ ..+...+++|++........++..+.+|||||.......        ...++.
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~  302 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQSDR-AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAAN  302 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHB-SCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCc-ccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhh
Confidence            57999999999999999999877543 223344566655433223334577899999997544322        233578


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      ++|++++|+|++++.+... ..++..+    ...|+++|+||+|+...........+  ....+++++||+++.|+++++
T Consensus       303 ~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~--~~~~~~i~iSAktg~Gi~eL~  375 (462)
T 3geh_A          303 TADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYP--ENITQIVHTAAAQKQGIDSLE  375 (462)
T ss_dssp             SCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCC--TTCCCEEEEBTTTTBSHHHHH
T ss_pred             cCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHh--ccCCcEEEEECCCCCCHHHHH
Confidence            8999999999998765433 2333333    45799999999998765432211111  134589999999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          161 LWLARKLIGD  170 (385)
Q Consensus       161 ~~i~~~l~~~  170 (385)
                      ..|.+.+...
T Consensus       376 ~~i~~~~~~~  385 (462)
T 3geh_A          376 TAILEIVQTG  385 (462)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHhcc
Confidence            9999987543

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.71  E-value=4.9e-17  Score=154.14  Aligned_cols=158  Identities=17%  Similarity=0.129  Sum_probs=104.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc------------h
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL------------R   75 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~------------~   75 (385)
                      ..++|+|+|++|||||||+|+|++.. ...+.+.+|+|++.....+...+..+.+|||+|.......            .
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~-~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~  257 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV  257 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTST-TEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCc-ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence            45899999999999999999977654 3345667788877655444444457889999997432211            1


Q ss_pred             hhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHH-----HHHHhcCCeEEEE
Q psy125           76 DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSI-----VFHRKKNLQYYDI  148 (385)
Q Consensus        76 ~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~-----~~~~~~~~~~~~~  148 (385)
                      ..++..+|++++|+|+.+..+.+.. .+...+..  .+.|+++++||+|+.....  ..+..     .+......+++++
T Consensus       258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (439)
T 1mky_A          258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT  334 (439)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence            2356789999999999876554431 22222222  5789999999999865332  11111     1222345689999


Q ss_pred             cCCCCCChHHHHHHHHHHHhc
Q psy125          149 SAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      ||++|.|+++++..+.+.+..
T Consensus       335 SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          335 SADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999887644

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.71  E-value=3.4e-17  Score=135.17  Aligned_cols=114  Identities=18%  Similarity=0.123  Sum_probs=85.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCcccccccccee--eEEEEEEEEeCCeeEEEEEeeCCCccccCccc--------cc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG--VEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR--------DG  292 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~  292 (385)
                      ...||+++|.+|||||||++++....+.. ..+..+  .++....+.+++.  .+.+|||||++++....        ..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAAI-VTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQ   79 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCSC-CCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcce-eeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHH
Confidence            34799999999999999999988665321 122222  2344555566653  47899999997653221        13


Q ss_pred             ccccCcEEEEEEeCCChhhhhh----------------------------------------hheeccccCCCchHHHHH
Q psy125          293 YYIQGQCAIIMFDVTSRITYKN----------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       293 ~~~~~~~~ilv~d~~~~~s~~~----------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      +++++|++|+|||++++.||+.                                        |++|||++|.||+++|.+
T Consensus        80 ~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~  159 (172)
T 2gj8_A           80 EIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNH  159 (172)
T ss_dssp             HHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHHH
T ss_pred             HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhhhhhccCCceEEEeCCCCCCHHHHHHH
Confidence            6899999999999999888755                                        799999999999999999


Q ss_pred             HHHHHhc
Q psy125          333 LARKLIG  339 (385)
Q Consensus       333 l~~~i~~  339 (385)
                      |++.+..
T Consensus       160 l~~~~~~  166 (172)
T 2gj8_A          160 LKQSMGF  166 (172)
T ss_dssp             HHHHC--
T ss_pred             HHHHhhh
Confidence            9987644

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.71  E-value=6.8e-17  Score=156.97  Aligned_cols=157  Identities=14%  Similarity=0.157  Sum_probs=107.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCC--CC-----Ccc------cccceeeeEEEEEEe-----CCeeEEEEEEeCCCccc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGE--FE-----KKY------VATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEK   70 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~--~~-----~~~------~~~~g~t~~~~~~~~-----~~~~~~~~i~Dt~g~~~   70 (385)
                      ..+|+|+|+.|+|||||+++|+...  ..     ..+      ....|.|........     ++..+.+++|||||+.+
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            4689999999999999999987621  11     111      123455555433333     34468999999999999


Q ss_pred             cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEEE
Q psy125           71 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYYD  147 (385)
Q Consensus        71 ~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~  147 (385)
                      +...+..++..+|++|+|+|+++...++....|.....   .++|+++++||+|+..........++....+.   .++.
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~  160 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR  160 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEE
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEE
Confidence            88888888999999999999999877776666665443   47899999999999764332222334444444   4899


Q ss_pred             EcCCCCCChHHHHHHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      +||+++.|+++++..|.+.+.
T Consensus       161 vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          161 CSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             ECTTTCTTHHHHHHHHHHHSC
T ss_pred             eecccCCCchhHHHHHhhcCC
Confidence            999999999999999998763

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.71  E-value=3.9e-17  Score=156.53  Aligned_cols=153  Identities=22%  Similarity=0.193  Sum_probs=104.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCC-----------------------------CCcccccceeeeEEEEEEeCCee
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYVATLGVEVHPLVFHTNRGA   57 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~-----------------------------~~~~~~~~g~t~~~~~~~~~~~~   57 (385)
                      .+.+||+++|++|+|||||+++|+....                             ........|+|.+..........
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            3569999999999999999999875411                             01112234677777777777778


Q ss_pred             EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhh-----cHHHHHHHHHHhcCCCCEEEEEeCCCCcch--hh
Q psy125           58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK-----NVPNWHRDLVRVCENIPIVLCGNKVDIKDR--KV  130 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~-----~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--~~  130 (385)
                      ..+.+|||||++++...+..++.++|++|+|+|+++...+.     ....+...+.......|+++|+||+|+...  ..
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~  190 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR  190 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence            89999999999999888888999999999999999864321     112222233333344579999999998752  11


Q ss_pred             ----hHHHHHHHHhc-----CCeEEEEcCCCCCChHHH
Q psy125          131 ----KAKSIVFHRKK-----NLQYYDISAKSNYNFEKP  159 (385)
Q Consensus       131 ----~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l  159 (385)
                          ..+...+....     ..+++++||+++.|+.++
T Consensus       191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence                12222222222     357899999999998753

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.70  E-value=6.4e-17  Score=154.46  Aligned_cols=161  Identities=17%  Similarity=0.086  Sum_probs=108.1

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCC----C-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhh
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEF----E-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYY   79 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~----~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~   79 (385)
                      +.|+.++|+++|+.++|||||+++|++...    . .......|+|.+............+.+|||||++.+...+...+
T Consensus        15 ~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~~   94 (482)
T 1wb1_A           15 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAA   94 (482)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHT
T ss_pred             hcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHHH
Confidence            346789999999999999999999876541    1 11123344554433322222457899999999998877788888


Q ss_pred             ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHHhc----CCeEEEEcCC
Q psy125           80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHRKK----NLQYYDISAK  151 (385)
Q Consensus        80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~~----~~~~~~~Sa~  151 (385)
                      .++|++|+|+|+++....+.. .++..+..  .+.|.++++||+|+.....    ..+...+....    ..+++++||+
T Consensus        95 ~~aD~~ilVvda~~g~~~qt~-e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~  171 (482)
T 1wb1_A           95 DIIDLALIVVDAKEGPKTQTG-EHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  171 (482)
T ss_dssp             TSCCEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hhCCEEEEEEecCCCccHHHH-HHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECc
Confidence            999999999999884322221 22222222  4688899999999975332    22333444333    4689999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q psy125          152 SNYNFEKPFLWLARKLI  168 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~  168 (385)
                      ++.|+++++..|.+.+.
T Consensus       172 ~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          172 TGFGVDELKNLIITTLN  188 (482)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHhhc
Confidence            99999999999999774

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.69  E-value=1.2e-16  Score=133.72  Aligned_cols=118  Identities=19%  Similarity=0.175  Sum_probs=91.8

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC------cccccccc
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG------GLRDGYYI  295 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~  295 (385)
                      ...++++++|.+|||||||++++....+.....++...+.....+..+  +..+.+|||||++.+.      .+...|++
T Consensus         5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   82 (188)
T 2wjg_A            5 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYII   82 (188)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC--CcEEEEEECCCcCccccccHHHHHHHHHHh
Confidence            456899999999999999999998776655544554444444455544  4678999999999885      34556665


Q ss_pred             --cCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHH
Q psy125          296 --QGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       296 --~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                        .++++++|+|.++..+...                                         |++|||++|.||+++|.+
T Consensus        83 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (188)
T 2wjg_A           83 NEKPDLVVNIVDATALERNLYLTLQLMEMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKA  162 (188)
T ss_dssp             HHCCSEEEEEEEGGGHHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHH
T ss_pred             ccCCCEEEEEecchhHHHHHHHHHHHHhcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHH
Confidence              4999999999987655433                                         899999999999999999


Q ss_pred             HHHHHhcCC
Q psy125          333 LARKLIGDP  341 (385)
Q Consensus       333 l~~~i~~~~  341 (385)
                      +++.+....
T Consensus       163 i~~~~~~~~  171 (188)
T 2wjg_A          163 ISIAVKDKK  171 (188)
T ss_dssp             HHHHHTTC-
T ss_pred             HHHHHHhcc
Confidence            999886653

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.69  E-value=2.2e-17  Score=134.45  Aligned_cols=110  Identities=22%  Similarity=0.215  Sum_probs=81.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeE--EEEEEEEeCCeeEEEEEeeCCCcccc-------Ccccccccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAGQEKF-------GGLRDGYYI  295 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~  295 (385)
                      .|++++|.+|||||++++++..+.+. ......+++  .....+..++  ..+.+|||||+..+       ...+..+++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~   78 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSA-VVADVPGVTRDLKEGVVETDR--GRFLLVDTGGLWSGDKWEKKIQEKVDRALE   78 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETT--EEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCee-eccCCCCceecceEEEEEeCC--ceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence            58999999999999999999877643 122233333  3333444444  46899999999874       333445789


Q ss_pred             cCcEEEEEEeCCChhhhhh----------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          296 QGQCAIIMFDVTSRITYKN----------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       296 ~~~~~ilv~d~~~~~s~~~----------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      .+|++|+|||++++.++..                                        |++|||++|.||+++|.+|++
T Consensus        79 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  158 (161)
T 2dyk_A           79 DAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWE  158 (161)
T ss_dssp             TCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHH
T ss_pred             hCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHHHHH
Confidence            9999999999999755543                                        799999999999999999998


Q ss_pred             HH
Q psy125          336 KL  337 (385)
Q Consensus       336 ~i  337 (385)
                      .+
T Consensus       159 ~l  160 (161)
T 2dyk_A          159 RL  160 (161)
T ss_dssp             HC
T ss_pred             hC
Confidence            75

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.69  E-value=3.3e-16  Score=147.97  Aligned_cols=154  Identities=15%  Similarity=0.147  Sum_probs=107.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCC--C---------------------------CcccccceeeeEEEEEEeCCe
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYVATLGVEVHPLVFHTNRG   56 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~--~---------------------------~~~~~~~g~t~~~~~~~~~~~   56 (385)
                      ..+.++|+++|++|+|||||+++|+....  .                           .......|+|.+.........
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            35679999999999999999999854311  0                           001123577887777777777


Q ss_pred             eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhh---hh---cHHHHHHHHHHhcCCCC-EEEEEeCCCCcch-
Q psy125           57 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRIT---YK---NVPNWHRDLVRVCENIP-IVLCGNKVDIKDR-  128 (385)
Q Consensus        57 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~---~~---~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~-  128 (385)
                      ...+.+|||||++++...+...+.++|++|+|+|+++...   +.   .....+..+ .. .+.| +++++||+|+... 
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~-~~-~~v~~iIvviNK~Dl~~~~  171 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLA-KT-AGVKHLIVLINKMDDPTVN  171 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHH-HH-cCCCeEEEEeecCCCcccc
Confidence            7899999999999988888888999999999999988642   11   111222222 12 3566 8999999998531 


Q ss_pred             ---h----hhHHHHHHHHhc------CCeEEEEcCCCCCChHHHHH
Q psy125          129 ---K----VKAKSIVFHRKK------NLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus       129 ---~----~~~~~~~~~~~~------~~~~~~~Sa~~~~gi~~l~~  161 (385)
                         .    ...+...+....      ..+++++||++|.|+.++..
T Consensus       172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence               1    122233333333      34799999999999988654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.69  E-value=3.9e-17  Score=137.35  Aligned_cols=117  Identities=16%  Similarity=0.178  Sum_probs=86.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCccc-ccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhcc----
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYV-ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ----   81 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~-~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~----   81 (385)
                      .+.++|+++|++|||||||+|+|++..+..... ..++.+       .+...+.+.+|||||...+...+..++.+    
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~  118 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA-------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF  118 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC-------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee-------eeecCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence            456899999999999999999988876543111 111111       11245678899999999887777777765    


Q ss_pred             CcEEEEEEeCC-ChhhhhcHHHHHHHHHHh-----cCCCCEEEEEeCCCCcchhh
Q psy125           82 GQCAIIMFDVT-SRITYKNVPNWHRDLVRV-----CENIPIVLCGNKVDIKDRKV  130 (385)
Q Consensus        82 ~d~illV~d~~-~~~~~~~~~~~~~~l~~~-----~~~~~~ilv~nK~Dl~~~~~  130 (385)
                      +|++++|+|++ +..++..+..|+..+...     ..+.|+++|+||+|+.....
T Consensus       119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence            89999999999 888888777777666542     24799999999999875443

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.69  E-value=7.5e-17  Score=155.01  Aligned_cols=117  Identities=17%  Similarity=0.154  Sum_probs=86.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCC--------------Ccc------cccceeeeEEEEEEeCCeeEEEEEEeCCC
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFE--------------KKY------VATLGVEVHPLVFHTNRGAIRFNVWDTAG   67 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~--------------~~~------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g   67 (385)
                      +..+|+|+|++|||||||+|+|+...-.              ...      ....|+|.........++.+.+++|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            4579999999999999999998621100              000      11245555555556666778999999999


Q ss_pred             ccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125           68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        68 ~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~  127 (385)
                      +.++......+++.+|++|+|+|+++....+....|. .+.  ..++|+++++||+|+..
T Consensus        92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~--~~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCR--LRHTPIMTFINKMDRDT  148 (528)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHH--TTTCCEEEEEECTTSCC
T ss_pred             chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHH--HcCCCEEEEEeCCCCcc
Confidence            9998888888999999999999999876665544443 222  24789999999999864

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.69  E-value=1.7e-16  Score=153.90  Aligned_cols=158  Identities=16%  Similarity=0.229  Sum_probs=109.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcC--CCC-----Cccc------ccceeeeEEEEEEe-----CCeeEEEEEEeCCCcc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTG--EFE-----KKYV------ATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQE   69 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~--~~~-----~~~~------~~~g~t~~~~~~~~-----~~~~~~~~i~Dt~g~~   69 (385)
                      +..+|+|+|+.|+|||||+++|+..  ...     ..+.      ...|.|........     ++..+.+++|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            3569999999999999999998752  111     1111      12344443221111     3446899999999999


Q ss_pred             ccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC---eEE
Q psy125           70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL---QYY  146 (385)
Q Consensus        70 ~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~  146 (385)
                      ++...+..++..+|++|+|+|+++....+....|.....   .++|+++++||+|+..........++....+.   .++
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi  161 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI  161 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence            988888888999999999999999877776666655443   58899999999999754332223334444444   489


Q ss_pred             EEcCCCCCChHHHHHHHHHHHh
Q psy125          147 DISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       147 ~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      .+||+++.|+++++..|.+.+.
T Consensus       162 ~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          162 LASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEEeecCCCchHHHHHHHHhcc
Confidence            9999999999999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.68  E-value=6.1e-17  Score=139.99  Aligned_cols=116  Identities=13%  Similarity=0.145  Sum_probs=84.7

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc------c----cCcccc
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE------K----FGGLRD  291 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~------~----~~~~~~  291 (385)
                      ...++|+++|.+|||||+|+++++.+.+...  +..+++..............+.||||||+.      +    +.. ..
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTT-IT  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence            3568999999999999999999998776522  223333322222222234678999999993      3    222 22


Q ss_pred             cccccCcEEEEEEeCCChhhhhh------------------------------------------------------hhe
Q psy125          292 GYYIQGQCAIIMFDVTSRITYKN------------------------------------------------------YYD  317 (385)
Q Consensus       292 ~~~~~~~~~ilv~d~~~~~s~~~------------------------------------------------------~~e  317 (385)
                      .++..+|++|+|||++++.+|+.                                                      |++
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            35788999999999999988652                                                      589


Q ss_pred             eccccCCCchHHHHHHHHHHhcC
Q psy125          318 ISAKSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       318 ~Sak~~~~v~~~f~~l~~~i~~~  340 (385)
                      |||++|.||+++|.+|++.+...
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~~  206 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKND  206 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.68  E-value=4.1e-16  Score=138.38  Aligned_cols=173  Identities=14%  Similarity=0.114  Sum_probs=110.4

Q ss_pred             EeCCCcc-ccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhc
Q psy125           63 WDTAGQE-KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKK  141 (385)
Q Consensus        63 ~Dt~g~~-~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~  141 (385)
                      ...||+. .........+.++|+++.|+|++++.+..+.  .+..   ...++|.++|+||+|+........+.+++...
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~--~l~~---~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~   78 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP--MIED---ILKNKPRIMLLNKADKADAAVTQQWKEHFENQ   78 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH--HHHH---HCSSSCEEEEEECGGGSCHHHHHHHHHHHHTT
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH--HHHH---HHCCCCEEEEEECcccCCHHHHHHHHHHHHhc
Confidence            3467764 3444556678999999999999998877541  1222   22689999999999998755455555666556


Q ss_pred             CCeEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCC
Q psy125          142 NLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMD  221 (385)
Q Consensus       142 ~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  221 (385)
                      +.+++.+|+.++.|+.+++..+.+.+...                             ... ..           .....
T Consensus        79 g~~~i~iSA~~~~gi~~L~~~i~~~l~~~-----------------------------~~~-~~-----------~~~~~  117 (282)
T 1puj_A           79 GIRSLSINSVNGQGLNQIVPASKEILQEK-----------------------------FDR-MR-----------AKGVK  117 (282)
T ss_dssp             TCCEEECCTTTCTTGGGHHHHHHHHHHHH-----------------------------HHH-HH-----------HTTCC
T ss_pred             CCcEEEEECCCcccHHHHHHHHHHHHHHH-----------------------------HHH-HH-----------hcCCC
Confidence            77899999999999999888777665211                             000 00           01122


Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK  285 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~  285 (385)
                      ...++++++|.+||||||++|++... ....+.+.+|+|...+.+.++.   .+.+|||||...
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  177 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGK---ELELLDTPGILW  177 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETT---TEEEEECCCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence            34589999999999999999997743 4455667788887776665543   368999999753

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.68  E-value=8.8e-17  Score=145.06  Aligned_cols=113  Identities=27%  Similarity=0.373  Sum_probs=94.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC--ccc-cccccceeeEEEEEEEEeCCeeEEEEEeeCCCcccc-----Cccccccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-----GGLRDGYY  294 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~  294 (385)
                      ..+||+++|.+|||||+|+++++.+  .+. ..+.+|++..+....  +++ .+.+.||||||++++     ..++..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~--~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLR--FLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEE--ETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEE--eCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            3589999999999999999998876  332 256677776665433  343 678999999999998     78889999


Q ss_pred             ccCcEEEEEEeCCChhhhhh-----------------------------------------------------------h
Q psy125          295 IQGQCAIIMFDVTSRITYKN-----------------------------------------------------------Y  315 (385)
Q Consensus       295 ~~~~~~ilv~d~~~~~s~~~-----------------------------------------------------------~  315 (385)
                      +++|++|+|||++++.||++                                                           |
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999998876                                                           6


Q ss_pred             heeccccCCCchHHHHHHHHHHhc
Q psy125          316 YDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       316 ~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                      ++|||++ .|+.++|..+++.+..
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EEeeecC-ChHHHHHHHHHHHHcC
Confidence            8999999 8999999999987654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.68  E-value=1.1e-16  Score=142.33  Aligned_cols=157  Identities=16%  Similarity=0.224  Sum_probs=88.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCc-c-------cccceeeeEEEEEEeCCeeEEEEEEeCCCcccc-------c
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-Y-------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF-------G   72 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~-~-------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~-------~   72 (385)
                      ..++|+|+|.+|+|||||+|+|++...... +       .++.+.+.........+..+.+.+|||||....       .
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            468999999999999999999776544332 2       344444444444444444579999999997322       1


Q ss_pred             cch-------hhhhc-------------cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh-
Q psy125           73 GLR-------DGYYI-------------QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-  131 (385)
Q Consensus        73 ~~~-------~~~~~-------------~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~-  131 (385)
                      .+.       ..++.             ++|+++++++.........-..++..+.   .+.|+++|+||+|+...... 
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~---~~~pvi~V~nK~D~~~~~e~~  163 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQ  163 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHT---TTSCEEEEESSGGGSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHh---ccCCEEEEEeccCCCCHHHHH
Confidence            111       22222             3678888887655321111122333332   38999999999998654332 


Q ss_pred             ---HHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125          132 ---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       132 ---~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                         ..+.......+.+++.+|+.++.|+++++..|...+
T Consensus       164 ~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          164 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence               233444556678899999999999999988887754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.67  E-value=4e-18  Score=163.12  Aligned_cols=156  Identities=18%  Similarity=0.183  Sum_probs=109.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCC-eeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~-~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      +.++|+++|++|+|||||+++|.+..+....  ..|+|.+........ .+..+.+|||||++.+...+..++..+|++|
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~--~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI   80 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAME--AGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQVTDIVI   80 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSS--SCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccc--CCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence            4579999999999999999998775543332  234444333333322 3457899999999999999988999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHH---Hh--cCCeEEEEcCCCCCChHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFH---RK--KNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~---~~--~~~~~~~~Sa~~~~gi~~  158 (385)
                      +|+|+++....+....| ..+.  ..+.|+++++||+|+.....   ......+.   ..  ...+++++||+++.|+++
T Consensus        81 LVVDa~dg~~~qt~e~l-~~~~--~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~e  157 (537)
T 3izy_P           81 LVVAADDGVMKQTVESI-QHAK--DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMA  157 (537)
T ss_dssp             EECBSSSCCCHHHHHHH-HHHH--TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHH
T ss_pred             EEEECCCCccHHHHHHH-HHHH--HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchh
Confidence            99999986655443322 2222  25789999999999864322   12222110   01  123789999999999999


Q ss_pred             HHHHHHHHHh
Q psy125          159 PFLWLARKLI  168 (385)
Q Consensus       159 l~~~i~~~l~  168 (385)
                      ++..|...+.
T Consensus       158 Lle~I~~l~~  167 (537)
T 3izy_P          158 LAEATIALAE  167 (537)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHhhh
Confidence            9999988763

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.67  E-value=4e-16  Score=143.35  Aligned_cols=156  Identities=17%  Similarity=0.073  Sum_probs=99.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc---------cccchhhhhcc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK---------FGGLRDGYYIQ   81 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~---------~~~~~~~~~~~   81 (385)
                      .|+|+|++|||||||+|+|.+...  .....++.|++.....+...+..+.+|||+|...         +.. ....+..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~--~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~-tl~~~~~  257 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ--KVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFV-TLSEAKY  257 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHH-HHHGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc--cccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHH-HHHHHHh
Confidence            399999999999999999877653  2234445555443333333336789999999632         111 1224678


Q ss_pred             CcEEEEEEeCCChh--hhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhhhH---HHHHHHHhc---CCeEEEEcCCC
Q psy125           82 GQCAIIMFDVTSRI--TYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKVKA---KSIVFHRKK---NLQYYDISAKS  152 (385)
Q Consensus        82 ~d~illV~d~~~~~--~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~~~---~~~~~~~~~---~~~~~~~Sa~~  152 (385)
                      +|++++|+|++++.  .......|...+... ..+.|+++|+||+|+.......   ....+....   ..+++++|+++
T Consensus       258 aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~  337 (364)
T 2qtf_A          258 SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALK  337 (364)
T ss_dssp             SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTT
T ss_pred             CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCC
Confidence            99999999998876  444444444444332 2578999999999986532111   111222332   23678999999


Q ss_pred             CCChHHHHHHHHHHHhc
Q psy125          153 NYNFEKPFLWLARKLIG  169 (385)
Q Consensus       153 ~~gi~~l~~~i~~~l~~  169 (385)
                      +.|+++++..|.+.+..
T Consensus       338 g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          338 RTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             TBSHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHhcc
Confidence            99999999999887654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.66  E-value=2.7e-16  Score=138.09  Aligned_cols=114  Identities=16%  Similarity=0.033  Sum_probs=91.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc------cccc--
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR------DGYY--  294 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~------~~~~--  294 (385)
                      ..++|+++|.+|||||||++++.+..+..  ...+|++...+...+......+.||||||+..+...+      ..|+  
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~--~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~   81 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQYV--ANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLK   81 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEEE--EECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCcc--cCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence            45899999999999999999998766543  2334556655555555445789999999999887643      4565  


Q ss_pred             ccCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHH
Q psy125          295 IQGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       295 ~~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      ..+|++|+|+|+++..+...                                         |++|||++|.||+++|.+|
T Consensus        82 ~~~d~ii~V~D~t~~~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i  161 (258)
T 3a1s_A           82 GDADLVILVADSVNPEQSLYLLLEILEMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKI  161 (258)
T ss_dssp             SCCSEEEEEEETTSCHHHHHHHHHHHTTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHH
T ss_pred             cCCCEEEEEeCCCchhhHHHHHHHHHhcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHH
Confidence            58999999999999776554                                         8999999999999999999


Q ss_pred             HHHHh
Q psy125          334 ARKLI  338 (385)
Q Consensus       334 ~~~i~  338 (385)
                      ++.+.
T Consensus       162 ~~~~~  166 (258)
T 3a1s_A          162 VEYAQ  166 (258)
T ss_dssp             HHHHH
T ss_pred             HHHhh
Confidence            99765

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.66  E-value=2.3e-15  Score=141.26  Aligned_cols=161  Identities=16%  Similarity=0.089  Sum_probs=98.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCC---CCCcccc--cceeeeEEEEEEe-------------C--C----eeEEEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGE---FEKKYVA--TLGVEVHPLVFHT-------------N--R----GAIRFNV   62 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~---~~~~~~~--~~g~t~~~~~~~~-------------~--~----~~~~~~i   62 (385)
                      .+.++|+++|+.++|||||+++|.+..   +.....+  |....+.......             .  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            457999999999999999999977432   1122112  2222221111110             0  1    1378999


Q ss_pred             EeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHH
Q psy125           63 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFH  138 (385)
Q Consensus        63 ~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~  138 (385)
                      |||||++.+...+...+..+|++|+|+|+++..........+..+ ......|+++++||+|+.....    ..++.++.
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l  164 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFV  164 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence            999999887766666778899999999999653111111222222 2224468999999999865432    23334444


Q ss_pred             Hh---cCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          139 RK---KNLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       139 ~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      ..   ...+++++||+++.|+++++..|...+.
T Consensus       165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             TTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            33   3568999999999999999999988654

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.66  E-value=4.9e-16  Score=143.22  Aligned_cols=143  Identities=8%  Similarity=0.004  Sum_probs=105.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      +|+++|++++|||||+++|+          ..|.|.+............+.+|||||++++.......+.++|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999976          34566665566667677789999999999887777778899999999999


Q ss_pred             CCChhhhhcHHHHHHHHHHhcCCCCE-EEEEe-CCCCcchhhh----HHHHHHHHhc---CCeEEE--EcCCC---CCCh
Q psy125           91 VTSRITYKNVPNWHRDLVRVCENIPI-VLCGN-KVDIKDRKVK----AKSIVFHRKK---NLQYYD--ISAKS---NYNF  156 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~~~-ilv~n-K~Dl~~~~~~----~~~~~~~~~~---~~~~~~--~Sa~~---~~gi  156 (385)
                       +... ......+...+..  .+.|. ++++| |+|+ .....    .+..++....   ..++++  +||++   +.|+
T Consensus        93 -~~g~-~~qt~e~~~~~~~--~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi  167 (370)
T 2elf_A           93 -PQGL-DAHTGECIIALDL--LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV  167 (370)
T ss_dssp             -TTCC-CHHHHHHHHHHHH--TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred             -CCCC-cHHHHHHHHHHHH--cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence             5432 2223344433332  36677 88899 9999 54321    2233333322   358999  99999   9999


Q ss_pred             HHHHHHHHHHHh
Q psy125          157 EKPFLWLARKLI  168 (385)
Q Consensus       157 ~~l~~~i~~~l~  168 (385)
                      ++++..|...+.
T Consensus       168 ~~L~~~l~~~~~  179 (370)
T 2elf_A          168 DELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc
Confidence            999999988763

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.66  E-value=5.8e-16  Score=146.42  Aligned_cols=151  Identities=19%  Similarity=0.188  Sum_probs=102.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCC--CCc----------cccc-------------------ceeeeEEEEEEeCC
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEF--EKK----------YVAT-------------------LGVEVHPLVFHTNR   55 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~--~~~----------~~~~-------------------~g~t~~~~~~~~~~   55 (385)
                      .+.++|+++|+.|+|||||+++|+.+..  ...          ...+                   .|+|.+........
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            3458999999999999999999876431  000          0011                   24455544445555


Q ss_pred             eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcch--h----
Q psy125           56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR--K----  129 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--~----  129 (385)
                      ....+.+|||||++.+...+..++.++|++|+|+|+++....+. ..++..+. .....++++|+||+|+...  .    
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt-~~~l~~~~-~~~~~~iIvviNK~Dl~~~~~~~~~~  179 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQT-RRHSYIAS-LLGIKHIVVAINKMDLNGFDERVFES  179 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHH-HHHHHHHH-HTTCCEEEEEEECTTTTTSCHHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHH-HcCCCeEEEEEEcCcCCcccHHHHHH
Confidence            67889999999999888778888999999999999998653332 23333222 2223358999999998752  1    


Q ss_pred             hhHHHHHHHHhcC-----CeEEEEcCCCCCChHHH
Q psy125          130 VKAKSIVFHRKKN-----LQYYDISAKSNYNFEKP  159 (385)
Q Consensus       130 ~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  159 (385)
                      ...+...+....+     .+++++||+++.|+.++
T Consensus       180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            1233444555555     57899999999998764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.66  E-value=6.2e-17  Score=145.88  Aligned_cols=194  Identities=11%  Similarity=0.094  Sum_probs=114.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccce----------------------eeeEE------------
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLG----------------------VEVHP------------   48 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g----------------------~t~~~------------   48 (385)
                      ...++|+|+|.+|||||||+|+|++..+.+.    ....++                      ++++.            
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i  103 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  103 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence            4567999999999999999999888765421    122232                      11110            


Q ss_pred             -----------EEEEeC-CeeEEEEEEeCCCccc-------------cccchhhhhccCcEEE-EEEeCCChhhhhcHHH
Q psy125           49 -----------LVFHTN-RGAIRFNVWDTAGQEK-------------FGGLRDGYYIQGQCAI-IMFDVTSRITYKNVPN  102 (385)
Q Consensus        49 -----------~~~~~~-~~~~~~~i~Dt~g~~~-------------~~~~~~~~~~~~d~il-lV~d~~~~~~~~~~~~  102 (385)
                                 ...... .....+.+|||||...             +..+...++.+++.++ +|+|+++.........
T Consensus       104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~  183 (299)
T 2aka_B          104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  183 (299)
T ss_dssp             CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred             cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence                       000000 0136789999999742             2234456777888776 6899987655443333


Q ss_pred             HHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHH-HHhc--C-CeEEEEcCCCCCChHHHHHHHHHHHhcCCCccccc
Q psy125          103 WHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVF-HRKK--N-LQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVA  177 (385)
Q Consensus       103 ~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~-~~~~--~-~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~  177 (385)
                      +...+..  .+.|+++|+||+|+..... ......- ....  + .+++.+||+++.|+++++..|.+...         
T Consensus       184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~---------  252 (299)
T 2aka_B          184 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK---------  252 (299)
T ss_dssp             HHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH---------
T ss_pred             HHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH---------
Confidence            4444322  4789999999999865433 1211110 0000  1 25778999999999999998877321         


Q ss_pred             CCCCCCCCCCCChhhh---hhhHHhHHHHHHhcCCCCch
Q psy125          178 MPALLPPEVTMDPQWQ---SRIEQDLKEAQETALPDDDE  213 (385)
Q Consensus       178 ~~~~~ep~~~~d~~~~---~~~~~~l~~~~~~~~~~~~~  213 (385)
                        +++......+...+   ..+.+.+++.....+..+.|
T Consensus       253 --~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP  289 (299)
T 2aka_B          253 --FFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLP  289 (299)
T ss_dssp             --HHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --HHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhH
Confidence              12122222223333   56666666666554444444

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.66  E-value=3.6e-16  Score=146.09  Aligned_cols=157  Identities=13%  Similarity=0.043  Sum_probs=110.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------cccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGE-------FEK-------KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG   73 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~-------~~~-------~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~   73 (385)
                      +.++|+++|+.|+|||||+++|+...       +..       ......|.|.+............+.+|||||++++..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            46899999999999999999987631       100       0112456666665555666678899999999998877


Q ss_pred             chhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcc-hhh----hHHHHHHHHhcC-----
Q psy125           74 LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKD-RKV----KAKSIVFHRKKN-----  142 (385)
Q Consensus        74 ~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~-~~~----~~~~~~~~~~~~-----  142 (385)
                      .+..++..+|++|+|+|+++....+....| ..+..  .+.| +++++||+|+.. ...    ..+..++....+     
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            777888999999999999986544333223 22222  4677 689999999874 211    223444554443     


Q ss_pred             CeEEEEcCCCCCC----------hHHHHHHHHHHH
Q psy125          143 LQYYDISAKSNYN----------FEKPFLWLARKL  167 (385)
Q Consensus       143 ~~~~~~Sa~~~~g----------i~~l~~~i~~~l  167 (385)
                      .+++++||+++.|          +++++..|...+
T Consensus       159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            5899999998664          677888777765

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.66  E-value=1.2e-15  Score=143.29  Aligned_cols=158  Identities=16%  Similarity=0.100  Sum_probs=104.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCC---CCCcccccceeeeEE----EEEEe-------------C--C----eeEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGE---FEKKYVATLGVEVHP----LVFHT-------------N--R----GAIRF   60 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~---~~~~~~~~~g~t~~~----~~~~~-------------~--~----~~~~~   60 (385)
                      .+.++|+++|+.++|||||+++|++..   +....  ..|+|...    .....             .  .    ....+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~--~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEEL--RRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGG--GSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhh--cCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            456899999999999999999977432   12221  22333321    11110             0  1    13789


Q ss_pred             EEEeCCCccccccchhhhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHH
Q psy125           61 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSI  135 (385)
Q Consensus        61 ~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~  135 (385)
                      .+|||||++.+.......+..+|++|+|+|+++.. ..+. ...+..+. .....|+++++||+|+.....    ..++.
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt-~e~l~~~~-~~~~~~iivviNK~Dl~~~~~~~~~~~~i~  163 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLMALQ-IIGQKNIIIAQNKIELVDKEKALENYRQIK  163 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHHHHH-HHTCCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhH-HHHHHHHH-HcCCCcEEEEEECccCCCHHHHHHHHHHHH
Confidence            99999999887776666778899999999999653 1111 12222222 224568999999999876432    22333


Q ss_pred             HHHHh---cCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          136 VFHRK---KNLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       136 ~~~~~---~~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      .+...   ...+++++||+++.|+++++..|...+.
T Consensus       164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            34332   3568999999999999999999988653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.65  E-value=1.2e-16  Score=134.38  Aligned_cols=113  Identities=13%  Similarity=0.150  Sum_probs=91.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCC----------ccccCccccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG----------QEKFGGLRDG  292 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~  292 (385)
                      ..+||+++|.+|||||||+++++.+. ...+.++.+++........+.   .+.+|||||          ++.+..+...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~   97 (195)
T 3pqc_A           22 LKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVED   97 (195)
T ss_dssp             TTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHH
Confidence            45899999999999999999998776 456677777776665554443   367999999          6667777788


Q ss_pred             ccccC---cEEEEEEeCCChhhhhh-----------------------------------------------hheecccc
Q psy125          293 YYIQG---QCAIIMFDVTSRITYKN-----------------------------------------------YYDISAKS  322 (385)
Q Consensus       293 ~~~~~---~~~ilv~d~~~~~s~~~-----------------------------------------------~~e~Sak~  322 (385)
                      |++++   +++++|+|++++.+...                                               |++|||++
T Consensus        98 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  177 (195)
T 3pqc_A           98 YFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVT  177 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTT
T ss_pred             HHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCC
Confidence            88766   99999999988654433                                               79999999


Q ss_pred             CCCchHHHHHHHHHHhc
Q psy125          323 NYNFEKPFLWLARKLIG  339 (385)
Q Consensus       323 ~~~v~~~f~~l~~~i~~  339 (385)
                      |.||+++|.+|++.+.+
T Consensus       178 ~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          178 GEGISELLDLISTLLKE  194 (195)
T ss_dssp             CTTHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHhhc
Confidence            99999999999998754

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.65  E-value=3.7e-16  Score=146.60  Aligned_cols=146  Identities=16%  Similarity=0.086  Sum_probs=104.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC--------CCCCc-------ccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTG--------EFEKK-------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~--------~~~~~-------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~   71 (385)
                      .+.++|+++|++|+|||||+++|++.        .+...       .....|.|.+............+.+|||||++++
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            46789999999999999999998763        11110       0124566766666666666788999999999988


Q ss_pred             ccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhh-----hHHHHHHHHhcC---
Q psy125           72 GGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV-----KAKSIVFHRKKN---  142 (385)
Q Consensus        72 ~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~---  142 (385)
                      ......++.++|++|+|+|+++....+. ..++..+..  .+.| +++++||+|+.....     ..+...+....+   
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~qt-~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~  165 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPG  165 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHH-HHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccc
Confidence            8778888899999999999988654332 334433332  4677 889999999874211     123334444433   


Q ss_pred             --CeEEEEcCCCCCC
Q psy125          143 --LQYYDISAKSNYN  155 (385)
Q Consensus       143 --~~~~~~Sa~~~~g  155 (385)
                        .+++++||+++.|
T Consensus       166 ~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          166 DEVPVIRGSALLALE  180 (405)
T ss_dssp             TTSCEEECCHHHHHH
T ss_pred             cCCCEEEccHHHhhh
Confidence              5899999999876

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.65  E-value=5.9e-16  Score=151.51  Aligned_cols=153  Identities=22%  Similarity=0.201  Sum_probs=105.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------------------------cccceeeeEEEEEEeCCee
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY-----------------------------VATLGVEVHPLVFHTNRGA   57 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~-----------------------------~~~~g~t~~~~~~~~~~~~   57 (385)
                      .+.++|+++|++|+|||||+|+|+........                             ....|+|++..........
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            45789999999999999999998865221110                             0125677766666666677


Q ss_pred             EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh---hh--hcHHHHHHHHHHhcCCCCEEEEEeCCCCcch--hh
Q psy125           58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI---TY--KNVPNWHRDLVRVCENIPIVLCGNKVDIKDR--KV  130 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~---~~--~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~--~~  130 (385)
                      ..+.+|||||++.+......++.++|++|+|+|+++..   ++  .........+.......++++|+||+|+...  ..
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~  324 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR  324 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence            89999999999988888888899999999999998742   11  1111222222222233459999999998752  11


Q ss_pred             ----hHHHHHHHHhc-----CCeEEEEcCCCCCChHHH
Q psy125          131 ----KAKSIVFHRKK-----NLQYYDISAKSNYNFEKP  159 (385)
Q Consensus       131 ----~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~~l  159 (385)
                          ..+...+....     ..+++++||++|.|+.++
T Consensus       325 ~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          325 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence                22222333322     358999999999999764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.64  E-value=1.7e-16  Score=140.15  Aligned_cols=112  Identities=14%  Similarity=0.098  Sum_probs=90.5

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC------cccccccc--
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG------GLRDGYYI--  295 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~------~~~~~~~~--  295 (385)
                      .++|+++|.+|||||||++++.+..+.  ....+|+++..+...+.. ...+.+|||||+..+.      .+...|+.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~--v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQR--VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCC--CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            479999999999999999998865432  233456777666666665 6678999999999886      34566776  


Q ss_pred             cCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHHHHH
Q psy125          296 QGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       296 ~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      ++|++|+|||+++..++..                                         +++|||++|.||+++|.+|+
T Consensus        80 ~~d~vi~V~D~t~~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~  159 (272)
T 3b1v_A           80 RADSILNVVDATNLERNLYLTTQLIETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAA  159 (272)
T ss_dssp             CCSEEEEEEEGGGHHHHHHHHHHHHHTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHH
T ss_pred             CCCEEEEEecCCchHhHHHHHHHHHhcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHH
Confidence            6999999999999876544                                         79999999999999999999


Q ss_pred             HHHh
Q psy125          335 RKLI  338 (385)
Q Consensus       335 ~~i~  338 (385)
                      +.+.
T Consensus       160 ~~~~  163 (272)
T 3b1v_A          160 HTTT  163 (272)
T ss_dssp             HSCT
T ss_pred             HHHh
Confidence            8653

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.64  E-value=1.7e-15  Score=139.65  Aligned_cols=176  Identities=16%  Similarity=0.139  Sum_probs=121.7

Q ss_pred             ccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----h-HHHHHHHHhcC
Q psy125           68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----K-AKSIVFHRKKN  142 (385)
Q Consensus        68 ~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~-~~~~~~~~~~~  142 (385)
                      .+.+++....+.+.++++++|+|++++.     ..|...+.+...+.|+++|+||+|+.....    . .....++...+
T Consensus        56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g  130 (368)
T 3h2y_A           56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG  130 (368)
T ss_dssp             CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence            4567777788888999999999999864     245445555556899999999999865432    1 11222345555


Q ss_pred             C---eEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhc
Q psy125          143 L---QYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAE  219 (385)
Q Consensus       143 ~---~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  219 (385)
                      .   .++.+||+++.|+++++..|.+...                                                   
T Consensus       131 ~~~~~v~~iSA~~g~gi~~L~~~l~~~~~---------------------------------------------------  159 (368)
T 3h2y_A          131 LKPEDVFLISAAKGQGIAELADAIEYYRG---------------------------------------------------  159 (368)
T ss_dssp             CCCSEEEECCTTTCTTHHHHHHHHHHHHT---------------------------------------------------
T ss_pred             CCcccEEEEeCCCCcCHHHHHhhhhhhcc---------------------------------------------------
Confidence            5   7899999999999999888766431                                                   


Q ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCc-----cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc--
Q psy125          220 MDMPSFKCVLVGDGGTGKTTFVKRHLTGE-----FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG--  292 (385)
Q Consensus       220 ~~~~~~~i~~~G~~~vgks~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--  292 (385)
                          ..+++++|.+||||||++|+++...     .....++.+|+|.....+.+...   +.++||||......+...  
T Consensus       160 ----~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~  232 (368)
T 3h2y_A          160 ----GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVG  232 (368)
T ss_dssp             ----TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSC
T ss_pred             ----cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhh
Confidence                1369999999999999999977542     12335667788887777776654   689999998554332221  


Q ss_pred             ------c--cccCcEEEEEEeC
Q psy125          293 ------Y--YIQGQCAIIMFDV  306 (385)
Q Consensus       293 ------~--~~~~~~~ilv~d~  306 (385)
                            +  ....+..+++.+.
T Consensus       233 ~~~l~~~~~~~~i~~~~~~l~~  254 (368)
T 3h2y_A          233 KQSLKLITPTKEIKPMVFQLNE  254 (368)
T ss_dssp             HHHHHHHSCSSCCCCEEEEECT
T ss_pred             HHHHHHhccccccCceEEEEcC
Confidence                  1  2466777777766

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.64  E-value=2.9e-16  Score=148.50  Aligned_cols=152  Identities=19%  Similarity=0.247  Sum_probs=100.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC--CCCCcc---------------------------cccceeeeEEEEEEeCCee
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------VATLGVEVHPLVFHTNRGA   57 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~--~~~~~~---------------------------~~~~g~t~~~~~~~~~~~~   57 (385)
                      .+.++|+++|+.|+|||||+++|+..  .+....                           ....|.|.+..........
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            46789999999999999999998764  221110                           0134566666555666677


Q ss_pred             EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHH------HHHHHHhcCCCCEEEEEeCCCCcch---
Q psy125           58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNW------HRDLVRVCENIPIVLCGNKVDIKDR---  128 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~------~~~l~~~~~~~~~ilv~nK~Dl~~~---  128 (385)
                      ..+.+|||||+.++...+..++.++|++|+|+|+++ .+|+....|      ...+.......++++++||+|+...   
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~  162 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD  162 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence            889999999999988888888999999999999998 444432211      1111122233468999999998751   


Q ss_pred             -----hhhHHHHHHHHhcC-----CeEEEEcCCCCCChHHH
Q psy125          129 -----KVKAKSIVFHRKKN-----LQYYDISAKSNYNFEKP  159 (385)
Q Consensus       129 -----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~l  159 (385)
                           ....+...+....+     .+++++||+++.|+.++
T Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~  203 (435)
T 1jny_A          163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK  203 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence                 11233444555444     57999999999998644

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.64  E-value=4.8e-16  Score=140.25  Aligned_cols=120  Identities=17%  Similarity=0.129  Sum_probs=95.3

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCe-eEEEEEeeCCCccccC----------ccc
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKFG----------GLR  290 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~Dt~G~~~~~----------~~~  290 (385)
                      .+...|+++|.+|||||||++++++..+. ...+.+++|+.......... ...+.+|||||+..+.          ...
T Consensus         8 ~~~g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~   86 (308)
T 3iev_A            8 MKVGYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIA   86 (308)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHH
Confidence            35678999999999999999999876654 34555666665554444434 6778999999997655          455


Q ss_pred             ccccccCcEEEEEEeCCChhhhhh-----------------------------------------------hheeccccC
Q psy125          291 DGYYIQGQCAIIMFDVTSRITYKN-----------------------------------------------YYDISAKSN  323 (385)
Q Consensus       291 ~~~~~~~~~~ilv~d~~~~~s~~~-----------------------------------------------~~e~Sak~~  323 (385)
                      ..+++++|++|+|+|++++.++++                                               +++|||++|
T Consensus        87 ~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g  166 (308)
T 3iev_A           87 KQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKG  166 (308)
T ss_dssp             HHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTT
T ss_pred             HHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCC
Confidence            568899999999999999876554                                               789999999


Q ss_pred             CCchHHHHHHHHHHhcCCC
Q psy125          324 YNFEKPFLWLARKLIGDPN  342 (385)
Q Consensus       324 ~~v~~~f~~l~~~i~~~~~  342 (385)
                      .||+++|.+|++.+...+.
T Consensus       167 ~gv~~L~~~l~~~l~~~~~  185 (308)
T 3iev_A          167 ANLDELVKTILKYLPEGEP  185 (308)
T ss_dssp             BSHHHHHHHHHHHSCBCCC
T ss_pred             CCHHHHHHHHHHhCccCCC
Confidence            9999999999999866544

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.63  E-value=1.6e-15  Score=129.24  Aligned_cols=156  Identities=13%  Similarity=0.032  Sum_probs=95.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc----------ccchhh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF----------GGLRDG   77 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~----------~~~~~~   77 (385)
                      +..+|+|+|++|||||||+|+|++..+...+.++.|.++.........   .+.+|||||....          ......
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            457999999999999999999777665566677888777654443332   4678999997421          111222


Q ss_pred             hh---ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHHhc--CCeEEEE
Q psy125           78 YY---IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHRKK--NLQYYDI  148 (385)
Q Consensus        78 ~~---~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~~--~~~~~~~  148 (385)
                      ++   ..++++++|+|+....+.... .....+.  ..+.|+++++||+|+.....    ......+....  ...++++
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~--~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAV--DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETF  178 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHH--HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEEC
T ss_pred             HHHhhhcccEEEEEEECCCCCchhHH-HHHHHHH--HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEE
Confidence            33   467899999999876543211 1111121  25789999999999865322    12233333333  2467899


Q ss_pred             cCCCCCChHHHHHHHHHHHhc
Q psy125          149 SAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      |++++.|+++++..|.+.+..
T Consensus       179 Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          179 SSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             BTTTTBSHHHHHHHHHHHHC-
T ss_pred             eecCCCCHHHHHHHHHHHHhh
Confidence            999999999999999887644

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.63  E-value=4.2e-15  Score=133.43  Aligned_cols=117  Identities=20%  Similarity=0.208  Sum_probs=94.0

Q ss_pred             ccccccchhhhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHHhcCC
Q psy125           68 QEKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNL  143 (385)
Q Consensus        68 ~~~~~~~~~~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~  143 (385)
                      ++++..+.+.++.++|++++|+|++++. ++..+..|+..+..  .++|+++|+||+|+.+...   ..+...++...+.
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~  143 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY  143 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence            4566667778899999999999999885 77777888876654  6899999999999976542   3445556666788


Q ss_pred             eEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCC
Q psy125          144 QYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMP  223 (385)
Q Consensus       144 ~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  223 (385)
                      +++++||+++.|+++++..+..                                                          
T Consensus       144 ~~~~~SA~~g~gi~~L~~~l~G----------------------------------------------------------  165 (302)
T 2yv5_A          144 DVLKVSAKTGEGIDELVDYLEG----------------------------------------------------------  165 (302)
T ss_dssp             EEEECCTTTCTTHHHHHHHTTT----------------------------------------------------------
T ss_pred             eEEEEECCCCCCHHHHHhhccC----------------------------------------------------------
Confidence            9999999999999987764321                                                          


Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~  245 (385)
                       ..++++|++|+|||||++.+.
T Consensus       166 -~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 -FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHH
T ss_pred             -cEEEEECCCCCCHHHHHHHHH
Confidence             247899999999999999976

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.63  E-value=3e-16  Score=144.44  Aligned_cols=157  Identities=17%  Similarity=0.279  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCC-ccc--------ccceeeeEEEEEEeCCeeEEEEEEeCCCc-------cccc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYV--------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQ-------EKFG   72 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~--------~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~-------~~~~   72 (385)
                      .++|+|+|++|+|||||+|+|++..... .+.        ++.+..............+.+.+|||||.       +.+.
T Consensus        37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~  116 (361)
T 2qag_A           37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK  116 (361)
T ss_dssp             EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred             CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence            5899999999999999999976643322 211        23333222222233344568999999998       5555


Q ss_pred             cchh-------hhhccCcEE-----------EEEEeCCC-hhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhhh-
Q psy125           73 GLRD-------GYYIQGQCA-----------IIMFDVTS-RITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVK-  131 (385)
Q Consensus        73 ~~~~-------~~~~~~d~i-----------llV~d~~~-~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~-  131 (385)
                      .+..       .++.+++++           ++||++++ ..++..+. .++..+   ..+.|+++|+||+|+...... 
T Consensus       117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~ev~  193 (361)
T 2qag_A          117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKERE  193 (361)
T ss_dssp             CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHHHH
Confidence            5554       455443322           35555554 34455444 233332   367899999999998765432 


Q ss_pred             ---HHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          132 ---AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       132 ---~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                         .....+....+.+++++||+++.+ ++.+..+.+.+..
T Consensus       194 ~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          194 RLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             HHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence               234445555677899999999988 7777777776654

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.63  E-value=1.6e-16  Score=154.47  Aligned_cols=121  Identities=21%  Similarity=0.327  Sum_probs=89.5

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEE------EEe--CCeeEEEEEeeCCCccccCcccccc
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV------FHT--NRGAIRFNVWDTAGQEKFGGLRDGY  293 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--~~~~~~l~i~Dt~G~~~~~~~~~~~  293 (385)
                      ...+||+++|.+|||||||++++..+.|...+.+|+|.+..++.      +.+  ++..+.+.+|||||++.+..+...+
T Consensus        39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~  118 (535)
T 3dpu_A           39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFF  118 (535)
T ss_dssp             CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHH
Confidence            45799999999999999999999999998889999988877653      222  2346789999999999999999999


Q ss_pred             cccCcEEEEEEeCCChhhhhh--------------------------------------------hheeccccCCCchHH
Q psy125          294 YIQGQCAIIMFDVTSRITYKN--------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       294 ~~~~~~~ilv~d~~~~~s~~~--------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      ++.++++|+|||+++......                                            |++|||++|.||+++
T Consensus       119 l~~~d~ii~V~D~s~~~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL  198 (535)
T 3dpu_A          119 MTRSSVYMLLLDSRTDSNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESI  198 (535)
T ss_dssp             HHSSEEEEEEECGGGGGGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTH
T ss_pred             ccCCcEEEEEEeCCCchhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHH
Confidence            999999999999987755444                                            899999999999999


Q ss_pred             HHHHHHHHhcCCC
Q psy125          330 FLWLARKLIGDPN  342 (385)
Q Consensus       330 f~~l~~~i~~~~~  342 (385)
                      |.+|++.+.....
T Consensus       199 ~~~l~~~~~~~~~  211 (535)
T 3dpu_A          199 AKSLKSAVLHPDS  211 (535)
T ss_dssp             HHHHHHHHTCTTS
T ss_pred             HHHHHHHHhcccc
Confidence            9999999876543

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.63  E-value=1.9e-15  Score=146.94  Aligned_cols=160  Identities=18%  Similarity=0.154  Sum_probs=104.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCC----cccccceeeeEEEEE------------EeCCeeEEEEEEeCCCcc
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEK----KYVATLGVEVHPLVF------------HTNRGAIRFNVWDTAGQE   69 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~----~~~~~~g~t~~~~~~------------~~~~~~~~~~i~Dt~g~~   69 (385)
                      .++.++|+++|+.|+|||||+++|++.....    ...++.|.+......            ..+.....+++|||||+.
T Consensus         2 ~~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            2 KIRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             EECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            3467899999999999999999987643322    112233322211100            000112258999999999


Q ss_pred             ccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh------------------h
Q psy125           70 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------------K  131 (385)
Q Consensus        70 ~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~------------------~  131 (385)
                      .+...+..++..+|++|+|+|+++....+....|. .+..  .+.|+++++||+|+.....                  .
T Consensus        82 ~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~-~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~  158 (594)
T 1g7s_A           82 AFTTLRKRGGALADLAILIVDINEGFKPQTQEALN-ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQ  158 (594)
T ss_dssp             CCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH-HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHH
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH-HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHHHH
Confidence            99888888889999999999999832222222221 2222  5789999999999853210                  0


Q ss_pred             H-------HHHHHHHhc---------------CCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          132 A-------KSIVFHRKK---------------NLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       132 ~-------~~~~~~~~~---------------~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      .       +........               ..+++++||+++.|+++++.+|...+.
T Consensus       159 ~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          159 QKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence            0       111111111               127899999999999999999988764

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.62  E-value=1.1e-15  Score=133.99  Aligned_cols=110  Identities=16%  Similarity=0.107  Sum_probs=86.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc----------cccccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----------LRDGYY  294 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----------~~~~~~  294 (385)
                      .+|+++|.+|||||||++++.+..+.....++...+.....+...+  ..+.||||||+..+..          +...|+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~--~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE--HLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT--EEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC--eEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            3799999999999999999887655433333333334444444444  4789999999988875          445567


Q ss_pred             --ccCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHHH
Q psy125          295 --IQGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       295 --~~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                        +++|++|+|+|+++..++..                                         +++|||++|.||+++|.
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~  159 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQ  159 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHH
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHH
Confidence              89999999999999887766                                         89999999999999999


Q ss_pred             HHHHH
Q psy125          332 WLARK  336 (385)
Q Consensus       332 ~l~~~  336 (385)
                      +|++.
T Consensus       160 ~i~~~  164 (256)
T 3iby_A          160 SLLHC  164 (256)
T ss_dssp             HHHTC
T ss_pred             HHHhh
Confidence            99886

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.62  E-value=5.4e-16  Score=147.19  Aligned_cols=115  Identities=16%  Similarity=0.097  Sum_probs=72.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc--------cccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR--------DGYY  294 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~  294 (385)
                      ..++|+++|.+|||||||+|+++.... ......+|++.......+...++.+.||||||++.+...+        ..++
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            358999999999999999999876542 2334455566555433333334678999999998766443        3478


Q ss_pred             ccCcEEEEEEeCCChhhhh----h---------------------------------------hheeccccCCCchHHHH
Q psy125          295 IQGQCAIIMFDVTSRITYK----N---------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       295 ~~~~~~ilv~d~~~~~s~~----~---------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      +++|++|+|||++++.+++    .                                       +++|||++|.||+++|.
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~  390 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQ  390 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHH
Confidence            9999999999999998883    1                                       48899999999999999


Q ss_pred             HHHHHHh
Q psy125          332 WLARKLI  338 (385)
Q Consensus       332 ~l~~~i~  338 (385)
                      +|.+.+.
T Consensus       391 ~i~~~~~  397 (476)
T 3gee_A          391 HMGDLVK  397 (476)
T ss_dssp             HHTHHHH
T ss_pred             HHHHHHh
Confidence            9999886

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.61  E-value=2.3e-16  Score=135.81  Aligned_cols=118  Identities=16%  Similarity=0.093  Sum_probs=91.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCc----------cccCcccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQ----------EKFGGLRD  291 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~----------~~~~~~~~  291 (385)
                      ...+|+++|.+|||||||+++++...+......++|++.......+. .....+.||||||.          +.+..+..
T Consensus        28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  107 (223)
T 4dhe_A           28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS  107 (223)
T ss_dssp             CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence            46899999999999999999998776555666677777766655555 44567899999994          34455556


Q ss_pred             ccccc---CcEEEEEEeCCChhhhhh-----------------------------------------------------h
Q psy125          292 GYYIQ---GQCAIIMFDVTSRITYKN-----------------------------------------------------Y  315 (385)
Q Consensus       292 ~~~~~---~~~~ilv~d~~~~~s~~~-----------------------------------------------------~  315 (385)
                      .|++.   +|++|+|+|++++.+..+                                                     |
T Consensus       108 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  187 (223)
T 4dhe_A          108 SYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTV  187 (223)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEE
T ss_pred             HHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeE
Confidence            67665   888999999998644333                                                     4


Q ss_pred             heeccccCCCchHHHHHHHHHHhcC
Q psy125          316 YDISAKSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       316 ~e~Sak~~~~v~~~f~~l~~~i~~~  340 (385)
                      ++|||++|.||+++|.+|.+.+...
T Consensus       188 ~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          188 QLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             EEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             EEeecCCCcCHHHHHHHHHHhcCcc
Confidence            7899999999999999999988554

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.61  E-value=6.7e-16  Score=146.67  Aligned_cols=150  Identities=15%  Similarity=0.178  Sum_probs=102.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC--CCCCc---------------------------ccccceeeeEEEEEEeCCee
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YVATLGVEVHPLVFHTNRGA   57 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~--~~~~~---------------------------~~~~~g~t~~~~~~~~~~~~   57 (385)
                      ++.++|+++|++|+|||||+++|+..  .+...                           .....|+|.+..........
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            46799999999999999999998763  11110                           00124566655555556667


Q ss_pred             EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh---hhh---cHHHHHHHHHHhcCCCC-EEEEEeCCCCcc--h
Q psy125           58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI---TYK---NVPNWHRDLVRVCENIP-IVLCGNKVDIKD--R  128 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~---~~~---~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~--~  128 (385)
                      ..+.+|||||+..+...+..++.++|++|+|+|+++..   +|+   ........+ .. .+.| +++++||+|+..  .
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~-~~-~~v~~iivviNK~Dl~~~~~  162 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLA-FT-LGVRQLIVAVNKMDSVKWDE  162 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHH-HH-TTCCEEEEEEECGGGGTTCH
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHH-HH-cCCCeEEEEEEccccccCCH
Confidence            88999999999988888888889999999999999763   231   111222222 22 3555 899999999863  2


Q ss_pred             h----hhHHHHHHHHhcC-----CeEEEEcCCCCCChHH
Q psy125          129 K----VKAKSIVFHRKKN-----LQYYDISAKSNYNFEK  158 (385)
Q Consensus       129 ~----~~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~~  158 (385)
                      .    ...+...+....+     .+++++||+++.|+.+
T Consensus       163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~  201 (458)
T 1f60_A          163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  201 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCccc
Confidence            1    1223333444333     5899999999999864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.61  E-value=9.2e-17  Score=134.55  Aligned_cols=111  Identities=15%  Similarity=0.110  Sum_probs=89.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCC-----------ccccCcccccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG-----------QEKFGGLRDGY  293 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G-----------~~~~~~~~~~~  293 (385)
                      +||+++|.+|||||||+++++.+.+...+.++  +++....+...    .+.+|||||           ++.+..++..|
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPG--VTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTT--CTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCCC--ccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            68999999999999999999988877666554  34444444443    478999999           67777778888


Q ss_pred             ccc-CcEEEEEEeCCChhhhhh-------------------------------------------------------h--
Q psy125          294 YIQ-GQCAIIMFDVTSRITYKN-------------------------------------------------------Y--  315 (385)
Q Consensus       294 ~~~-~~~~ilv~d~~~~~s~~~-------------------------------------------------------~--  315 (385)
                      +++ ++++++||+++|+.+|++                                                       |  
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~  155 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSE  155 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGG
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhc
Confidence            887 888888888888877621                                                       2  


Q ss_pred             -----heeccccCCCchHHHHHHHHHHhcCC
Q psy125          316 -----YDISAKSNYNFEKPFLWLARKLIGDP  341 (385)
Q Consensus       316 -----~e~Sak~~~~v~~~f~~l~~~i~~~~  341 (385)
                           ++|||++|.||+++|.+|++.+.+..
T Consensus       156 ~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          156 IDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             HHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             cCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence                 89999999999999999999987653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.61  E-value=4.2e-16  Score=148.40  Aligned_cols=154  Identities=18%  Similarity=0.176  Sum_probs=87.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------cc------cccceeeeEEEEEEeCCee
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLT--GEFEK---------------------KY------VATLGVEVHPLVFHTNRGA   57 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~--~~~~~---------------------~~------~~~~g~t~~~~~~~~~~~~   57 (385)
                      .+.++|+++|+.++|||||+++|+.  +.+..                     ..      ....|.|.+.....+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            3468999999999999999999864  22110                     00      0123555554433444456


Q ss_pred             EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh---hhhcHHHHHHHHHH-hcCCCC-EEEEEeCCCCcch----
Q psy125           58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI---TYKNVPNWHRDLVR-VCENIP-IVLCGNKVDIKDR----  128 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~---~~~~~~~~~~~l~~-~~~~~~-~ilv~nK~Dl~~~----  128 (385)
                      ..+.+|||||++.+...+...+.++|++|+|+|+++..   +|+....+...+.. ...++| +++++||+|+...    
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~  200 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE  200 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence            88999999999999888888889999999999999863   33321112111111 124676 9999999998531    


Q ss_pred             h----hhHHHHHHHHhc-------CCeEEEEcCCCCCChHHHH
Q psy125          129 K----VKAKSIVFHRKK-------NLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus       129 ~----~~~~~~~~~~~~-------~~~~~~~Sa~~~~gi~~l~  160 (385)
                      .    ...+...+....       ..+++++||+++.|+.+++
T Consensus       201 ~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          201 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            1    122334444433       3469999999999987543

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.61  E-value=7.9e-17  Score=152.92  Aligned_cols=153  Identities=14%  Similarity=0.192  Sum_probs=106.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.++|+++|+.++|||||+++|.........  ..|+|.+.........+..+.+|||||++.+...+...+..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            5679999999999999999998765433221  23344333333344445678999999999998888888999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHH--H-HHHhc--CCeEEEEcCCCCCChHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSI--V-FHRKK--NLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~--~-~~~~~--~~~~~~~Sa~~~~gi~~l  159 (385)
                      |+|+++....+....+ ..+.  ..+.|+++++||+|+.....   .....  . +....  ..+++++||+++.|++++
T Consensus        81 VVda~~g~~~qT~e~l-~~~~--~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL  157 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI-QHAK--AAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL  157 (501)
T ss_dssp             EEETTTBSCTTTHHHH-HHHH--HTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred             EeecccCccHHHHHHH-HHHH--hcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence            9999886544433333 2222  25789999999999864211   11000  0 00111  258999999999999999


Q ss_pred             HHHHHH
Q psy125          160 FLWLAR  165 (385)
Q Consensus       160 ~~~i~~  165 (385)
                      +..|..
T Consensus       158 le~I~~  163 (501)
T 1zo1_I          158 LDAILL  163 (501)
T ss_dssp             HHHTTT
T ss_pred             hhhhhh
Confidence            988754

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.61  E-value=2.5e-16  Score=146.29  Aligned_cols=83  Identities=22%  Similarity=0.173  Sum_probs=47.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEe-----------------------CC-eeEEEEEEeC
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-----------------------NR-GAIRFNVWDT   65 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~-----------------------~~-~~~~~~i~Dt   65 (385)
                      ++|+|+|.+|||||||+|+|++..  ....+.+++|+.......                       +. ..+.+.+|||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            589999999999999999977755  333444555544333211                       11 2578999999


Q ss_pred             CCcccc----ccchh---hhhccCcEEEEEEeCCCh
Q psy125           66 AGQEKF----GGLRD---GYYIQGQCAIIMFDVTSR   94 (385)
Q Consensus        66 ~g~~~~----~~~~~---~~~~~~d~illV~d~~~~   94 (385)
                      ||+...    ..+..   .+++++|++++|+|+++.
T Consensus        79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            998532    22222   356899999999999874

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.61  E-value=3.7e-15  Score=137.48  Aligned_cols=177  Identities=17%  Similarity=0.144  Sum_probs=123.7

Q ss_pred             ccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-----hHHHHHHHHhcC
Q psy125           68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-----KAKSIVFHRKKN  142 (385)
Q Consensus        68 ~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~  142 (385)
                      ++.+++....++..++++++|+|++++.+     .|...+.+...+.|+++|+||+|+.....     ......++...+
T Consensus        58 ~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g  132 (369)
T 3ec1_A           58 DDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELG  132 (369)
T ss_dssp             -CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcC
Confidence            56777778888899999999999999764     23333333346889999999999865432     111222344455


Q ss_pred             C---eEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhc
Q psy125          143 L---QYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAE  219 (385)
Q Consensus       143 ~---~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  219 (385)
                      .   .++.+||+++.|+++++..+.+...                                                   
T Consensus       133 ~~~~~v~~iSA~~g~gi~~L~~~I~~~~~---------------------------------------------------  161 (369)
T 3ec1_A          133 LCPVDVCLVSAAKGIGMAKVMEAINRYRE---------------------------------------------------  161 (369)
T ss_dssp             CCCSEEEECBTTTTBTHHHHHHHHHHHHT---------------------------------------------------
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHhhcc---------------------------------------------------
Confidence            4   7899999999999998888766531                                                   


Q ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcC----ccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc---
Q psy125          220 MDMPSFKCVLVGDGGTGKTTFVKRHLTG----EFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG---  292 (385)
Q Consensus       220 ~~~~~~~i~~~G~~~vgks~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---  292 (385)
                          ..+++++|.+||||||++|.++..    .-.......+|+|.....+.++..   +.++||||......+...   
T Consensus       162 ----~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~  234 (369)
T 3ec1_A          162 ----GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDA  234 (369)
T ss_dssp             ----TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCT
T ss_pred             ----cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhH
Confidence                136999999999999999997753    112334556677877777766644   689999997544322221   


Q ss_pred             ----cc---ccCcEEEEEEeCC
Q psy125          293 ----YY---IQGQCAIIMFDVT  307 (385)
Q Consensus       293 ----~~---~~~~~~ilv~d~~  307 (385)
                          ++   ...++++++.+..
T Consensus       235 ~~l~~~~~~~~i~~~~~~l~~~  256 (369)
T 3ec1_A          235 RDLKIITPKREIHPRVYQLNEG  256 (369)
T ss_dssp             TTHHHHSCSSCCCCEEEEECTT
T ss_pred             HHHHHHhcccccCceEEEEcCC
Confidence                12   5778888888873

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.60  E-value=2.4e-16  Score=153.80  Aligned_cols=150  Identities=20%  Similarity=0.203  Sum_probs=80.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCC--C---------------------------CcccccceeeeEEEEEEeCCee
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYVATLGVEVHPLVFHTNRGA   57 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~--~---------------------------~~~~~~~g~t~~~~~~~~~~~~   57 (385)
                      .+.++|+++|++|+|||||+++|+....  .                           .......|+|++.....+....
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~  254 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK  254 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence            4568999999999999999999864210  0                           0001245777777777777777


Q ss_pred             EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChh---hh--hcHHHHHHHHHHhcCCCC-EEEEEeCCCCcc--hh
Q psy125           58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI---TY--KNVPNWHRDLVRVCENIP-IVLCGNKVDIKD--RK  129 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~---~~--~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~--~~  129 (385)
                      ..+.+|||||+..+...+...+.++|++|+|+|+++..   ++  .........+... .++| +++|+||+|+..  ..
T Consensus       255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip~iIvviNKiDl~~~~~~  333 (592)
T 3mca_A          255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGISEIVVSVNKLDLMSWSED  333 (592)
T ss_dssp             ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCCCEEEEEECGGGGTTCHH
T ss_pred             eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCCeEEEEEeccccccccHH
Confidence            89999999999998888888889999999999998643   22  1111222222222 3555 899999999864  21


Q ss_pred             h----hHHHHHHH-HhcCC-----eEEEEcCCCCCChH
Q psy125          130 V----KAKSIVFH-RKKNL-----QYYDISAKSNYNFE  157 (385)
Q Consensus       130 ~----~~~~~~~~-~~~~~-----~~~~~Sa~~~~gi~  157 (385)
                      .    ..++..+. ...+.     +++++||++|.|+.
T Consensus       334 ~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          334 RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            1    22233333 22333     68999999999997

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.60  E-value=3.9e-15  Score=135.84  Aligned_cols=114  Identities=14%  Similarity=0.131  Sum_probs=91.0

Q ss_pred             eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCCh----------hhhhcHHHHHHHHHH--hcCCCCEEEEEeCC
Q psy125           56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR----------ITYKNVPNWHRDLVR--VCENIPIVLCGNKV  123 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~----------~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~  123 (385)
                      +.+.+.+|||+|++.++..+..++.+++++|+|+|+++.          .++.+...|+..+..  ...+.|+++++||+
T Consensus       191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence            468899999999999999999999999999999999994          456666677777665  23679999999999


Q ss_pred             CCcchh-----------------hhHHHHHHHH-----------hcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          124 DIKDRK-----------------VKAKSIVFHR-----------KKNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       124 Dl~~~~-----------------~~~~~~~~~~-----------~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      |+...+                 ...+...+..           .....++++||+++.|+.+.|.++++.+..
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            985432                 1233444443           245578999999999999999999988754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.60  E-value=6.4e-16  Score=137.07  Aligned_cols=115  Identities=15%  Similarity=0.095  Sum_probs=87.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc----------ccc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR----------DGY  293 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----------~~~  293 (385)
                      .++|+++|.+|||||||++++++..+...  ..+|++.......+......+.+|||||+..+....          ..|
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~--~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVG--NWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEEE--ECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            58999999999999999999987765333  333444444433333334467899999998877432          223


Q ss_pred             c--ccCcEEEEEEeCCChhhhhh-----------------------------------------hheeccccCCCchHHH
Q psy125          294 Y--IQGQCAIIMFDVTSRITYKN-----------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       294 ~--~~~~~~ilv~d~~~~~s~~~-----------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      +  +.+|++|+|+|+++..++..                                         +++|||++|.||+++|
T Consensus        81 ~~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~  160 (274)
T 3i8s_A           81 ILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK  160 (274)
T ss_dssp             HHHTCCSEEEEEEEGGGHHHHHHHHHHHHHHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHH
T ss_pred             HhhcCCCEEEEEecCCChHHHHHHHHHHHhcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence            3  79999999999999877655                                         7999999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      .+|++.+...
T Consensus       161 ~~i~~~~~~~  170 (274)
T 3i8s_A          161 LAIDRYKANE  170 (274)
T ss_dssp             HHHHTCCCCC
T ss_pred             HHHHHHHhcC
Confidence            9999877554

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.60  E-value=3.8e-15  Score=151.27  Aligned_cols=158  Identities=15%  Similarity=0.052  Sum_probs=107.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------cccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGE-------FEK-------KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG   72 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~-------~~~-------~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~   72 (385)
                      .+.++|+++|+.++|||||+++|++..       +..       ....+.|+|.+............+.+|||||++++.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            567999999999999999999987631       000       112356666665555556667889999999999888


Q ss_pred             cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcchhh-----hHHHHHHHHhcC----
Q psy125           73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKDRKV-----KAKSIVFHRKKN----  142 (385)
Q Consensus        73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~----  142 (385)
                      ..+...+.++|++|+|+|+++....+. ..++..+..  .++| +++++||+|+.....     ..+...+....+    
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~--lgIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~  450 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQ--VGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGD  450 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHH--HTCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHH--cCCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccccc
Confidence            777788899999999999998754443 334333332  3677 789999999974221     223444444443    


Q ss_pred             -CeEEEEcCCCC--------CChHHHHHHHHHHH
Q psy125          143 -LQYYDISAKSN--------YNFEKPFLWLARKL  167 (385)
Q Consensus       143 -~~~~~~Sa~~~--------~gi~~l~~~i~~~l  167 (385)
                       .+++++||+++        .|+.+++..|...+
T Consensus       451 ~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          451 DTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             ceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence             58999999998        45777777777654

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.59  E-value=7.9e-15  Score=145.30  Aligned_cols=123  Identities=20%  Similarity=0.156  Sum_probs=85.1

Q ss_pred             CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----c---------cc---cceeeeEEEEEEeCCeeEEEEEEe
Q psy125            1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----Y---------VA---TLGVEVHPLVFHTNRGAIRFNVWD   64 (385)
Q Consensus         1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~---------~~---~~g~t~~~~~~~~~~~~~~~~i~D   64 (385)
                      |.+..-.+..+|+|+|++|+|||||+++|++......    +         .+   ..++++........+..+.+++||
T Consensus         1 ~~s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD   80 (665)
T 2dy1_A            1 MGTEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD   80 (665)
T ss_dssp             -----CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred             CCCCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence            3333334567999999999999999999884322100    0         00   224455555555555678999999


Q ss_pred             CCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125           65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK  126 (385)
Q Consensus        65 t~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~  126 (385)
                      |||+.++......++..+|++++|+|+.+....+.. .++..+..  .+.|+++++||+|+.
T Consensus        81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~--~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER--LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred             CCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH--ccCCEEEEecCCchh
Confidence            999998888888889999999999998876544332 33333332  478999999999986

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.58  E-value=1.9e-14  Score=133.89  Aligned_cols=158  Identities=16%  Similarity=0.114  Sum_probs=106.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCe-eEEEEEEeCCCcccc----ccchhh---hhccC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG-AIRFNVWDTAGQEKF----GGLRDG---YYIQG   82 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~-~~~~~i~Dt~g~~~~----~~~~~~---~~~~~   82 (385)
                      .|+|+|++|||||||+++|.+...  ........|.......+... ...+.++|+||....    ..+...   .+..+
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~--~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCC--EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCc--cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            589999999999999999766432  11122222333222222222 367889999997431    222222   23579


Q ss_pred             cEEEEEEeCCChhhhhcHHHHHHHHHHh---cCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHH
Q psy125           83 QCAIIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~~~~~~l~~~---~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +.+++|+|++ ...+..+..+..++...   ....|.++++||+|+........+.......+..++.+||+++.|++++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL  315 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPAL  315 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence            9999999997 44455555555554432   2368999999999987653333444455555678999999999999999


Q ss_pred             HHHHHHHHhcCC
Q psy125          160 FLWLARKLIGDP  171 (385)
Q Consensus       160 ~~~i~~~l~~~~  171 (385)
                      +..|.+.+...+
T Consensus       316 ~~~i~~~l~~~~  327 (416)
T 1udx_A          316 KEALHALVRSTP  327 (416)
T ss_dssp             HHHHHHHHHTSC
T ss_pred             HHHHHHHHHhcc
Confidence            999999987653

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.58  E-value=1.1e-15  Score=137.13  Aligned_cols=118  Identities=16%  Similarity=0.030  Sum_probs=88.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcccc--------Cccccccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF--------GGLRDGYY  294 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~--------~~~~~~~~  294 (385)
                      ...+|+++|.+|||||||+|++++..+.. .++.+++|..............+.+|||||+...        ......++
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~i-vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l   84 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAP-ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEAL   84 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCSC-CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCceee-ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHH
Confidence            45789999999999999999998776532 2333445544333333334677899999998763        34455688


Q ss_pred             ccCcEEEEEEeCCChhhhhh--------------------------------------------hheeccccCCCchHHH
Q psy125          295 IQGQCAIIMFDVTSRITYKN--------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       295 ~~~~~~ilv~d~~~~~s~~~--------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      +++|++|+|||++++.+..+                                            +++|||++|.||+++|
T Consensus        85 ~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~  164 (301)
T 1wf3_A           85 ADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELK  164 (301)
T ss_dssp             SSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHH
T ss_pred             hcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHH
Confidence            99999999999998654333                                            3679999999999999


Q ss_pred             HHHHHHHhcCC
Q psy125          331 LWLARKLIGDP  341 (385)
Q Consensus       331 ~~l~~~i~~~~  341 (385)
                      .+|.+.+...+
T Consensus       165 ~~l~~~l~~~~  175 (301)
T 1wf3_A          165 ADLLALMPEGP  175 (301)
T ss_dssp             HHHHTTCCBCC
T ss_pred             HHHHHhcccCC
Confidence            99998876544

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.58  E-value=5.4e-15  Score=130.39  Aligned_cols=118  Identities=14%  Similarity=0.184  Sum_probs=84.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc------
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI------   80 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~------   80 (385)
                      ++.++|+++|.+|+|||||+|+|++.... ...+..+.|...........+..+.+|||||+..+......++.      
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVV-RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCS-CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            46799999999999999999998876542 23445555665555555556679999999999876554433332      


Q ss_pred             ---cCcEEEEEEeCCChhhhhcH-HHHHHHHHHhcC---CCCEEEEEeCCCCc
Q psy125           81 ---QGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCE---NIPIVLCGNKVDIK  126 (385)
Q Consensus        81 ---~~d~illV~d~~~~~~~~~~-~~~~~~l~~~~~---~~~~ilv~nK~Dl~  126 (385)
                         ++|++++|++++... +... ..|+..+.....   ..|+++|+||+|+.
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS  164 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence               789999999997754 4332 245555554322   24899999999985

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.58  E-value=7.1e-15  Score=134.07  Aligned_cols=114  Identities=17%  Similarity=0.199  Sum_probs=87.4

Q ss_pred             eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCC----------ChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCC
Q psy125           56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT----------SRITYKNVPNWHRDLVRV--CENIPIVLCGNKV  123 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~----------~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~  123 (385)
                      +.+.+.+|||+|++.++.++..++++++++|+|||++          +..++.+...|+..+...  ..+.|+++++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          677787777787777652  3689999999999


Q ss_pred             CCcchhh-----------------------hHHHHHHHHh----------------cCCeEEEEcCCCCCChHHHHHHHH
Q psy125          124 DIKDRKV-----------------------KAKSIVFHRK----------------KNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus       124 Dl~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |+..++.                       ..+...+...                ....++++||+++.|+++.|..++
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9854321                       1223333221                123468999999999999999998


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       341 ~~I~~  345 (354)
T 2xtz_A          341 ETLRR  345 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87643

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=99.58  E-value=1.4e-15  Score=133.41  Aligned_cols=152  Identities=18%  Similarity=0.115  Sum_probs=100.3

Q ss_pred             CCcc-ccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCe
Q psy125           66 AGQE-KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQ  144 (385)
Q Consensus        66 ~g~~-~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~  144 (385)
                      ||+. .........+.++|+++.|+|++++.+..+..  +. +   . ++|.++|+||+|+.+......+..++...+.+
T Consensus         5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~   77 (262)
T 3cnl_A            5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S-RKETIILLNKVDIADEKTTKKWVEFFKKQGKR   77 (262)
T ss_dssp             ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c-CCCcEEEEECccCCCHHHHHHHHHHHHHcCCe
Confidence            5543 33345567789999999999999987765311  11 1   1 78999999999998765555555666666777


Q ss_pred             EEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCe
Q psy125          145 YYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPS  224 (385)
Q Consensus       145 ~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  224 (385)
                      + .+|+.++.|+++++..+...+                                                         
T Consensus        78 v-~iSa~~~~gi~~L~~~l~~~~---------------------------------------------------------   99 (262)
T 3cnl_A           78 V-ITTHKGEPRKVLLKKLSFDRL---------------------------------------------------------   99 (262)
T ss_dssp             E-EECCTTSCHHHHHHHHCCCTT---------------------------------------------------------
T ss_pred             E-EEECCCCcCHHHHHHHHHHhh---------------------------------------------------------
Confidence            8 999999999876654321110                                                         


Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF  286 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  286 (385)
                      ++++++|.+||||||++|++..... ..+.+++|+|.....+.++.   .+.+|||||....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~~  157 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFSLEN---GVKILDTPGILYK  157 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc-cccCCCCCCccceEEEEeCC---CEEEEECCCcccC
Confidence            5899999999999999999775443 45667788887666555543   3689999997643

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.57  E-value=1.2e-14  Score=144.43  Aligned_cols=124  Identities=21%  Similarity=0.243  Sum_probs=86.1

Q ss_pred             CCCCCC---CCceEEEEEcCCCCcHHHHHHHHhcC--CCCC--c------cc------ccceeeeEEEEEEeCCeeEEEE
Q psy125            1 MAAEMD---MPSFKCVLVGDGGTGKTTFVKRHLTG--EFEK--K------YV------ATLGVEVHPLVFHTNRGAIRFN   61 (385)
Q Consensus         1 m~~~~~---~~~~~i~lvG~~g~GKSTLin~ll~~--~~~~--~------~~------~~~g~t~~~~~~~~~~~~~~~~   61 (385)
                      |+..+.   .+..+|+|+|+.|+|||||+++|+..  ....  .      ..      ...+.|.........+..+.++
T Consensus         1 M~~~l~~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~   80 (691)
T 1dar_A            1 MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRIN   80 (691)
T ss_dssp             CCTTCCCCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEE
T ss_pred             CCccccCccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEE
Confidence            555554   34689999999999999999998732  1100  0      00      0234444444444445578899


Q ss_pred             EEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125           62 VWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        62 i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~  127 (385)
                      +|||||+.++......++..+|++|+|+|+++....+....|.. +..  .++|+++++||+|+..
T Consensus        81 liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           81 IIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK--YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             EECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred             EEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence            99999999888888888999999999999998777665544543 222  4889999999999864

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.57  E-value=9.5e-15  Score=131.25  Aligned_cols=117  Identities=14%  Similarity=0.119  Sum_probs=89.1

Q ss_pred             CCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCC----------ChhhhhcHHHHHHHHHH--hcCCCCEEEEEe
Q psy125           54 NRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT----------SRITYKNVPNWHRDLVR--VCENIPIVLCGN  121 (385)
Q Consensus        54 ~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~----------~~~~~~~~~~~~~~l~~--~~~~~~~ilv~n  121 (385)
                      ..+.+.+.+|||+|++.++..+..++++++++|+|+|++          +..++.....|+..+..  ...+.|+++++|
T Consensus       163 ~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~N  242 (327)
T 3ohm_A          163 DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN  242 (327)
T ss_dssp             EETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred             EeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEE
Confidence            335689999999999999999999999999999999776          44555555566666654  236789999999


Q ss_pred             CCCCcchh------------------hhHHHHHHH----------HhcCCeEEEEcCCCCCChHHHHHHHHHHHhcC
Q psy125          122 KVDIKDRK------------------VKAKSIVFH----------RKKNLQYYDISAKSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       122 K~Dl~~~~------------------~~~~~~~~~----------~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~  170 (385)
                      |+|+..++                  ...+...+.          ......++++||+++.|++..|..+.+.+...
T Consensus       243 K~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          243 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             CHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            99986543                  122333332          22345778999999999999999999988654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.57  E-value=2.2e-14  Score=127.19  Aligned_cols=116  Identities=17%  Similarity=0.087  Sum_probs=90.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc------cccccc--c
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------LRDGYY--I  295 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~------~~~~~~--~  295 (385)
                      .++|+++|.+|||||||++++.+..+.....++.+.+.....+...+  ..+.+|||||+..+..      +...|+  .
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~   80 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE--KEFLVVDLPGIYSLTAHSIDELIARNFILDG   80 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT--EEEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC--ceEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence            47999999999999999999987766444444444444444444443  4589999999998877      555566  6


Q ss_pred             cCcEEEEEEeCCChhhhhh------------------------------------------hheeccccCCCchHHHHHH
Q psy125          296 QGQCAIIMFDVTSRITYKN------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       296 ~~~~~ilv~d~~~~~s~~~------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      ++|++|+|+|+++......                                          +++|||++|.||+++|.++
T Consensus        81 ~~d~vi~v~D~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i  160 (271)
T 3k53_A           81 NADVIVDIVDSTCLMRNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMI  160 (271)
T ss_dssp             CCSEEEEEEEGGGHHHHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHH
T ss_pred             CCcEEEEEecCCcchhhHHHHHHHHhcCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHH
Confidence            8999999999998654332                                          7999999999999999999


Q ss_pred             HHHHhcCC
Q psy125          334 ARKLIGDP  341 (385)
Q Consensus       334 ~~~i~~~~  341 (385)
                      ++.+....
T Consensus       161 ~~~~~~~~  168 (271)
T 3k53_A          161 ALMAEGKV  168 (271)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHhccc
Confidence            99876543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.56  E-value=1.2e-14  Score=128.74  Aligned_cols=120  Identities=13%  Similarity=0.170  Sum_probs=84.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhh---------
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG---------   77 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~---------   77 (385)
                      .+.++|+++|.+|+|||||+|+|++..+ ..+.+..+.++.............+.+|||||...+......         
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERV-VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            3579999999999999999999887554 234455666666665555566788999999998765432221         


Q ss_pred             hhccCcEEEEEEeCCChhhhhcH-HHHHHHHHHhcCC---CCEEEEEeCCCCcch
Q psy125           78 YYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCEN---IPIVLCGNKVDIKDR  128 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~~~~~~-~~~~~~l~~~~~~---~~~ilv~nK~Dl~~~  128 (385)
                      ....+|++|+|+|++.. ++... ..|+..+...+..   .|+++|+||+|+...
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~  169 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP  169 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence            12479999999998764 34332 2566655543232   689999999998643

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.55  E-value=3.9e-14  Score=136.29  Aligned_cols=117  Identities=17%  Similarity=0.192  Sum_probs=80.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCC-C-------------Cc------ccccceeeeEEEEEEeCCeeEEEEEEeCCC
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEF-E-------------KK------YVATLGVEVHPLVFHTNRGAIRFNVWDTAG   67 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~-~-------------~~------~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g   67 (385)
                      +..+|+|+|++|+|||||+++|+.... .             ..      .....|+|.........+..+.+++|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            468999999999999999999886311 1             00      112344554444445555678999999999


Q ss_pred             ccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125           68 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        68 ~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~  127 (385)
                      +.++......++..+|++|+|+|+++....+. ..+...+.  ..++|+++++||+|+..
T Consensus        92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~--~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR--LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT--TTTCCEEEEEECTTSCC
T ss_pred             ChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH--HcCCCEEEEEcCcCCcc
Confidence            99888878888999999999999988643221 12222221  24789999999999864

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.55  E-value=2e-14  Score=129.53  Aligned_cols=118  Identities=14%  Similarity=0.217  Sum_probs=88.6

Q ss_pred             EeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCC----------ChhhhhcHHHHHHHHHH--hcCCCCEEEE
Q psy125           52 HTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT----------SRITYKNVPNWHRDLVR--VCENIPIVLC  119 (385)
Q Consensus        52 ~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~----------~~~~~~~~~~~~~~l~~--~~~~~~~ilv  119 (385)
                      ....+.+.+.+|||+|++.++..+..++++++++|+|+|++          +..++.+...|+..+..  ...+.|++++
T Consensus       155 ~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv  234 (340)
T 4fid_A          155 DFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIF  234 (340)
T ss_dssp             EEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEE
T ss_pred             EEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEE
Confidence            34446788999999999999999999999999999999998          56667666667766655  2368899999


Q ss_pred             EeCCCCcchhh-----------------hHHHHHHHHh---------------------------cCCeEEEEcCCCCCC
Q psy125          120 GNKVDIKDRKV-----------------KAKSIVFHRK---------------------------KNLQYYDISAKSNYN  155 (385)
Q Consensus       120 ~nK~Dl~~~~~-----------------~~~~~~~~~~---------------------------~~~~~~~~Sa~~~~g  155 (385)
                      +||+|+..++.                 ..+...+...                           ....++++||++..+
T Consensus       235 ~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~n  314 (340)
T 4fid_A          235 LNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSN  314 (340)
T ss_dssp             EECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHH
T ss_pred             EECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHH
Confidence            99999865322                 1122222111                           124677889999999


Q ss_pred             hHHHHHHHHHHHhc
Q psy125          156 FEKPFLWLARKLIG  169 (385)
Q Consensus       156 i~~l~~~i~~~l~~  169 (385)
                      ++..|..+...++.
T Consensus       315 v~~vF~~v~~~Il~  328 (340)
T 4fid_A          315 IKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99988888887654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.53  E-value=5.4e-14  Score=139.86  Aligned_cols=124  Identities=21%  Similarity=0.253  Sum_probs=86.2

Q ss_pred             CCCCCC-CCceEEEEEcCCCCcHHHHHHHHhc--CCCCC--------cccc------cceeeeEEEEEEeCCeeEEEEEE
Q psy125            1 MAAEMD-MPSFKCVLVGDGGTGKTTFVKRHLT--GEFEK--------KYVA------TLGVEVHPLVFHTNRGAIRFNVW   63 (385)
Q Consensus         1 m~~~~~-~~~~~i~lvG~~g~GKSTLin~ll~--~~~~~--------~~~~------~~g~t~~~~~~~~~~~~~~~~i~   63 (385)
                      |+.... .+..+|+|+|++|+|||||+|+|+.  +....        ....      ..|+|.........+..+.+++|
T Consensus         1 m~~~~~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~li   80 (693)
T 2xex_A            1 MAREFSLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNII   80 (693)
T ss_dssp             -CCSSCSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEE
T ss_pred             CCCcCCcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEE
Confidence            445543 4568999999999999999999884  22110        0011      23444444444445557889999


Q ss_pred             eCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125           64 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        64 Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~  127 (385)
                      ||||+.++......+++.+|++|+|+|+.+....+....|.. +..  .+.|+++++||+|+..
T Consensus        81 DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~--~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           81 DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT--YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred             ECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence            999999888888888999999999999998766655444433 332  4889999999999864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.53  E-value=1.9e-14  Score=129.11  Aligned_cols=161  Identities=17%  Similarity=0.247  Sum_probs=83.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcC-CCCCcccc------cceeeeEEEEEEe--CCeeEEEEEEeCCCc-------ccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTG-EFEKKYVA------TLGVEVHPLVFHT--NRGAIRFNVWDTAGQ-------EKF   71 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~-~~~~~~~~------~~g~t~~~~~~~~--~~~~~~~~i~Dt~g~-------~~~   71 (385)
                      -.++|+|+|++|||||||+|+|++. .+.....+      ..+.......+..  ......+++|||+|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            3589999999999999999997764 33222210      0111111112222  233578999999998       444


Q ss_pred             ccchh-------hhhcc-------------CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-
Q psy125           72 GGLRD-------GYYIQ-------------GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-  130 (385)
Q Consensus        72 ~~~~~-------~~~~~-------------~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-  130 (385)
                      ..+..       .++.+             +++++++.+.+. .++.....  ..+.......++++|+||.|+..... 
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e~  173 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKER  173 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHHH
Confidence            44333       33322             233343333222 13433321  22222335678999999999875432 


Q ss_pred             ---hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHhcCCC
Q psy125          131 ---KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPN  172 (385)
Q Consensus       131 ---~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~  172 (385)
                         ..+..+++...+..++++||+++ ++++.+..+++.+.....
T Consensus       174 ~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p  217 (301)
T 2qnr_A          174 ERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIP  217 (301)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCC
Confidence               23455667777889999999999 999999999998866433

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.52  E-value=1.1e-13  Score=137.59  Aligned_cols=109  Identities=12%  Similarity=0.101  Sum_probs=74.6

Q ss_pred             EEEEEeCCCccc---cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh------
Q psy125           59 RFNVWDTAGQEK---FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK------  129 (385)
Q Consensus        59 ~~~i~Dt~g~~~---~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~------  129 (385)
                      .+.+|||||...   .......++.++|++|+|+|++++.+......|...+..  .+.|+++|+||+|+....      
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee  252 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDD  252 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTC
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhh
Confidence            588999999754   233456788999999999999887666554444333321  367899999999986442      


Q ss_pred             --hhH----HHHH-----HHHh--------cCCeEEEEcCC--------------CCCChHHHHHHHHHHHhc
Q psy125          130 --VKA----KSIV-----FHRK--------KNLQYYDISAK--------------SNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       130 --~~~----~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~gi~~l~~~i~~~l~~  169 (385)
                        ...    ....     +...        ...+++++||+              ++.|+++++..|.+.+..
T Consensus       253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence              000    1111     1111        12368999999              999999999999887644

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.51  E-value=3.2e-13  Score=134.43  Aligned_cols=118  Identities=17%  Similarity=0.134  Sum_probs=83.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC--CCCC--------ccc------ccceeeeEEEEEEeCCee-------EEEEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTG--EFEK--------KYV------ATLGVEVHPLVFHTNRGA-------IRFNVW   63 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~--~~~~--------~~~------~~~g~t~~~~~~~~~~~~-------~~~~i~   63 (385)
                      .+..+|+|+|+.|+|||||+++|+..  ....        ...      ...|.|.........+..       +.+++|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            45679999999999999999998742  1111        000      023445444333333333       899999


Q ss_pred             eCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125           64 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        64 Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~  127 (385)
                      ||||+.++......+++.+|++|+|+|+++....+....|.. +.  ..++|+++++||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~--~~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-AN--KYKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HH--HcCCCEEEEEeCCCccc
Confidence            999999888888888999999999999998765544333432 22  25789999999999854

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.50  E-value=1.2e-13  Score=125.20  Aligned_cols=162  Identities=10%  Similarity=0.130  Sum_probs=96.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccceeeeEEEE--------------------------------
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLV--------------------------------   50 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g~t~~~~~--------------------------------   50 (385)
                      ...++|+|+|++|||||||+|+|++..+.+.    .+..++.......                                
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            4567999999999999999999888665322    1122211111000                                


Q ss_pred             ---------------------EE-eCCeeEEEEEEeCCCccc-------------cccchhhhhccCcEEEEEEeCCChh
Q psy125           51 ---------------------FH-TNRGAIRFNVWDTAGQEK-------------FGGLRDGYYIQGQCAIIMFDVTSRI   95 (385)
Q Consensus        51 ---------------------~~-~~~~~~~~~i~Dt~g~~~-------------~~~~~~~~~~~~d~illV~d~~~~~   95 (385)
                                           .. .......+.+|||||...             +......++..+|++++|+|..+..
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~  181 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTD  181 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSC
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcc
Confidence                                 00 011234689999999753             2234456778999999999974332


Q ss_pred             -hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHh--cC--CeEEEEcCC---C---CCChHHHHHHHH
Q psy125           96 -TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK--KN--LQYYDISAK---S---NYNFEKPFLWLA  164 (385)
Q Consensus        96 -~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~--~~--~~~~~~Sa~---~---~~gi~~l~~~i~  164 (385)
                       .......+...+.  ..+.|+++|+||+|+......  .......  ..  ..++++++.   +   +.|+.+++..+.
T Consensus       182 ~~~~~~~~i~~~~~--~~~~~~i~v~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~  257 (315)
T 1jwy_B          182 LANSDALQLAKEVD--PEGKRTIGVITKLDLMDKGTD--AMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEI  257 (315)
T ss_dssp             STTCSHHHHHHHHC--SSCSSEEEEEECTTSSCSSCC--CHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHhC--CCCCcEEEEEcCcccCCcchH--HHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHH
Confidence             2122112333332  247899999999998654331  1112221  11  456666554   4   788999999998


Q ss_pred             HHHhcCCC
Q psy125          165 RKLIGDPN  172 (385)
Q Consensus       165 ~~l~~~~~  172 (385)
                      ..+...+.
T Consensus       258 ~~~~~~~~  265 (315)
T 1jwy_B          258 LYFKNHPI  265 (315)
T ss_dssp             HHHHTCTT
T ss_pred             HHHhCCCc
Confidence            88866543

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.50  E-value=4.1e-14  Score=132.05  Aligned_cols=116  Identities=17%  Similarity=0.170  Sum_probs=83.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEE--EEEEEEeCCeeEEEEEeeCCCccccCccccc-------c
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV--HPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG-------Y  293 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-------~  293 (385)
                      ..++|+++|..|+|||||+++++...+. ......|++.  ....+...+. ..+.+|||||+..+..+...       +
T Consensus        33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~-~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~  110 (423)
T 3qq5_A           33 FRRYIVVAGRRNVGKSSFMNALVGQNVS-IVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV  110 (423)
T ss_dssp             CCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence            4689999999999999999998876652 1223334433  3344444443 26899999999988776443       7


Q ss_pred             cccCcEEEEEEeCCChhhhhh----------------------------------------hheeccccCCCchHHHHHH
Q psy125          294 YIQGQCAIIMFDVTSRITYKN----------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       294 ~~~~~~~ilv~d~~~~~s~~~----------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      ++++|++|+|||++.......                                        |+++||++|.||+++|.+|
T Consensus       111 l~~aD~vllVvD~~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L  190 (423)
T 3qq5_A          111 FYRADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTI  190 (423)
T ss_dssp             HTSCSEEEEECSSSCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHH
T ss_pred             HhcCCEEEEEEeCCChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence            889999999999954443333                                        7999999999999999999


Q ss_pred             HHHHhcC
Q psy125          334 ARKLIGD  340 (385)
Q Consensus       334 ~~~i~~~  340 (385)
                      ++.+...
T Consensus       191 ~~~l~~~  197 (423)
T 3qq5_A          191 SEILPGD  197 (423)
T ss_dssp             HHHSCCC
T ss_pred             HHhhhhh
Confidence            9998655

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.49  E-value=1.8e-14  Score=136.20  Aligned_cols=115  Identities=13%  Similarity=0.118  Sum_probs=78.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEE--EEEEEeCCeeEEEEEeeCCCccccCcccc--------c
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH--PLVFHTNRGAIRFNVWDTAGQEKFGGLRD--------G  292 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~--------~  292 (385)
                      ..++|+++|.+||||||++|+++...+.. .....|++..  ...+.+++  ..+.||||||+..+.....        .
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~-v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAI-VTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBSC-CSCCTTCCHHHHHHEEEETT--EEEEECC--------------------C
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCccc-ccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhh
Confidence            35899999999999999999988654321 1222333332  22334444  5679999999876543322        3


Q ss_pred             ccccCcEEEEEEeCCChhhhhh--------------------------------------hheeccccCCCchHHHHHHH
Q psy125          293 YYIQGQCAIIMFDVTSRITYKN--------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       293 ~~~~~~~~ilv~d~~~~~s~~~--------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      +++.+|++|+|||++++.++++                                      +++|||++|.||+++|.+|.
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~  379 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGDQEIYEQVKHRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAIL  379 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHHHHHHHHHTTSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHH
T ss_pred             hhhcCCEEEEEeccCCCCCHHHHHHHHhccCCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHH
Confidence            6889999999999998776654                                      58999999999999999999


Q ss_pred             HHHhcC
Q psy125          335 RKLIGD  340 (385)
Q Consensus       335 ~~i~~~  340 (385)
                      +.+...
T Consensus       380 ~~~~~~  385 (462)
T 3geh_A          380 EIVQTG  385 (462)
T ss_dssp             HHHTTS
T ss_pred             HHHhcc
Confidence            988654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.47  E-value=1.4e-13  Score=128.05  Aligned_cols=154  Identities=14%  Similarity=0.177  Sum_probs=77.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcc--------cccceeeeEEEEEEe--CCeeEEEEEEeCCCcccccc-----
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKY--------VATLGVEVHPLVFHT--NRGAIRFNVWDTAGQEKFGG-----   73 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~--------~~~~g~t~~~~~~~~--~~~~~~~~i~Dt~g~~~~~~-----   73 (385)
                      .++|+|+|++|||||||+|+|++..+....        .++.+  .....+.+  ......+++||++|......     
T Consensus        31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~--~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~  108 (418)
T 2qag_C           31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQ--VEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW  108 (418)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCE--EEEEECC------CEEEEEEECC-----------C
T ss_pred             CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcccee--eeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence            579999999999999999998776542111        11111  11111111  22335789999999754311     


Q ss_pred             --------------------chhhhhccCcEEEEEEeCCCh-hhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcchhhh
Q psy125           74 --------------------LRDGYYIQGQCAIIMFDVTSR-ITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKDRKVK  131 (385)
Q Consensus        74 --------------------~~~~~~~~~d~illV~d~~~~-~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~  131 (385)
                                          +...++.++++.+++|..... .++.... .|+..+.   .+.++++|+||+|+......
T Consensus       109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev  185 (418)
T 2qag_C          109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEEC  185 (418)
T ss_dssp             HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHH
Confidence                                112234455555555555543 3454443 4555543   47899999999998654332


Q ss_pred             ----HHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125          132 ----AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       132 ----~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                          ..+...+...+.+++.+|++++.++++++..+...+
T Consensus       186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence                344556666788999999999999988777666543

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.47  E-value=7.4e-15  Score=139.47  Aligned_cols=112  Identities=21%  Similarity=0.235  Sum_probs=86.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEE--EEEEEeCCeeEEEEEeeCCCcc-ccCcc--------ccc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH--PLVFHTNRGAIRFNVWDTAGQE-KFGGL--------RDG  292 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~Dt~G~~-~~~~~--------~~~  292 (385)
                      .++|+++|.+|||||||+|+++...+. .....+++|..  ...+.++  +..+.||||||+. ++...        ...
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~a-~vs~~~gTT~d~~~~~i~~~--g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~  319 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDRA-IVTDIPGTTRDVISEEIVIR--GILFRIVDTAGVRSETNDLVERLGIERTLQ  319 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTBC-CCCCSSCCSSCSCCEEEEET--TEEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCCC-ccCCCCCeeeeeEEEEEecC--CeEEEEEECCCccccchhhHHHHHHHHHHH
Confidence            489999999999999999998865432 22233344433  3344444  4568999999998 66432        235


Q ss_pred             ccccCcEEEEEEeCCChhhhhh---------------------------------------hheeccccCCCchHHHHHH
Q psy125          293 YYIQGQCAIIMFDVTSRITYKN---------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       293 ~~~~~~~~ilv~d~~~~~s~~~---------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      +++.+|++|+|||++++.++++                                       +++|||++|.||+++|.+|
T Consensus       320 ~~~~aD~vl~VvD~s~~~s~~~~~il~~l~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l  399 (482)
T 1xzp_A          320 EIEKADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESI  399 (482)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHH
T ss_pred             HhhcccEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHH
Confidence            7899999999999999877655                                       5789999999999999999


Q ss_pred             HHHHh
Q psy125          334 ARKLI  338 (385)
Q Consensus       334 ~~~i~  338 (385)
                      .+.+.
T Consensus       400 ~~~~~  404 (482)
T 1xzp_A          400 YRETQ  404 (482)
T ss_dssp             HHHTH
T ss_pred             HHHHh
Confidence            99876

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.46  E-value=9.8e-15  Score=139.74  Aligned_cols=114  Identities=13%  Similarity=0.113  Sum_probs=90.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      ..+|+++|.+++|||||++++....+.....+++..+.....+... .+..+.||||||++.|..++..+++.+|++|||
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILV   82 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVILV   82 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEEE
Confidence            4689999999999999999998776655554444333333333332 233588999999999999999999999999999


Q ss_pred             EeCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          304 FDVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       304 ~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      ||+++....+.                                                  |+++||++|.||+++|.+|
T Consensus        83 VDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I  162 (537)
T 3izy_P           83 VAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEAT  162 (537)
T ss_dssp             CBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHH
T ss_pred             EECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHH
Confidence            99999655544                                                  6889999999999999999


Q ss_pred             HHHHh
Q psy125          334 ARKLI  338 (385)
Q Consensus       334 ~~~i~  338 (385)
                      ...+.
T Consensus       163 ~~l~~  167 (537)
T 3izy_P          163 IALAE  167 (537)
T ss_dssp             HHHHT
T ss_pred             HHhhh
Confidence            98764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.45  E-value=8.8e-14  Score=122.55  Aligned_cols=117  Identities=13%  Similarity=0.108  Sum_probs=84.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCc-cccccccc-eeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc---------
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGE-FEKKYVAT-LGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD---------  291 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------  291 (385)
                      ..++|+++|.+||||||++++++... +...+.++ ...+.....+..+  +..+.||||||+..+.....         
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~~~~i~~~   98 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG--NREIVIIDTPDMFSWKDHCEALYKEVQRC   98 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET--TEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC--CCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence            56899999999999999999998766 44444443 1112222233333  45689999999876643322         


Q ss_pred             --cccccCcEEEEEEeCCChhhhhh-------------------------------------------------------
Q psy125          292 --GYYIQGQCAIIMFDVTSRITYKN-------------------------------------------------------  314 (385)
Q Consensus       292 --~~~~~~~~~ilv~d~~~~~s~~~-------------------------------------------------------  314 (385)
                        .+++++|++|+|||+++......                                                       
T Consensus        99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~  178 (260)
T 2xtp_A           99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACGGR  178 (260)
T ss_dssp             HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred             HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhCCe
Confidence              26789999999999986221111                                                       


Q ss_pred             ---h--heeccccCCCchHHHHHHHHHHhcCC
Q psy125          315 ---Y--YDISAKSNYNFEKPFLWLARKLIGDP  341 (385)
Q Consensus       315 ---~--~e~Sak~~~~v~~~f~~l~~~i~~~~  341 (385)
                         |  ++|||++|.||+++|.+|++.+..+.
T Consensus       179 ~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          179 ICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence               1  67899999999999999999998765

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.45  E-value=1.3e-12  Score=126.47  Aligned_cols=122  Identities=18%  Similarity=0.163  Sum_probs=78.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccccceeeeEEEEEEeCC-----------------------------e
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNR-----------------------------G   56 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~-~~~~~~g~t~~~~~~~~~~-----------------------------~   56 (385)
                      ...++|+|+|.+|+|||||+|+|++..... .+.+.+++++.........                             +
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            356899999999999999999988876531 1222222222211111000                             0


Q ss_pred             e----------EEEEEEeCCCccc-----------cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC
Q psy125           57 A----------IRFNVWDTAGQEK-----------FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP  115 (385)
Q Consensus        57 ~----------~~~~i~Dt~g~~~-----------~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~  115 (385)
                      .          ..+.+|||||...           +......++..+|++|+|+|+++.........++..+..  .+.|
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~--~~~p  220 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG--HEDK  220 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--CGGG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--cCCC
Confidence            0          2588999999864           223445677899999999999875433333445544432  3578


Q ss_pred             EEEEEeCCCCcchhh
Q psy125          116 IVLCGNKVDIKDRKV  130 (385)
Q Consensus       116 ~ilv~nK~Dl~~~~~  130 (385)
                      +++|+||+|+.....
T Consensus       221 vilVlNK~Dl~~~~e  235 (550)
T 2qpt_A          221 IRVVLNKADMVETQQ  235 (550)
T ss_dssp             EEEEEECGGGSCHHH
T ss_pred             EEEEEECCCccCHHH
Confidence            999999999876543

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.44  E-value=3e-14  Score=122.04  Aligned_cols=84  Identities=15%  Similarity=0.128  Sum_probs=68.0

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccc---cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccccccc--
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ--  296 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~--  296 (385)
                      ...++|+++|.+|||||++++++..+.+...   +.++.+.++         ....+.+|||||+++++..+..|++.  
T Consensus        10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   80 (218)
T 1nrj_B           10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTRA   80 (218)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhcc
Confidence            3568999999999999999999998776542   444433222         44568999999999999998999887  


Q ss_pred             --CcEEEEEEeCC-Chhhhhh
Q psy125          297 --GQCAIIMFDVT-SRITYKN  314 (385)
Q Consensus       297 --~~~~ilv~d~~-~~~s~~~  314 (385)
                        +|++|+|||++ ++.+|.+
T Consensus        81 ~~~~~~i~v~D~~~~~~~~~~  101 (218)
T 1nrj_B           81 KFVKGLIFMVDSTVDPKKLTT  101 (218)
T ss_dssp             GGEEEEEEEEETTSCTTCCHH
T ss_pred             ccCCEEEEEEECCCChHHHHH
Confidence              99999999999 8877764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.43  E-value=2.1e-14  Score=132.16  Aligned_cols=157  Identities=12%  Similarity=0.151  Sum_probs=91.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccceee----------------------eE-------------
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVE----------------------VH-------------   47 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g~t----------------------~~-------------   47 (385)
                      ...++|+|+|.+|||||||+|+|++..+.+.    ....++.+                      +.             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            3457999999999999999999887665322    22223211                      11             


Q ss_pred             ----------EEEEEeC-CeeEEEEEEeCCCccc-------------cccchhhhhccCcEE-EEEEeCCChhhhhcHHH
Q psy125           48 ----------PLVFHTN-RGAIRFNVWDTAGQEK-------------FGGLRDGYYIQGQCA-IIMFDVTSRITYKNVPN  102 (385)
Q Consensus        48 ----------~~~~~~~-~~~~~~~i~Dt~g~~~-------------~~~~~~~~~~~~d~i-llV~d~~~~~~~~~~~~  102 (385)
                                ....... .....+.+|||||...             +..+...++.+++.+ ++|.+++..........
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                      0001111 1135689999999743             222444566666555 45666655332222222


Q ss_pred             HHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHH--H-hcC-CeEEEEcCCCCCChHHHHHHHHH
Q psy125          103 WHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFH--R-KKN-LQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus       103 ~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~--~-~~~-~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      +...+.  ..+.|+++|+||+|+..... ......-.  . ..+ ..++.+||+++.|+++++..+..
T Consensus       189 i~~~~~--~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVD--PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHC--TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhC--cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            333332  24789999999999865432 11111100  0 011 25677999999999999888876

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.40  E-value=1.7e-12  Score=125.51  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=85.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCC--------------------CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEF--------------------EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ   68 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~--------------------~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~   68 (385)
                      .-+|+|+|+.++|||||..+|+...-                    ........|+|.........+++..++++||||+
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH  110 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence            45799999999999999999863110                    0011223455555556667778899999999999


Q ss_pred             cccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125           69 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        69 ~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~  127 (385)
                      .+|.......++-+|++|+|+|+......+....|.....   .++|.++++||+|...
T Consensus       111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~---~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRM---RATPVMTFVNKMDREA  166 (548)
T ss_dssp             GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCCEEEEEECTTSCC
T ss_pred             HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHH---hCCceEEEEecccchh
Confidence            9999888899999999999999998766655445543332   5899999999999754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.40  E-value=4.2e-13  Score=120.43  Aligned_cols=117  Identities=18%  Similarity=0.120  Sum_probs=86.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc---------ccCcccccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE---------KFGGLRDGY  293 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~---------~~~~~~~~~  293 (385)
                      ...+++++|.+|||||||++++++..+. ..++.+++++......+......+.+|||||+.         .+......+
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~~~-i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~   85 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS-ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSS   85 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCSEE-ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSC
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHHH
Confidence            4568999999999999999998876543 223344455433322233345678999999997         345556678


Q ss_pred             cccCcEEEEEEeCCChhhhhh---------------------------------------------hheeccccCCCchH
Q psy125          294 YIQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISAKSNYNFEK  328 (385)
Q Consensus       294 ~~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~  328 (385)
                      ++.+|++++|+|+++ -+-.+                                             ++++||++|.|+++
T Consensus        86 l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~  164 (301)
T 1ega_A           86 IGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDT  164 (301)
T ss_dssp             CCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHH
T ss_pred             HhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHH
Confidence            999999999999976 22111                                             67899999999999


Q ss_pred             HHHHHHHHHhcCC
Q psy125          329 PFLWLARKLIGDP  341 (385)
Q Consensus       329 ~f~~l~~~i~~~~  341 (385)
                      +|+++.+.+...+
T Consensus       165 l~~~i~~~l~~~~  177 (301)
T 1ega_A          165 IAAIVRKHLPEAT  177 (301)
T ss_dssp             HHHHHHTTCCBCC
T ss_pred             HHHHHHHhCCcCC
Confidence            9999998876544

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.40  E-value=4.6e-12  Score=115.24  Aligned_cols=83  Identities=17%  Similarity=0.124  Sum_probs=54.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEE--EEeCCe---------------eEEEEEEeCCCcccc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--FHTNRG---------------AIRFNVWDTAGQEKF   71 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~--~~~~~~---------------~~~~~i~Dt~g~~~~   71 (385)
                      .++|+|+|.+|||||||+|+|.+...  ...+.++.|.....  ......               ...+.+|||||+..+
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~--~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~   79 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence            37999999999999999999887652  22222333332221  222211               257999999998754


Q ss_pred             c----cc---hhhhhccCcEEEEEEeCCC
Q psy125           72 G----GL---RDGYYIQGQCAIIMFDVTS   93 (385)
Q Consensus        72 ~----~~---~~~~~~~~d~illV~d~~~   93 (385)
                      .    .+   ...+++++|++++|+|+++
T Consensus        80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           80 ASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             ccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence            2    12   2335789999999999986

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.40  E-value=5.4e-13  Score=122.86  Aligned_cols=115  Identities=19%  Similarity=0.096  Sum_probs=81.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc---------ccccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---------LRDGY  293 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~---------~~~~~  293 (385)
                      ..++++++|.+||||||+++++....+...  ...+++.......+......+.+|||||+..+..         ....+
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  243 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIA--SYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILAL  243 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCCEEE--CCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence            457999999999999999999886653221  1112222222222222356789999999865421         11134


Q ss_pred             cccCcEEEEEEeCCChh--hhhh---------------------------------------------hheeccccCCCc
Q psy125          294 YIQGQCAIIMFDVTSRI--TYKN---------------------------------------------YYDISAKSNYNF  326 (385)
Q Consensus       294 ~~~~~~~ilv~d~~~~~--s~~~---------------------------------------------~~e~Sak~~~~v  326 (385)
                      ...+|++|+|+|++++.  ++++                                             +++|||++|.||
T Consensus       244 ~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi  323 (357)
T 2e87_A          244 RYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGI  323 (357)
T ss_dssp             GGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTH
T ss_pred             HhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCH
Confidence            55799999999999876  4443                                             679999999999


Q ss_pred             hHHHHHHHHHHhc
Q psy125          327 EKPFLWLARKLIG  339 (385)
Q Consensus       327 ~~~f~~l~~~i~~  339 (385)
                      +++|.+|.+.+..
T Consensus       324 ~~l~~~i~~~l~~  336 (357)
T 2e87_A          324 DLVKEEIIKTLRP  336 (357)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998744

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.40  E-value=2.6e-13  Score=131.83  Aligned_cols=117  Identities=15%  Similarity=0.162  Sum_probs=83.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC--ccc-----ccc------ccceeeEEEEEEEEe-----CCeeEEEEEeeCCCccc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTG--EFE-----KKY------VATLGVEVHPLVFHT-----NRGAIRFNVWDTAGQEK  285 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~--~~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~l~i~Dt~G~~~  285 (385)
                      ..+++++|..++|||||+++++..  .+.     ..+      ..+.|.|.....+.+     ++..+.++||||||+..
T Consensus         4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d   83 (599)
T 3cb4_D            4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD   83 (599)
T ss_dssp             EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence            468999999999999999998742  111     111      112344544333333     45568899999999999


Q ss_pred             cCcccccccccCcEEEEEEeCCChhhhhh---------------------------------------------hheecc
Q psy125          286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISA  320 (385)
Q Consensus       286 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sa  320 (385)
                      |......+++.+|++|+|+|++++.+++.                                             ++++||
T Consensus        84 F~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSA  163 (599)
T 3cb4_D           84 FSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSA  163 (599)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECT
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeec
Confidence            99988999999999999999999776665                                             688999


Q ss_pred             ccCCCchHHHHHHHHHHhcC
Q psy125          321 KSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       321 k~~~~v~~~f~~l~~~i~~~  340 (385)
                      ++|.||+++|++|++.+...
T Consensus       164 ktg~GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          164 KTGVGVQDVLERLVRDIPPP  183 (599)
T ss_dssp             TTCTTHHHHHHHHHHHSCCC
T ss_pred             ccCCCchhHHHHHhhcCCCc
Confidence            99999999999999988653

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.40  E-value=3.5e-13  Score=124.36  Aligned_cols=153  Identities=12%  Similarity=0.145  Sum_probs=92.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccce---e----------------------------------------
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG---V----------------------------------------   44 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g---~----------------------------------------   44 (385)
                      .-++|+|+|++|||||||+|+|++..+.+.......   +                                        
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            345999999999999999999888665332211110   0                                        


Q ss_pred             ---------eeEEEEEEe-CCeeEEEEEEeCCCcccc-------------ccchhhhhccCcEEEEEEeCCChhhhhcHH
Q psy125           45 ---------EVHPLVFHT-NRGAIRFNVWDTAGQEKF-------------GGLRDGYYIQGQCAIIMFDVTSRITYKNVP  101 (385)
Q Consensus        45 ---------t~~~~~~~~-~~~~~~~~i~Dt~g~~~~-------------~~~~~~~~~~~d~illV~d~~~~~~~~~~~  101 (385)
                               ........+ ......+.+|||||...+             ..+...++.++|++|+|++..+......  
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~--  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS--  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence                     000000000 111335889999998765             3455678899999999998755433221  


Q ss_pred             HHHHHHHHh-cCCCCEEEEEeCCCCcchhhh-HH-HHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125          102 NWHRDLVRV-CENIPIVLCGNKVDIKDRKVK-AK-SIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus       102 ~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~~-~~-~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      .|+..+... ..+.|+++|+||+|+...... .. ...+....+..++.+++.++.++++.+..
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            233322222 246799999999998754322 11 11122234568899999988877664433

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.39  E-value=9.1e-13  Score=121.17  Aligned_cols=103  Identities=9%  Similarity=-0.019  Sum_probs=69.9

Q ss_pred             eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHH-H
Q psy125           57 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS-I  135 (385)
Q Consensus        57 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~-~  135 (385)
                      ++.+.++||||...   .....+..+|++++|+|.......+.+.       ......|.++|+||+|+......... .
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~-------~~~~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK-------KGVLELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC-------TTSGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH-------HhHhhcCCEEEEECCCCcChhHHHHHHH
Confidence            46789999999542   2334558899999999987654433221       11124588999999998654322111 1


Q ss_pred             HHHH----h------cCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          136 VFHR----K------KNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       136 ~~~~----~------~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      .+..    .      ...+++.+||+++.|+++++..|.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1111    1      14689999999999999999999888754

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.37  E-value=2.4e-12  Score=120.49  Aligned_cols=117  Identities=16%  Similarity=0.095  Sum_probs=85.8

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEE-------EEE---------e---CCeeEEEEEeeCCC
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL-------VFH---------T---NRGAIRFNVWDTAG  282 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------~---~~~~~~l~i~Dt~G  282 (385)
                      ...++|+++|.+++|||||+++++....... ......+....       .+.         .   ......+.||||||
T Consensus         6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG   84 (403)
T 3sjy_A            6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG   84 (403)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence            3568999999999999999999875322211 11111111000       000         0   11236789999999


Q ss_pred             ccccCcccccccccCcEEEEEEeCCChhhhhh------------------------------------------------
Q psy125          283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------------------------  314 (385)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~------------------------------------------------  314 (385)
                      ++.|......++..+|++|+|+|+++..++..                                                
T Consensus        85 h~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~  164 (403)
T 3sjy_A           85 HEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAE  164 (403)
T ss_dssp             CGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTT
T ss_pred             cHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCC
Confidence            99999988889999999999999998764433                                                


Q ss_pred             ---hheeccccCCCchHHHHHHHHHHhc
Q psy125          315 ---YYDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       315 ---~~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                         ++++||++|.||+++|.+|.+.+..
T Consensus       165 ~~~ii~vSA~~g~gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          165 NVPIIPVSALHKINIDSLIEGIEEYIKT  192 (403)
T ss_dssp             TCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             CCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence               6899999999999999999987754

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.37  E-value=4.4e-13  Score=130.02  Aligned_cols=117  Identities=15%  Similarity=0.229  Sum_probs=84.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC--ccc-----ccccc------ceeeEEEE----EEEEe-CCeeEEEEEeeCCCccc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTG--EFE-----KKYVA------TLGVEVHP----LVFHT-NRGAIRFNVWDTAGQEK  285 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~--~~~-----~~~~~------~~~~~~~~----~~~~~-~~~~~~l~i~Dt~G~~~  285 (385)
                      ..+++++|..++|||||+++++..  .+.     ..+..      ..|.|...    ..+.. ++..+.++||||||+..
T Consensus         6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d   85 (600)
T 2ywe_A            6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD   85 (600)
T ss_dssp             EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence            468999999999999999998742  111     11111      12223221    11111 45568899999999999


Q ss_pred             cCcccccccccCcEEEEEEeCCChhhhhh---------------------------------------------hheecc
Q psy125          286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------YYDISA  320 (385)
Q Consensus       286 ~~~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------~~e~Sa  320 (385)
                      |......+++.+|++|+|+|++++.+++.                                             ++++||
T Consensus        86 F~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSA  165 (600)
T 2ywe_A           86 FSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASA  165 (600)
T ss_dssp             GHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBT
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEe
Confidence            98888889999999999999999876665                                             588999


Q ss_pred             ccCCCchHHHHHHHHHHhcC
Q psy125          321 KSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       321 k~~~~v~~~f~~l~~~i~~~  340 (385)
                      ++|.||+++|++|++.+...
T Consensus       166 ktg~GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          166 KEGIGIEEILEAIVNRIPPP  185 (600)
T ss_dssp             TTTBSHHHHHHHHHHHSCCC
T ss_pred             ecCCCchHHHHHHHHhcccc
Confidence            99999999999999988653

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.37  E-value=3.2e-13  Score=129.35  Aligned_cols=89  Identities=22%  Similarity=0.247  Sum_probs=65.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC--ccccc---------------------------cccceeeEEEEEEEEeCCeeE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YVATLGVEVHPLVFHTNRGAI  273 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~  273 (385)
                      ..+|++++|.+++|||||+++++..  .+...                           .....|.+.......++...+
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            5699999999999999999998743  11111                           111124444444444555667


Q ss_pred             EEEEeeCCCccccCcccccccccCcEEEEEEeCCChhh
Q psy125          274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRIT  311 (385)
Q Consensus       274 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s  311 (385)
                      .+.||||||+++|......+++.+|++|+|||++++.+
T Consensus       112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~  149 (483)
T 3p26_A          112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAF  149 (483)
T ss_dssp             EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC---
T ss_pred             eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCcc
Confidence            89999999999999988999999999999999999744

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.37  E-value=2.8e-13  Score=124.63  Aligned_cols=121  Identities=17%  Similarity=0.293  Sum_probs=70.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhc-Cccccccc--------cceeeEEEEEEEEeCCeeEEEEEeeCCCc-------ccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLT-GEFEKKYV--------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQ-------EKF  286 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------~~~  286 (385)
                      ..++|+++|.+|+|||||+++++. +.+...+.        +|++.+.....+..++....+.+|||||+       +++
T Consensus        36 ~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~  115 (361)
T 2qag_A           36 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF  115 (361)
T ss_dssp             CEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHH
Confidence            358999999999999999999653 33433332        45554444444444556678999999999       788


Q ss_pred             Ccccc-------cccccCcEE-----------EEEEeCCC-hhhhhh---------------------------------
Q psy125          287 GGLRD-------GYYIQGQCA-----------IIMFDVTS-RITYKN---------------------------------  314 (385)
Q Consensus       287 ~~~~~-------~~~~~~~~~-----------ilv~d~~~-~~s~~~---------------------------------  314 (385)
                      ..+..       .|+++++++           ++||++++ +.+|..                                 
T Consensus       116 ~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~~~~piIlV~NK~Dl~~~~ev~~~  195 (361)
T 2qag_A          116 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERERL  195 (361)
T ss_dssp             CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTCS-SCEEEEEECCSSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhccCCCEEEEEECCCCCCHHHHHHH
Confidence            88887       677666554           48888876 445443                                 


Q ss_pred             --------------hheeccccCCCchHHHHHHHHHHhcCCCcc
Q psy125          315 --------------YYDISAKSNYNFEKPFLWLARKLIGDPNLE  344 (385)
Q Consensus       315 --------------~~e~Sak~~~~v~~~f~~l~~~i~~~~~~~  344 (385)
                                    |+++||++|.| ++.|.++++.|...-++.
T Consensus       196 k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~  238 (361)
T 2qag_A          196 KKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFS  238 (361)
T ss_dssp             HHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCE
T ss_pred             HHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCC
Confidence                          89999999999 999999999998765543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.36  E-value=7.6e-13  Score=121.16  Aligned_cols=103  Identities=9%  Similarity=-0.036  Sum_probs=63.1

Q ss_pred             eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH-HH
Q psy125           56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA-KS  134 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~-~~  134 (385)
                      .+..+.++||+|....   .......+|++++|+|+......+.+.   ..+    -..|.++++||+|+....... ..
T Consensus       165 ~~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~---~~i----l~~~~ivVlNK~Dl~~~~~~~~~~  234 (349)
T 2www_A          165 AGYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIK---RGI----IEMADLVAVTKSDGDLIVPARRIQ  234 (349)
T ss_dssp             TTCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHH
T ss_pred             CCCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhH---HHH----HhcCCEEEEeeecCCCchhHHHHH
Confidence            3457889999996421   234567899999999987653222111   111    245788999999986432111 11


Q ss_pred             HHHHH----------hcCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          135 IVFHR----------KKNLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       135 ~~~~~----------~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      ..+..          ....+++.+|++++.|+++++..|.+.+.
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            11111          11357889999999999999999988763

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.36  E-value=7.4e-13  Score=115.07  Aligned_cols=88  Identities=15%  Similarity=0.041  Sum_probs=60.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc-----------ccCcccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE-----------KFGGLRD  291 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~-----------~~~~~~~  291 (385)
                      ..++|+++|.+||||||+++++++..+.....++.+++.......+...+..+.||||||..           .+.....
T Consensus        28 ~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~  107 (239)
T 3lxx_A           28 SQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCIL  107 (239)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHH
Confidence            56899999999999999999999877765554433444433333332234568999999953           3444455


Q ss_pred             cccccCcEEEEEEeCCChh
Q psy125          292 GYYIQGQCAIIMFDVTSRI  310 (385)
Q Consensus       292 ~~~~~~~~~ilv~d~~~~~  310 (385)
                      .+++++|++|+|+|+++..
T Consensus       108 ~~~~~~~~~l~v~d~~~~~  126 (239)
T 3lxx_A          108 LTSPGPHALLLVVPLGRYT  126 (239)
T ss_dssp             HTTTCCSEEEEEEETTCCS
T ss_pred             hcCCCCcEEEEEeeCCCCC
Confidence            5778999999999987543

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.35  E-value=3.4e-12  Score=119.65  Aligned_cols=117  Identities=15%  Similarity=0.072  Sum_probs=79.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhc---Ccccccccc--ceeeEEEEEEEEe-------------C--C----eeEEEEEe
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLT---GEFEKKYVA--TLGVEVHPLVFHT-------------N--R----GAIRFNVW  278 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~l~i~  278 (385)
                      ..++++++|..++|||||++++.+   +.+.....+  |+...+....+..             +  +    ....+.||
T Consensus         7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii   86 (408)
T 1s0u_A            7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV   86 (408)
T ss_dssp             CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence            468999999999999999999872   233333333  5544444333321             1  1    13679999


Q ss_pred             eCCCccccCcccccccccCcEEEEEEeCCC----hhhhhh----------------------------------------
Q psy125          279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTS----RITYKN----------------------------------------  314 (385)
Q Consensus       279 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----~~s~~~----------------------------------------  314 (385)
                      ||||++.|.......+..+|++|||+|+++    +++++.                                        
T Consensus        87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~  166 (408)
T 1s0u_A           87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKG  166 (408)
T ss_dssp             ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTT
T ss_pred             ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhh
Confidence            999999987766667778899999999995    455554                                        


Q ss_pred             -------hheeccccCCCchHHHHHHHHHHhc
Q psy125          315 -------YYDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       315 -------~~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                             |+++||++|.||+++|++|.+.+..
T Consensus       167 ~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          167 TIAENAPIIPISAHHEANIDVLLKAIQDFIPT  198 (408)
T ss_dssp             STTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred             cCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence                   6899999999999999999987754

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.35  E-value=5.4e-13  Score=113.44  Aligned_cols=114  Identities=12%  Similarity=0.091  Sum_probs=75.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc----------cCccccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK----------FGGLRDG  292 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~  292 (385)
                      ...+++++|.+|||||||++++.+..+...+.++.|.++....+.+++   .+.+|||||+..          +......
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~  101 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGE  101 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHH
Confidence            457999999999999999999887666666778888776555444443   367999999743          2222223


Q ss_pred             cc---ccCcEEEEEEeCCChhhhhh------------------------------------------------hheeccc
Q psy125          293 YY---IQGQCAIIMFDVTSRITYKN------------------------------------------------YYDISAK  321 (385)
Q Consensus       293 ~~---~~~~~~ilv~d~~~~~s~~~------------------------------------------------~~e~Sak  321 (385)
                      |+   +.++++++|+|++++.++.+                                                +++|||+
T Consensus       102 ~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal  181 (210)
T 1pui_A          102 YLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSL  181 (210)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred             HHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeec
Confidence            44   57899999999998765542                                                5679999


Q ss_pred             cCCCchHHHHHHHHHHhc
Q psy125          322 SNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       322 ~~~~v~~~f~~l~~~i~~  339 (385)
                      ++.|++++|.+|.+.+.+
T Consensus       182 ~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          182 KKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             TTBSHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHhh
Confidence            999999999998886643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.35  E-value=1e-12  Score=119.38  Aligned_cols=114  Identities=21%  Similarity=0.273  Sum_probs=82.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccc-cccc-cceeeEEEEEEEEeCCeeEEEEEeeCCCcc----ccCcccccccc---
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFE-KKYV-ATLGVEVHPLVFHTNRGAIRFNVWDTAGQE----KFGGLRDGYYI---  295 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----~~~~~~~~~~~---  295 (385)
                      .+|+++|.+|||||||++++....+. ..+. .|...+..  .+.+++ ...+.||||||+.    ++..+...|++   
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g--~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~  235 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLG--MVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE  235 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEE--EEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEE--EEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence            36889999999999999998755422 1111 22222222  233343 2468999999964    45556666655   


Q ss_pred             cCcEEEEEEeCCC---hhhhhh------------------------------------------------hheeccccCC
Q psy125          296 QGQCAIIMFDVTS---RITYKN------------------------------------------------YYDISAKSNY  324 (385)
Q Consensus       296 ~~~~~ilv~d~~~---~~s~~~------------------------------------------------~~e~Sak~~~  324 (385)
                      .++++|+|||+++   +.++++                                                +++|||+++.
T Consensus       236 ~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~  315 (342)
T 1lnz_A          236 RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTRE  315 (342)
T ss_dssp             HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred             hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCc
Confidence            4999999999998   777654                                                6899999999


Q ss_pred             CchHHHHHHHHHHhcCC
Q psy125          325 NFEKPFLWLARKLIGDP  341 (385)
Q Consensus       325 ~v~~~f~~l~~~i~~~~  341 (385)
                      ||+++|.+|++.+...+
T Consensus       316 gi~eL~~~l~~~l~~~~  332 (342)
T 1lnz_A          316 GLRELLFEVANQLENTP  332 (342)
T ss_dssp             TTHHHHHHHHHHHTSCC
T ss_pred             CHHHHHHHHHHHHhhCc
Confidence            99999999999986654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.32  E-value=2.9e-13  Score=128.55  Aligned_cols=111  Identities=13%  Similarity=0.149  Sum_probs=83.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      +..+++++|..++|||||++++....+.....+.+..+.....+..+  +..+.||||||++.|..++..++..+|++||
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~--~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE--NGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT--SSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC--CEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            34689999999999999999988655443322222111111122222  3457899999999999999999999999999


Q ss_pred             EEeCCC---hhhhhh-----------------------------------------------hheeccccCCCchHHHHH
Q psy125          303 MFDVTS---RITYKN-----------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       303 v~d~~~---~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |||+++   +++++.                                               |+++||++|.||+++|.+
T Consensus        81 VVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~  160 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDA  160 (501)
T ss_dssp             EEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHH
T ss_pred             EeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhh
Confidence            999998   344333                                               678999999999999999


Q ss_pred             HHH
Q psy125          333 LAR  335 (385)
Q Consensus       333 l~~  335 (385)
                      |+.
T Consensus       161 I~~  163 (501)
T 1zo1_I          161 ILL  163 (501)
T ss_dssp             TTT
T ss_pred             hhh
Confidence            875

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.31  E-value=8e-13  Score=129.39  Aligned_cols=88  Identities=23%  Similarity=0.240  Sum_probs=65.8

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCcccccc-----------------------------ccceeeEEEEEEEEeCCee
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY-----------------------------VATLGVEVHPLVFHTNRGA  272 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~  272 (385)
                      ...++|+++|.+|+|||||+++++.....-..                             ....|+|.......+....
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~  244 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  244 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence            45789999999999999999998854211000                             0013444433333444456


Q ss_pred             EEEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125          273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       273 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~  309 (385)
                      +.+.||||||+++|......+++.+|++|+|+|++++
T Consensus       245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g  281 (611)
T 3izq_1          245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN  281 (611)
T ss_dssp             CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHH
T ss_pred             ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCC
Confidence            6789999999999998888899999999999999984

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.31  E-value=9.1e-12  Score=116.86  Aligned_cols=118  Identities=16%  Similarity=0.068  Sum_probs=87.7

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc---Ccccccccc--ceeeEEEEEEEEe-------------C--C----eeEEEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLT---GEFEKKYVA--TLGVEVHPLVFHT-------------N--R----GAIRFNV  277 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~l~i  277 (385)
                      ...++|+++|..++|||||++++++   +.+.....+  |+...+....+..             .  +    ....+.|
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            3568999999999999999999872   334444333  5544444333321             1  1    1367999


Q ss_pred             eeCCCccccCcccccccccCcEEEEEEeCCC----hhhhhh---------------------------------------
Q psy125          278 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS----RITYKN---------------------------------------  314 (385)
Q Consensus       278 ~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----~~s~~~---------------------------------------  314 (385)
                      |||||++.|.......+..+|++|||+|+++    +++++.                                       
T Consensus        88 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~  167 (410)
T 1kk1_A           88 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE  167 (410)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             EECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence            9999999887666666778899999999995    455554                                       


Q ss_pred             --------hheeccccCCCchHHHHHHHHHHhc
Q psy125          315 --------YYDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       315 --------~~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                              ++++||++|.||+++|++|.+.+..
T Consensus       168 ~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          168 GTVAENAPIIPISALHGANIDVLVKAIEDFIPT  200 (410)
T ss_dssp             TSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             hcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence                    6889999999999999999987754

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.30  E-value=2.9e-12  Score=122.33  Aligned_cols=113  Identities=18%  Similarity=0.145  Sum_probs=84.0

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCc-------cccccccceeeEEE--EEEEEeCCeeEEEEEeeCCCccccCccccc
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGE-------FEKKYVATLGVEVH--PLVFHTNRGAIRFNVWDTAGQEKFGGLRDG  292 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~-------~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~  292 (385)
                      ...++++++|..++|||||+++++...       +.....  .|.|..  ...+..+  .+.+.||||||++.|......
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~--~GiTi~~~~~~~~~~--~~~i~iiDtPGh~~~~~~~~~   92 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQK--RGITIDIGFSAFKLE--NYRITLVDAPGHADLIRAVVS   92 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC----------------------CCCEEEET--TEEEEECCCSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCccccccccccccc--CccEEecceEEEEEC--CEEEEEEECCChHHHHHHHHH
Confidence            356899999999999999999987654       111111  122221  1122233  467899999999999888888


Q ss_pred             ccccCcEEEEEEeCCC---hhhhhh-----------------------------------------------hheecccc
Q psy125          293 YYIQGQCAIIMFDVTS---RITYKN-----------------------------------------------YYDISAKS  322 (385)
Q Consensus       293 ~~~~~~~~ilv~d~~~---~~s~~~-----------------------------------------------~~e~Sak~  322 (385)
                      ++..+|++|+|+|+++   +++++.                                               |+++||++
T Consensus        93 ~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~  172 (482)
T 1wb1_A           93 AADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT  172 (482)
T ss_dssp             HTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             HHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcC
Confidence            8999999999999998   555544                                               47899999


Q ss_pred             CCCchHHHHHHHHHHh
Q psy125          323 NYNFEKPFLWLARKLI  338 (385)
Q Consensus       323 ~~~v~~~f~~l~~~i~  338 (385)
                      |.||+++|++|.+.+.
T Consensus       173 g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          173 GFGVDELKNLIITTLN  188 (482)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhhc
Confidence            9999999999999875

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.30  E-value=1.1e-11  Score=113.55  Aligned_cols=114  Identities=18%  Similarity=0.161  Sum_probs=83.3

Q ss_pred             eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCC----------hhhhhcHHHHHHHHHH--hcCCCCEEEEEeCC
Q psy125           56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS----------RITYKNVPNWHRDLVR--VCENIPIVLCGNKV  123 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~----------~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~  123 (385)
                      +.+.+.+|||+|++.++..+..++.+++++|+|+|+++          ..++.+...|+..+..  ...+.|+++++||+
T Consensus       199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~  278 (362)
T 1zcb_A          199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT  278 (362)
T ss_dssp             TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence            46899999999999999999999999999999999999          5677777777777665  24689999999999


Q ss_pred             CCcchh-----------------h-hHHHHHHH--------H---hcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          124 DIKDRK-----------------V-KAKSIVFH--------R---KKNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       124 Dl~~~~-----------------~-~~~~~~~~--------~---~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      |+..++                 . ..+...+.        .   .....++++||+++.|++++|..+.+.+..
T Consensus       279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            986432                 1 22333332        1   234578899999999999999999887753

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.30  E-value=1.5e-12  Score=115.39  Aligned_cols=116  Identities=17%  Similarity=0.302  Sum_probs=66.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhc-Ccccccc-------ccceeeEEEEEEEEeCCeeEEEEEeeCCCccc-------cC
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLT-GEFEKKY-------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK-------FG  287 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~  287 (385)
                      ..++|+++|.+|+|||||+|+++. +.+...+       .+|++.+.....+..++..+.+.||||||+..       +.
T Consensus         7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~   86 (274)
T 3t5d_A            7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ   86 (274)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTH
T ss_pred             cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHH
Confidence            358999999999999999999654 3444444       56666666666665566667899999999832       22


Q ss_pred             ccc-------ccccc-------------cCcEEEEEEeCCChh-hhhh--------------------------------
Q psy125          288 GLR-------DGYYI-------------QGQCAIIMFDVTSRI-TYKN--------------------------------  314 (385)
Q Consensus       288 ~~~-------~~~~~-------------~~~~~ilv~d~~~~~-s~~~--------------------------------  314 (385)
                      .+.       ..|+.             .+|+++++++.+... .-.+                                
T Consensus        87 ~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~~~pvi~V~nK~D~~~~~e~~~~~  166 (274)
T 3t5d_A           87 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFK  166 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTTTSCEEEEESSGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhccCCEEEEEeccCCCCHHHHHHHH
Confidence            222       22332             378899988766521 1111                                


Q ss_pred             -------------hheeccccCCCchHHHHHHHHHHh
Q psy125          315 -------------YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       315 -------------~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                                   ++++||+++.|+++++.+|.+.+.
T Consensus       167 ~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          167 KQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP  203 (274)
T ss_dssp             HHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred             HHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence                         788999999999999999988653

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.29  E-value=2.6e-12  Score=125.06  Aligned_cols=92  Identities=21%  Similarity=0.213  Sum_probs=66.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCcccc----ccccceeeEEEEEEE------------EeCCeeEEEEEeeCCCcccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEK----KYVATLGVEVHPLVF------------HTNRGAIRFNVWDTAGQEKF  286 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~----~~~~~~~~~~~~~~~------------~~~~~~~~l~i~Dt~G~~~~  286 (385)
                      +..+|+++|..++|||||+++++...+..    ....++|.++.....            .++.....+.||||||++.|
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F   83 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF   83 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence            34789999999999999999988554422    122344433322110            00011124899999999999


Q ss_pred             CcccccccccCcEEEEEEeCCC---hhhhhh
Q psy125          287 GGLRDGYYIQGQCAIIMFDVTS---RITYKN  314 (385)
Q Consensus       287 ~~~~~~~~~~~~~~ilv~d~~~---~~s~~~  314 (385)
                      ..++..+++.+|++|+|||+++   +++++.
T Consensus        84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~  114 (594)
T 1g7s_A           84 TTLRKRGGALADLAILIVDINEGFKPQTQEA  114 (594)
T ss_dssp             TTSBCSSSBSCSEEEEEEETTTCCCHHHHHH
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCccHhHHHH
Confidence            9999999999999999999999   777665

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.29  E-value=1.1e-11  Score=114.43  Aligned_cols=114  Identities=17%  Similarity=0.136  Sum_probs=90.2

Q ss_pred             eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCC----------hhhhhcHHHHHHHHHHh--cCCCCEEEEEeCC
Q psy125           56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS----------RITYKNVPNWHRDLVRV--CENIPIVLCGNKV  123 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~----------~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~  123 (385)
                      +.+.+.+|||+|++.++..+..++++++++|+|||+++          ..++.....|+..+...  ..+.|++|++||+
T Consensus       215 ~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~  294 (402)
T 1azs_C          215 DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQ  294 (402)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECH
T ss_pred             CCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEECh
Confidence            35899999999999999999999999999999999999          77888888888887753  4678999999999


Q ss_pred             CCcchhh--------------------------------hHHHHHH-----HHh--------cCCeEEEEcCCCCCChHH
Q psy125          124 DIKDRKV--------------------------------KAKSIVF-----HRK--------KNLQYYDISAKSNYNFEK  158 (385)
Q Consensus       124 Dl~~~~~--------------------------------~~~~~~~-----~~~--------~~~~~~~~Sa~~~~gi~~  158 (385)
                      |+...+.                                ..+...+     ...        ....++++||+++.|+++
T Consensus       295 DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~  374 (402)
T 1azs_C          295 DLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRR  374 (402)
T ss_dssp             HHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHH
T ss_pred             hhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHH
Confidence            9854322                                1122222     111        234677999999999999


Q ss_pred             HHHHHHHHHhc
Q psy125          159 PFLWLARKLIG  169 (385)
Q Consensus       159 l~~~i~~~l~~  169 (385)
                      .|..+...+..
T Consensus       375 vF~~v~~~I~~  385 (402)
T 1azs_C          375 VFNDCRDIIQR  385 (402)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998887643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.29  E-value=7.1e-12  Score=107.39  Aligned_cols=151  Identities=13%  Similarity=0.112  Sum_probs=89.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCC----cccccceeeeE--------EEEEEe------------------CCee
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEK----KYVATLGVEVH--------PLVFHT------------------NRGA   57 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~----~~~~~~g~t~~--------~~~~~~------------------~~~~   57 (385)
                      +..+|+++|.+|||||||+++|+......    .....++.+.+        ......                  ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            34689999999999999999987642111    00111111000        000111                  1123


Q ss_pred             EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh--hhHHHH
Q psy125           58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--VKAKSI  135 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--~~~~~~  135 (385)
                      ..+.+|||+|+...   ...+....+.+++|+|+.....  ....+.. .    .+.|.++++||+|+....  ...+..
T Consensus       109 ~d~iiidt~G~~~~---~~~~~~~~~~~i~vvd~~~~~~--~~~~~~~-~----~~~~~iiv~NK~Dl~~~~~~~~~~~~  178 (221)
T 2wsm_A          109 CDLLLIENVGNLIC---PVDFDLGENYRVVMVSVTEGDD--VVEKHPE-I----FRVADLIVINKVALAEAVGADVEKMK  178 (221)
T ss_dssp             CSEEEEEEEEBSSG---GGGCCCSCSEEEEEEEGGGCTT--HHHHCHH-H----HHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred             CCEEEEeCCCCCCC---CchhccccCcEEEEEeCCCcch--hhhhhhh-h----hhcCCEEEEecccCCcchhhHHHHHH
Confidence            56788898885110   0111135678899999876532  1111111 1    246889999999986532  223333


Q ss_pred             HHHHh--cCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          136 VFHRK--KNLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       136 ~~~~~--~~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      .....  ...+++++|++++.|+++++..|.+.+.
T Consensus       179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~  213 (221)
T 2wsm_A          179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN  213 (221)
T ss_dssp             HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence            33332  2468999999999999999999988764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.29  E-value=1.2e-12  Score=109.78  Aligned_cols=83  Identities=16%  Similarity=0.132  Sum_probs=63.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccc---cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccccccc---
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQ---  296 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~---  296 (385)
                      ..++|+++|.+||||||+++++....+...   +.++.+         .+...+.+.+|||||++.+...+..+++.   
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~  117 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAK  117 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGG
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhhcc
Confidence            568999999999999999999998766442   222221         11134567899999999999888888876   


Q ss_pred             -CcEEEEEEeCC-Chhhhhh
Q psy125          297 -GQCAIIMFDVT-SRITYKN  314 (385)
Q Consensus       297 -~~~~ilv~d~~-~~~s~~~  314 (385)
                       +|++|+|||++ ++.+|.+
T Consensus       118 ~~~~~i~v~d~~~~~~~~~~  137 (193)
T 2ged_A          118 FVKGLIFMVDSTVDPKKLTT  137 (193)
T ss_dssp             GEEEEEEEEETTCCHHHHHH
T ss_pred             cCCEEEEEEECCCCchhHHH
Confidence             89999999999 8888865

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.29  E-value=4.3e-12  Score=128.82  Aligned_cols=116  Identities=16%  Similarity=0.187  Sum_probs=83.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCC--------ccc------ccceeeeEEE----EEE------------eCCee
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEK--------KYV------ATLGVEVHPL----VFH------------TNRGA   57 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~--------~~~------~~~g~t~~~~----~~~------------~~~~~   57 (385)
                      ...+|+|+|+.|+|||||+++|+...-..        .+.      ...|.|....    .+.            .+...
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            45799999999999999999988641100        000      1122232211    122            13347


Q ss_pred             EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125           58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK  126 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~  126 (385)
                      +.+++|||||+.++...+..+++.+|++|+|+|+++...++....|.....   .++|+++++||+|+.
T Consensus        98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred             ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCcc
Confidence            899999999999998888999999999999999999877776554543332   578999999999986

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.28  E-value=1.9e-12  Score=124.46  Aligned_cols=91  Identities=16%  Similarity=0.192  Sum_probs=66.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc------------------Ccccccc--ccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLT------------------GEFEKKY--VATLGVEVHPLVFHTNRGAIRFNVWDTAGQ  283 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~------------------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~  283 (385)
                      ..+|+++|.+|+|||||+++++.                  ..+....  ....|.+.......+....+.+.||||||+
T Consensus        13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~   92 (528)
T 3tr5_A           13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGH   92 (528)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCc
Confidence            46899999999999999999861                  1111100  001233333333334445677999999999


Q ss_pred             cccCcccccccccCcEEEEEEeCCChhhhhh
Q psy125          284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       284 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      ..|......+++.+|++|+|+|+++..+++.
T Consensus        93 ~df~~~~~~~l~~aD~allVvDa~~g~~~~t  123 (528)
T 3tr5_A           93 ADFTEDTYRTLTAVDSALMVIDAAKGVEPRT  123 (528)
T ss_dssp             TTCCHHHHHGGGGCSEEEEEEETTTCSCHHH
T ss_pred             hhHHHHHHHHHHhCCEEEEEEeCCCCCCHHH
Confidence            9999999999999999999999998776665

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.28  E-value=8e-12  Score=114.16  Aligned_cols=102  Identities=11%  Similarity=-0.004  Sum_probs=65.1

Q ss_pred             eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH----
Q psy125           57 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----  132 (385)
Q Consensus        57 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~----  132 (385)
                      ++.+.++||||.....   ......+|++++|+|.......+.+..   ..    .+.|.++|+||+|+.......    
T Consensus       148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKK---GL----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCH---HH----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHH---hh----hcccCEEEEECCCCCChHHHHHHHH
Confidence            5679999999975432   234689999999999876533222111   11    135788999999987542221    


Q ss_pred             HHHHHHHh-c------CCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          133 KSIVFHRK-K------NLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       133 ~~~~~~~~-~------~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      +....... .      ..+++++||+++.|+++++..|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            11111111 1      357889999999999999999988664

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.28  E-value=7.9e-12  Score=123.58  Aligned_cols=194  Identities=12%  Similarity=0.144  Sum_probs=116.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccc-c--------------------------------------------
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVA-T--------------------------------------------   41 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~-~--------------------------------------------   41 (385)
                      ...++|+++|..++|||||+|+|++..+.+.... +                                            
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            3457999999999999999999888655221110 0                                            


Q ss_pred             ----ceeeeEEEEEEeC-CeeEEEEEEeCCCccccc-------------cchhhhh-ccCcEEEEEEeCCChhhhhcHHH
Q psy125           42 ----LGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFG-------------GLRDGYY-IQGQCAIIMFDVTSRITYKNVPN  102 (385)
Q Consensus        42 ----~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~-------------~~~~~~~-~~~d~illV~d~~~~~~~~~~~~  102 (385)
                          .+++.......+. .....+.++||||.....             .+...++ ..+|++++|+|++..........
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                0001011111110 012247899999975411             1223333 57899999999987644433223


Q ss_pred             HHHHHHHhcCCCCEEEEEeCCCCcchhhhH-HHHHHHHh-----cCCeEEEEcCCCCCChHHHHHHHHHH---HhcCCCc
Q psy125          103 WHRDLVRVCENIPIVLCGNKVDIKDRKVKA-KSIVFHRK-----KNLQYYDISAKSNYNFEKPFLWLARK---LIGDPNL  173 (385)
Q Consensus       103 ~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~-~~~~~~~~-----~~~~~~~~Sa~~~~gi~~l~~~i~~~---l~~~~~~  173 (385)
                      +...+..  .+.|+++|+||+|+....... .... ...     ....++.+||+++.|+++++..+...   +...|.+
T Consensus       209 ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y  285 (772)
T 3zvr_A          209 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY  285 (772)
T ss_dssp             HHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHH-HHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch
Confidence            3444332  478999999999987543321 1111 001     11256789999999999999998873   4444332


Q ss_pred             ccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchh
Q psy125          174 EFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDED  214 (385)
Q Consensus       174 ~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~  214 (385)
                                 ....|...+..+.+.+++.....+.++.|+
T Consensus       286 -----------d~ltDr~g~~~LaEiLrEkL~~hi~~ELP~  315 (772)
T 3zvr_A          286 -----------RHLADRMGTPYLQKVLNQQLTNHIRDTLPG  315 (772)
T ss_dssp             -----------GGGGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------hhhhhcccHHHHHHHHHHHHHHHHHhhCcc
Confidence                       123355667777777777776666666665

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.27  E-value=5.4e-12  Score=115.43  Aligned_cols=114  Identities=13%  Similarity=0.021  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc----c---hhhhhcc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----L---RDGYYIQ   81 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~----~---~~~~~~~   81 (385)
                      ..+|+|||.||||||||+|+|.+..  ..+.+.+++|+++........+..+.++||||......    +   ....++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            3589999999999999999966532  55678889999999887777788999999999753221    1   2234578


Q ss_pred             CcEEEEEEeCCChhhhhcHHHHHHHHHH---hcCCCCEEEEEeCCCCc
Q psy125           82 GQCAIIMFDVTSRITYKNVPNWHRDLVR---VCENIPIVLCGNKVDIK  126 (385)
Q Consensus        82 ~d~illV~d~~~~~~~~~~~~~~~~l~~---~~~~~~~ilv~nK~Dl~  126 (385)
                      +|++++|+|++++....  .....++..   .....|.++++||.|..
T Consensus       150 ad~il~vvD~~~p~~~~--~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHK--QIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             CSEEEEEEETTSHHHHH--HHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             cCccccccccCccHHHH--HHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            99999999999874321  112222222   23467888999999963

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.27  E-value=9.5e-12  Score=117.46  Aligned_cols=88  Identities=17%  Similarity=0.151  Sum_probs=65.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCc--cccc---------------------------cccceeeEEEEEEEEeCCeeE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YVATLGVEVHPLVFHTNRGAI  273 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~  273 (385)
                      ..++++++|..++|||||+++++...  +...                           .....|.|.......+.....
T Consensus        16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~   95 (439)
T 3j2k_7           16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKK   95 (439)
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCe
Confidence            56899999999999999999985321  1110                           011134455444444555566


Q ss_pred             EEEEeeCCCccccCcccccccccCcEEEEEEeCCChh
Q psy125          274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI  310 (385)
Q Consensus       274 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~  310 (385)
                      .+.||||||+++|......+++.+|++|||+|+++..
T Consensus        96 ~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~  132 (439)
T 3j2k_7           96 HFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGE  132 (439)
T ss_pred             EEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCc
Confidence            8999999999999888888999999999999999863

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.26  E-value=3.7e-12  Score=114.45  Aligned_cols=114  Identities=14%  Similarity=0.187  Sum_probs=78.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccc----ccccee----------------------eEEE--------------
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLG----------------------VEVH--------------  262 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~----~~~~~~----------------------~~~~--------------  262 (385)
                      ...+|+++|.+|||||||++++++..+...    ....++                      +++.              
T Consensus        25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~  104 (299)
T 2aka_B           25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence            457999999999999999999997776321    111121                      1110              


Q ss_pred             ---------EEEEEeC-CeeEEEEEeeCCCccc-------------cCcccccccccCcEEE-EEEeCCChhhhhh----
Q psy125          263 ---------PLVFHTN-RGAIRFNVWDTAGQEK-------------FGGLRDGYYIQGQCAI-IMFDVTSRITYKN----  314 (385)
Q Consensus       263 ---------~~~~~~~-~~~~~l~i~Dt~G~~~-------------~~~~~~~~~~~~~~~i-lv~d~~~~~s~~~----  314 (385)
                               ...+.+. .....+.||||||+..             +..+...|++.++++| +|+|+++..+.++    
T Consensus       105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~  184 (299)
T 2aka_B          105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence                     0000000 0125689999999753             3445556888998777 6999987554333    


Q ss_pred             --------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          315 --------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       315 --------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                                                                  ++++||++|.|++++|.+|.+.
T Consensus       185 ~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          185 AKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHCTTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHhCCCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence                                                        6789999999999999999873

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.25  E-value=1.9e-12  Score=122.37  Aligned_cols=90  Identities=21%  Similarity=0.286  Sum_probs=63.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC--cccccc---------------------------ccceeeEEEEEEEEeCCeeE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------VATLGVEVHPLVFHTNRGAI  273 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~  273 (385)
                      ..++++++|..++|||||+++++..  .+...+                           ....|.|.......+....+
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            4689999999999999999998853  232111                           00123343333334445566


Q ss_pred             EEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhh
Q psy125          274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK  313 (385)
Q Consensus       274 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~  313 (385)
                      .+.||||||+++|......+++.+|++|+|||+++ .+|+
T Consensus        85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe  123 (435)
T 1jny_A           85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYE  123 (435)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHH
T ss_pred             EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-Cccc
Confidence            79999999999999888889999999999999999 5555

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.24  E-value=5e-12  Score=118.03  Aligned_cols=89  Identities=15%  Similarity=0.113  Sum_probs=65.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC-------ccccc-------cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG-------EFEKK-------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG  288 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~-------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~  288 (385)
                      ..++++++|..++|||||+++++..       .|...       .....|.|.......+......+.||||||+++|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            3589999999999999999998753       11110       011234444444444555556789999999999988


Q ss_pred             ccccccccCcEEEEEEeCCChhh
Q psy125          289 LRDGYYIQGQCAIIMFDVTSRIT  311 (385)
Q Consensus       289 ~~~~~~~~~~~~ilv~d~~~~~s  311 (385)
                      ....+++.+|++|+|+|+++...
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~  104 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPM  104 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSC
T ss_pred             HHHhhHhhCCEEEEEEECCCCCC
Confidence            77888999999999999998543

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.23  E-value=1.1e-11  Score=111.35  Aligned_cols=96  Identities=14%  Similarity=0.115  Sum_probs=76.1

Q ss_pred             HHHhcCccccc-------cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCC-------
Q psy125          242 KRHLTGEFEKK-------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT-------  307 (385)
Q Consensus       242 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~-------  307 (385)
                      .|+....|...       ..+|+|.....  +.+  +.+.+.||||+||++++.+|..||++++|+|+|||++       
T Consensus       133 ~Ri~~~~Y~PT~~Dilr~r~~TiGi~~~~--~~~--~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~  208 (327)
T 3ohm_A          133 DRVADPSYLPTQQDVLRVRVPTTGIIEYP--FDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLV  208 (327)
T ss_dssp             HHHHSTTCCCCHHHHTTCCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCS
T ss_pred             HHHhccCCCccccchhcccCceeeEEEEE--EEe--eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECcccccccc
Confidence            45555555544       56777754333  233  4578999999999999999999999999999999765       


Q ss_pred             ---Chhhhhh----------------------------------------------------------------------
Q psy125          308 ---SRITYKN----------------------------------------------------------------------  314 (385)
Q Consensus       308 ---~~~s~~~----------------------------------------------------------------------  314 (385)
                         +..+|++                                                                      
T Consensus       209 d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~  288 (327)
T 3ohm_A          209 ESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDS  288 (327)
T ss_dssp             SCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTT
T ss_pred             ccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccc
Confidence               5566655                                                                      


Q ss_pred             -----hheeccccCCCchHHHHHHHHHHhcCC
Q psy125          315 -----YYDISAKSNYNFEKPFLWLARKLIGDP  341 (385)
Q Consensus       315 -----~~e~Sak~~~~v~~~f~~l~~~i~~~~  341 (385)
                           +++|||+++.||+++|..+++.|+++.
T Consensus       289 ~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          289 DKIIYSHFTCATDTENIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             TSCEEEEECCTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cCCcEEEEEEeecCHHHHHHHHHHHHHHHHHh
Confidence                 688999999999999999999998764

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.22  E-value=3.7e-12  Score=119.35  Aligned_cols=92  Identities=14%  Similarity=0.086  Sum_probs=68.2

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC--------ccccc-------cccceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTG--------EFEKK-------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF  286 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  286 (385)
                      ...++++++|..++|||||+++++..        .|...       ...+.|.+.......+......+.||||||+++|
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f   88 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   88 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence            35689999999999999999998752        22110       0123444544444455555667899999999999


Q ss_pred             CcccccccccCcEEEEEEeCCChhhhh
Q psy125          287 GGLRDGYYIQGQCAIIMFDVTSRITYK  313 (385)
Q Consensus       287 ~~~~~~~~~~~~~~ilv~d~~~~~s~~  313 (385)
                      ......+++.+|++|+|+|++++...+
T Consensus        89 ~~~~~~~~~~aD~~ilVvda~~g~~~q  115 (405)
T 2c78_A           89 IKNMITGAAQMDGAILVVSAADGPMPQ  115 (405)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHH
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHH
Confidence            888888899999999999999865433

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.22  E-value=3.9e-11  Score=105.62  Aligned_cols=112  Identities=13%  Similarity=-0.002  Sum_probs=67.6

Q ss_pred             EEEEEEeCCCccccccchh------hhhccCcEEEEEEeCCChhhhhcHHHH---HHHHHHhcCCCCEEEEEeCCCCcch
Q psy125           58 IRFNVWDTAGQEKFGGLRD------GYYIQGQCAIIMFDVTSRITYKNVPNW---HRDLVRVCENIPIVLCGNKVDIKDR  128 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~------~~~~~~d~illV~d~~~~~~~~~~~~~---~~~l~~~~~~~~~ilv~nK~Dl~~~  128 (385)
                      +.+.+|||||.........      ..+.. +++++++|.............   ..... ...+.|+++|+||+|+...
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~D~~~~  186 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLSE  186 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCCH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEeccccccc
Confidence            5789999999865322111      23355 788888887543222221111   11111 1136899999999998654


Q ss_pred             hhhHHHHHH----------------------------HHhc--CCeEEEEcCCCCCChHHHHHHHHHHHhcCC
Q psy125          129 KVKAKSIVF----------------------------HRKK--NLQYYDISAKSNYNFEKPFLWLARKLIGDP  171 (385)
Q Consensus       129 ~~~~~~~~~----------------------------~~~~--~~~~~~~Sa~~~~gi~~l~~~i~~~l~~~~  171 (385)
                      ....+...+                            ....  ..+++++||+++.|+++++.+|.+.+...+
T Consensus       187 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~  259 (262)
T 1yrb_A          187 EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCG  259 (262)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcccc
Confidence            321111111                            1222  237899999999999999999998875543

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.22  E-value=5.1e-11  Score=109.12  Aligned_cols=82  Identities=13%  Similarity=-0.012  Sum_probs=53.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEE--EEeC-------------------CeeEEEEEEeCCCc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV--FHTN-------------------RGAIRFNVWDTAGQ   68 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~--~~~~-------------------~~~~~~~i~Dt~g~   68 (385)
                      ++|+|+|.+|||||||+|+|.+...  .....++.|.....  ....                   .....+.+|||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~--~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANA--LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHT--TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            5899999999999999999776431  11111122221111  1111                   13467999999998


Q ss_pred             ccccc----ch---hhhhccCcEEEEEEeCCC
Q psy125           69 EKFGG----LR---DGYYIQGQCAIIMFDVTS   93 (385)
Q Consensus        69 ~~~~~----~~---~~~~~~~d~illV~d~~~   93 (385)
                      .....    +.   ...++++|++++|+|+++
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            75432    22   235689999999999985

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.22  E-value=4.3e-12  Score=113.78  Aligned_cols=121  Identities=18%  Similarity=0.310  Sum_probs=59.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC-cccccc--------ccceeeEEEEEEEEeCCeeEEEEEeeCCCc-------ccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG-EFEKKY--------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQ-------EKF  286 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~-------~~~  286 (385)
                      ..++|+++|++|+|||||++++.+. .+...+        .++.+...........+....+++|||+|+       +++
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            3589999999999999999996643 444332        122211111122222344568999999998       666


Q ss_pred             Ccccc-------cccccC-------------cEEEEEEeCCChhhhhh--------------------------------
Q psy125          287 GGLRD-------GYYIQG-------------QCAIIMFDVTSRITYKN--------------------------------  314 (385)
Q Consensus       287 ~~~~~-------~~~~~~-------------~~~ilv~d~~~~~s~~~--------------------------------  314 (385)
                      ..+..       .|++..             ++++++.+.+. .+|+.                                
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~~~~e~~~  175 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAIHNKVNIVPVIAKADTLTLKERER  175 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHHTTTSCEEEEECCGGGSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHH
Confidence            66665       454433             33333333222 11111                                


Q ss_pred             ---------------hheeccccCCCchHHHHHHHHHHhcCCCccc
Q psy125          315 ---------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEF  345 (385)
Q Consensus       315 ---------------~~e~Sak~~~~v~~~f~~l~~~i~~~~~~~~  345 (385)
                                     |+++||++| ||+++|.++++.+....++..
T Consensus       176 ~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~av  220 (301)
T 2qnr_A          176 LKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPFSV  220 (301)
T ss_dssp             HHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSEEC
T ss_pred             HHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCceE
Confidence                           899999999 999999999999987655443

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.20  E-value=5.9e-11  Score=101.98  Aligned_cols=151  Identities=15%  Similarity=0.160  Sum_probs=83.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeE------------EEEEEeC-Ce------------------
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH------------PLVFHTN-RG------------------   56 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~------------~~~~~~~-~~------------------   56 (385)
                      +.++|+|+|.+|||||||+++|+...+.....++.+.+..            ......+ ..                  
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~  116 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL  116 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence            4589999999999999999998876444333333332211            0111111 00                  


Q ss_pred             -eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh--hhHH
Q psy125           57 -AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--VKAK  133 (385)
Q Consensus        57 -~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--~~~~  133 (385)
                       ...+.++|++|.-..   ...+-...+..+.++++........  .. ...    -..|.++++||+|+....  ...+
T Consensus       117 ~~~d~~~id~~g~i~~---~~s~~~~~~~~~~v~~~~~~~~~~~--~~-~~~----~~~~~iiv~NK~Dl~~~~~~~~~~  186 (226)
T 2hf9_A          117 DEIDLLFIENVGNLIC---PADFDLGTHKRIVVISTTEGDDTIE--KH-PGI----MKTADLIVINKIDLADAVGADIKK  186 (226)
T ss_dssp             GGCSEEEEECCSCSSG---GGGCCCSCSEEEEEEEGGGCTTTTT--TC-HHH----HTTCSEEEEECGGGHHHHTCCHHH
T ss_pred             CCCCEEEEeCCCCccC---cchhhhccCcEEEEEecCcchhhHh--hh-hhH----hhcCCEEEEeccccCchhHHHHHH
Confidence             113445555552100   0011112333455566432211110  00 111    146789999999986542  2233


Q ss_pred             HHHHHHh--cCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          134 SIVFHRK--KNLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       134 ~~~~~~~--~~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      ...+...  ...+++++||+++.|+++++..|.+.+.
T Consensus       187 ~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          187 MENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             HHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            3334333  2568999999999999999999988764

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.20  E-value=3.2e-11  Score=110.74  Aligned_cols=111  Identities=17%  Similarity=0.020  Sum_probs=75.4

Q ss_pred             eE-EEEECCCCCCHHHHHHHHhcCccccccccceeeE--EEEEEEEeCCeeEEEEEeeCCCccc---------cCccccc
Q psy125          225 FK-CVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE--VHPLVFHTNRGAIRFNVWDTAGQEK---------FGGLRDG  292 (385)
Q Consensus       225 ~~-i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~  292 (385)
                      ++ ++++|.+|||||||++++.+..+..  ....++|  .....+.+++  ..+.+|||+|+.+         |..... 
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~~--~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-  253 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQKV--DTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-  253 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCccc--cCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-
Confidence            45 9999999999999999988665421  1222333  2334455555  4678999999732         222222 


Q ss_pred             ccccCcEEEEEEeCCChh--hhhh----------------------------------------------------hhee
Q psy125          293 YYIQGQCAIIMFDVTSRI--TYKN----------------------------------------------------YYDI  318 (385)
Q Consensus       293 ~~~~~~~~ilv~d~~~~~--s~~~----------------------------------------------------~~e~  318 (385)
                      ++..+|++++|+|++++.  +++.                                                    +++|
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  333 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI  333 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            578999999999999876  3321                                                    1468


Q ss_pred             ccccCCCchHHHHHHHHHHhcC
Q psy125          319 SAKSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       319 Sak~~~~v~~~f~~l~~~i~~~  340 (385)
                      ||++|.|++++|.+|.+.+...
T Consensus       334 SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          334 SALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ECCCCcCHHHHHHHHHHHhccc
Confidence            9999999999999998877554

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.18  E-value=6.1e-12  Score=124.09  Aligned_cols=114  Identities=18%  Similarity=0.184  Sum_probs=86.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc--CCCCC--------cc------cccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT--GEFEK--------KY------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL   74 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~--~~~~~--------~~------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~   74 (385)
                      +|+|+|+.++|||||..+|+.  +....        .+      ....|+|.........+++..++++||||+.+|...
T Consensus         4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~E   83 (638)
T 3j25_A            4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLAE   83 (638)
T ss_dssp             CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHHH
Confidence            689999999999999999863  21110        01      112356666666777888899999999999999888


Q ss_pred             hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125           75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~  127 (385)
                      ....++-+|++|+|+|+......+....|.....   .++|.++++||+|...
T Consensus        84 v~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~---~~lp~i~~INKmDr~~  133 (638)
T 3j25_A           84 VYRSLSVLDGAILLISAKDGVQAQTRILFHALRK---MGIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHH---HTCSCEECCEECCSSS
T ss_pred             HHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHH---cCCCeEEEEecccccc
Confidence            8889999999999999998765554444444332   3789999999999753

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.18  E-value=2.8e-11  Score=110.41  Aligned_cols=52  Identities=17%  Similarity=0.210  Sum_probs=42.5

Q ss_pred             ccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125          254 VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~  309 (385)
                      .+|+|....  .+.++  .+.+.||||+||++++.+|..||++++++|||||+++.
T Consensus       178 ~~T~Gi~~~--~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~  229 (353)
T 1cip_A          178 VKTTGIVET--HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDY  229 (353)
T ss_dssp             CCCCSEEEE--EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGG
T ss_pred             CceeceEEE--EEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccc
Confidence            456665432  33333  67899999999999999999999999999999999994

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=99.18  E-value=9.4e-12  Score=110.88  Aligned_cols=112  Identities=14%  Similarity=0.167  Sum_probs=79.4

Q ss_pred             chhhhhccCcEEEEEEeCCChhhhhc-HHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----hHHHHHHHHhcCCeEEEE
Q psy125           74 LRDGYYIQGQCAIIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----KAKSIVFHRKKNLQYYDI  148 (385)
Q Consensus        74 ~~~~~~~~~d~illV~d~~~~~~~~~-~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~~~~~~~~~~  148 (385)
                      +.+..+.++|.+++|+|+.++....+ +..++...  ...+++.++|+||+|+.+...    ...+...+...+++++.+
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~--~~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~  156 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLV--EANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLT  156 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHH--HTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEEC
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHH--HHCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEE
Confidence            44557889999999999997754332 23333222  226889999999999976533    345566666678899999


Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEE
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCV  228 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~  228 (385)
                      |+.++.|+++++..+                                                           ..-.++
T Consensus       157 sa~~~~g~~~L~~~~-----------------------------------------------------------~G~~~~  177 (307)
T 1t9h_A          157 SSKDQDSLADIIPHF-----------------------------------------------------------QDKTTV  177 (307)
T ss_dssp             CHHHHTTCTTTGGGG-----------------------------------------------------------TTSEEE
T ss_pred             ecCCCCCHHHHHhhc-----------------------------------------------------------CCCEEE
Confidence            998888765432210                                                           012589


Q ss_pred             EECCCCCCHHHHHHHHhc
Q psy125          229 LVGDGGTGKTTFVKRHLT  246 (385)
Q Consensus       229 ~~G~~~vgks~~~~~~~~  246 (385)
                      ++|++|||||||+|.+..
T Consensus       178 lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          178 FAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             EEESHHHHHHHHHHHHCC
T ss_pred             EECCCCCCHHHHHHHhcc
Confidence            999999999999999764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.17  E-value=1.2e-11  Score=116.80  Aligned_cols=88  Identities=20%  Similarity=0.274  Sum_probs=61.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCc---cccc---------cccc-------------------eeeEEEEEEEEeCCe
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGE---FEKK---------YVAT-------------------LGVEVHPLVFHTNRG  271 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~---~~~~---------~~~~-------------------~~~~~~~~~~~~~~~  271 (385)
                      ..++++++|..++|||||+++++.+.   +...         ...+                   .|.|.......+...
T Consensus        23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~  102 (434)
T 1zun_B           23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA  102 (434)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred             CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence            45899999999999999999987543   1100         0011                   112221112223334


Q ss_pred             eEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChh
Q psy125          272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI  310 (385)
Q Consensus       272 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~  310 (385)
                      ...+.||||||+++|......++..+|++|+|+|++++.
T Consensus       103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~  141 (434)
T 1zun_B          103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGV  141 (434)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCS
T ss_pred             CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence            567899999999999888888899999999999999853

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.17  E-value=1.9e-10  Score=115.01  Aligned_cols=114  Identities=21%  Similarity=0.192  Sum_probs=78.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC--------CC--Ccc------cccceeeeEEEEEEeCC-------eeEEEEEEeCC
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGE--------FE--KKY------VATLGVEVHPLVFHTNR-------GAIRFNVWDTA   66 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~--------~~--~~~------~~~~g~t~~~~~~~~~~-------~~~~~~i~Dt~   66 (385)
                      -+|+|+|+.++|||||..+|+...        ..  ..+      ....|+|.........+       +++.++++|||
T Consensus        14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP   93 (709)
T 4fn5_A           14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP   93 (709)
T ss_dssp             EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence            479999999999999999987321        00  001      12234444333333322       36899999999


Q ss_pred             CccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125           67 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK  126 (385)
Q Consensus        67 g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~  126 (385)
                      |+.+|.......++-+|++|+|+|+......+...-|.....   .++|.++++||+|..
T Consensus        94 GHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~---~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           94 GHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANK---YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             SCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH---HTCCEEEEEECSSST
T ss_pred             CCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHH---cCCCeEEEEcccccc
Confidence            999998888889999999999999998766555444554433   489999999999974

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.17  E-value=2.1e-11  Score=106.28  Aligned_cols=52  Identities=23%  Similarity=0.238  Sum_probs=47.7

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE  205 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~  205 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...
T Consensus       143 ~~~~LSgGq~qRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~l~~  194 (256)
T 1vpl_A          143 RVSTYSKGMVRKLLIARALMVNPRLAI-----LDEPTSGLDVLNAREVRKILKQASQ  194 (256)
T ss_dssp             BGGGCCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCccccCHHHHHHHHHHHHHHHh
Confidence            355678999999999999999999999     9999999999999999999988753

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.17  E-value=3.5e-11  Score=109.31  Aligned_cols=53  Identities=19%  Similarity=0.179  Sum_probs=48.6

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      .....+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       160 ~~~~LSGGqkQRVaIArAL~~~P~lLL-----lDEPTs~LD~~~~~~i~~lL~~l~~~  212 (366)
T 3tui_C          160 YPSNLSGGQKQRVAIARALASNPKVLL-----CDQATSALDPATTRSILELLKDINRR  212 (366)
T ss_dssp             CTTTSCHHHHHHHHHHHHTTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEE-----EECCCccCCHHHHHHHHHHHHHHHHh
Confidence            456788999999999999999999999     99999999999999999999987654

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.16  E-value=2.9e-11  Score=106.44  Aligned_cols=88  Identities=17%  Similarity=0.260  Sum_probs=64.0

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccc------
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI------  295 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------  295 (385)
                      ...++|+++|.+|+||||++++++...+.. ..+..+++.......+...+..+.||||||+..+......+++      
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVR-VSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCSC-CCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCcc-cCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            356999999999999999999998766422 2233334443333333334557899999999988877666654      


Q ss_pred             ---cCcEEEEEEeCCChh
Q psy125          296 ---QGQCAIIMFDVTSRI  310 (385)
Q Consensus       296 ---~~~~~ilv~d~~~~~  310 (385)
                         ++|++|+|+|++...
T Consensus       113 ~~~~~~~il~V~~~d~~~  130 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA  130 (262)
T ss_dssp             TTCEECEEEEEEESSCSC
T ss_pred             hcCCCCEEEEEEcCCCCC
Confidence               899999999997643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.16  E-value=3.5e-11  Score=103.76  Aligned_cols=53  Identities=21%  Similarity=0.214  Sum_probs=48.5

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       142 ~~~~LSgGq~QRv~iAral~~~p~lll-----lDEPts~LD~~~~~~i~~~l~~l~~~  194 (235)
T 3tif_A          142 KPNQLSGGQQQRVAIARALANNPPIIL-----ADQPTWALDSKTGEKIMQLLKKLNEE  194 (235)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHHH
Confidence            456778999999999999999999999     99999999999999999999887643

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.14  E-value=4.3e-11  Score=109.48  Aligned_cols=54  Identities=13%  Similarity=0.244  Sum_probs=48.7

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ......+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       129 r~p~~LSGGqrQRVaiArAL~~~P~lLL-----LDEPts~LD~~~~~~l~~~l~~l~~~  182 (381)
T 3rlf_A          129 RKPKALSGGQRQRVAIGRTLVAEPSVFL-----LDEPLSNLDAALRVQMRIEISRLHKR  182 (381)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CChhHCCHHHHHHHHHHHHHHcCCCEEE-----EECCCcCCCHHHHHHHHHHHHHHHHh
Confidence            3456778999999999999999999999     99999999999999999999887654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.14  E-value=4e-11  Score=105.25  Aligned_cols=52  Identities=23%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             CCCCCChHHHHHHHHHHHhc------CCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          150 AKSNYNFEKPFLWLARKLIG------DPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~------~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ..+.+|+++++..|++++..      +|++++     +|||++++|+..+..+.+.+++...+
T Consensus       139 ~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl-----lDEPts~LD~~~~~~i~~~l~~l~~~  196 (266)
T 4g1u_C          139 YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF-----LDEPTSALDLYHQQHTLRLLRQLTRQ  196 (266)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE-----ECCCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhcccccCCCCCEEE-----EeCccccCCHHHHHHHHHHHHHHHHc
Confidence            45678999999999999999      999999     99999999999999999999887654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.13  E-value=6.1e-11  Score=107.76  Aligned_cols=53  Identities=15%  Similarity=0.181  Sum_probs=48.1

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       142 ~~~~LSGGq~QRvalArAL~~~P~lLL-----LDEP~s~LD~~~r~~l~~~l~~l~~~  194 (355)
T 1z47_A          142 FPHELSGGQQQRVALARALAPRPQVLL-----FDEPFAAIDTQIRRELRTFVRQVHDE  194 (355)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHHHHHcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            345688999999999999999999999     99999999999999999999887543

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.13  E-value=4.2e-11  Score=102.51  Aligned_cols=54  Identities=20%  Similarity=0.155  Sum_probs=48.5

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ....+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       136 ~~~~~LSgGq~qrv~laral~~~p~lll-----LDEPt~~LD~~~~~~~~~~l~~l~~~  189 (224)
T 2pcj_A          136 RKPYELSGGEQQRVAIARALANEPILLF-----ADEPTGNLDSANTKRVMDIFLKINEG  189 (224)
T ss_dssp             CCGGGSCHHHHHHHHHHHHTTTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCCCCCCHHHHHHHHHHHHHHHHC
Confidence            3456788999999999999999999999     99999999999999999999887543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.13  E-value=1.1e-11  Score=117.69  Aligned_cols=87  Identities=18%  Similarity=0.271  Sum_probs=63.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC--ccccc------------------c----c-----cceeeEEEEEEEEeCCeeE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEKK------------------Y----V-----ATLGVEVHPLVFHTNRGAI  273 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~~------------------~----~-----~~~~~~~~~~~~~~~~~~~  273 (385)
                      ..++++++|..++|||||+++++..  .+...                  +    +     ...|.|.......+.....
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~   85 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence            4689999999999999999998753  22110                  0    0     0122332222223344556


Q ss_pred             EEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125          274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       274 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~  309 (385)
                      .+.||||||+++|......++..+|++|||+|++++
T Consensus        86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g  121 (458)
T 1f60_A           86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG  121 (458)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcC
Confidence            799999999999988888899999999999999986

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.13  E-value=9.3e-11  Score=103.19  Aligned_cols=52  Identities=25%  Similarity=0.178  Sum_probs=48.0

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      ....+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++..
T Consensus       139 ~~~~~LSgGqkQRv~iAraL~~~P~lLl-----LDEPts~LD~~~~~~i~~~l~~l~  190 (275)
T 3gfo_A          139 KPTHCLSFGQKKRVAIAGVLVMEPKVLI-----LDEPTAGLDPMGVSEIMKLLVEMQ  190 (275)
T ss_dssp             SBGGGSCHHHHHHHHHHHHHTTCCSEEE-----EECTTTTCCHHHHHHHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHHcCCCEEE-----EECccccCCHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999     999999999999999999998876

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.12  E-value=1.5e-11  Score=120.04  Aligned_cols=89  Identities=16%  Similarity=0.182  Sum_probs=47.3

Q ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCc--cccc---------------------------cccceeeEEEEEEEEeCCe
Q psy125          221 DMPSFKCVLVGDGGTGKTTFVKRHLTGE--FEKK---------------------------YVATLGVEVHPLVFHTNRG  271 (385)
Q Consensus       221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~  271 (385)
                      ....++|+++|.+++|||||+++++...  +...                           .....|+|.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            4467899999999999999999986321  0000                           0012345555444444545


Q ss_pred             eEEEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125          272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       272 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~  309 (385)
                      ...+.||||||+++|......+++.+|++|||+|++++
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g  291 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQN  291 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEEC
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence            67889999999999998888899999999999999964

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.12  E-value=2.2e-11  Score=124.13  Aligned_cols=91  Identities=15%  Similarity=0.066  Sum_probs=63.8

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCc-------ccc-------ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGE-------FEK-------KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG  287 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  287 (385)
                      ...++|+++|..++|||||+++++...       +..       ....+.|.|.....+.++.....+.||||||+++|.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~  373 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV  373 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence            456899999999999999999987531       100       112344555444444455556778999999999998


Q ss_pred             cccccccccCcEEEEEEeCCChhhh
Q psy125          288 GLRDGYYIQGQCAIIMFDVTSRITY  312 (385)
Q Consensus       288 ~~~~~~~~~~~~~ilv~d~~~~~s~  312 (385)
                      .....+++.+|++|+|+|++++...
T Consensus       374 ~~mi~gas~AD~aILVVDAtdGv~~  398 (1289)
T 3avx_A          374 KNMITGAAQMDGAILVVAATDGPMP  398 (1289)
T ss_dssp             HHHHHTSCCCSEEEEEEETTTCSCT
T ss_pred             HHHHHHHhhCCEEEEEEcCCccCcH
Confidence            8878889999999999999986443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.12  E-value=1.5e-10  Score=102.25  Aligned_cols=86  Identities=17%  Similarity=0.245  Sum_probs=63.6

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc---------
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG---------  292 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~---------  292 (385)
                      ...++|+++|.+|+|||||+++++...+. .+.++.++++....+.+...++.+.||||||+..+..+...         
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            34689999999999999999998866542 23344555555444555555678999999999887654432         


Q ss_pred             ccccCcEEEEEEeCCC
Q psy125          293 YYIQGQCAIIMFDVTS  308 (385)
Q Consensus       293 ~~~~~~~~ilv~d~~~  308 (385)
                      +++++|++|+|||++.
T Consensus       116 ~~~~~d~il~v~~~d~  131 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDA  131 (270)
T ss_dssp             TTCEECEEEEEEESSC
T ss_pred             hcCCCCEEEEEEeCCC
Confidence            2458999999999975

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.11  E-value=6.4e-11  Score=108.02  Aligned_cols=54  Identities=19%  Similarity=0.212  Sum_probs=48.7

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ....+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       129 r~~~~LSGGq~QRvalArAL~~~P~lLL-----LDEP~s~LD~~~r~~l~~~l~~l~~~  182 (362)
T 2it1_A          129 RYPWQLSGGQQQRVAIARALVKEPEVLL-----LDEPLSNLDALLRLEVRAELKRLQKE  182 (362)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHHHHHHcCCCEEE-----EECccccCCHHHHHHHHHHHHHHHHh
Confidence            3456788999999999999999999999     99999999999999999999887543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.11  E-value=3.4e-11  Score=108.55  Aligned_cols=68  Identities=16%  Similarity=0.245  Sum_probs=52.2

Q ss_pred             HHhcCccccc-------cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCC--------
Q psy125          243 RHLTGEFEKK-------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT--------  307 (385)
Q Consensus       243 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~--------  307 (385)
                      |+....|...       +.+|+|......    ..+.+.+.||||+||++++.+|..||++++|+|+|||++        
T Consensus       128 Ri~~~~Y~PT~~Dil~~~~~TiGi~~~~~----~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e  203 (340)
T 4fid_A          128 RIAMEDYVPTEEDLIHNRTKTTGIHEYDF----VVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYE  203 (340)
T ss_dssp             HHSSTTCCCCHHHHHHSCCCCCSCEEEEE----ESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC-
T ss_pred             HHhcccCCccccceeecccceeeeEEEEE----EeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCcccccccc
Confidence            4444555444       566777544333    234678999999999999999999999999999999999        


Q ss_pred             --Chhhhhh
Q psy125          308 --SRITYKN  314 (385)
Q Consensus       308 --~~~s~~~  314 (385)
                        +..+|++
T Consensus       204 ~~~~nr~~e  212 (340)
T 4fid_A          204 DGNTSRLTE  212 (340)
T ss_dssp             -CCSBHHHH
T ss_pred             ccccchHHH
Confidence              6777766

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.11  E-value=5.7e-11  Score=109.39  Aligned_cols=103  Identities=7%  Similarity=0.030  Sum_probs=76.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      +++++|..++|||||+++++      ....|+...+    ..+......+.||||||+++|......+++.+|++|+|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~----~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM----YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS------EEEEESSSEE----EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE----EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            89999999999999999976      2222332222    2334445568999999999997777778899999999999


Q ss_pred             CCChhhhhh--------------------------------------------------hhe--ecccc---CCCchHHH
Q psy125          306 VTSRITYKN--------------------------------------------------YYD--ISAKS---NYNFEKPF  330 (385)
Q Consensus       306 ~~~~~s~~~--------------------------------------------------~~e--~Sak~---~~~v~~~f  330 (385)
                       ++...-+.                                                  |++  +||++   |.||+++|
T Consensus        93 -~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~  171 (370)
T 2elf_A           93 -PQGLDAHTGECIIALDLLGFKHGIIALTRSDSTHMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELK  171 (370)
T ss_dssp             -TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGSCHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHH
T ss_pred             -CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCCCHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHH
Confidence             53211000                                                  466  99999   99999999


Q ss_pred             HHHHHHHhc
Q psy125          331 LWLARKLIG  339 (385)
Q Consensus       331 ~~l~~~i~~  339 (385)
                      ..|.+.+..
T Consensus       172 ~~l~~~~~~  180 (370)
T 2elf_A          172 ARINEVAEK  180 (370)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHhhccc
Confidence            999887653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.11  E-value=3e-10  Score=103.08  Aligned_cols=108  Identities=13%  Similarity=0.116  Sum_probs=74.6

Q ss_pred             hhccCcEEEEEEeCCChhhh-hcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---hHHHHHHHHhcCCeEEEEcCCCC
Q psy125           78 YYIQGQCAIIMFDVTSRITY-KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKNLQYYDISAKSN  153 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~~~-~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~~~~~~~~~Sa~~~  153 (385)
                      .+.++|.+++|... .+... ..+..++.....  .+++.++|+||+|+.+...   ...+...+...+++++.+|+.++
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            46789999988665 45322 223333322221  4788899999999976543   33445556667889999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCC
Q psy125          154 YNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDG  233 (385)
Q Consensus       154 ~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~  233 (385)
                      .|++++...+    .+                                                       -.++++|++
T Consensus       204 ~gl~~L~~~~----~G-------------------------------------------------------~~~~lvG~s  224 (358)
T 2rcn_A          204 DGLKPLEEAL----TG-------------------------------------------------------RISIFAGQS  224 (358)
T ss_dssp             BTHHHHHHHH----TT-------------------------------------------------------SEEEEECCT
T ss_pred             cCHHHHHHhc----CC-------------------------------------------------------CEEEEECCC
Confidence            9987655421    00                                                       258999999


Q ss_pred             CCCHHHHHHHHhcC
Q psy125          234 GTGKTTFVKRHLTG  247 (385)
Q Consensus       234 ~vgks~~~~~~~~~  247 (385)
                      |||||||++.+.+.
T Consensus       225 G~GKSTLln~L~g~  238 (358)
T 2rcn_A          225 GVGKSSLLNALLGL  238 (358)
T ss_dssp             TSSHHHHHHHHHCC
T ss_pred             CccHHHHHHHHhcc
Confidence            99999999997743

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=99.09  E-value=1.1e-10  Score=100.89  Aligned_cols=52  Identities=23%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE  205 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~  205 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...
T Consensus       123 ~~~~LSgGqkqRv~lAral~~~p~lll-----LDEPts~LD~~~~~~~~~~l~~l~~  174 (240)
T 2onk_A          123 KPARLSGGERQRVALARALVIQPRLLL-----LDEPLSAVDLKTKGVLMEELRFVQR  174 (240)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSSBE-----EESTTSSCCHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHH
Confidence            345688999999999999999999999     9999999999999999999988754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.09  E-value=5.5e-11  Score=113.14  Aligned_cols=88  Identities=17%  Similarity=0.165  Sum_probs=50.4

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc--Cccccc----------------------cc-----cceeeEEEEEEEEeCCee
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLT--GEFEKK----------------------YV-----ATLGVEVHPLVFHTNRGA  272 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~--~~~~~~----------------------~~-----~~~~~~~~~~~~~~~~~~  272 (385)
                      ...++|+++|..++|||||+++++.  +.+...                      .+     ...|.|.......+....
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            4568999999999999999999863  222110                      00     011222222211222235


Q ss_pred             EEEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125          273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       273 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~  309 (385)
                      ..+.||||||+++|......+++.+|++|||+|+++.
T Consensus       121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g  157 (467)
T 1r5b_A          121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG  157 (467)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred             eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence            6789999999999998888899999999999999997

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.09  E-value=1.1e-10  Score=102.15  Aligned_cols=54  Identities=15%  Similarity=0.163  Sum_probs=48.7

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ..+.+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       149 ~~~~~LSgGqkQrv~iAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~l~~~  202 (257)
T 1g6h_A          149 RKAGELSGGQMKLVEIGRALMTNPKMIV-----MDEPIAGVAPGLAHDIFNHVLELKAK  202 (257)
T ss_dssp             SBGGGSCHHHHHHHHHHHHHHTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CCchhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCccCCCHHHHHHHHHHHHHHHHC
Confidence            3456788999999999999999999999     99999999999999999999887543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.08  E-value=2.5e-10  Score=99.85  Aligned_cols=53  Identities=17%  Similarity=0.222  Sum_probs=48.1

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       156 ~~~~LSgGqkQRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~~~~~l~~l~~~  208 (263)
T 2olj_A          156 YPDSLSGGQAQRVAIARALAMEPKIML-----FDEPTSALDPEMVGEVLSVMKQLANE  208 (263)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred             ChhhCCHHHHHHHHHHHHHHCCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHhC
Confidence            355688999999999999999999999     99999999999999999999887543

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.08  E-value=6e-11  Score=107.76  Aligned_cols=53  Identities=26%  Similarity=0.261  Sum_probs=47.4

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       135 ~~~~LSGGq~QRValArAL~~~P~lLL-----LDEPts~LD~~~r~~l~~~l~~~~~~  187 (359)
T 3fvq_A          135 YPHELSGGQQQRAALARALAPDPELIL-----LDEPFSALDEQLRRQIREDMIAALRA  187 (359)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            456678999999999999999999999     99999999999999999877776543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.07  E-value=1.9e-10  Score=97.30  Aligned_cols=53  Identities=15%  Similarity=0.099  Sum_probs=48.1

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE  205 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~  205 (385)
                      ....+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...
T Consensus       129 ~~~~~LSgGqkqrv~laraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~~~~  181 (214)
T 1sgw_A          129 KKLGELSQGTIRRVQLASTLLVNAEIYV-----LDDPVVAIDEDSKHKVLKSILEILK  181 (214)
T ss_dssp             SBGGGSCHHHHHHHHHHHHTTSCCSEEE-----EESTTTTSCTTTHHHHHHHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCEEE-----EECCCcCCCHHHHHHHHHHHHHHHh
Confidence            3456788999999999999999999999     9999999999999999999988653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.07  E-value=7.7e-11  Score=107.45  Aligned_cols=44  Identities=9%  Similarity=0.092  Sum_probs=38.3

Q ss_pred             eeEEEEEeeCCCccccCcccccccccCcEEEEEEeCC----------Chhhhhh
Q psy125          271 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVT----------SRITYKN  314 (385)
Q Consensus       271 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~----------~~~s~~~  314 (385)
                      ..+.+.||||+||++|+.++..||++++++|+|||++          +..+|++
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~  234 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMME  234 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHH
Confidence            5788999999999999999999999999999999998          6677765

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.07  E-value=1.7e-10  Score=105.65  Aligned_cols=51  Identities=14%  Similarity=0.152  Sum_probs=35.3

Q ss_pred             ccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCCC
Q psy125          254 VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS  308 (385)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~  308 (385)
                      .+|+|....  .+.++  .+.+.||||+||+.++..|..||++++++|||||+++
T Consensus       186 ~~T~Gi~~~--~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~  236 (362)
T 1zcb_A          186 RPTKGIHEY--DFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSE  236 (362)
T ss_dssp             CCCSSEEEE--EEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTC
T ss_pred             CCccceEEE--EeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECcc
Confidence            356665543  33333  5789999999999999999999999999999999999

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.07  E-value=1.3e-10  Score=105.81  Aligned_cols=53  Identities=17%  Similarity=0.242  Sum_probs=48.2

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       130 ~~~~LSgGq~QRvalArAL~~~P~lLL-----LDEP~s~LD~~~r~~l~~~l~~l~~~  182 (359)
T 2yyz_A          130 KPTQLSGGQQQRVALARALVKQPKVLL-----FDEPLSNLDANLRMIMRAEIKHLQQE  182 (359)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EECCcccCCHHHHHHHHHHHHHHHHh
Confidence            345688999999999999999999999     99999999999999999999887543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.07  E-value=9.6e-11  Score=107.45  Aligned_cols=53  Identities=17%  Similarity=0.299  Sum_probs=48.1

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       136 ~~~~LSGGq~QRvalArAL~~~P~lLL-----LDEP~s~LD~~~r~~l~~~l~~l~~~  188 (372)
T 1g29_1          136 KPRELSGGQRQRVALGRAIVRKPQVFL-----MDEPLSNLDAKLRVRMRAELKKLQRQ  188 (372)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTCCSEEE-----EECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEE-----ECCCCccCCHHHHHHHHHHHHHHHHh
Confidence            345678999999999999999999999     99999999999999999999887543

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.06  E-value=6.5e-10  Score=101.07  Aligned_cols=103  Identities=9%  Similarity=0.056  Sum_probs=61.7

Q ss_pred             eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcc-hhh-hHH
Q psy125           56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD-RKV-KAK  133 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~-~~~-~~~  133 (385)
                      .+..+.++||+|....   .......+|.+++|+|.......+.+...   +.    ..+.++++||+|+.. ... ...
T Consensus       146 ~~~~~iliDT~Gi~~~---~~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~----~~~~ivvlNK~Dl~~~~~~s~~~  215 (337)
T 2qm8_A          146 AGFDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKG---IF----ELADMIAVNKADDGDGERRASAA  215 (337)
T ss_dssp             TTCCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTT---HH----HHCSEEEEECCSTTCCHHHHHHH
T ss_pred             CCCCEEEEECCCCCcc---hhhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh----ccccEEEEEchhccCchhHHHHH
Confidence            3567899999997532   12345789999999997643221111011   11    224567779999643 211 111


Q ss_pred             HHHHHH----hc------CCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          134 SIVFHR----KK------NLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       134 ~~~~~~----~~------~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      ...+..    ..      ..+++.+|+.++.|+++++..|.+...
T Consensus       216 ~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          216 ASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            111211    11      357889999999999999999988653

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.05  E-value=1.7e-10  Score=105.61  Aligned_cols=53  Identities=13%  Similarity=0.249  Sum_probs=48.4

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       138 ~~~~LSGGq~QRvalArAL~~~P~lLL-----LDEP~s~LD~~~r~~l~~~l~~l~~~  190 (372)
T 1v43_A          138 YPAQLSGGQRQRVAVARAIVVEPDVLL-----MDEPLSNLDAKLRVAMRAEIKKLQQK  190 (372)
T ss_dssp             CTTTCCSSCHHHHHHHHHHTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEE-----EcCCCccCCHHHHHHHHHHHHHHHHh
Confidence            456788999999999999999999999     99999999999999999999887543

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.02  E-value=3.2e-10  Score=98.70  Aligned_cols=50  Identities=12%  Similarity=0.051  Sum_probs=42.4

Q ss_pred             CCC-CCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          150 AKS-NYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       150 a~~-~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      ..+ .+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++..
T Consensus       140 ~~~~LSgGqkQrv~iAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~l~  190 (250)
T 2d2e_A          140 LNEGFSGGEKKRNEILQLLVLEPTYAV-----LDETDSGLDIDALKVVARGVNAMR  190 (250)
T ss_dssp             TTCC----HHHHHHHHHHHHHCCSEEE-----EECGGGTTCHHHHHHHHHHHHHHC
T ss_pred             cccCCCHHHHHHHHHHHHHHcCCCEEE-----EeCCCcCCCHHHHHHHHHHHHHHH
Confidence            445 77999999999999999999999     999999999999999999988763

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=99.01  E-value=2e-10  Score=104.31  Aligned_cols=53  Identities=23%  Similarity=0.266  Sum_probs=48.3

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       124 ~~~~LSgGq~QRvalAraL~~~P~lLL-----LDEP~s~LD~~~~~~l~~~l~~l~~~  176 (348)
T 3d31_A          124 NPLTLSGGEQQRVALARALVTNPKILL-----LDEPLSALDPRTQENAREMLSVLHKK  176 (348)
T ss_dssp             CGGGSCHHHHHHHHHHHHTTSCCSEEE-----EESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EECccccCCHHHHHHHHHHHHHHHHh
Confidence            345678999999999999999999999     99999999999999999999887554

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.01  E-value=3.4e-10  Score=97.90  Aligned_cols=51  Identities=18%  Similarity=0.289  Sum_probs=47.3

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE  205 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~  205 (385)
                      ..+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...
T Consensus       137 ~~~LSgGq~qrv~lAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~~~~  187 (240)
T 1ji0_A          137 GGTLSGGEQQMLAIGRALMSRPKLLM-----MDEPSLGLAPILVSEVFEVIQKINQ  187 (240)
T ss_dssp             SSSSCHHHHHHHHHHHHHTTCCSEEE-----EECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHHHHHHcCCCEEE-----EcCCcccCCHHHHHHHHHHHHHHHH
Confidence            56678999999999999999999999     9999999999999999999988754

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.01  E-value=1.9e-10  Score=104.74  Aligned_cols=53  Identities=25%  Similarity=0.280  Sum_probs=48.2

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       137 ~~~~LSGGq~QRvalAraL~~~P~lLL-----LDEP~s~LD~~~r~~l~~~l~~l~~~  189 (353)
T 1oxx_K          137 FPRELSGAQQQRVALARALVKDPSLLL-----LDEPFSNLDARMRDSARALVKEVQSR  189 (353)
T ss_dssp             CGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCGGGHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHHhCCCEEE-----EECCcccCCHHHHHHHHHHHHHHHHh
Confidence            345788999999999999999999999     99999999999999999999887543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.00  E-value=3.9e-10  Score=103.98  Aligned_cols=56  Identities=16%  Similarity=0.218  Sum_probs=46.4

Q ss_pred             cceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCCC----------hhhhhh
Q psy125          255 ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTS----------RITYKN  314 (385)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~----------~~s~~~  314 (385)
                      +|+|.+..  .+.++  .+.+.||||+||++|+.+|..||++++++|||||+++          +.+|++
T Consensus       203 ~TiGi~~~--~~~~~--~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e  268 (402)
T 1azs_C          203 LTSGIFET--KFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQE  268 (402)
T ss_dssp             CCCSEEEE--EEEET--TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHH
T ss_pred             ceeeeEEE--EeecC--CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHH
Confidence            45565542  33444  4789999999999999999999999999999999999          777776

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.00  E-value=4.4e-11  Score=107.28  Aligned_cols=92  Identities=15%  Similarity=0.067  Sum_probs=76.2

Q ss_pred             HHHHHHhcCccc-cccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChh-hhhh--
Q psy125          239 TFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKN--  314 (385)
Q Consensus       239 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~--  314 (385)
                      +++.+|+.+.|. ..+.+|+|..+. ..+..++   .+.||||  +++|+.+++.|++++|++|+|||++++. +|+.  
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            577888888998 889999995544 3332222   5789999  9999999999999999999999999987 5653  


Q ss_pred             -------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          315 -------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       315 -------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                                                                 |++|||++|.||+++|..+..+
T Consensus       106 ~~l~~~~~~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge  170 (301)
T 1u0l_A          106 KFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK  170 (301)
T ss_dssp             HHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred             HHHHHHHHCCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence                                                       5689999999999999987654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.00  E-value=3.7e-10  Score=98.92  Aligned_cols=54  Identities=15%  Similarity=0.198  Sum_probs=48.7

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ....+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       149 ~~~~~LSgGq~qRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~~~~~l~~l~~~  202 (262)
T 1b0u_A          149 KYPVHLSGGQQQRVSIARALAMEPDVLL-----FDEPTSALDPELVGEVLRIMQQLAEE  202 (262)
T ss_dssp             SCGGGSCHHHHHHHHHHHHHHTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEE-----EeCCCccCCHHHHHHHHHHHHHHHhC
Confidence            3456788999999999999999999999     99999999999999999999887543

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.99  E-value=3.2e-10  Score=104.17  Aligned_cols=88  Identities=17%  Similarity=0.005  Sum_probs=48.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC--Ce---------------eEEEEEEeCCCccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN--RG---------------AIRFNVWDTAGQEK   70 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~--~~---------------~~~~~i~Dt~g~~~   70 (385)
                      +.++|+|+|.+|||||||+|+|.+...  ...+.+++|.......+.  ..               ...+.+|||||+..
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            457999999999999999999776543  333444444443332221  11               23589999999875


Q ss_pred             ccc-------chhhhhccCcEEEEEEeCCChhhh
Q psy125           71 FGG-------LRDGYYIQGQCAIIMFDVTSRITY   97 (385)
Q Consensus        71 ~~~-------~~~~~~~~~d~illV~d~~~~~~~   97 (385)
                      ...       ....+++++|++++|+|+.+...+
T Consensus        99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             --------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            443       345667899999999999865443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.98  E-value=5.6e-10  Score=103.87  Aligned_cols=117  Identities=15%  Similarity=0.213  Sum_probs=54.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccc-c-------ccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC-------
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-Y-------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-------  287 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------  287 (385)
                      -.++|+++|++|+|||||++.+++..+... +       .++.+.......+...+....+++|||+|+..+.       
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            458999999999999999999886655211 1       1222222212222223344578999999986542       


Q ss_pred             c------------------ccccccccCcEEEEEEeCCCh-hhhhh----------------------------------
Q psy125          288 G------------------LRDGYYIQGQCAIIMFDVTSR-ITYKN----------------------------------  314 (385)
Q Consensus       288 ~------------------~~~~~~~~~~~~ilv~d~~~~-~s~~~----------------------------------  314 (385)
                      .                  +...+++++++.+++|+++.- .+|..                                  
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~~v~iIlVinK~Dll~~~ev~~~k  189 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHEKVNIIPLIAKADTLTPEECQQFK  189 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTTTSEEEEEEESTTSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhccCcEEEEEEcccCccHHHHHHHH
Confidence            1                  223466788877777777653 33332                                  


Q ss_pred             -------------hheeccccCCCchHHHHHHHHHHhc
Q psy125          315 -------------YYDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       315 -------------~~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                                   |+++||+++.|++++|..+...++-
T Consensus       190 ~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPf  227 (418)
T 2qag_C          190 KQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL  227 (418)
T ss_dssp             HHHHHHHHHHTCCCCCCC-----------------CCE
T ss_pred             HHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence                         7999999999999999988886543

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.98  E-value=2e-10  Score=110.58  Aligned_cols=88  Identities=17%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcC--ccc------------cc------cccceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTG--EFE------------KK------YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ  283 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~--~~~------------~~------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~  283 (385)
                      ..+++++|.+++|||||+++++..  .+.            ..      ..++.|.+.......+....+.+.||||||+
T Consensus        13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~   92 (529)
T 2h5e_A           13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGH   92 (529)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCS
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCC
Confidence            579999999999999999998852  110            00      0112333333333334445678999999999


Q ss_pred             cccCcccccccccCcEEEEEEeCCChhh
Q psy125          284 EKFGGLRDGYYIQGQCAIIMFDVTSRIT  311 (385)
Q Consensus       284 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s  311 (385)
                      ..|......+++.+|++|+|+|++++..
T Consensus        93 ~df~~~~~~~l~~aD~~IlVvDa~~g~~  120 (529)
T 2h5e_A           93 EDFSEDTYRTLTAVDCCLMVIDAAKGVE  120 (529)
T ss_dssp             TTCCHHHHHGGGGCSEEEEEEETTTCSC
T ss_pred             hhHHHHHHHHHHHCCEEEEEEeCCccch
Confidence            9999888889999999999999998644

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.98  E-value=1.2e-09  Score=95.02  Aligned_cols=53  Identities=17%  Similarity=0.166  Sum_probs=48.3

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       125 ~~~~LSgGq~qrv~lAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~l~~~  177 (253)
T 2nq2_C          125 EFTSLSGGQRQLILIARAIASECKLIL-----LDEPTSALDLANQDIVLSLLIDLAQS  177 (253)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHTTCSEEE-----ESSSSTTSCHHHHHHHHHHHHHHHHT
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHHh
Confidence            356788999999999999999999999     99999999999999999999887543

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.97  E-value=3e-10  Score=99.33  Aligned_cols=50  Identities=16%  Similarity=0.074  Sum_probs=46.2

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++.
T Consensus       125 ~~~~LSgGqkqRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~L~~~  174 (263)
T 2pjz_A          125 KLYKLSAGQSVLVRTSLALASQPEIVG-----LDEPFENVDAARRHVISRYIKEY  174 (263)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHTCCSEEE-----EECTTTTCCHHHHHHHHHHHHHS
T ss_pred             ChhhCCHHHHHHHHHHHHHHhCCCEEE-----EECCccccCHHHHHHHHHHHHHh
Confidence            356788999999999999999999999     99999999999999999988765

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.97  E-value=5.1e-11  Score=106.31  Aligned_cols=51  Identities=18%  Similarity=0.181  Sum_probs=46.3

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      .....+|+++++..|++++..+|++++     +|||++++|+.....+.+.+++..
T Consensus       187 ~g~~LSGGqrQRvaiARAL~~~p~iLl-----LDEPts~LD~~~~~~i~~~l~~l~  237 (306)
T 3nh6_A          187 RGLKLSGGEKQRVAIARTILKAPGIIL-----LDEATSALDTSNERAIQASLAKVC  237 (306)
T ss_dssp             TSBCCCHHHHHHHHHHHHHHHCCSEEE-----EECCSSCCCHHHHHHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHHHHHhCCCEEE-----EECCcccCCHHHHHHHHHHHHHHc
Confidence            345678999999999999999999999     999999999999999999888753

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.96  E-value=3.1e-10  Score=99.74  Aligned_cols=54  Identities=15%  Similarity=0.097  Sum_probs=48.6

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ....+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       134 ~~~~~LSgGq~qRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~l~~~l~~l~~~  187 (266)
T 2yz2_A          134 RVPFFLSGGEKRRVAIASVIVHEPDILI-----LDEPLVGLDREGKTDLLRIVEKWKTL  187 (266)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             CChhhCCHHHHHHHHHHHHHHcCCCEEE-----EcCccccCCHHHHHHHHHHHHHHHHc
Confidence            3456788999999999999999999999     99999999999999999999887543

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.96  E-value=2.8e-11  Score=106.90  Aligned_cols=54  Identities=20%  Similarity=0.180  Sum_probs=48.8

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ....+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       157 ~~~~~LSgGqkqRv~lAraL~~~p~lLl-----LDEPts~LD~~~~~~l~~~l~~l~~~  210 (279)
T 2ihy_A          157 QYIGYLSTGEKQRVMIARALMGQPQVLI-----LDEPAAGLDFIARESLLSILDSLSDS  210 (279)
T ss_dssp             SBGGGSCHHHHHHHHHHHHHHTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHHHHHhCCCCEEE-----EeCCccccCHHHHHHHHHHHHHHHHC
Confidence            3456788999999999999999999999     99999999999999999999887554

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.94  E-value=4.3e-10  Score=97.58  Aligned_cols=52  Identities=21%  Similarity=0.110  Sum_probs=47.6

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCC-------cccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPN-------LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE  205 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~-------~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~  205 (385)
                      ...+.+|+++++..|++++..+|+       +++     +|||++++|+..+..+.+.+++...
T Consensus       123 ~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lll-----LDEPts~LD~~~~~~l~~~l~~l~~  181 (249)
T 2qi9_C          123 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL-----LDEPMNSLDVAQQSALDKILSALSQ  181 (249)
T ss_dssp             BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE-----ESSTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEE-----EECCcccCCHHHHHHHHHHHHHHHh
Confidence            356678999999999999999999       999     9999999999999999999988754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.93  E-value=8.4e-10  Score=109.36  Aligned_cols=91  Identities=21%  Similarity=0.190  Sum_probs=66.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccc-------------ccccc---ceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFE-------------KKYVA---TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF  286 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  286 (385)
                      ...+++++|.+|+|||||+++++.....             ..+.+   ..|.++......+....+.++||||||+..|
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~f   87 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF   87 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccch
Confidence            3578999999999999999998832221             00000   1133444444444445678999999999999


Q ss_pred             CcccccccccCcEEEEEEeCCChhhhh
Q psy125          287 GGLRDGYYIQGQCAIIMFDVTSRITYK  313 (385)
Q Consensus       287 ~~~~~~~~~~~~~~ilv~d~~~~~s~~  313 (385)
                      ......+++.+|++++|+|+++....+
T Consensus        88 ~~~~~~~l~~ad~~ilVvD~~~g~~~q  114 (665)
T 2dy1_A           88 VGEIRGALEAADAALVAVSAEAGVQVG  114 (665)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHH
T ss_pred             HHHHHHHHhhcCcEEEEEcCCcccchh
Confidence            888888999999999999998755443

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.92  E-value=9.5e-10  Score=96.59  Aligned_cols=47  Identities=13%  Similarity=0.022  Sum_probs=44.1

Q ss_pred             CCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          152 SNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                      +.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++.
T Consensus       164 ~LSgGq~QRv~iAraL~~~p~lLl-----LDEPts~LD~~~~~~l~~~l~~l  210 (267)
T 2zu0_C          164 GFSGGEKKRNDILQMAVLEPELCI-----LDESDSGLDIDALKVVADGVNSL  210 (267)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCSEEE-----EESTTTTCCHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHhCCCEEE-----EeCCCCCCCHHHHHHHHHHHHHH
Confidence            488999999999999999999999     99999999999999999988764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.91  E-value=3.5e-10  Score=104.23  Aligned_cols=113  Identities=13%  Similarity=0.249  Sum_probs=75.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCcccccccccee---eE-----------------------------------------
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG---VE-----------------------------------------  260 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~---~~-----------------------------------------  260 (385)
                      .+|+++|.+|+||||+++++++..|......+..   +.                                         
T Consensus        35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~  114 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE  114 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence            4899999999999999999987666322211110   00                                         


Q ss_pred             --------EEEEEEEe-CCeeEEEEEeeCCCcccc-------------CcccccccccCcEEEEEEeCCChhhhhh----
Q psy125          261 --------VHPLVFHT-NRGAIRFNVWDTAGQEKF-------------GGLRDGYYIQGQCAIIMFDVTSRITYKN----  314 (385)
Q Consensus       261 --------~~~~~~~~-~~~~~~l~i~Dt~G~~~~-------------~~~~~~~~~~~~~~ilv~d~~~~~s~~~----  314 (385)
                              .....+.+ ......+.||||||+.++             ..+...|++++|++|+|+|.++......    
T Consensus       115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~  194 (360)
T 3t34_A          115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIK  194 (360)
T ss_dssp             SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHH
T ss_pred             cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHH
Confidence                    00001111 111335789999999876             4456678999999999998865433311    


Q ss_pred             ------------------------------------------hheeccccCCCchHHHHHHHHHH
Q psy125          315 ------------------------------------------YYDISAKSNYNFEKPFLWLARKL  337 (385)
Q Consensus       315 ------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i  337 (385)
                                                                |+++|++++.++++.+..+....
T Consensus       195 l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~  259 (360)
T 3t34_A          195 ISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARK  259 (360)
T ss_dssp             HHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred             HHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence                                                      88999999999988776655443

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.90  E-value=4.5e-10  Score=103.18  Aligned_cols=28  Identities=18%  Similarity=0.341  Sum_probs=24.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFE  250 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~  250 (385)
                      ...+|+++|.+||||||+++++++..+.
T Consensus        30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           30 DLPQIAVVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence            3479999999999999999998877663

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.90  E-value=1.3e-09  Score=94.63  Aligned_cols=49  Identities=12%  Similarity=0.197  Sum_probs=46.1

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                      ..+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++.
T Consensus       143 ~~~LSgGq~qRv~iAraL~~~p~lll-----LDEPts~LD~~~~~~i~~~l~~~  191 (247)
T 2ff7_A          143 GAGLSGGQRQRIAIARALVNNPKILI-----FDEATSALDYESEHVIMRNMHKI  191 (247)
T ss_dssp             TTCCCHHHHHHHHHHHHHTTCCSEEE-----ECCCCSCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHH
Confidence            45678999999999999999999999     99999999999999999999876

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.88  E-value=1.3e-09  Score=94.40  Aligned_cols=50  Identities=16%  Similarity=0.232  Sum_probs=46.4

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      ..+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++..
T Consensus       137 ~~~LSgGq~qrv~lAral~~~p~lll-----LDEPts~LD~~~~~~i~~~l~~~~  186 (243)
T 1mv5_A          137 GVKISGGQRQRLAIARAFLRNPKILM-----LDEATASLDSESESMVQKALDSLM  186 (243)
T ss_dssp             SBCCCHHHHHHHHHHHHHHHCCSEEE-----EECCSCSSCSSSCCHHHHHHHHHH
T ss_pred             cCcCCHHHHHHHHHHHHHhcCCCEEE-----EECCcccCCHHHHHHHHHHHHHhc
Confidence            45678999999999999999999999     999999999999999999998764

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=98.88  E-value=2.1e-09  Score=98.68  Aligned_cols=90  Identities=16%  Similarity=-0.010  Sum_probs=48.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEE--EEEEEEeCCe---------------eEEEEEeeCCCccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV--HPLVFHTNRG---------------AIRFNVWDTAGQEK  285 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------~~~l~i~Dt~G~~~  285 (385)
                      ..++++++|.+|||||||++++....+.  ....+++|.  ....+.+.+.               ...+.+|||||+.+
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~--~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQAS--AENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcc--ccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            4578999999999999999998866542  222222222  1222233321               23489999999987


Q ss_pred             cCc-------ccccccccCcEEEEEEeCCChhhhhh
Q psy125          286 FGG-------LRDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       286 ~~~-------~~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      +.+       ....+++++|++++|+|+++..++..
T Consensus        99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~  134 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITH  134 (396)
T ss_dssp             --------CCHHHHHHHTSSSEEEEEEC--------
T ss_pred             ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhh
Confidence            554       23357899999999999998777643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.87  E-value=4e-10  Score=96.76  Aligned_cols=39  Identities=21%  Similarity=0.300  Sum_probs=30.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV  261 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~  261 (385)
                      ...+++++|.+||||||++++++...+...+.++++.++
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~   75 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDV   75 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEET
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCC
Confidence            357999999999999999999987766555556665554

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.86  E-value=7.4e-10  Score=97.45  Aligned_cols=52  Identities=25%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      ....+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++..
T Consensus       152 ~~~~~LSgGq~QRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~i~~~l~~~~  203 (271)
T 2ixe_A          152 ETGNQLSGGQRQAVALARALIRKPRLLI-----LDNATSALDAGNQLRVQRLLYESP  203 (271)
T ss_dssp             GGGTTSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHCT
T ss_pred             CCcCCCCHHHHHHHHHHHHHhcCCCEEE-----EECCccCCCHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999     999999999999999999888753

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.86  E-value=6.3e-09  Score=96.74  Aligned_cols=114  Identities=18%  Similarity=0.168  Sum_probs=77.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccc-cccc-cceeeEEEEEEEEeCCeeEEEEEeeCCCccc----cCcccccc---cc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFE-KKYV-ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK----FGGLRDGY---YI  295 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~----~~~~~~~~---~~  295 (385)
                      -.++++|.+|+|||||++.+...... ..+. .|...+  .-.+..++ ...+.+|||||+..    +..+...+   ..
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~--~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~e  234 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPN--LGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIA  234 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCE--EEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecce--eeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHH
Confidence            35899999999999999997754221 1111 111111  11233332 34578999999743    22333333   34


Q ss_pred             cCcEEEEEEeCCChhhhhh------------------------------------------------hheeccccCCCch
Q psy125          296 QGQCAIIMFDVTSRITYKN------------------------------------------------YYDISAKSNYNFE  327 (385)
Q Consensus       296 ~~~~~ilv~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~  327 (385)
                      .++.++.|+|++ +.++.+                                                ++++||+++.||+
T Consensus       235 ra~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~  313 (416)
T 1udx_A          235 RTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLP  313 (416)
T ss_dssp             SSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred             HHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence            799999999998 444433                                                6889999999999


Q ss_pred             HHHHHHHHHHhcCCC
Q psy125          328 KPFLWLARKLIGDPN  342 (385)
Q Consensus       328 ~~f~~l~~~i~~~~~  342 (385)
                      ++|.+|++.+...+.
T Consensus       314 eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          314 ALKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999999977554

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.85  E-value=4.5e-09  Score=95.00  Aligned_cols=27  Identities=22%  Similarity=0.418  Sum_probs=23.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCcc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEF  249 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~  249 (385)
                      ...+|+++|.+|+||||+++++++..+
T Consensus        23 ~~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           23 DLPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            457899999999999999999987765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.84  E-value=3e-09  Score=90.85  Aligned_cols=113  Identities=14%  Similarity=0.149  Sum_probs=70.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEE------------EEEEEEeCC------------------eeE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV------------HPLVFHTNR------------------GAI  273 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~------------------~~~  273 (385)
                      ..+++++|.+||||||++++++...+......++..+.            ....+.++.                  ...
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSDC  109 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCCC
Confidence            46899999999999999999875422111111111110            001111221                  234


Q ss_pred             EEEEeeCCCccccCccccc-ccccCcEEEEEEeCCChhhhhh--------------------------------------
Q psy125          274 RFNVWDTAGQEKFGGLRDG-YYIQGQCAIIMFDVTSRITYKN--------------------------------------  314 (385)
Q Consensus       274 ~l~i~Dt~G~~~~~~~~~~-~~~~~~~~ilv~d~~~~~s~~~--------------------------------------  314 (385)
                      .+.+|||+|+-    ..+. +...++++++|+|+++......                                      
T Consensus       110 d~iiidt~G~~----~~~~~~~~~~~~~i~vvd~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~  185 (221)
T 2wsm_A          110 DLLLIENVGNL----ICPVDFDLGENYRVVMVSVTEGDDVVEKHPEIFRVADLIVINKVALAEAVGADVEKMKADAKLIN  185 (221)
T ss_dssp             SEEEEEEEEBS----SGGGGCCCSCSEEEEEEEGGGCTTHHHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCC----CCCchhccccCcEEEEEeCCCcchhhhhhhhhhhcCCEEEEecccCCcchhhHHHHHHHHHHHhC
Confidence            67899999961    1122 2246788999999876432110                                      


Q ss_pred             ----hheeccccCCCchHHHHHHHHHHhcC
Q psy125          315 ----YYDISAKSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       315 ----~~e~Sak~~~~v~~~f~~l~~~i~~~  340 (385)
                          ++++||++|.|++++|.+|.+.+...
T Consensus       186 ~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          186 PRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             TTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             CCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence                67899999999999999999987553

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.84  E-value=3.7e-09  Score=105.25  Aligned_cols=41  Identities=15%  Similarity=0.241  Sum_probs=31.8

Q ss_pred             EEEEeeCCCccc---cCcccccccccCcEEEEEEeCCChhhhhh
Q psy125          274 RFNVWDTAGQEK---FGGLRDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       274 ~l~i~Dt~G~~~---~~~~~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      .+.||||||...   .......|++.+|++|+|+|++++.++.+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e  218 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGE  218 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHH
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhH
Confidence            478999999765   33445568899999999999987765544

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.82  E-value=4.1e-09  Score=107.06  Aligned_cols=92  Identities=14%  Similarity=0.181  Sum_probs=67.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCc------------ccc------ccccceeeEEEEEEEE------------eCCee
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGE------------FEK------KYVATLGVEVHPLVFH------------TNRGA  272 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~------------~~~------~~~~~~~~~~~~~~~~------------~~~~~  272 (385)
                      ...+|+++|..++|||||+++++...            +..      ....|+........+.            .++..
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            35799999999999999999988531            100      0011222222222222            23457


Q ss_pred             EEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh
Q psy125          273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       273 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      +.++||||||+.+|...+..+++.+|++|+|||++++.+++.
T Consensus        98 ~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt  139 (842)
T 1n0u_A           98 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQT  139 (842)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHH
T ss_pred             ceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHH
Confidence            889999999999999999999999999999999999988877

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.79  E-value=6.5e-09  Score=96.44  Aligned_cols=83  Identities=19%  Similarity=0.153  Sum_probs=46.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEE----EEEEE-------------------EeCC-eeEEEEEeeC
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----HPLVF-------------------HTNR-GAIRFNVWDT  280 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------------------~~~~-~~~~l~i~Dt  280 (385)
                      ++|+++|.+|||||||+|+++....  .....+++|.    ....+                   .+++ ..+.+.+|||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~~--~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVDV--EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            4899999999999999999886552  1222222222    11111                   1122 2467999999


Q ss_pred             CCccc----cCcccc---cccccCcEEEEEEeCCCh
Q psy125          281 AGQEK----FGGLRD---GYYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       281 ~G~~~----~~~~~~---~~~~~~~~~ilv~d~~~~  309 (385)
                      ||+..    +..+..   .+++++|++++|+|+++.
T Consensus        79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            99864    233333   357999999999999986

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.79  E-value=4.1e-09  Score=90.83  Aligned_cols=48  Identities=15%  Similarity=0.137  Sum_probs=43.5

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLK  201 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~  201 (385)
                      .....+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+.
T Consensus       124 ~~~~LSgGqkqRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~i~~~l~  171 (237)
T 2cbz_A          124 KGVNLSGGQKQRVSLARAVYSNADIYL-----FDDPLSAVDAHVGKHIFENVI  171 (237)
T ss_dssp             TSBCCCHHHHHHHHHHHHHHHCCSEEE-----EESTTTTSCHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhcCCCEEE-----EeCcccccCHHHHHHHHHHHH
Confidence            355678999999999999999999999     999999999999998888764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.77  E-value=5.1e-09  Score=95.21  Aligned_cols=82  Identities=20%  Similarity=0.214  Sum_probs=55.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCcccc-cc-ccceeeEEEEEEEEeCCe---------------eEEEEEeeCCCccccC
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEK-KY-VATLGVEVHPLVFHTNRG---------------AIRFNVWDTAGQEKFG  287 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~  287 (385)
                      ++++++|.+|||||||++++....+.. .+ ..|++.+...  +.+.+.               ...+.+|||||+.++.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~--v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV--VPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE--EECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEE--EecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            689999999999999999988765321 11 1122222221  233332               1468999999998763


Q ss_pred             ----ccccc---ccccCcEEEEEEeCCC
Q psy125          288 ----GLRDG---YYIQGQCAIIMFDVTS  308 (385)
Q Consensus       288 ----~~~~~---~~~~~~~~ilv~d~~~  308 (385)
                          .+...   +++.+|++++|+|+++
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                34333   4799999999999997

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.76  E-value=3.4e-09  Score=103.76  Aligned_cols=49  Identities=20%  Similarity=0.206  Sum_probs=45.2

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                      ..+.+|+++++..|++++..+|++++     +|||++++|+.....+.+.+++.
T Consensus       478 ~~~LSgGq~qr~~iAral~~~p~ill-----lDEpts~LD~~~~~~i~~~l~~~  526 (582)
T 3b5x_A          478 GTSLSGGQRQRVAIARALLRDAPVLI-----LDEATSALDTESERAIQAALDEL  526 (582)
T ss_pred             CCcCCHHHHHHHHHHHHHHcCCCEEE-----EECccccCCHHHHHHHHHHHHHH
Confidence            45677999999999999999999999     99999999999999999988765

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.74  E-value=6.8e-10  Score=97.11  Aligned_cols=49  Identities=14%  Similarity=0.203  Sum_probs=45.6

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                      ..+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++.
T Consensus       153 ~~~LSgGqkqRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~i~~~l~~l  201 (260)
T 2ghi_A          153 GMKLSGGERQRIAIARCLLKDPKIVI-----FDEATSSLDSKTEYLFQKAVEDL  201 (260)
T ss_dssp             SBCCCHHHHHHHHHHHHHHHCCSEEE-----EECCCCTTCHHHHHHHHHHHHHH
T ss_pred             cCcCCHHHHHHHHHHHHHHcCCCEEE-----EECccccCCHHHHHHHHHHHHHh
Confidence            45678999999999999999999999     99999999999999999988875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.73  E-value=6.9e-10  Score=102.22  Aligned_cols=47  Identities=26%  Similarity=0.339  Sum_probs=43.5

Q ss_pred             CCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          152 SNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                      ..+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++.
T Consensus       155 ~LSGGqrQRvalARAL~~~P~lLL-----LDEPts~LD~~~~~~l~~~l~~~  201 (390)
T 3gd7_A          155 VLSHGHKQLMCLARSVLSKAKILL-----LDEPSAHLDPVTYQIIRRTLKQA  201 (390)
T ss_dssp             TSCHHHHHHHHHHHHHHTTCCEEE-----EESHHHHSCHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEE-----EeCCccCCCHHHHHHHHHHHHHH
Confidence            378999999999999999999999     99999999999999999888753

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.71  E-value=2e-08  Score=92.40  Aligned_cols=125  Identities=10%  Similarity=0.050  Sum_probs=73.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCC-----CCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccch--------
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGE-----FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR--------   75 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~-----~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~--------   75 (385)
                      ..+|+++|.+|+|||||+|+|++..     ......+.+|+|+....+....+   +.++||||........        
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            3589999999999999999987752     23345677888888877766554   7899999975432111        


Q ss_pred             hhh--hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHH
Q psy125           76 DGY--YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR  139 (385)
Q Consensus        76 ~~~--~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~  139 (385)
                      ..+  ....+..+++++.........+.. +..+  ...+.|+++++||.|...........+++.
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l--~~~~~~~~~v~nk~d~~~~~~~~~~~~~~~  299 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYV--SGGRRAFTCHFSNRLTIHRTKLEKADELYK  299 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEE--ESSSEEEEEEECTTSCEEEEEHHHHHHHHH
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEE-EEEe--cCCCceEEEEecCccccccccHHHHHHHHH
Confidence            111  245666777776632211111000 0011  113678999999999876544444443333

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.70  E-value=2.3e-08  Score=91.79  Aligned_cols=65  Identities=8%  Similarity=-0.026  Sum_probs=49.8

Q ss_pred             eEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh-------------------------------------
Q psy125          272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN-------------------------------------  314 (385)
Q Consensus       272 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~-------------------------------------  314 (385)
                      ++.+.||||||...   .....+..+|++|+|+|.+....++.                                     
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~  247 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIVVVNKADGEHHKEARLAARELSAAIR  247 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEEEEECCCGGGHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEEEEECCCCcChhHHHHHHHHHHHHHh
Confidence            45688999999532   22334589999999999876554433                                     


Q ss_pred             ------------hheeccccCCCchHHHHHHHHHHhc
Q psy125          315 ------------YYDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       315 ------------~~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                                  +++|||++|.||+++|.+|.+.+..
T Consensus       248 ~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          248 LIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             hccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence                        3569999999999999999998754

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.70  E-value=2e-08  Score=92.42  Aligned_cols=118  Identities=12%  Similarity=0.058  Sum_probs=74.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcC----CCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc--------hh
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTG----EFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL--------RD   76 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~----~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~--------~~   76 (385)
                      ..+|+++|.+|+|||||+|+|++.    .......+.+|+|+....+....+   +.++||||.......        ..
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            357999999999999999998764    123445677788888777665543   789999997533211        11


Q ss_pred             hhh--ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH
Q psy125           77 GYY--IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA  132 (385)
Q Consensus        77 ~~~--~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~  132 (385)
                      .++  ...+.++++++.........+.. +..+  ...+.|+++++||.|........
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l--~~~~~~~~~v~~k~d~~~~~~~~  293 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGLAR-LDYI--KGGRRSFVCYMANELTVHRTKLE  293 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE-EEEE--ESSSEEEEEEECTTSCEEEEEGG
T ss_pred             HHhcccccCceEEEEcCCceEEECCEEE-EEEc--cCCCceEEEEecCCcccccccHH
Confidence            222  56788888887642211111000 0011  11467899999999986544433

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.69  E-value=2e-08  Score=86.04  Aligned_cols=45  Identities=20%  Similarity=0.124  Sum_probs=41.3

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHh
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQD  199 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~  199 (385)
                      ..+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.
T Consensus       128 ~~~LSgGqkqrv~lAral~~~p~lll-----LDEPts~LD~~~~~~i~~~  172 (229)
T 2pze_A          128 GITLSGGQRARISLARAVYKDADLYL-----LDSPFGYLDVLTEKEIFES  172 (229)
T ss_dssp             CTTSCHHHHHHHHHHHHHHSCCSEEE-----EESTTTTSCHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHhcCCCEEE-----EECcccCCCHHHHHHHHHH
Confidence            35678999999999999999999999     9999999999999888774

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.67  E-value=8.7e-09  Score=102.50  Aligned_cols=92  Identities=21%  Similarity=0.166  Sum_probs=64.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC--cccc--cccc------------ceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEK--KYVA------------TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF  286 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  286 (385)
                      ...+|+++|..|+|||||+++++..  .+..  ....            ..+.+.......+....+.+.||||||+..|
T Consensus        11 ~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   90 (691)
T 1dar_A           11 RLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF   90 (691)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch
Confidence            3579999999999999999998832  1110  0000            1122222222233334577999999999999


Q ss_pred             CcccccccccCcEEEEEEeCCChhhhhh
Q psy125          287 GGLRDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       287 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      ...+..+++.+|++|+|+|+++..+++.
T Consensus        91 ~~~~~~~l~~aD~~ilVvDa~~g~~~~t  118 (691)
T 1dar_A           91 TIEVERSMRVLDGAIVVFDSSQGVEPQS  118 (691)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTCSCHHH
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCcchhh
Confidence            9888999999999999999999887766

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.65  E-value=9.9e-08  Score=88.44  Aligned_cols=137  Identities=16%  Similarity=0.269  Sum_probs=69.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcc--cccceeeeEEEEEEeCCee--EEEEEEeCCCcccccc------------
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKY--VATLGVEVHPLVFHTNRGA--IRFNVWDTAGQEKFGG------------   73 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~--~~~~g~t~~~~~~~~~~~~--~~~~i~Dt~g~~~~~~------------   73 (385)
                      ++++|+|++|+|||||+|.|++-......  ....+.++....+..+...  ..++++|++|......            
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i  122 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFI  122 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHH
Confidence            56999999999999999997775432211  1123334433333333322  3688999988642210            


Q ss_pred             --chhhh-------------hccC--c-EEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHH
Q psy125           74 --LRDGY-------------YIQG--Q-CAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSI  135 (385)
Q Consensus        74 --~~~~~-------------~~~~--d-~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~  135 (385)
                        ....+             ...+  | +++|+.|.........+ ..+..   ...+.++++|.||+|...........
T Consensus       123 ~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~---L~~~~~vI~Vi~KtD~Lt~~E~~~l~  198 (427)
T 2qag_B          123 DAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKK---LDSKVNIIPIIAKADAISKSELTKFK  198 (427)
T ss_dssp             HHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHH---TCSCSEEEEEESCGGGSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHH---HhhCCCEEEEEcchhccchHHHHHHH
Confidence              00011             1122  2 35566666543322221 12222   23578999999999976544433222


Q ss_pred             HH----HHhcCCeEEEEcC
Q psy125          136 VF----HRKKNLQYYDISA  150 (385)
Q Consensus       136 ~~----~~~~~~~~~~~Sa  150 (385)
                      ..    ....+..++.+|.
T Consensus       199 ~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          199 IKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             HHHHHHHBTTBCCCCCCC-
T ss_pred             HHHHHHHHHcCCcEEecCC
Confidence            22    2334566666664

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.65  E-value=2.5e-08  Score=91.78  Aligned_cols=84  Identities=15%  Similarity=0.071  Sum_probs=55.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEE--EeCCe---------------eEEEEEEeCCCcccc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF--HTNRG---------------AIRFNVWDTAGQEKF   71 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~--~~~~~---------------~~~~~i~Dt~g~~~~   71 (385)
                      ..+|+|+|+||||||||+|+|.+... ....+.+++|..+...  .....               ...+.+||+||....
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~~-a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHSTT-TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCc-ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            57999999999999999999777442 2333444444433322  22211               146889999996432


Q ss_pred             cc-------chhhhhccCcEEEEEEeCCC
Q psy125           72 GG-------LRDGYYIQGQCAIIMFDVTS   93 (385)
Q Consensus        72 ~~-------~~~~~~~~~d~illV~d~~~   93 (385)
                      ..       .....++++|++++|+|+.+
T Consensus        99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            11       23445688999999999875

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.65  E-value=1e-08  Score=102.02  Aligned_cols=92  Identities=20%  Similarity=0.200  Sum_probs=64.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhc--Cccccc--------ccc------ceeeEEEEEEEEeCCeeEEEEEeeCCCcccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLT--GEFEKK--------YVA------TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF  286 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~--~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~  286 (385)
                      ...+|+++|.+|+|||||+++++.  +.+...        +..      ..|.+.......+....+.+.||||||+..|
T Consensus         9 ~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df   88 (693)
T 2xex_A            9 KTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDF   88 (693)
T ss_dssp             TEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcch
Confidence            457999999999999999999884  222110        000      1122222222223333577899999999999


Q ss_pred             CcccccccccCcEEEEEEeCCChhhhhh
Q psy125          287 GGLRDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       287 ~~~~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      ......+++.+|++|+|+|+++..+++.
T Consensus        89 ~~~~~~~l~~aD~~llVvDa~~g~~~~~  116 (693)
T 2xex_A           89 TVEVERSLRVLDGAVTVLDAQSGVEPQT  116 (693)
T ss_dssp             CHHHHHHHHHCSEEEEEEETTTBSCHHH
T ss_pred             HHHHHHHHHHCCEEEEEECCCCCCcHHH
Confidence            9888899999999999999999877766

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.64  E-value=1.4e-08  Score=99.40  Aligned_cols=53  Identities=25%  Similarity=0.251  Sum_probs=47.0

Q ss_pred             EEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          146 YDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       146 ~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                      ..-...+.+|+++++..|++++..+|++++     +|||++++|+.....+.+.+++.
T Consensus       473 ~~~~~~~LSgGqrQrv~lARal~~~p~ill-----lDEpts~LD~~~~~~i~~~l~~~  525 (587)
T 3qf4_A          473 VERGGRNFSGGQKQRLSIARALVKKPKVLI-----LDDCTSSVDPITEKRILDGLKRY  525 (587)
T ss_dssp             ECSSSCSSCHHHHHHHHHHHHHHTCCSEEE-----EESCCTTSCHHHHHHHHHHHHHH
T ss_pred             hcCCCCCcCHHHHHHHHHHHHHHcCCCEEE-----EECCcccCCHHHHHHHHHHHHHh
Confidence            333456788999999999999999999999     99999999999999999988764

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.63  E-value=2.9e-08  Score=98.84  Aligned_cols=92  Identities=16%  Similarity=0.112  Sum_probs=65.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC--ccccc-----------ccc---ceeeEEEEEEEEeC-------CeeEEEEEee
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEKK-----------YVA---TLGVEVHPLVFHTN-------RGAIRFNVWD  279 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~~-----------~~~---~~~~~~~~~~~~~~-------~~~~~l~i~D  279 (385)
                      ...+|+++|..++|||||+++++..  .+...           +.+   ..|.|.......+.       +..+.+.|||
T Consensus         9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liD   88 (704)
T 2rdo_7            9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIID   88 (704)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEe
Confidence            3478999999999999999998732  22110           000   12223322222222       2347899999


Q ss_pred             CCCccccCcccccccccCcEEEEEEeCCChhhhhh
Q psy125          280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       280 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      |||+..|......+++.+|++|+|+|+++..+++.
T Consensus        89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt  123 (704)
T 2rdo_7           89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQS  123 (704)
T ss_pred             CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHH
Confidence            99999999888899999999999999998876655

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=98.61  E-value=6.8e-08  Score=88.35  Aligned_cols=87  Identities=13%  Similarity=0.029  Sum_probs=61.5

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc----c---cccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR----D---GYYI  295 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~---~~~~  295 (385)
                      ...+|.++|.||||||||+|.+....  ......+++|.......+......+.++||||........    .   ...+
T Consensus        71 g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~  148 (376)
T 4a9a_A           71 GVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR  148 (376)
T ss_dssp             SSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence            35689999999999999999976432  3334556677666655444445678999999975432211    1   1467


Q ss_pred             cCcEEEEEEeCCChhh
Q psy125          296 QGQCAIIMFDVTSRIT  311 (385)
Q Consensus       296 ~~~~~ilv~d~~~~~s  311 (385)
                      .||++++|.|++++..
T Consensus       149 ~ad~il~vvD~~~p~~  164 (376)
T 4a9a_A          149 TCNLLFIILDVNKPLH  164 (376)
T ss_dssp             HCSEEEEEEETTSHHH
T ss_pred             hcCccccccccCccHH
Confidence            9999999999998754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.60  E-value=3.3e-08  Score=96.55  Aligned_cols=53  Identities=15%  Similarity=0.175  Sum_probs=48.3

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE  205 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~  205 (385)
                      ....+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...
T Consensus       467 ~~~~~LSGGe~QRv~iAraL~~~p~lLl-----LDEPt~~LD~~~~~~l~~~l~~l~~  519 (607)
T 3bk7_A          467 RNVEDLSGGELQRVAIAATLLRDADIYL-----LDEPSAYLDVEQRLAVSRAIRHLME  519 (607)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHTSCCSEEE-----EECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCEEE-----EeCCccCCCHHHHHHHHHHHHHHHH
Confidence            3456778999999999999999999999     9999999999999999999988754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.59  E-value=3.1e-08  Score=95.40  Aligned_cols=53  Identities=17%  Similarity=0.179  Sum_probs=48.3

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       382 ~~~~LSGGq~QRv~iAraL~~~p~lLl-----LDEPT~gLD~~~~~~i~~~l~~l~~~  434 (538)
T 3ozx_A          382 NVNDLSGGELQKLYIAATLAKEADLYV-----LDQPSSYLDVEERYIVAKAIKRVTRE  434 (538)
T ss_dssp             BGGGCCHHHHHHHHHHHHHHSCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EeCCccCCCHHHHHHHHHHHHHHHHh
Confidence            455678999999999999999999999     99999999999999999999887654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.57  E-value=5.8e-09  Score=102.35  Aligned_cols=49  Identities=12%  Similarity=0.221  Sum_probs=45.2

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      .+.+|+++++..|++++..+|++++     +|||++++|+.....+.+.+++..
T Consensus       490 ~~LSgGq~Qrv~iAral~~~p~ill-----lDEpts~LD~~~~~~i~~~l~~~~  538 (598)
T 3qf4_B          490 EDLSQGQRQLLAITRAFLANPKILI-----LDEATSNVDTKTEKSIQAAMWKLM  538 (598)
T ss_dssp             TTSCHHHHHHHHHHHHHHTCCSEEE-----ECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEE-----EECCccCCCHHHHHHHHHHHHHHc
Confidence            4577999999999999999999999     999999999999999999888753

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.57  E-value=3.7e-08  Score=96.05  Aligned_cols=53  Identities=8%  Similarity=0.013  Sum_probs=47.3

Q ss_pred             EEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          147 DISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       147 ~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      .....+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++..
T Consensus       216 ~~~~~~LSgGe~Qrv~iAraL~~~p~lll-----lDEPts~LD~~~~~~l~~~l~~l~  268 (608)
T 3j16_B          216 KRDIEKLSGGELQRFAIGMSCVQEADVYM-----FDEPSSYLDVKQRLNAAQIIRSLL  268 (608)
T ss_dssp             GSCTTTCCHHHHHHHHHHHHHHSCCSEEE-----EECTTTTCCHHHHHHHHHHHHGGG
T ss_pred             CCChHHCCHHHHHHHHHHHHHHhCCCEEE-----EECcccCCCHHHHHHHHHHHHHHH
Confidence            34466788999999999999999999999     999999999999999988887753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.57  E-value=1.5e-09  Score=106.14  Aligned_cols=49  Identities=20%  Similarity=0.187  Sum_probs=44.5

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                      ..+.+|+++++..|++++..+|++++     +|||++++|+.....+.+.+++.
T Consensus       475 g~~LSgGq~Qrv~lAral~~~p~ill-----lDEpts~LD~~~~~~i~~~l~~~  523 (578)
T 4a82_A          475 GVKLSGGQKQRLSIARIFLNNPPILI-----LDEATSALDLESESIIQEALDVL  523 (578)
T ss_dssp             GTTSCHHHHHHHHHHHHHHHCCSEEE-----EESTTTTCCHHHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHHcCCCEEE-----EECccccCCHHHHHHHHHHHHHH
Confidence            34678999999999999999999999     99999999999999888887664

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.57  E-value=2.9e-09  Score=104.28  Aligned_cols=50  Identities=20%  Similarity=0.193  Sum_probs=46.0

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      ..+.+|+++++..|++++..+|++++     +|||++++|+.....+.+.+++..
T Consensus       478 ~~~LSgGq~qrl~iAral~~~p~ill-----lDEpts~LD~~~~~~i~~~l~~~~  527 (582)
T 3b60_A          478 GVLLSGGQRQRIAIARALLRDSPILI-----LDEATSALDTESERAIQAALDELQ  527 (582)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHCCSEEE-----EETTTSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCCEEE-----EECccccCCHHHHHHHHHHHHHHh
Confidence            45678999999999999999999999     999999999999999999888763

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.56  E-value=8.1e-08  Score=79.23  Aligned_cols=104  Identities=7%  Similarity=-0.053  Sum_probs=66.9

Q ss_pred             CCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHH---HH-h--cCCCCEEEEEeCC-CCcchhhhHHHHHH
Q psy125           65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL---VR-V--CENIPIVLCGNKV-DIKDRKVKAKSIVF  137 (385)
Q Consensus        65 t~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l---~~-~--~~~~~~ilv~nK~-Dl~~~~~~~~~~~~  137 (385)
                      .+|+...+.+|..|+.+.|++|+|+|.+|....+ ....+..+   .. .  ..+.|+++++||. |+.......++.+.
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~  187 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  187 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence            3478889999999999999999999999886554 33333222   22 1  2467999999985 67543333333222


Q ss_pred             HH----hcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          138 HR----KKNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       138 ~~----~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      ..    .....+..|||.+|.|+.+-++||...+..
T Consensus       188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence            11    134478899999999999999999876543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.56  E-value=4.1e-08  Score=94.82  Aligned_cols=52  Identities=15%  Similarity=0.185  Sum_probs=47.6

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE  205 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~  205 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...
T Consensus       398 ~~~~LSGGe~qrv~lAraL~~~p~lLl-----LDEPt~~LD~~~~~~i~~~l~~l~~  449 (538)
T 1yqt_A          398 EVNELSGGELQRVAIAATLLRDADIYL-----LDEPSAYLDVEQRLAVSRAIRHLME  449 (538)
T ss_dssp             BGGGCCHHHHHHHHHHHHHTSCCSEEE-----EECTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHHhCCCEEE-----EeCCcccCCHHHHHHHHHHHHHHHH
Confidence            345678999999999999999999999     9999999999999999999988753

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.55  E-value=5.3e-08  Score=94.20  Aligned_cols=89  Identities=19%  Similarity=0.211  Sum_probs=58.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCcccc-ccccceeeEEEEEEEEeCC-----------------------------ee
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNR-----------------------------GA  272 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-----------------------------~~  272 (385)
                      ...+|+++|.+|+|||||+|++++..+.. .....++++........+.                             +.
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~  143 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF  143 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence            45799999999999999999999776631 1222222222111100000                             00


Q ss_pred             ----------EEEEEeeCCCccc-----------cCcccccccccCcEEEEEEeCCChhh
Q psy125          273 ----------IRFNVWDTAGQEK-----------FGGLRDGYYIQGQCAIIMFDVTSRIT  311 (385)
Q Consensus       273 ----------~~l~i~Dt~G~~~-----------~~~~~~~~~~~~~~~ilv~d~~~~~s  311 (385)
                                ..+.||||||+..           |..+...++..+|++|+|+|+++...
T Consensus       144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~  203 (550)
T 2qpt_A          144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEI  203 (550)
T ss_dssp             EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCC
T ss_pred             eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCC
Confidence                      2478999999875           33455567899999999999988533

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.55  E-value=3.1e-07  Score=80.62  Aligned_cols=117  Identities=17%  Similarity=0.256  Sum_probs=59.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCccc------ccceee-eEEEEEEeCCee--EEEEEEeCCCcccccc------
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYV------ATLGVE-VHPLVFHTNRGA--IRFNVWDTAGQEKFGG------   73 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~------~~~g~t-~~~~~~~~~~~~--~~~~i~Dt~g~~~~~~------   73 (385)
                      .++++|+|++|+|||||+|.|++-.......      +..... +....+..+...  ..++++|++|......      
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~   81 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE   81 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence            4789999999999999999977632211100      000001 111112222222  3678999998532100      


Q ss_pred             chhh----------------------hhccCcEEEEEEeCC-ChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125           74 LRDG----------------------YYIQGQCAIIMFDVT-SRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK  129 (385)
Q Consensus        74 ~~~~----------------------~~~~~d~illV~d~~-~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~  129 (385)
                      ....                      .+..+++.++++|-. .+..... ...+..+.   ...+++++.+|.|.....
T Consensus        82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~~~vI~Vi~K~D~lt~~  156 (270)
T 3sop_A           82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KVVNIIPVIAKADTMTLE  156 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TTSEEEEEETTGGGSCHH
T ss_pred             HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hcCcEEEEEeccccCCHH
Confidence            0000                      112357777777743 2222111 12333333   348899999999976543

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.53  E-value=4e-08  Score=87.04  Aligned_cols=45  Identities=20%  Similarity=0.124  Sum_probs=40.8

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHh
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQD  199 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~  199 (385)
                      ..+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.
T Consensus       157 ~~~LSgGq~QRv~lAraL~~~p~lll-----LDEPts~LD~~~~~~i~~~  201 (290)
T 2bbs_A          157 GITLSGGQRARISLARAVYKDADLYL-----LDSPFGYLDVLTEKEIFES  201 (290)
T ss_dssp             -CCCCHHHHHHHHHHHHHHSCCSEEE-----EESTTTTCCHHHHHHHHHH
T ss_pred             cCcCCHHHHHHHHHHHHHHCCCCEEE-----EECCcccCCHHHHHHHHHH
Confidence            45677999999999999999999999     9999999999999888774

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.51  E-value=8.4e-08  Score=102.16  Aligned_cols=51  Identities=20%  Similarity=0.264  Sum_probs=45.3

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      .-.+.+|+++++..|+|+++.+|++++     +|||++++|+.....+.+.+.+..
T Consensus       551 ~G~~LSGGQkQRiaiARAl~~~~~Ili-----LDE~tSaLD~~te~~i~~~l~~~~  601 (1321)
T 4f4c_A          551 RGTQLSGGQKQRIAIARALVRNPKILL-----LDEATSALDAESEGIVQQALDKAA  601 (1321)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCTTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHccCCCEEE-----EecccccCCHHHHHHHHHHHHHHh
Confidence            345678999999999999999999999     999999999999888888887654

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.51  E-value=9e-09  Score=99.16  Aligned_cols=50  Identities=14%  Similarity=0.146  Sum_probs=45.9

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++.
T Consensus       135 ~~~~LSgGe~Qrv~iA~aL~~~p~ill-----lDEPts~LD~~~~~~l~~~l~~l  184 (538)
T 3ozx_A          135 DANILSGGGLQRLLVAASLLREADVYI-----FDQPSSYLDVRERMNMAKAIREL  184 (538)
T ss_dssp             BGGGCCHHHHHHHHHHHHHHSCCSEEE-----EESTTTTCCHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHHcCCCEEE-----EECCcccCCHHHHHHHHHHHHHH
Confidence            355678999999999999999999999     99999999999999999888875

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.51  E-value=2.1e-08  Score=91.66  Aligned_cols=64  Identities=9%  Similarity=-0.029  Sum_probs=43.9

Q ss_pred             eEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh-------------------------------------
Q psy125          272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN-------------------------------------  314 (385)
Q Consensus       272 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~-------------------------------------  314 (385)
                      +..+.++||+|....   .......+|++++|+|.+++...+.                                     
T Consensus       166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~~il~~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~  242 (349)
T 2www_A          166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKRGIIEMADLVAVTKSDGDLIVPARRIQAEYVSALK  242 (349)
T ss_dssp             TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC------------CCSCSEEEECCCSGGGHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHHHHHhcCCEEEEeeecCCCchhHHHHHHHHHHHHH
Confidence            346789999996421   2334678999999998864332110                                     


Q ss_pred             ------------hheeccccCCCchHHHHHHHHHHh
Q psy125          315 ------------YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       315 ------------~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                                  ++.|||++|.|+++++.+|.+.+.
T Consensus       243 ~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          243 LLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             TCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence                        256999999999999999988763

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.51  E-value=2e-08  Score=106.93  Aligned_cols=47  Identities=17%  Similarity=0.255  Sum_probs=42.6

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHH
Q psy125          151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKE  202 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~  202 (385)
                      .+.+|+++++..|+|++..+|++++     +|||++.+|+.....+.+.+++
T Consensus      1216 ~~LSgGQrQriaiARAllr~~~ILi-----LDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A         1216 TQLSGGQKQRIAIARALVRNPKILL-----LDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp             CSSCHHHHHHHHHHHHHHSCCSEEE-----EESCCCSTTSHHHHHHHHHHTT
T ss_pred             cccCHHHHHHHHHHHHHHhCCCEEE-----EeCccccCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999     9999999999998888777654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.48  E-value=1.4e-06  Score=80.80  Aligned_cols=156  Identities=17%  Similarity=0.178  Sum_probs=83.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccce---eeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhh-----c
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG---VEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYY-----I   80 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g---~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~-----~   80 (385)
                      ...++|+|+||||||||+|.+++-.......-..+   +++...... ....-.+.++|++|..........++     .
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~  147 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  147 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCCC
Confidence            45899999999999999999777332222111111   111111111 11112478899998643222222222     2


Q ss_pred             cCcEEEEEEeCCChhhhhcHH-HHHHHHHHhcCCCCEEEEEeCCCCcc------------hhh-hHHHHHHH----Hhc-
Q psy125           81 QGQCAIIMFDVTSRITYKNVP-NWHRDLVRVCENIPIVLCGNKVDIKD------------RKV-KAKSIVFH----RKK-  141 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~-~~~~~l~~~~~~~~~ilv~nK~Dl~~------------~~~-~~~~~~~~----~~~-  141 (385)
                      ..+..++ ++....   +... .+...+..  .+.|+++|.||.|+.-            ... ...+..+.    ... 
T Consensus       148 ~~~~~~~-lS~G~~---~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g  221 (413)
T 1tq4_A          148 EYDFFII-ISATRF---KKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  221 (413)
T ss_dssp             GCSEEEE-EESSCC---CHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCeEE-eCCCCc---cHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3354444 665421   1111 22223332  4689999999988631            111 12222232    122 


Q ss_pred             --CCeEEEEcC--CCCCChHHHHHHHHHHHhcCC
Q psy125          142 --NLQYYDISA--KSNYNFEKPFLWLARKLIGDP  171 (385)
Q Consensus       142 --~~~~~~~Sa--~~~~gi~~l~~~i~~~l~~~~  171 (385)
                        ...++.+|+  ..+.|++++.+.+...+...+
T Consensus       222 ~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~  255 (413)
T 1tq4_A          222 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK  255 (413)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred             CCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence              236788999  455569999999988876554

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.47  E-value=1.3e-07  Score=92.13  Aligned_cols=53  Identities=8%  Similarity=-0.056  Sum_probs=48.4

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE  205 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~  205 (385)
                      ....+.+|+++++..|++++..+|++++     +|||+.++|+..+..+.+.+++...
T Consensus       463 ~~~~~LSGGqkQRv~iAraL~~~p~lLl-----LDEPT~gLD~~~~~~i~~ll~~l~~  515 (608)
T 3j16_B          463 QEVQHLSGGELQRVAIVLALGIPADIYL-----IDEPSAYLDSEQRIICSKVIRRFIL  515 (608)
T ss_dssp             SBSSSCCHHHHHHHHHHHHTTSCCSEEE-----ECCTTTTCCHHHHHHHHHHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHHHHHHhCCCEEE-----EECCCCCCCHHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999     9999999999999999999988754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.46  E-value=1.1e-07  Score=86.54  Aligned_cols=64  Identities=9%  Similarity=-0.019  Sum_probs=45.9

Q ss_pred             eEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh-------------------------------------
Q psy125          272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN-------------------------------------  314 (385)
Q Consensus       272 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~-------------------------------------  314 (385)
                      ++.+.||||||...+.   ....+.+|++|+|+|.+....++.                                     
T Consensus       148 ~~~i~liDTpG~~~~~---~~~~~~aD~vl~Vvd~~~~~~~~~l~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~  224 (341)
T 2p67_A          148 GYDVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALH  224 (341)
T ss_dssp             TCSEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHHHHHHCSEEEECCCCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCccchH---HHHHHhCCEEEEEEeCCccHHHHHHHHhhhcccCEEEEECCCCCChHHHHHHHHHHHHHHH
Confidence            4568999999975432   224689999999999875443221                                     


Q ss_pred             ------------hheeccccCCCchHHHHHHHHHHh
Q psy125          315 ------------YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       315 ------------~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                                  ++++||++|.|+++++.+|.+.+.
T Consensus       225 ~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          225 ILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             hccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence                        146999999999999999999764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.42  E-value=2e-07  Score=82.44  Aligned_cols=60  Identities=17%  Similarity=0.222  Sum_probs=36.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK   70 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~   70 (385)
                      ...++|+++|.+|||||||+|+|++. ....+.+.+|+|+.........   .+.++||||...
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  177 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGK---ELELLDTPGILW  177 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETT---TEEEEECCCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcCC
Confidence            35689999999999999999996654 4445667788887765444322   578999999753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.41  E-value=2.3e-07  Score=84.89  Aligned_cols=78  Identities=17%  Similarity=0.108  Sum_probs=54.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccc------cccccceeeEEEEEEEEeCC-------------------eeEEEEEee
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFE------KKYVATLGVEVHPLVFHTNR-------------------GAIRFNVWD  279 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-------------------~~~~l~i~D  279 (385)
                      ++++++|.+|||||||++++......      ....+++|..      .+..                   ....+.+||
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~------~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD   75 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVV------PLEDERLYALQRTFAKGERVPPVVPTHVEFVD   75 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEE------ECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeE------ecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence            57999999999999999998754311      1233444321      1111                   234689999


Q ss_pred             CCCccccC----ccccc---ccccCcEEEEEEeCCC
Q psy125          280 TAGQEKFG----GLRDG---YYIQGQCAIIMFDVTS  308 (385)
Q Consensus       280 t~G~~~~~----~~~~~---~~~~~~~~ilv~d~~~  308 (385)
                      |||+.++.    .+...   +++.+|++++|+|+++
T Consensus        76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             CCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            99998763    23322   5789999999999987

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.41  E-value=2.1e-07  Score=89.90  Aligned_cols=91  Identities=18%  Similarity=0.253  Sum_probs=62.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhc--Cccc------------cccc------cceeeEEEEEEEEeCCeeEEEEEeeCCCc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLT--GEFE------------KKYV------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQ  283 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~--~~~~------------~~~~------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~  283 (385)
                      .-++.|+|..++|||||..+++.  +...            ..+.      ..-|.|.....+.+..+.+.++|+||||.
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH  110 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence            35799999999999999999872  1100            0000      11122222233344456678999999999


Q ss_pred             cccCcccccccccCcEEEEEEeCCChhhhhh
Q psy125          284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       284 ~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      ..|..-....++-+|++|+|+|..+.-.-+.
T Consensus       111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT  141 (548)
T 3vqt_A          111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQT  141 (548)
T ss_dssp             GGCSHHHHHHHHSCSEEEEEEETTTBSCHHH
T ss_pred             HHHHHHHHHHHHhcCceEEEeecCCCccccc
Confidence            9999888889999999999999987655444

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.39  E-value=1.8e-07  Score=91.31  Aligned_cols=51  Identities=12%  Similarity=0.127  Sum_probs=46.5

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++..
T Consensus       225 ~~~~LSGGekQRvaIAraL~~~P~lLl-----LDEPTs~LD~~~~~~l~~~L~~l~  275 (607)
T 3bk7_A          225 ELHQLSGGELQRVAIAAALLRKAHFYF-----FDEPSSYLDIRQRLKVARVIRRLA  275 (607)
T ss_dssp             BGGGCCHHHHHHHHHHHHHHSCCSEEE-----EECTTTTCCHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEE-----EECCcccCCHHHHHHHHHHHHHHH
Confidence            355678999999999999999999999     999999999999999999888764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.39  E-value=4.4e-07  Score=86.25  Aligned_cols=114  Identities=17%  Similarity=0.119  Sum_probs=62.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc-----CCCCCcccc----------------cceeeeEEEEEE-------------e
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLT-----GEFEKKYVA----------------TLGVEVHPLVFH-------------T   53 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~-----~~~~~~~~~----------------~~g~t~~~~~~~-------------~   53 (385)
                      +...|+++|++||||||+++.|..     +.....+..                ..++........             .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~  179 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF  179 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence            356899999999999999999772     111110000                001111110000             0


Q ss_pred             CCeeEEEEEEeCCCcccccc-chhh---h--hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCE-EEEEeCCCCc
Q psy125           54 NRGAIRFNVWDTAGQEKFGG-LRDG---Y--YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI-VLCGNKVDIK  126 (385)
Q Consensus        54 ~~~~~~~~i~Dt~g~~~~~~-~~~~---~--~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~-ilv~nK~Dl~  126 (385)
                      .+..+.+.++||||...... ....   +  +..+|.+++|+|+......   ......+..   ..|+ .+++||.|..
T Consensus       180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~---~~~a~~~~~---~~~i~gvVlNK~D~~  253 (504)
T 2j37_W          180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQAC---EAQAKAFKD---KVDVASVIVTKLDGH  253 (504)
T ss_dssp             HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTH---HHHHHHHHH---HHCCCCEEEECTTSC
T ss_pred             HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccH---HHHHHHHHh---hcCceEEEEeCCccc
Confidence            11456789999999753221 1111   1  2378999999999775321   122222222   2564 7889999986


Q ss_pred             c
Q psy125          127 D  127 (385)
Q Consensus       127 ~  127 (385)
                      .
T Consensus       254 ~  254 (504)
T 2j37_W          254 A  254 (504)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.38  E-value=6.3e-07  Score=89.27  Aligned_cols=52  Identities=21%  Similarity=0.144  Sum_probs=47.0

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCC--cccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPN--LEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~--~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      ..+.+.+|+++++..|++++..+|+  +++     +|||++++|+..+..+.+.+++..
T Consensus       198 ~~~~~LSGGe~QRv~iArAL~~~p~~~lLl-----LDEPtsgLD~~~~~~l~~~l~~l~  251 (670)
T 3ux8_A          198 RSAGTLSGGEAQRIRLATQIGSRLTGVLYV-----LDEPSIGLHQRDNDRLIATLKSMR  251 (670)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHTCCCSCEEE-----EECTTTTCCGGGHHHHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHHhhCCCCCEEE-----EECCccCCCHHHHHHHHHHHHHHH
Confidence            3456788999999999999999988  999     999999999999999999988764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.36  E-value=1.4e-07  Score=91.02  Aligned_cols=50  Identities=12%  Similarity=0.119  Sum_probs=45.8

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      ..+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++..
T Consensus       156 ~~~LSgGekQRv~iAraL~~~P~lLl-----LDEPTs~LD~~~~~~l~~~L~~l~  205 (538)
T 1yqt_A          156 IQHLSGGELQRVAIAAALLRNATFYF-----FDEPSSYLDIRQRLNAARAIRRLS  205 (538)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEE-----EECCcccCCHHHHHHHHHHHHHHH
Confidence            45677999999999999999999999     999999999999999998887764

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.36  E-value=7e-07  Score=77.39  Aligned_cols=104  Identities=7%  Similarity=-0.070  Sum_probs=72.2

Q ss_pred             CCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHH---HHH-H--hcCCCCEEEEEeC-CCCcchhhhHHHHHH
Q psy125           65 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHR---DLV-R--VCENIPIVLCGNK-VDIKDRKVKAKSIVF  137 (385)
Q Consensus        65 t~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~---~l~-~--~~~~~~~ilv~nK-~Dl~~~~~~~~~~~~  137 (385)
                      .+|+...+..|..|+.+.|++|+|+|.+|.+.++ ....+.   .+. .  ...+.|+++++|| .|+.......++.+.
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4678888999999999999999999999987654 222222   222 1  1367899999996 577654333333222


Q ss_pred             HH----hcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          138 HR----KKNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       138 ~~----~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      ..    .....+..+||.+|.|+.+-+++|...+..
T Consensus       273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            11    133478899999999999999999988643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.30  E-value=1.7e-07  Score=99.62  Aligned_cols=50  Identities=18%  Similarity=0.265  Sum_probs=44.5

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      ..+.+|+++++..|++++..+|++++     +|||++++|+.....+.+.++...
T Consensus       524 g~~LSgGq~QriaiARal~~~p~ili-----LDEpts~LD~~~~~~i~~~l~~~~  573 (1284)
T 3g5u_A          524 GAQLSGGQKQRIAIARALVRNPKILL-----LDEATSALDTESEAVVQAALDKAR  573 (1284)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHCCSEEE-----EESTTCSSCHHHHHHHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHhcCCCEEE-----EECCCCCCCHHHHHHHHHHHHHHc
Confidence            34678999999999999999999999     999999999999888888776643

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.30  E-value=2.4e-07  Score=80.94  Aligned_cols=57  Identities=21%  Similarity=0.209  Sum_probs=36.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK   70 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~   70 (385)
                      ++++++|.+|+|||||+|+|.+... ..+.+++|+|+........   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc-cccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            5999999999999999999775443 3456777887766544432   2578999999754

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=98.26  E-value=1.9e-07  Score=76.99  Aligned_cols=60  Identities=8%  Similarity=-0.010  Sum_probs=45.7

Q ss_pred             CCccccCcccccccccCcEEEEEEeCCChhhhhh----------------------------------------------
Q psy125          281 AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------------------------  314 (385)
Q Consensus       281 ~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~----------------------------------------------  314 (385)
                      .||..++.+|..||.++||+|+|.|.+|+..++.                                              
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L~  189 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHELH  189 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHcC
Confidence            4899999999999999999999999999832111                                              


Q ss_pred             ---------hheeccccCCCchHHHHHHHHHHhcC
Q psy125          315 ---------YYDISAKSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       315 ---------~~e~Sak~~~~v~~~f~~l~~~i~~~  340 (385)
                               +..|||++|+|+.|.++||++.+..+
T Consensus       190 L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          190 LNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             GGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             CcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence                     78899999999999999999877544

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.26  E-value=1.4e-06  Score=71.42  Aligned_cols=45  Identities=7%  Similarity=0.057  Sum_probs=38.9

Q ss_pred             CCChHHHHHHHHHH-----HhcCCCcccccCCCCCC--CCCCCChhhhhhhHHhHHH
Q psy125          153 NYNFEKPFLWLARK-----LIGDPNLEFVAMPALLP--PEVTMDPQWQSRIEQDLKE  202 (385)
Q Consensus       153 ~~gi~~l~~~i~~~-----l~~~~~~~~~~~~~~~e--p~~~~d~~~~~~~~~~l~~  202 (385)
                      .+|+++++..++++     +..+|++++     +||  |+..+|+..+..+.+.+.+
T Consensus        77 lSgG~~qr~~la~aa~~~~l~~~p~lli-----lDEigp~~~ld~~~~~~l~~~l~~  128 (178)
T 1ye8_A           77 VQYFEELAIPILERAYREAKKDRRKVII-----IDEIGKMELFSKKFRDLVRQIMHD  128 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCEEE-----ECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHhhccccccccCCCEEE-----EeCCCCcccCCHHHHHHHHHHHhc
Confidence            44999999999996     899999999     999  9999999888777776643

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.24  E-value=2.1e-07  Score=98.90  Aligned_cols=48  Identities=19%  Similarity=0.265  Sum_probs=44.2

Q ss_pred             CCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHH
Q psy125          151 KSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEA  203 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~  203 (385)
                      ...+|+++++..|++++..+|++++     +|||++++|+.....+.+.+++.
T Consensus      1170 ~~LSgGq~Qrv~iARal~~~p~iLi-----LDEpTs~lD~~~~~~i~~~l~~~ 1217 (1284)
T 3g5u_A         1170 TQLSGGQKQRIAIARALVRQPHILL-----LDEATSALDTESEKVVQEALDKA 1217 (1284)
T ss_dssp             CSSCHHHHHHHHHHHHHHHCCSSEE-----EESCSSSCCHHHHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHcCCCEEE-----EeCCcccCCHHHHHHHHHHHHHh
Confidence            4678999999999999999999999     99999999999999999888763

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.21  E-value=1.3e-06  Score=80.40  Aligned_cols=85  Identities=15%  Similarity=0.072  Sum_probs=53.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEE--EEEEEEeCCe---------------eEEEEEeeCCCccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV--HPLVFHTNRG---------------AIRFNVWDTAGQEK  285 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------------~~~l~i~Dt~G~~~  285 (385)
                      ...++.++|.+||||||+++.+.+..+. .....++++.  ..-.+.+.+.               ...+.+||+||...
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a-~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVLG-NPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTT-STTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcc-cccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            3578999999999999999998865431 1111111111  1112233331               13578999999754


Q ss_pred             cCc----c---cccccccCcEEEEEEeCCC
Q psy125          286 FGG----L---RDGYYIQGQCAIIMFDVTS  308 (385)
Q Consensus       286 ~~~----~---~~~~~~~~~~~ilv~d~~~  308 (385)
                      ..+    +   .-.+++.+|+++.|+|+++
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            322    1   2235689999999999975

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.16  E-value=2.5e-06  Score=86.79  Aligned_cols=49  Identities=18%  Similarity=0.099  Sum_probs=45.0

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKE  202 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~  202 (385)
                      ...+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++
T Consensus       545 ~~~~LSGGqkQRvaLArAL~~~P~lLL-----LDEPTs~LD~~~~~~l~~~L~~  593 (986)
T 2iw3_A          545 PISALSGGWKMKLALARAVLRNADILL-----LDEPTNHLDTVNVAWLVNYLNT  593 (986)
T ss_dssp             BGGGCCHHHHHHHHHHHHHHTTCSEEE-----EESTTTTCCHHHHHHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHHHHhcCCCEEE-----EECCccCCCHHHHHHHHHHHHh
Confidence            345678999999999999999999999     9999999999999999988876

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.10  E-value=1.6e-06  Score=85.91  Aligned_cols=26  Identities=19%  Similarity=0.411  Sum_probs=23.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCcc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEF  249 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~  249 (385)
                      ..+|+++|.+++||||++|.+++..+
T Consensus        51 lp~I~vvG~~saGKSSllnaL~g~~~   76 (772)
T 3zvr_A           51 LPQIAVVGGQSAGKSSVLENFVGRDF   76 (772)
T ss_dssp             CSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCc
Confidence            46899999999999999999887655

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.09  E-value=3.4e-07  Score=90.32  Aligned_cols=88  Identities=16%  Similarity=0.179  Sum_probs=63.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc--Ccccc--------ccc------cceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLT--GEFEK--------KYV------ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG  288 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~--~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~  288 (385)
                      -+|.|+|...+|||||..+++.  +....        .+.      ..-|.|.....+.+..+.+.++|+||||...|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            3689999999999999999872  21111        000      0113344444445566677899999999999998


Q ss_pred             ccccccccCcEEEEEEeCCChhhh
Q psy125          289 LRDGYYIQGQCAIIMFDVTSRITY  312 (385)
Q Consensus       289 ~~~~~~~~~~~~ilv~d~~~~~s~  312 (385)
                      -....++-+|++|+|+|+.+.-.-
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~  106 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQA  106 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcH
Confidence            888899999999999999875443

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.05  E-value=8.7e-07  Score=76.82  Aligned_cols=61  Identities=8%  Similarity=-0.009  Sum_probs=50.8

Q ss_pred             CCCccccCcccccccccCcEEEEEEeCCChhhhhh---------------------------------------------
Q psy125          280 TAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------------------------  314 (385)
Q Consensus       280 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~---------------------------------------------  314 (385)
                      ..||+..+.+|..||.++||+|+|+|.+|+..++.                                             
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~L  273 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL  273 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHHc
Confidence            36899999999999999999999999999853211                                             


Q ss_pred             ----------hheeccccCCCchHHHHHHHHHHhcC
Q psy125          315 ----------YYDISAKSNYNFEKPFLWLARKLIGD  340 (385)
Q Consensus       315 ----------~~e~Sak~~~~v~~~f~~l~~~i~~~  340 (385)
                                +..|||.+|+|+.|.++||++.+..+
T Consensus       274 ~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          274 HLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             TGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             CCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence                      78899999999999999999988543

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.00  E-value=7.5e-06  Score=71.49  Aligned_cols=24  Identities=42%  Similarity=0.582  Sum_probs=20.9

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHh
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .....+++.|.+||||||+++.+.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La   35 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFG   35 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHH
Confidence            345789999999999999999976

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.00  E-value=2e-05  Score=73.37  Aligned_cols=107  Identities=14%  Similarity=0.026  Sum_probs=61.1

Q ss_pred             EEEEEEeCCCccccccch------hhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh
Q psy125           58 IRFNVWDTAGQEKFGGLR------DGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK  131 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~------~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~  131 (385)
                      +.+.++||+|........      ......+|.+++|+|+......   ......+..  ......+++||.|...... 
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a---~~~a~~f~~--~~~i~gVIlTKlD~~~~gG-  256 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQA---YNQALAFKE--ATPIGSIIVTKLDGSAKGG-  256 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH---HHHHHHHHH--SCTTEEEEEECCSSCSSHH-
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhH---HHHHHHHHh--hCCCeEEEEECCCCccccc-
Confidence            678899999964322111      1123468999999998764322   222333332  2234568899999864322 


Q ss_pred             HHHHHHHHhcCCeEEEEcCCCCCChHHH----HHHHHHHHhcCCCc
Q psy125          132 AKSIVFHRKKNLQYYDISAKSNYNFEKP----FLWLARKLIGDPNL  173 (385)
Q Consensus       132 ~~~~~~~~~~~~~~~~~Sa~~~~gi~~l----~~~i~~~l~~~~~~  173 (385)
                       .........+.++..++.  |.+++++    -..++..+.+..++
T Consensus       257 -~~ls~~~~~g~PI~fig~--Ge~vddL~~f~~~~~~~~llg~gd~  299 (443)
T 3dm5_A          257 -GALSAVAATGAPIKFIGT--GEKIDDIEPFDPPRFVSRLLGLGDI  299 (443)
T ss_dssp             -HHHHHHHTTCCCEEEEEC--SSSTTCEEECCHHHHHHHHTTTTCH
T ss_pred             -HHHHHHHHHCCCEEEEEc--CCChHHhhhCCHHHHHHHHcCCCcH
Confidence             223344456778877775  6666543    24555666554433

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.00  E-value=2.6e-06  Score=69.32  Aligned_cols=37  Identities=16%  Similarity=0.133  Sum_probs=33.3

Q ss_pred             CCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhh
Q psy125          152 SNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQ  193 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~  193 (385)
                      ..+++++++..|++++..+|.+++     +|||+.++|+..+
T Consensus        83 ~~s~g~~qrv~iAral~~~p~~ll-----lDEPt~~Ld~~~~  119 (171)
T 4gp7_A           83 VQESARKPLIEMAKDYHCFPVAVV-----FNLPEKVCQERNK  119 (171)
T ss_dssp             CSHHHHHHHHHHHHHTTCEEEEEE-----ECCCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEE-----EeCCHHHHHHHHh
Confidence            346888999999999999999999     9999999999855

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=97.95  E-value=9.1e-06  Score=78.59  Aligned_cols=65  Identities=14%  Similarity=0.091  Sum_probs=41.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCccc-ccceeeeEEEEEE---eCCeeEEEEEEeCCCccc
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYV-ATLGVEVHPLVFH---TNRGAIRFNVWDTAGQEK   70 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~-~~~g~t~~~~~~~---~~~~~~~~~i~Dt~g~~~   70 (385)
                      ..+..+|+|+|.+|+|||||+|+|++....-.+. .+.+.|.......   .......+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            3456899999999999999999987765321111 1123333222211   123456788999999753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.93  E-value=5.1e-06  Score=84.56  Aligned_cols=48  Identities=25%  Similarity=0.173  Sum_probs=43.1

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHH
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKE  202 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~  202 (385)
                      ....+|+++++..|++++..+|++++     +|||++++|+.....+.+.+++
T Consensus       899 ~~~LSGGQkQRVaLArAL~~~P~LLL-----LDEPT~gLD~~s~~~L~~~L~~  946 (986)
T 2iw3_A          899 IRGLSGGQKVKLVLAAGTWQRPHLIV-----LDEPTNYLDRDSLGALSKALKE  946 (986)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTCCSEEE-----EECGGGTCCHHHHHHHHHHHHS
T ss_pred             ccccCHHHHHHHHHHHHHHhCCCEEE-----EECCccCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999     9999999999998887776654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.82  E-value=3.3e-05  Score=77.17  Aligned_cols=91  Identities=21%  Similarity=0.155  Sum_probs=60.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCc--------cc--cccc------cceeeEEEEEEEEe--C-----CeeEEEEEeeC
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGE--------FE--KKYV------ATLGVEVHPLVFHT--N-----RGAIRFNVWDT  280 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~--------~~--~~~~------~~~~~~~~~~~~~~--~-----~~~~~l~i~Dt  280 (385)
                      .-+++|+|....|||||..+++...        ..  ..+.      ..-|.|.....+.+  .     ...+.++|+||
T Consensus        13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT   92 (709)
T 4fn5_A           13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT   92 (709)
T ss_dssp             EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence            3579999999999999999987211        00  0010      11122222222222  1     23578999999


Q ss_pred             CCccccCcccccccccCcEEEEEEeCCChhhhhh
Q psy125          281 AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       281 ~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      ||.-.|..-....++-+||+|+|+|+.+.-.-+.
T Consensus        93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT  126 (709)
T 4fn5_A           93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQS  126 (709)
T ss_dssp             CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHH
T ss_pred             CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhH
Confidence            9999999888889999999999999987554443

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.69  E-value=1.2e-05  Score=72.83  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=19.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~  245 (385)
                      ...+.++|.+|+||||+++.+.
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALG   76 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999976

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.68  E-value=0.00018  Score=67.23  Aligned_cols=86  Identities=15%  Similarity=0.045  Sum_probs=49.5

Q ss_pred             eeEEEEEEeCCCcccccc-chh-----hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCC-C-EEEEEeCCCCcc
Q psy125           56 GAIRFNVWDTAGQEKFGG-LRD-----GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENI-P-IVLCGNKVDIKD  127 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~-~~~-----~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~-~-~ilv~nK~Dl~~  127 (385)
                      ..+.+.++||||...... ...     ..+..+|.+++|+|+....   ........+   .... + ..+++||.|...
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~---~~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF---KEAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH---HTTSCSCEEEEEECSSSCS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH---hhcccCCeEEEEeCCCCcc
Confidence            346788999999754211 111     1123689999999986543   222222222   2345 5 788999999754


Q ss_pred             hhhhHHHHHHHHhcCCeEEEEc
Q psy125          128 RKVKAKSIVFHRKKNLQYYDIS  149 (385)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~S  149 (385)
                      ..  .....+....+.++..++
T Consensus       253 ~~--g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          253 KG--GGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             TT--HHHHHHHHHSSCCEEEEC
T ss_pred             ch--HHHHHHHHHHCCCEEEee
Confidence            32  122335555667776664

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.66  E-value=5.1e-06  Score=78.38  Aligned_cols=45  Identities=13%  Similarity=0.037  Sum_probs=37.1

Q ss_pred             CCCChHHHHHHHHHH--HhcCCCc----ccccCCCCCC-CCCCCChhhhhhhHHhHHH
Q psy125          152 SNYNFEKPFLWLARK--LIGDPNL----EFVAMPALLP-PEVTMDPQWQSRIEQDLKE  202 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~--l~~~~~~----~~~~~~~~~e-p~~~~d~~~~~~~~~~l~~  202 (385)
                      +.+|++.++..++++  +..+|++    ++     +|| |+.++|+. ...+.+.+++
T Consensus       235 ~LSgGq~qrlalAra~rL~~~p~i~~sGLl-----LDEpPts~LD~~-~~~l~~l~~~  286 (460)
T 2npi_A          235 DLYLECISQLGQVVGQRLHLDPQVRRSGCI-----VDTPSISQLDEN-LAELHHIIEK  286 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHSCEE-----EECCCGGGSCSS-CHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCcccCcceEE-----EeCCcccccChh-HHHHHHHHHH
Confidence            345899999999999  9999999    99     999 99999998 5555555444

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.64  E-value=0.00034  Score=65.31  Aligned_cols=47  Identities=9%  Similarity=-0.062  Sum_probs=44.1

Q ss_pred             CCChHHHHHHHHHHHhcCC--CcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          153 NYNFEKPFLWLARKLIGDP--NLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       153 ~~gi~~l~~~i~~~l~~~~--~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      .+|+++++..|++++..+|  .+++     +|||++++|+..+..+.+.|++..
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~Ll-----LDEpt~~LD~~~~~~l~~~L~~l~  344 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVV-----FDEVDAGIGGAAAIAVAEQLSRLA  344 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEE-----ESSTTTTCCHHHHHHHHHHHHHHT
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEE-----EECCCCCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999  9999     999999999999999999998764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.60  E-value=4.6e-05  Score=67.93  Aligned_cols=53  Identities=15%  Similarity=0.033  Sum_probs=47.0

Q ss_pred             ccccCcccccccccCcEEEEEEeCCChh-hhhh----------------------------------------------h
Q psy125          283 QEKFGGLRDGYYIQGQCAIIMFDVTSRI-TYKN----------------------------------------------Y  315 (385)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~ilv~d~~~~~-s~~~----------------------------------------------~  315 (385)
                      ++++..+...+++++|++++|||++++. +|+.                                              +
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~  145 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDV  145 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeE
Confidence            7889999999999999999999999986 7763                                              6


Q ss_pred             heeccccCCCchHHHHHHHH
Q psy125          316 YDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       316 ~e~Sak~~~~v~~~f~~l~~  335 (385)
                      +++||++|.||+++|..+..
T Consensus       146 ~~~SA~~g~gi~~L~~~l~G  165 (302)
T 2yv5_A          146 LKVSAKTGEGIDELVDYLEG  165 (302)
T ss_dssp             EECCTTTCTTHHHHHHHTTT
T ss_pred             EEEECCCCCCHHHHHhhccC
Confidence            89999999999999987643

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.57  E-value=0.00016  Score=70.78  Aligned_cols=23  Identities=17%  Similarity=0.274  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTG   32 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~   32 (385)
                      ..|+|+|++|||||||++.|.+-
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~Gl   68 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSGV   68 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHSC
T ss_pred             CeEEEECCCCChHHHHHHHHhCC
Confidence            36999999999999999997764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.54  E-value=0.00038  Score=64.76  Aligned_cols=91  Identities=11%  Similarity=0.013  Sum_probs=52.2

Q ss_pred             eEEEEEEeCCCccc--ccc-ch---hh--hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcch
Q psy125           57 AIRFNVWDTAGQEK--FGG-LR---DG--YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR  128 (385)
Q Consensus        57 ~~~~~i~Dt~g~~~--~~~-~~---~~--~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~  128 (385)
                      ...+.++||+|...  ... ..   ..  ....++.+++|+|+......   ......+...  ..+..+++||.|....
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~--~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA--SPIGSVIITKMDGTAK  253 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc--cCCcEEEEeccccccc
Confidence            45678999999643  111 11   11  12356899999998764332   2233333321  2356789999997543


Q ss_pred             hhhHHHHHHHHhcCCeEEEEcCCCCCCh
Q psy125          129 KVKAKSIVFHRKKNLQYYDISAKSNYNF  156 (385)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (385)
                      -  -.........+.++..++.  |.++
T Consensus       254 ~--G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          254 G--GGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             H--HHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             c--hHHHHHHHHHCCCEEEEEC--CCCh
Confidence            2  2233344556788877775  5554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.52  E-value=7.4e-05  Score=66.49  Aligned_cols=30  Identities=20%  Similarity=0.072  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhcCCC--cccccCCCCCCCCCCCChhhh
Q psy125          158 KPFLWLARKLIGDPN--LEFVAMPALLPPEVTMDPQWQ  193 (385)
Q Consensus       158 ~l~~~i~~~l~~~~~--~~~~~~~~~~ep~~~~d~~~~  193 (385)
                      +++..+++++...|.  +++     +| |++++|+..+
T Consensus       207 kqr~~iaral~~~P~e~lLv-----LD-ptsglD~~~~  238 (302)
T 3b9q_A          207 ACKKAVGKIVSGAPNEILLV-----LD-GNTGLNMLPQ  238 (302)
T ss_dssp             HHHHHHHTTSTTCCSEEEEE-----EE-GGGGGGGHHH
T ss_pred             HHHHHHHHhhccCCCeeEEE-----Ee-CCCCcCHHHH
Confidence            678888999999999  988     99 9999987644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	385
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	2e-36
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	4e-26
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-36
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-19
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-36
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	4e-26
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-35
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-25
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	5e-35
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-24
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-34
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	5e-24
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-33
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	8e-20
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-33
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	2e-18
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-32
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	6e-20
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-32
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-21
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-31
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	3e-17
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-31
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-22
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-31
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-15
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	6e-31
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-20
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-30
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	9e-20
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	2e-30
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	6e-17
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	8e-30
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-18
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-28
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-18
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-28
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-12
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-28
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	9e-14
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-28
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-19
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	3e-27
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	7e-14
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	3e-27
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	9e-17
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	8e-26
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-15
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-25
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	3e-14
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	4e-25
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	7e-14
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-24
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	7e-12
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	1e-24
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	3e-13
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	2e-24
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-14
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-24
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-12
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-24
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	3e-09
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-24
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	6e-12
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	8e-22
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	8e-09
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-22
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-10
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-21
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-11
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	8e-21
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-10
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-20
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-09
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	9e-19
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	2e-09
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-18
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	4e-08
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-18
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	2e-06
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-18
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-06
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	5e-18
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	3e-08
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-18
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-08
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	3e-17
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-08
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-16
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	7e-08
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-16
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-06
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-15
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	3e-05
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-15
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-06
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-15
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	4e-06
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	9e-15
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-07
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	1e-13
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-06
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	4e-13
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	7e-09
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	3e-12
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-07
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-12
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-10
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-09
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-05
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	3e-09
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	2e-05
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	2e-08
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	5e-06
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	3e-05
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	5e-05
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	7e-05
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	1e-04
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	2e-04
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	2e-04
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	0.002

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  128 bits (322), Expect = 2e-36
 Identities = 43/160 (26%), Positives = 80/160 (50%), Gaps = 2/160 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+++D+T   T+ N+   +        +   ++L GNK D++ R
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 129 KVKAKSIVFHRKK-NLQYYDISAKSNYNFEKPFLWLARKL 167
            V A       K+  + + + SAK++ N  + F  LA+ +
Sbjct: 123 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (251), Expect = 4e-26
 Identities = 34/160 (21%), Positives = 62/160 (38%), Gaps = 47/160 (29%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+GD G GK+  + R +  +F   ++ T+G++        N   ++  +WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           +F  +   YY      I+++D+T   T+ N                              
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 315 -----------------YYDISAKSNYNFEKPFLWLARKL 337
                            + + SAK++ N  + F  LA+ +
Sbjct: 123 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 3e-36
 Identities = 162/167 (97%), Positives = 164/167 (98%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           KFGGLRDGYYIQ QCAIIMFDVTSR+TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

Query: 130 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 176
           VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV
Sbjct: 124 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 170

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.8 bits (203), Expect = 2e-19
 Identities = 117/167 (70%), Positives = 119/167 (71%), Gaps = 45/167 (26%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG I+FNVWDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           KFGGLRDGYYIQ QCAIIMFDVTSR+TYKN                              
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

Query: 315 ---------------YYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 346
                          YYDISAKSNYNFEKPFLWLARKLIGDPNLEFV
Sbjct: 124 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 170

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 3e-36
 Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 3/170 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           + + K +++G+ G GK++ + R     F+ +  AT+GV+        +    +  +WDTA
Sbjct: 5   LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTA 64

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVD 124
           GQE+F  L   YY   Q  I+++DVT R T+  + NW  +L   C   +I  +L GNK+D
Sbjct: 65  GQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID 124

Query: 125 IKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNL 173
            ++R+V + + + F RK ++ + + SAK+    +  F  L  K+I  P L
Sbjct: 125 KENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 174

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 4e-26
 Identities = 41/180 (22%), Positives = 68/180 (37%), Gaps = 54/180 (30%)

Query: 212 DEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 271
           DED++       + K +++G+ G GK++ + R     F+ +  AT+GV+        +  
Sbjct: 1   DEDVL------TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGN 54

Query: 272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------- 314
             +  +WDTAGQE+F  L   YY   Q  I+++DVT R T+                   
Sbjct: 55  KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDI 114

Query: 315 -------------------------------YYDISAKSNYNFEKPFLWLARKLIGDPNL 343
                                          + + SAK+    +  F  L  K+I  P L
Sbjct: 115 VNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 174

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  126 bits (318), Expect = 1e-35
 Identities = 52/164 (31%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+G+ G GKT  V+R   G F     AT+GV+        N   ++  +WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDR 128
           +F  +   YY      I+ +D+T   +++ +P             +  VL GNK+D+ +R
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 129 KVKAKSIVFH--RKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 170
           +  ++         +++ Y + SAK + N EK FL LA +LI +
Sbjct: 126 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.1 bits (246), Expect = 2e-25
 Identities = 44/164 (26%), Positives = 64/164 (39%), Gaps = 48/164 (29%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+G+ G GKT  V+R   G F     AT+GV+        N   ++  +WDTAGQE
Sbjct: 6   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           +F  +   YY      I+ +D+T   +++                               
Sbjct: 66  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 125

Query: 315 ------------------YYDISAKSNYNFEKPFLWLARKLIGD 340
                             Y + SAK + N EK FL LA +LI +
Sbjct: 126 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  124 bits (313), Expect = 5e-35
 Identities = 46/161 (28%), Positives = 85/161 (52%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GD G GKT  + R     F   +++T+G++        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           +F  +   YY      ++++D+T+  ++ N+ NW R++      ++  ++ GNK D+ D+
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +   K +         +++ + SAK+N N E  F  LAR +
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.1 bits (241), Expect = 1e-24
 Identities = 37/161 (22%), Positives = 63/161 (39%), Gaps = 48/161 (29%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GD G GKT  + R     F   +++T+G++        +   I+  +WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           +F  +   YY      ++++D+T+  ++ N                              
Sbjct: 67  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126

Query: 315 ------------------YYDISAKSNYNFEKPFLWLARKL 337
                             + + SAK+N N E  F  LAR +
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  124 bits (311), Expect = 2e-34
 Identities = 46/162 (28%), Positives = 83/162 (51%), Gaps = 3/162 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++  +WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           +F  +   YY      II++DVT + ++  V  W +++ R     +  +L GNK D+KD+
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 126

Query: 129 KVKAKSIVFHRKK--NLQYYDISAKSNYNFEKPFLWLARKLI 168
           +V    +         + + + SA  + N E  FL +AR++ 
Sbjct: 127 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 168

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 96.1 bits (238), Expect = 5e-24
 Identities = 27/93 (29%), Positives = 48/93 (51%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+G+ G GK+  + R     +   Y++T+GV+        +   ++  +WDTAGQE
Sbjct: 7   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           +F  +   YY      II++DVT + ++     
Sbjct: 67  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM 99

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 1e-33
 Identities = 47/163 (28%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     IR  +WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDR 128
           +F  L   Y      A++++D+T+  +++    W  D+      ++ I+L GNK D+ D+
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG 169
           +  +        ++ N+ + + SAK+ YN ++ F  +A  L G
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 163

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 8e-20
 Identities = 37/163 (22%), Positives = 64/163 (39%), Gaps = 48/163 (29%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK V +G+   GKT+ + R +   F+  Y AT+G++      +     IR  +WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           +F  L   Y      A++++D+T+  +++                               
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 315 ------------------YYDISAKSNYNFEKPFLWLARKLIG 339
                             + + SAK+ YN ++ F  +A  L G
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 163

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (302), Expect = 2e-33
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 3/162 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDR 128
           ++  +   YY     A++++D+   +TY+NV  W ++L      NI I+L GNK D++  
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 124

Query: 129 K--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +     ++  F  K NL + + SA  + N E+ F  +  ++ 
Sbjct: 125 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 166

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.3 bits (197), Expect = 2e-18
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 48/162 (29%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK VL+GD G GK+  + R    EF  +  +T+GVE        +   I+  +WDTAGQE
Sbjct: 5   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 64

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           ++  +   YY     A++++D+   +TY+N                              
Sbjct: 65  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 124

Query: 315 ------------------YYDISAKSNYNFEKPFLWLARKLI 338
                             + + SA  + N E+ F  +  ++ 
Sbjct: 125 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY 166

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 2e-32
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIK-- 126
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++  
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 127 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                 ++  F  +  L + + SAK+  N E  FL  A+K+
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (207), Expect = 6e-20
 Identities = 38/161 (23%), Positives = 63/161 (39%), Gaps = 48/161 (29%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +    +F      T+GVE    +   +   I+  +WDTAGQE
Sbjct: 5   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 64

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           +F  +   YY     A++++D+T R TY +                              
Sbjct: 65  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 124

Query: 315 ------------------YYDISAKSNYNFEKPFLWLARKL 337
                             + + SAK+  N E  FL  A+K+
Sbjct: 125 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 4e-32
 Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 3/162 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAGQE
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
           +F  +   YY     A++++D+TSR TY  + NW  D      +NI I+LCGNK D+   
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125

Query: 129 KVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +         F ++  L + + SA +  N E+ F+  ARK++
Sbjct: 126 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 167

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 5e-21
 Identities = 37/162 (22%), Positives = 67/162 (41%), Gaps = 48/162 (29%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+ GTGK+  + + +  +F+     T+GVE    + +     ++  +WDTAGQE
Sbjct: 6   FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           +F  +   YY     A++++D+TSR TY                                
Sbjct: 66  RFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 125

Query: 315 ------------------YYDISAKSNYNFEKPFLWLARKLI 338
                             + + SA +  N E+ F+  ARK++
Sbjct: 126 REVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL 167

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 2e-31
 Identities = 47/162 (29%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD G GK+  + +     F+  +  T+GVE    + + +   I+  +WDTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D++ R
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 129 KVKAKSIVFH--RKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +   +       R+  L + + SAK+  N E+ F+  A+++ 
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 165

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (188), Expect = 3e-17
 Identities = 35/162 (21%), Positives = 65/162 (40%), Gaps = 48/162 (29%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD G GK+  + +     F+  +  T+GVE    + + +   I+  +WDTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
            F  +   YY     A++++D+T R T+ +                              
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 315 ------------------YYDISAKSNYNFEKPFLWLARKLI 338
                             + + SAK+  N E+ F+  A+++ 
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIY 165

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  115 bits (288), Expect = 2e-31
 Identities = 37/162 (22%), Positives = 77/162 (47%), Gaps = 3/162 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN---IPIVLCGNKVDIK 126
           ++  +   YY      I+M+D+T+  ++  V +W   +     +   + +V     ++ +
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 127 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
                 +          ++++ SAK N N ++ F  L   + 
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 91.1 bits (225), Expect = 2e-22
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 48/162 (29%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++G+   GKT+F+ R+    F   +V+T+G++      + N   I+  +WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           ++  +   YY      I+M+D+T+  ++                                
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125

Query: 315 ------------------YYDISAKSNYNFEKPFLWLARKLI 338
                             +++ SAK N N ++ F  L   + 
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC 167

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (287), Expect = 3e-31
 Identities = 43/165 (26%), Positives = 85/165 (51%), Gaps = 5/165 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V++G GG GK+    + +TG F +KY  T+  + +      +       + DTA
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           G E+F  +RD Y   GQ  I+++ + ++ +++++      ++RV   E +P++L GNKVD
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119

Query: 125 IKDRKVKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++  +  + S       +    + + SAKS    ++ F  + R++
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (172), Expect = 3e-15
 Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 50/165 (30%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           M  +K V++G GG GK+    + +TG F +KY  T+  + +      +       + DTA
Sbjct: 1   MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTA 59

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN--------------------------- 314
           G E+F  +RD Y   GQ  I+++ + ++ ++++                           
Sbjct: 60  GTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119

Query: 315 ----------------------YYDISAKSNYNFEKPFLWLARKL 337
                                 + + SAKS    ++ F  + R++
Sbjct: 120 LESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 6e-31
 Identities = 46/163 (28%), Positives = 87/163 (53%), Gaps = 4/163 (2%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG 67
           +FK +LVGD G GKT  + R   G F    +++T+G++    V   +   ++  +WDTAG
Sbjct: 6   AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65

Query: 68  QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIK 126
           QE+F  +   YY      ++++DVT++ ++ N+  W  ++      ++ ++L GNKVD  
Sbjct: 66  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 125

Query: 127 DRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
             +V  +       ++  L + + SAK+  N +  F  +A++L
Sbjct: 126 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.2 bits (207), Expect = 5e-20
 Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 49/163 (30%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAG 282
           +FK +LVGD G GKT  + R   G F    +++T+G++    V   +   ++  +WDTAG
Sbjct: 6   AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 65

Query: 283 QEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN---------------------------- 314
           QE+F  +   YY      ++++DVT++ ++ N                            
Sbjct: 66  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 125

Query: 315 --------------------YYDISAKSNYNFEKPFLWLARKL 337
                               + + SAK+  N +  F  +A++L
Sbjct: 126 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (283), Expect = 1e-30
 Identities = 46/164 (28%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +  FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE++  L   YY   Q AI+++D+T+  ++            +   NI I L GNK D+
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

Query: 126 KDRKVKAKSIVFH--RKKNLQYYDISAKSNYNFEKPFLWLARKL 167
            +++              +L + + SAK++ N  + F+ +A+KL
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 9e-20
 Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 48/164 (29%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           +  FK VL+G+   GK++ V R + G+F +   +T+G          +   ++F +WDTA
Sbjct: 4   ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA 63

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN--------------------------- 314
           GQE++  L   YY   Q AI+++D+T+  ++                             
Sbjct: 64  GQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADL 123

Query: 315 ---------------------YYDISAKSNYNFEKPFLWLARKL 337
                                + + SAK++ N  + F+ +A+KL
Sbjct: 124 ANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 2e-30
 Identities = 49/166 (29%), Positives = 87/166 (52%), Gaps = 7/166 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNKVD 124
           +F  LR  +Y    C ++ F V    +++N+ NW ++ +   +     + P V+ GNK+D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 125 IKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           I +R+V  +          +  Y++ SAK   N    F    R+++
Sbjct: 127 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 172

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (185), Expect = 6e-17
 Identities = 38/166 (22%), Positives = 64/166 (38%), Gaps = 52/166 (31%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +L+GDGG GK++ + R++T +F+ +   T+GVE        +   +   +WDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           +F  LR  +Y    C ++ F V    +++N                              
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 315 ----------------------YYDISAKSNYNFEKPFLWLARKLI 338
                                 Y++ SAK   N    F    R+++
Sbjct: 127 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL 172

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 8e-30
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----------HPLVFHTNRGAIR 59
            K + +GD G GKTTF+ R+   +F  K++ T+G++            P         + 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 60  FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIV 117
             +WDTAGQE+F  L   ++      ++MFD+TS+ ++ NV NW   L     CEN  IV
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 118 LCGNKVDIKDRKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           L GNK D+ D++   +        K  + Y++ SA +  N EK    L   ++
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 178

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.7 bits (198), Expect = 2e-18
 Identities = 37/173 (21%), Positives = 63/173 (36%), Gaps = 59/173 (34%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV----------HPLVFHTNRGAIR 274
            K + +GD G GKTTF+ R+   +F  K++ T+G++            P         + 
Sbjct: 6   IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 65

Query: 275 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN-------------------- 314
             +WDTAGQE+F  L   ++      ++MFD+TS+ ++ N                    
Sbjct: 66  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 125

Query: 315 -----------------------------YYDISAKSNYNFEKPFLWLARKLI 338
                                        Y++ SA +  N EK    L   ++
Sbjct: 126 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM 178

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  107 bits (268), Expect = 1e-28
 Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 6/167 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           + S K VL+G+   GK++ V R ++ +F +    T+G          N   ++F +WDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           GQE+F  L   YY   Q A++++DVT   ++            +  ++I I L GNK+D+
Sbjct: 61  GQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDM 120

Query: 126 -----KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                + +  + +      +K L +++ SAK+  N    FL +  K+
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.7 bits (195), Expect = 2e-18
 Identities = 37/167 (22%), Positives = 63/167 (37%), Gaps = 51/167 (30%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           + S K VL+G+   GK++ V R ++ +F +    T+G          N   ++F +WDTA
Sbjct: 1   VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTA 60

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN--------------------------- 314
           GQE+F  L   YY   Q A++++DVT   ++                             
Sbjct: 61  GQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDM 120

Query: 315 ------------------------YYDISAKSNYNFEKPFLWLARKL 337
                                   +++ SAK+  N    FL +  K+
Sbjct: 121 LQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  107 bits (268), Expect = 1e-28
 Identities = 44/165 (26%), Positives = 84/165 (50%), Gaps = 5/165 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +   K ++VG GG GK+    + +  EF + Y  T            +   ++ ++ DTA
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTA 60

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE +  +RD Y+  G+  + +F +T   ++    ++   ++RV   EN+P +L GNK D
Sbjct: 61  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120

Query: 125 IKDRKVKAK--SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++D++  +   +     + N+ Y + SAK+  N +K F  L R++
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 63.0 bits (152), Expect = 2e-12
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 50/165 (30%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           +   K ++VG GG GK+    + +  EF + Y  T            +   ++ ++ DTA
Sbjct: 2   LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTA 60

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN--------------------------- 314
           GQE +  +RD Y+  G+  + +F +T   ++                             
Sbjct: 61  GQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSD 120

Query: 315 ----------------------YYDISAKSNYNFEKPFLWLARKL 337
                                 Y + SAK+  N +K F  L R++
Sbjct: 121 LEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 1e-28
 Identities = 44/164 (26%), Positives = 81/164 (49%), Gaps = 4/164 (2%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V+VG GG GK+    + +   F  +Y  T+       V          ++ DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET-CLLDILDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           GQE++  +RD Y   G+  + +F + +  +++++  +   + RV   +++P+VL GNK D
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119

Query: 125 IKDRKVKAKSIV-FHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +  R V+++      R   + Y + SAK+    E  F  L R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 9e-14
 Identities = 32/164 (19%), Positives = 57/164 (34%), Gaps = 49/164 (29%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           M  +K V+VG GG GK+    + +   F  +Y  T+       V          ++ DTA
Sbjct: 1   MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGET-CLLDILDTA 59

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN--------------------------- 314
           GQE++  +RD Y   G+  + +F + +  ++++                           
Sbjct: 60  GQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD 119

Query: 315 ---------------------YYDISAKSNYNFEKPFLWLARKL 337
                                Y + SAK+    E  F  L R++
Sbjct: 120 LAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (267), Expect = 2e-28
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 3/163 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           SFK VL+G+G  GKT+ V R+   +F  K++ TLG        +     +   +WDTAGQ
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN-VPNWHRDLVRVCENIPIVLCGNKVDIKD 127
           E+F  L   YY     AI+++D+T   +++            +   I + + GNK+D++ 
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 122

Query: 128 RKVKAKSIV--FHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
            +  +      +      ++Y  SAK N   E+ FL L +++I
Sbjct: 123 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.3 bits (202), Expect = 2e-19
 Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 48/163 (29%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           SFK VL+G+G  GKT+ V R+   +F  K++ TLG        +     +   +WDTAGQ
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           E+F  L   YY     AI+++D+T   +++                              
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 122

Query: 315 -------------------YYDISAKSNYNFEKPFLWLARKLI 338
                              +Y  SAK N   E+ FL L +++I
Sbjct: 123 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (258), Expect = 3e-27
 Identities = 48/166 (28%), Positives = 86/166 (51%), Gaps = 6/166 (3%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M  +K V++G GG GK+    + + G F +KY  T+       V    +      + DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQ-CMLEILDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVD 124
           G E+F  +RD Y   GQ   +++ +T++ T+ ++ +    ++RV   E++P++L GNK D
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119

Query: 125 IKDRKVKAKSIVFH---RKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++D +V  K    +   +  N  + + SAKS  N  + F  L R++
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 7e-14
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 51/166 (30%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           M  +K V++G GG GK+    + + G F +KY  T+       V    +      + DTA
Sbjct: 1   MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQ-CMLEILDTA 59

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN--------------------------- 314
           G E+F  +RD Y   GQ   +++ +T++ T+ +                           
Sbjct: 60  GTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCD 119

Query: 315 -----------------------YYDISAKSNYNFEKPFLWLARKL 337
                                  + + SAKS  N  + F  L R++
Sbjct: 120 LEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (258), Expect = 3e-27
 Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 3/164 (1%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +   K  L+GD G GK++ + R +   F+     T+G               +F +WDTA
Sbjct: 2   LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 61

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPIVLCGNKVDI 125
           G E+F  L   YY     AII++D+T   T+  +             +I + + GNK D+
Sbjct: 62  GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 121

Query: 126 --KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                 ++  +  +    +  + + SAK+  N  + F+ ++R++
Sbjct: 122 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.0 bits (183), Expect = 9e-17
 Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 48/164 (29%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           +   K  L+GD G GK++ + R +   F+     T+G               +F +WDTA
Sbjct: 2   LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA 61

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN--------------------------- 314
           G E+F  L   YY     AII++D+T   T+                             
Sbjct: 62  GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 121

Query: 315 ---------------------YYDISAKSNYNFEKPFLWLARKL 337
                                + + SAK+  N  + F+ ++R++
Sbjct: 122 TDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (248), Expect = 8e-26
 Identities = 49/162 (30%), Positives = 85/162 (52%), Gaps = 2/162 (1%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + K V+VG+G  GK++ ++R+  G F K Y  T+GV+        N   +R  +WDTAGQ
Sbjct: 2   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 128
           E+F  +   YY   Q  +++F  T R +++ + +W   +V    +IP  L  NK+D+ D 
Sbjct: 62  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 121

Query: 129 KV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
                 ++    ++  L++Y  S K + N  + F +LA K +
Sbjct: 122 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (172), Expect = 2e-15
 Identities = 39/162 (24%), Positives = 64/162 (39%), Gaps = 47/162 (29%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + K V+VG+G  GK++ ++R+  G F K Y  T+GV+        N   +R  +WDTAGQ
Sbjct: 2   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           E+F  +   YY   Q  +++F  T R +++                              
Sbjct: 62  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 121

Query: 315 ------------------YYDISAKSNYNFEKPFLWLARKLI 338
                             +Y  S K + N  + F +LA K +
Sbjct: 122 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL 163

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 1e-25
 Identities = 44/182 (24%), Positives = 76/182 (41%), Gaps = 17/182 (9%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           M + KCV+VGDG  GKT  +  + T +F  +YV T+       V           ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTA 59

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDI 125
           GQE +  LR   Y Q    ++ F V S  +++NV       +   C   P +L G ++D+
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDL 119

Query: 126 KDRKVKAKSIVFHRK---------------KNLQYYDISAKSNYNFEKPFLWLARKLIGD 170
           +D     + +  +++               K ++Y + SA +    +  F       +  
Sbjct: 120 RDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP 179

Query: 171 PN 172
           P 
Sbjct: 180 PE 181

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (167), Expect = 3e-14
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           M + KCV+VGDG  GKT  +  + T +F  +YV T+       V           ++DTA
Sbjct: 1   MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEP-YTLGLFDTA 59

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           GQE +  LR   Y Q    ++ F V S  +++N
Sbjct: 60  GQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFEN 92

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.6 bits (244), Expect = 4e-25
 Identities = 45/169 (26%), Positives = 83/169 (49%), Gaps = 10/169 (5%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-VEVHPLVFHTNRGAIRFNVWDTAGQ 68
            K +++GD G GKT+ + R++  ++ ++Y AT+G   +   V           VWDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKV 123
           E+F  L   +Y    C ++++DVT+  +++N+ +W  + +        E  P V+ GNK+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 124 DIKDRKVKAKSIVF----HRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           D ++ K                ++  +  SAK+  N +  F  +AR  +
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSAL 171

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.0 bits (162), Expect = 7e-14
 Identities = 29/93 (31%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG-VEVHPLVFHTNRGAIRFNVWDTAGQ 283
            K +++GD G GKT+ + R++  ++ ++Y AT+G   +   V           VWDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
           E+F  L   +Y    C ++++DVT+  +++N  
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIK 95

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 1e-24
 Identities = 44/163 (26%), Positives = 84/163 (51%), Gaps = 5/163 (3%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + K V+VG GG GK+    + +   F   Y  T   + +  +   +    R ++ DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPT-IEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIK 126
           E+FG +R+ Y   G   +++F +  R ++  V      ++RV   ++ P+VL GNK D++
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 127 DRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
            ++   ++++  F    ++ Y++ SAK   N ++ F  L R +
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 7e-12
 Identities = 33/163 (20%), Positives = 58/163 (35%), Gaps = 50/163 (30%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + K V+VG GG GK+    + +   F   Y  T   + +  +   +    R ++ DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPT-IEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           E+FG +R+ Y   G   +++F +  R ++                               
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 315 --------------------YYDISAKSNYNFEKPFLWLARKL 337
                               Y++ SAK   N ++ F  L R +
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 97.0 bits (240), Expect = 1e-24
 Identities = 47/167 (28%), Positives = 85/167 (50%), Gaps = 6/167 (3%)

Query: 6   DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 65
           ++P++K V+VGDGG GK+    +     F   Y      + +      +      +V DT
Sbjct: 1   NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYD-PTIEDSYLKHTEIDNQWAILDVLDT 59

Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKV 123
           AGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ ++RV +  + P++L  NKV
Sbjct: 60  AGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 119

Query: 124 DIKDRK--VKAKSIVFHRKKNLQYYDISAKS-NYNFEKPFLWLARKL 167
           D+   +   + +      K N+ Y + SAK    N +K F  L R +
Sbjct: 120 DLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (157), Expect = 3e-13
 Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDT 280
           ++P++K V+VGDGG GK+    +     F   Y      + +      +      +V DT
Sbjct: 1   NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYD-PTIEDSYLKHTEIDNQWAILDVLDT 59

Query: 281 AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYY 316
           AGQE+F  +R+ Y   G   +I++ VT + ++++  
Sbjct: 60  AGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVD 95

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 97.1 bits (240), Expect = 2e-24
 Identities = 52/166 (31%), Positives = 91/166 (54%), Gaps = 7/166 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV-----CENIPIVLCGNKVD 124
           +F  L   +Y    C +++FDVT+  T+K + +W  + +        EN P V+ GNK+D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 125 IKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +++R+V  K      + K N+ Y++ SAK   N E+ F  +AR  +
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 168

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.7 bits (169), Expect = 1e-14
 Identities = 38/166 (22%), Positives = 65/166 (39%), Gaps = 52/166 (31%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +++GD G GKT+ + +++  +F  +Y AT+G +        +   +   +WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           +F  L   +Y    C +++FDVT+  T+K                               
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 315 ----------------------YYDISAKSNYNFEKPFLWLARKLI 338
                                 Y++ SAK   N E+ F  +AR  +
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL 168

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.6 bits (239), Expect = 2e-24
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           FK +++GD   GKT    R   G F  +  AT+GV+        +   I+  +WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 70  KFGGL-RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 126
           +F       YY      + ++D+T+  ++ ++P W  +  +     +IP +L GNK D++
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122

Query: 127 DRKVKAKSIV--FHRKKNLQYYDISAKS---NYNFEKPFLWLA 164
                   +   F    ++  ++ SAK+   N + E  F+ LA
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.1 bits (152), Expect = 1e-12
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 1/106 (0%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           FK +++GD   GKT    R   G F  +  AT+GV+        +   I+  +WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 285 KFGGL-RDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKP 329
           +F       YY      + ++D+T+  ++ +      +   +    
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN 108

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.2 bits (238), Expect = 3e-24
 Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 17/179 (9%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+       V    +  +   +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP-VNLGLWDTAGQ 63

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV-RVCENIPIVLCGNKVDIKD 127
           E +  LR   Y Q   ++I F + S  +++NV       V   C N PI+L G K+D++D
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 128 RKVKAKSIVFHR---------------KKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 171
            K   + +   +                  ++Y + SA +    +  F    R ++  P
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 3e-09
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 1/91 (1%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + KCV+VGDG  GKT  +  + T  F  +Y+ T+       V    +  +   +WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKP-VNLGLWDTAGQ 63

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           E +  LR   Y Q   ++I F + S  +++N
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFEN 94

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.9 bits (237), Expect = 3e-24
 Identities = 44/162 (27%), Positives = 82/162 (50%), Gaps = 5/162 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           ++ V+VG GG GK+    + +   F   Y  T+           +R   R ++ DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRA-ARLDILDTAGQE 64

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKD 127
           +FG +R+ Y   G+  +++F VT R +++ +  + R ++R    +  P++L GNK D+  
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 128 RK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           ++   + +     R+  + Y + SAK   N ++ F  L R +
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 6e-12
 Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 50/162 (30%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           ++ V+VG GG GK+    + +   F   Y  T+           +R   R ++ DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRA-ARLDILDTAGQE 64

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           +FG +R+ Y   G+  +++F VT R +++                               
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 315 -------------------YYDISAKSNYNFEKPFLWLARKL 337
                              Y + SAK   N ++ F  L R +
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (220), Expect = 8e-22
 Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 6/161 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           ++  + G GG GK++ V R + G F + Y+ T+      ++           + DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSI-CTLQITDTTGSH 61

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV---CENIPIVLCGNK--VD 124
           +F  ++     +G   I+++ +TSR + + +   +  +  +    E+IPI+L GNK    
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 125 IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
                  +++    R     + + SAK N+N ++ F  L  
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 162

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 8e-09
 Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 51/161 (31%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           ++  + G GG GK++ V R + G F + Y+ T+      ++           + DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSI-CTLQITDTTGSH 61

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
           +F  ++     +G   I+++ +TSR + +                               
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 315 --------------------YYDISAKSNYNFEKPFLWLAR 335
                               + + SAK N+N ++ F  L  
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 162

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 88.9 bits (219), Expect = 9e-22
 Identities = 35/164 (21%), Positives = 58/164 (35%), Gaps = 12/164 (7%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           + ++VG    GKTT + +   GE       T    +   V       I F VWD  GQ+K
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDR 128
              L   Y+   Q  I + D   R            ++      +  +++  NK D+ + 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 129 KVKAK-----SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
              A+      +   R +N       A S     +   WL+ +L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 4e-10
 Identities = 29/164 (17%), Positives = 42/164 (25%), Gaps = 57/164 (34%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           + ++VG    GKTT + +   GE       T    +   V       I F VWD  GQ+K
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIV-----TTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD---------------------------- 317
              L   Y+   Q  I + D   R       +                            
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 318 ------------------------ISAKSNYNFEKPFLWLARKL 337
                                     A S     +   WL+ +L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.5 bits (218), Expect = 2e-21
 Identities = 41/184 (22%), Positives = 72/184 (39%), Gaps = 17/184 (9%)

Query: 1   MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 60
           MA        KCV+VGDG  GKT  +  +    F ++YV T+       V    +     
Sbjct: 1   MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGK-QYLL 59

Query: 61  NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLC 119
            ++DTAGQE +  LR   Y      +I F V +  +++NV       ++    N+P +L 
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 119

Query: 120 GNKVDIKDRKVKAKSIVFHRK---------------KNLQYYDISAKSNYNFEKPFLWLA 164
           G ++D++D       +   ++                   Y + SA +    +  F    
Sbjct: 120 GTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAI 179

Query: 165 RKLI 168
             ++
Sbjct: 180 IAIL 183

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 3e-11
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 3/124 (2%)

Query: 216 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRF 275
           MA        KCV+VGDG  GKT  +  +    F ++YV T+       V    +     
Sbjct: 1   MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGK-QYLL 59

Query: 276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD--ISAKSNYNFEKPFLWL 333
            ++DTAGQE +  LR   Y      +I F V +  +++N  +  +     Y    PFL +
Sbjct: 60  GLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLI 119

Query: 334 ARKL 337
             ++
Sbjct: 120 GTQI 123

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.6 bits (213), Expect = 8e-21
 Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 17/175 (9%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDR 128
            +  LR   Y      ++ F + S  + +N+P      V+  C N+PI+L GNK D+++ 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 129 KVKAKSIVFHRK---------------KNLQYYDISAKSNYNFEKPFLWLARKLI 168
           +   + +   ++                   Y + SAK+     + F    R  +
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL 176

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 2e-10
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 1/93 (1%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K V+VGDG  GKT  +  +   +F + YV T+  E +      +   +   +WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
            +  LR   Y      ++ F + S  + +N  +
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPE 94

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 8e-20
 Identities = 35/165 (21%), Positives = 56/165 (33%), Gaps = 12/165 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G    GKTT + +   G+            V   V       ++FNVWD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTI-----PTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKD 127
           K   L   YY   Q  I + D   R            ++   E  +  I++  NK D+ D
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 128 RKVKAK-----SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                +      +   R +N       A S     +   WL    
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT + +   G+            V   V       ++FNVWD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQSVTTI-----PTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
           K   L   YY   Q  I + D   R        
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQ 100

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.2 bits (199), Expect = 9e-19
 Identities = 39/175 (22%), Positives = 63/175 (36%), Gaps = 18/175 (10%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K V+VGD   GKT  +       F + YV T   E +   F  +   I  ++WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPT-VFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRK 129
           +  +R   Y      +I FD++   T  +V    +      C N  ++L G K D++   
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 130 VKAKSIVFHRKK---------------NLQYYDISAKSNYNF-EKPFLWLARKLI 168
                +  HR+                   Y + SA  + N     F       +
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACV 177

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (129), Expect = 2e-09
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 1/89 (1%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K V+VGD   GKT  +       F + YV T   E +   F  +   I  ++WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPT-VFENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
           +  +R   Y      +I FD++   T  +
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDS 91

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 1e-18
 Identities = 27/171 (15%), Positives = 59/171 (34%), Gaps = 16/171 (9%)

Query: 7   MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 66
           +P  +  ++GD  +GK++ + R LTG ++             ++       +       A
Sbjct: 3   IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGA 62

Query: 67  GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC----ENIPIVLCGNK 122
              K       +       I +F +    +++ V   H  L  +       + + L G +
Sbjct: 63  PDAK-------FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQ 115

Query: 123 VDIKDRKVKAKSI-----VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI 168
             I     +         +    K   YY+  A    N ++ F  +A+K++
Sbjct: 116 DRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 166

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 4e-08
 Identities = 21/164 (12%), Positives = 42/164 (25%), Gaps = 47/164 (28%)

Query: 222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTA 281
           +P  +  ++GD  +GK++ + R LTG ++             ++       +       A
Sbjct: 3   IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGA 62

Query: 282 GQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN--------------------------- 314
              KF G  D                    +                             
Sbjct: 63  PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASS 122

Query: 315 --------------------YYDISAKSNYNFEKPFLWLARKLI 338
                               YY+  A    N ++ F  +A+K++
Sbjct: 123 PRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 166

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 79.7 bits (195), Expect = 2e-18
 Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 11/163 (6%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            +  LVG   +GKTTFV    +G+F +  + T+G  +  +        +   +WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN----VTIKLWDIGGQP 58

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKD 127
           +F  + + Y       + M D   +   +   N   +L+     + IP+++ GNK D+  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 128 -----RKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
                  ++  ++   + + +  Y IS K   N +    WL +
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 161

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 2e-06
 Identities = 25/115 (21%), Positives = 43/115 (37%), Gaps = 7/115 (6%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            +  LVG   +GKTTFV    +G+F +  + T+G  +  +        +   +WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGN----VTIKLWDIGGQP 58

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNF---EKPFLWLARK 336
           +F  + + Y       + M D   +   +   +              P L L  K
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNK 113

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 79.6 bits (195), Expect = 3e-18
 Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 12/166 (7%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
             + +L+G    GKTT +K+  + +                +        + NVWD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQSQGFKLNVWDIGGQ 70

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIK 126
            K       Y+      I + D   R  ++       +L+       +P+++  NK D+ 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 127 DRKVKAK-----SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                ++     ++   R +  Q    SA +    +    W+ + +
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 44.6 bits (104), Expect = 4e-06
 Identities = 22/116 (18%), Positives = 37/116 (31%), Gaps = 8/116 (6%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
             + +L+G    GKTT +K+  + +                +        + NVWD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHIT-----PTQGFNIKSVQSQGFKLNVWDIGGQ 70

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFE---KPFLWLARK 336
            K       Y+      I + D   R  ++       +     +    P L  A K
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANK 126

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 79.2 bits (194), Expect = 5e-18
 Identities = 32/165 (19%), Positives = 58/165 (35%), Gaps = 12/165 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G  G GKTT + R   GE       T+G  V       +   ++ NVWD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNVE----TLSYKNLKLNVWDLGGQT 72

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKD 127
                   YY      I + D T +            +++    ++  +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 128 RK-----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                   K  ++V  + ++      SA       +   WL   +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 50.7 bits (120), Expect = 3e-08
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G  G GKTT + R   GE       T+G  V       +   ++ NVWD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTKP-TIGFNVE----TLSYKNLKLNVWDLGGQT 72

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
                   YY      I + D T +        
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASK 105

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 78.2 bits (191), Expect = 7e-18
 Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 12/165 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G    GKTT +K+     F  + V T+   +   +        + N+WD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKK-----FNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKD 127
                   Y+      I + D   R   ++     + L+         +++  NK D+  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 128 RKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                   +A  +   R  + +    SA +  +      WL   +
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 49.3 bits (116), Expect = 7e-08
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G    GKTT +K+     F  + V T+   +   +        + N+WD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKK-----FNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN 314
                   Y+      I + D   R   ++
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQD 87

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 3e-17
 Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 7/164 (4%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K  + G  G GK+  V R LT  F  +Y  TL           +   +   + DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQE 61

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNKVDIKD 127
                R+G+   G+  ++++D+T R +++ V      L  + +  N+ ++L GNK D+  
Sbjct: 62  DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 128 RKV--KAKSIVFHRKKNLQYYDISAKSNY-NFEKPFLWLARKLI 168
            +     +      +    +Y+ SA +   N  + F  L R++ 
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR 164

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 1e-08
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K  + G  G GK+  V R LT  F  +Y  TL           +   +   + DTAGQE
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQE 61

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
                R+G+   G+  ++++D+T R +++    
Sbjct: 62  DTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLP 93

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (183), Expect = 1e-16
 Identities = 36/162 (22%), Positives = 62/162 (38%), Gaps = 5/162 (3%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           S K  ++G    GK++   + + G+F   Y  T+      L+   N       + DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQ 62

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVT--SRITYKNVPNWHRDLVRVCENIPIVLCGNKVDI- 125
           +++      Y I     I+++ VT         V +     +     IPI+L GNK D+ 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 126 -KDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166
            +      +        N  + + SAK N      F  +  +
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 7e-08
 Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 50/162 (30%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           S K  ++G    GK++   + + G+F   Y  T+      L+   N       + DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITV-NGQEYHLQLVDTAGQ 62

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           +++      Y I     I+++ VTS  +++                              
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 315 --------------------YYDISAKSNYNFEKPFLWLARK 336
                               + + SAK N      F  +  +
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 74.3 bits (181), Expect = 2e-16
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 12/165 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K ++VG    GKTT + +    E            +   V        RF +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCEN--IPIVLCGNKVDIKD 127
                 + YY   +  I++ D T R            ++   +     +++  NK D+K+
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 128 RKV-----KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
                   +   +   +          A +     +   W+  +L
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 25/165 (15%), Positives = 39/165 (23%), Gaps = 57/165 (34%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K ++VG    GKTT + +    E            +   V        RF +WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQFSMNEV-----VHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
                 + YY   +  I++ D T R                                   
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 315 ----------------------YYDISAKSNYNFEKPFLWLARKL 337
                                      A +     +   W+  +L
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (174), Expect = 2e-15
 Identities = 26/164 (15%), Positives = 57/164 (34%), Gaps = 6/164 (3%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIR----FNVWDT 65
           ++ VL+G+ G GK+T                 +  E          G        ++W+ 
Sbjct: 4   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63

Query: 66  AGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDI 125
            G+ ++              +      +     +         R  E+IPI+L GNK D+
Sbjct: 64  KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123

Query: 126 KDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
              +    ++        + ++ + SA   +N ++ F  + R++
Sbjct: 124 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 17/164 (10%), Positives = 41/164 (25%), Gaps = 51/164 (31%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEF-EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           ++ VL+G+ G GK+T                  LG + +      +  +    + D    
Sbjct: 4   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKN----------------------------- 314
           +        + +Q   A ++    +                                   
Sbjct: 64  KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123

Query: 315 ---------------------YYDISAKSNYNFEKPFLWLARKL 337
                                + + SA   +N ++ F  + R++
Sbjct: 124 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 71.3 bits (173), Expect = 2e-15
 Identities = 31/165 (18%), Positives = 55/165 (33%), Gaps = 12/165 (7%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            + +++G  G GKTT + R   GE       T    +   V       ++F VWD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKD 127
                   YY      I + D   R       +    ++         +V+  NK D++ 
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 128 RKVKAK-----SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
               ++      +   + +  Q +  SA      ++   WL   L
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 23/109 (21%), Positives = 32/109 (29%), Gaps = 5/109 (4%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            + +++G  G GKTT + R   GE       T    +   V       ++F VWD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWL 333
                   YY      I + D   R                 E     L
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAIL 109

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.3 bits (173), Expect = 2e-15
 Identities = 22/160 (13%), Positives = 52/160 (32%), Gaps = 2/160 (1%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
           +K +L+G  G GK+   +     E   +  A        +V      ++           
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 129
           ++              +            +         R  +++PI+L GNK D+   +
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121

Query: 130 VKAKS--IVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
             +           + ++ + SA  ++N +  F  + R++
Sbjct: 122 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 4e-06
 Identities = 20/162 (12%), Positives = 45/162 (27%), Gaps = 51/162 (31%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
           +K +L+G  G GK+   +     E   +         +      +       V+D   Q+
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEA--EAAGHTYDRSIVVDGEEASLMVYDIWEQD 59

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKN------------------------------ 314
               L       G   +I++ VT + +++                               
Sbjct: 60  GGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVR 119

Query: 315 -------------------YYDISAKSNYNFEKPFLWLARKL 337
                              + + SA  ++N +  F  + R++
Sbjct: 120 SREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.3 bits (168), Expect = 9e-15
 Identities = 30/169 (17%), Positives = 58/169 (34%), Gaps = 19/169 (11%)

Query: 11  KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 70
           K + +G    GKTT +             ATL    HP       G I+F  +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 71  FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPIVLCGNK------ 122
              L   Y+ +    + + D      +         L  + E  ++P V+ GNK      
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 123 ---VDIKDRKVKAKSIV---FHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
               +++       +        ++ ++ +  S      + + F WL++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (114), Expect = 2e-07
 Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 5/102 (4%)

Query: 226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK 285
           K + +G    GKTT +             ATL    HP       G I+F  +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 286 FGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFE 327
              L   Y+ +    + + D      +              E
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE 98

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 66.6 bits (161), Expect = 1e-13
 Identities = 28/178 (15%), Positives = 56/178 (31%), Gaps = 24/178 (13%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + K V +G    GKTT +         +         +HP         + F  +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTIAGMTFTTFDLGGH 67

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIK 126
            +   +   Y       + + D                L+      N+PI++ GNK+D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 127 DRKVKAK-----------------SIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           +   + +                 S+     + L+ +  S      + + F W+A+ +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 14/94 (14%), Positives = 26/94 (27%), Gaps = 5/94 (5%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + K V +G    GKTT +         +         +HP         + F  +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTIAGMTFTTFDLGGH 67

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
            +   +   Y       + + D           +
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKE 101

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.9 bits (160), Expect = 4e-13
 Identities = 28/139 (20%), Positives = 46/139 (33%), Gaps = 20/139 (14%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + + +L+G G +GK+T VK+          V T G+             + F+++D  GQ
Sbjct: 6   THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQVDK----VNFHMFDVGGQ 57

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV------------RVCENIPI 116
                     +      I +   +S        N    L             R    I +
Sbjct: 58  RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 117

Query: 117 VLCGNKVDIKDRKVKAKSI 135
           +L  NK D+   KV A   
Sbjct: 118 ILFLNKQDLLAEKVLAGKS 136

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.6 bits (128), Expect = 7e-09
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 8/94 (8%)

Query: 224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 283
           + + +L+G G +GK+T VK+          V T G+             + F+++D  GQ
Sbjct: 6   THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQVDK----VNFHMFDVGGQ 57

Query: 284 EKFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYD 317
                     +      I +   +S        +
Sbjct: 58  RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDN 91

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.0 bits (152), Expect = 3e-12
 Identities = 28/168 (16%), Positives = 49/168 (29%), Gaps = 19/168 (11%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+G G +GK+TF+K+            T G+  +            F + D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIKNV----PFKMVDVGGQR 55

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE------------NIPIV 117
                    +      + +   +              L                 N+ I+
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 118 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 165
           L  NK D+ + KV+  SI  +  +                + F    R
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRR 163

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (117), Expect = 1e-07
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 7/88 (7%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+G G +GK+TF+K+            T G+  +            F + D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIKNV----PFKMVDVGGQR 55

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITY 312
                    +      + +   +     
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQV 83

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.6 bits (151), Expect = 3e-12
 Identities = 27/169 (15%), Positives = 56/169 (33%), Gaps = 18/169 (10%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+G G +GK+TF+K+          V T G+  +P    +      F + D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSV----IFRMVDVGGQR 56

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLV------------RVCENIPIV 117
                    +      + +  ++         +    +                +N  ++
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 118 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166
           L  NK D+ + K+    +V +  +       +  +     K F+ L   
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD 165

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.6 bits (138), Expect = 2e-10
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 9/109 (8%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+G G +GK+TF+K+          V T G+  +P    +      F + D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSV----IFRMVDVGGQR 56

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWL 333
                    +      + +  ++         D     N   E   L+ 
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESD---NENRMEESKALFR 102

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.0 bits (131), Expect = 2e-09
 Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 22/169 (13%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K +L+G G +GK+T VK+      +  + A  G+      F        F ++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQ-----MKIIHEAGTGIVETHFTFKDL----HFKMFDVGGQR 53

Query: 70  KFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE------------NIPIV 117
                    +      I    ++              +    +            +  I+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 118 LCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK 166
           L  NK D+ + K+K   +     +          + Y  +  F  L ++
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY-IQCQFEDLNKR 161

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 14/145 (9%)

Query: 225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 284
            K +L+G G +GK+T VK+      +  + A  G+      F        F ++D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQ-----MKIIHEAGTGIVETHFTFKDL----HFKMFDVGGQR 53

Query: 285 KFGGLRDGYYIQGQCAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLE 344
                    +      I    ++                 N     + L   +  +    
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLA-----EDEEMNRMHESMKLFDSICNNKWFT 108

Query: 345 FVAMPALLPPEVTMDPQWQSRIEQD 369
             ++   L  +   + + +      
Sbjct: 109 DTSIILFLNKKDLFEEKIKKSPLTI 133

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (129), Expect = 3e-09
 Identities = 25/162 (15%), Positives = 52/162 (32%), Gaps = 16/162 (9%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           + VG   +GKT    R LTG++ +    ++         + NRG     +     +    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 73  GLRDGYYIQGQCAIIMFDVTSRI-----TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKD 127
            L D +    +  + + D  +         + +     D + +  +  +++  NK DI  
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM 122

Query: 128 RKVKAK----------SIVFHRKKNLQYYDISAKSNYNFEKP 159
            K              ++   R       D S+ +     K 
Sbjct: 123 AKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKK 164

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 228 VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 287
           + VG   +GKT    R LTG++ +    ++         + NRG     +     +    
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62

Query: 288 GLRDGYYIQGQCAIIMFDVTSR 309
            L D +    +  + + D  + 
Sbjct: 63  QLLDRFKSSARAVVFVVDSAAF 84

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 51.3 bits (121), Expect = 2e-08
 Identities = 30/166 (18%), Positives = 53/166 (31%), Gaps = 14/166 (8%)

Query: 10  FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE 69
            K V+ G    GK++ +   L G          G     L  H +   +  ++ DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNA-LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 70  KFGGLRDGYYI--------QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGN 121
           +     +   I        Q    + M D T+         W   + R+   +PI +  N
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 122 KVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           K DI    +                 +SA++    +     L + +
Sbjct: 121 KADITGETLG-----MSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (104), Expect = 5e-06
 Identities = 22/166 (13%), Positives = 45/166 (27%), Gaps = 26/166 (15%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           ++ G   +GKT+ +    T            V     +   +       + D  G  K  
Sbjct: 7   IIAGPQNSGKTSLLTLLTTDSVRP------TVVSQEPLSAADYDGSGVTLVDFPGHVKLR 60

Query: 73  GLRDGYYIQGQCAIIMF-----DVTSRITYKNVPNWHRDLVRVCE-----NIPIVLCGNK 122
                Y       +                     +  D++ + E      I I++  NK
Sbjct: 61  YKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNK 120

Query: 123 VDIKDRKVKAK----------SIVFHRKKNLQYYDISAKSNYNFEK 158
            ++   +  +K           ++  RKK+L   +         E 
Sbjct: 121 SELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAEN 166

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 33/213 (15%), Positives = 63/213 (29%), Gaps = 25/213 (11%)

Query: 4   EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP--LVFHTNRGAIRFN 61
           E+D       + G+ G+GK++F+        E++  A  GV         + +       
Sbjct: 51  EIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVV 110

Query: 62  VWDTAGQEKFGGLRDGY---YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCE--NIPI 116
            WD  G        D Y       +    +    +R           D+ +         
Sbjct: 111 FWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFK-----KNDIDIAKAISMMKKEF 165

Query: 117 VLCGNKVD-IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 175
                KVD     +   +   F ++K LQ  DI       F +         I +P +  
Sbjct: 166 YFVRTKVDSDITNEADGEPQTFDKEKVLQ--DIRLNCVNTFRE-------NGIAEPPIFL 216

Query: 176 VAMPALLPPEVTMDPQWQSRIEQDLKEAQETAL 208
           ++   +   +    P    ++  DL   +    
Sbjct: 217 LSNKNVCHYDF---PVLMDKLISDLPIYKRHNF 246

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (99), Expect = 5e-05
 Identities = 31/196 (15%), Positives = 58/196 (29%), Gaps = 15/196 (7%)

Query: 191 QWQSRIEQDLKEAQETALPDDD-----EDLMAA--EMDMPSFKCVLVGDGGTGKTTFVKR 243
             +  I Q++    E  +   +       +  A  E+D       + G+ G+GK++F+  
Sbjct: 16  TGRKIISQEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINT 75

Query: 244 HLTGEFEKKYVATLGVEVHP--LVFHTNRGAIRFNVWDTAGQEKFGGLRDGY---YIQGQ 298
                 E++  A  GV         + +        WD  G        D Y       +
Sbjct: 76  LRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 135

Query: 299 CAIIMFDVTSRITYKNYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTM 358
               +    +R    +     A S     K F ++  K+  D   E    P     E  +
Sbjct: 136 YDFFIIISATRFKKNDIDIAKAISMMK--KEFYFVRTKVDSDITNEADGEPQTFDKEKVL 193

Query: 359 DPQWQSRIEQDLKEAQ 374
               +       +E  
Sbjct: 194 Q-DIRLNCVNTFRENG 208

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 40.8 bits (94), Expect = 7e-05
 Identities = 30/180 (16%), Positives = 54/180 (30%), Gaps = 15/180 (8%)

Query: 14  LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV-FHTNRGAIRFNVWDTAG----- 67
           LVG    GK++ +   +T     K        + P +         RF + D  G     
Sbjct: 6   LVGYPNAGKSSLLAA-MTRA-HPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGA 63

Query: 68  --QEKFGG--LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKV 123
              +  G   LR     +    ++        T + +              P ++  NKV
Sbjct: 64  SEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKV 123

Query: 124 DIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLP 183
           D+ + +          ++ L    +SA +          L   +   P  E   MP  +P
Sbjct: 124 DLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPE---MPKPVP 180

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 17/166 (10%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           + K  +VG    GK+T     +  +         G    P+         ++   DTAG 
Sbjct: 8   AIKVAIVGRPNVGKSTLFNA-ILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 66

Query: 69  EKFGGLRDGYYIQGQCA----------IIMFDVTSRITYKNVPNWHRDLVRVCENIPIVL 118
            +   +      +              +++  + +             L+       +V+
Sbjct: 67  RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVV 126

Query: 119 CGNKVDIKDRKVKAKSIVFHRKKNLQYYD------ISAKSNYNFEK 158
                 +  R+ +        ++ L + D       SA   +N ++
Sbjct: 127 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.7 bits (91), Expect = 2e-04
 Identities = 24/161 (14%), Positives = 48/161 (29%), Gaps = 7/161 (4%)

Query: 13  VLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG 72
           ++VG    GK+T   + L  + +       GV   P+          F + DT G     
Sbjct: 4   LIVGRPNVGKSTLFNK-LVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 73  GLRDGYYIQGQC------AIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK 126
                  ++         A ++  V          +           +  +L  NK +  
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122

Query: 127 DRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
               +      +     +   +SA+ N N +     + +KL
Sbjct: 123 REFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKL 163

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 28/166 (16%), Positives = 43/166 (25%), Gaps = 8/166 (4%)

Query: 9   SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ 68
           S    +VG    GK+T +   L G                L      G  +    DT G 
Sbjct: 5   SGFVAIVGKPNVGKSTLLNN-LLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 63

Query: 69  EKFGGLRDGYYIQGQCAIIMFDVTSRIT-------YKNVPNWHRDLVRVCENIPIVLCGN 121
            K       +  Q     +                        R L  +   +PI+L GN
Sbjct: 64  HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 123

Query: 122 KVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
           K+D      +A           +   +SA       +    L   +
Sbjct: 124 KLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM 169

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 16/177 (9%)

Query: 14  LVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLV-FHTNRGAIRFNVWDTAGQEKFG 72
           LVG    GK+T +   ++   + K        + P +          F + D  G  +  
Sbjct: 6   LVGFPSVGKSTLLSV-VSSA-KPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 63

Query: 73  GLRDGYYIQGQCAIIMFDVTSRITYKNVPN-------------WHRDLVRVCENIPIVLC 119
               G   Q    I    V   +   +                   +        P ++ 
Sbjct: 64  HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIV 123

Query: 120 GNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 176
            NK+D+ +     ++       +   + ISA +     +    +A +L   P     
Sbjct: 124 ANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTPEFPLY 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	385
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.95
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.95
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.95
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.95
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.94
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.94
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.94
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.93
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.93
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.93
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.93
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.93
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.93
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.92
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.92
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.92
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.91
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.91
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.91
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.91
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.91
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.9
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.9
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.89
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.89
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.89
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.88
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.88
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.88
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.86
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.86
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.86
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.86
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.86
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.85
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.84
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.83
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.83
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.82
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.82
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.82
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.81
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.81
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.8
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.8
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.78
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.77
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.77
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.77
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.75
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.74
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.73
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.73
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.73
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.72
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.71
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.71
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.71
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.71
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.7
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.7
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.68
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.68
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.67
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.66
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.66
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.65
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.61
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.61
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.6
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	99.59
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.59
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.57
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.57
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.54
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.54
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.53
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.51
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	99.46
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.45
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.44
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.44
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.43
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.43
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.43
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.41
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.4
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.38
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.38
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.37
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.37
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.37
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.36
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.35
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.35
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.33
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.32
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.31
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.31
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.3
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.3
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.29
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.29
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.26
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.21
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.21
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.2
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.19
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.18
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.11
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.09
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.08
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.08
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.07
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.04
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.02
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.0
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.95
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.93
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.88
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.86
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.85
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.79
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.78
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.76
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	98.75
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	98.72
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.71
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.69
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.68
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.61
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.58
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.57
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.55
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.55
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.53
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.44
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.38
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	98.36
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.1
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.05
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.99
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	97.96
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.92
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.76
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.65
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	97.63
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.42
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.4
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.33
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	97.26
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.25
d1okkd2	207	GTPase domain of the signal recognition particle r	97.23
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.19
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.17
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.08
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.06
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.06
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.06
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.02
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.95
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.88
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.85
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.84
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.8
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.74
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.73
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	96.73
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.7
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.68
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.62
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.59
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.58
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	96.53
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.52
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.52
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.51
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.49
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	96.46
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.45
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.45
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.42
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.4
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.35
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.35
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.26
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.2
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.16
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.13
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.13
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.12
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.09
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.08
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.04
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.99
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.96
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.95
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.92
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.73
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.7
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.66
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.62
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.4
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.28
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.19
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.02
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	94.88
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.86
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	94.83
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.82
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	94.8
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.8
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	94.77
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.75
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	94.7
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.53
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.52
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	94.48
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.46
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.46
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.39
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.22
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.22
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.19
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.17
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	94.12
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	94.1
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.04
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.03
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	93.94
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	93.9
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.89
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	93.85
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	93.82
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	93.65
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.62
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	93.61
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.54
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	93.53
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	93.47
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	93.46
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.42
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	93.31
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	93.11
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.08
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.82
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.81
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	92.63
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	92.62
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.58
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	92.58
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.55
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	92.5
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	92.46
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	92.37
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	92.32
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	92.29
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	92.18
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	92.07
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	92.01
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	91.82
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	91.8
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	91.79
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	91.79
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	91.61
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	91.55
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	91.42
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	91.38
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	91.37
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	91.36
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.36
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	91.24
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	91.08
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	91.01
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	90.81
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	90.78
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	90.71
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	90.69
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	90.67
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	90.63
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	90.5
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	90.24
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.14
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	90.11
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	90.02
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	89.99
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	89.86
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	89.83
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	89.82
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	89.76
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	89.76
d1tuea_	205	Replication protein E1 helicase domain {Human papi	89.51
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	89.38
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	89.34
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	89.33
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	89.33
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	89.29
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	89.16
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	89.13
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	89.06
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	89.05
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	88.96
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	88.38
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	88.2
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	88.15
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	88.14
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	88.13
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	88.07
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	87.91
d1xpua3	289	Transcription termination factor Rho, ATPase domai	87.89
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	87.65
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	87.62
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	87.55
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	87.5
d2awna2	232	Maltose transport protein MalK, N-terminal domain	87.43
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	87.42
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	87.36
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	87.35
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	86.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	86.74
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	86.73
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	86.52
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	86.49
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	86.48
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	86.4
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	86.18
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	86.13
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	86.02
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	85.65
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	85.4
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	85.39
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	85.21
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	85.02
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	85.0
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	84.98
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	84.8
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	84.76
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	84.71
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	84.6
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	84.56
d1g2912	240	Maltose transport protein MalK, N-terminal domain	84.54
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	84.15
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	84.15
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	83.98
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	83.78
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	83.41
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	83.11
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	82.85
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	82.78
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	82.74
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	82.63
d1okkd2	207	GTPase domain of the signal recognition particle r	82.29
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	82.07
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	81.88
d2qy9a2	211	GTPase domain of the signal recognition particle r	81.76
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	81.68
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	81.5
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	81.44
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	81.44
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	81.37
d1vmaa2	213	GTPase domain of the signal recognition particle r	81.27
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	81.22
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	81.22
d1j8yf2	211	GTPase domain of the signal sequence recognition p	81.06
d1ls1a2	207	GTPase domain of the signal sequence recognition p	80.73
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	80.69
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	80.33
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	80.22
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	80.14

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.8e-29  Score=206.74  Aligned_cols=167  Identities=96%  Similarity=1.541  Sum_probs=147.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|++|||||||+++|+.+.+...+.++.|.++.......+...+.+.+|||+|+..+..++..++.+++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            48999999999999999999999999999999999998888888888999999999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      ||++++.+++.+..|+..+.+...+.|+++|+||+|+.......+...++...+.+++++||+++.|++++|..|++.+.
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~  162 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI  162 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence            99999999999999999888777899999999999998766655556677788889999999999999999999999998


Q ss_pred             cCCCccc
Q psy125          169 GDPNLEF  175 (385)
Q Consensus       169 ~~~~~~~  175 (385)
                      .+|.+.+
T Consensus       163 ~~~~~~~  169 (170)
T d1i2ma_         163 GDPNLEF  169 (170)
T ss_dssp             TCTTCCB
T ss_pred             cCCCCCc
Confidence            8876643

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.4e-28  Score=197.26  Aligned_cols=160  Identities=31%  Similarity=0.621  Sum_probs=145.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|++|||||||+++|+.+.+...+.++.+.+............+.+.+|||+|...+......++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999999999999988888888899999999999999999988899999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      ||++++.+++++..|+..+.....+.|+++|+||+|+...+.  ..+...++...+.+++++||++|.|++++|..|++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~  161 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK  161 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHH
Confidence            999999999999999999888778999999999999876433  345667788888899999999999999999999988


Q ss_pred             Hh
Q psy125          167 LI  168 (385)
Q Consensus       167 l~  168 (385)
                      ++
T Consensus       162 ~l  163 (164)
T d1z2aa1         162 HL  163 (164)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.9e-27  Score=192.24  Aligned_cols=161  Identities=27%  Similarity=0.515  Sum_probs=145.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      |+.+||+|+|.+|||||||+++|+.+.+...+.++.+.++.............+.+||++|++.+..++..++.+++++|
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   81 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   81 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceE
Confidence            67899999999999999999999999999999999999999888888999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHH-hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~-~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|||++++.++..+..|...+.. ...+.|+++|+||+|+...+.  ..+...++...+.+++++||++|.|++++|..|
T Consensus        82 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l  161 (167)
T d1z0ja1          82 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  161 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            99999999999999888877665 346789999999999975433  446677888889999999999999999999999


Q ss_pred             HHHH
Q psy125          164 ARKL  167 (385)
Q Consensus       164 ~~~l  167 (385)
                      ++.+
T Consensus       162 ~~~i  165 (167)
T d1z0ja1         162 SRRI  165 (167)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9986

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.2e-27  Score=191.49  Aligned_cols=159  Identities=29%  Similarity=0.558  Sum_probs=143.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      |||+++|.+|||||||+++|+++.+...+.++.+.+........+...+.+.+||++|++.+...+..++.+++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999999999999888888888888999999999999999999999999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHH-hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~-~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      |++++.++..+..|+..+.. ...+.|+++|+||+|+.....  ..+...++...+..++++||++|.|++++|..|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            99999999999998887776 346889999999999865433  446677888889999999999999999999999998


Q ss_pred             Hh
Q psy125          167 LI  168 (385)
Q Consensus       167 l~  168 (385)
                      +.
T Consensus       161 l~  162 (164)
T d1yzqa1         161 LP  162 (164)
T ss_dssp             SC
T ss_pred             hC
Confidence            75

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=8e-27  Score=190.60  Aligned_cols=163  Identities=30%  Similarity=0.507  Sum_probs=142.7

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      ++|++||+++|++|||||||+++++++.+...+.++.+..+. .....+...+.+.+||++|.+.+...+..+++++|++
T Consensus         1 ~~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   79 (169)
T d1x1ra1           1 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL-KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGF   79 (169)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEE-EEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEE
T ss_pred             CCCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccc-cccccccccccccccccccccccccchhhhhhhccEE
Confidence            468899999999999999999999999998888888876553 4456788899999999999999999999999999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCC-ChHHHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNY-NFEKPF  160 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~  160 (385)
                      ++|||++++.+|.++..|+..+.+.  ..+.|+++++||+|+...+.  ..+..+++...+.+++++||+++. |++++|
T Consensus        80 llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F  159 (169)
T d1x1ra1          80 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTF  159 (169)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHH
T ss_pred             EEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHH
Confidence            9999999999999999999887764  35789999999999876543  356778888889999999999875 999999


Q ss_pred             HHHHHHHhc
Q psy125          161 LWLARKLIG  169 (385)
Q Consensus       161 ~~i~~~l~~  169 (385)
                      ..|++.+.+
T Consensus       160 ~~l~~~i~~  168 (169)
T d1x1ra1         160 HDLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998754

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=5.1e-27  Score=191.85  Aligned_cols=161  Identities=27%  Similarity=0.576  Sum_probs=142.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|++|||||||+++|+.+.+...+.++.+.+............+.+.+|||||++.+..++..+++++|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999999999999999999999988888899999999999999999888889999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHH-hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~-~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||++++.++..+..|...+.. .....|+++++||+|+.....  ..+...++...+.+++++||++|.|++++|..|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~  164 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD  164 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            999999999988888776655 335788999999999876543  34556677888899999999999999999999999


Q ss_pred             HHhc
Q psy125          166 KLIG  169 (385)
Q Consensus       166 ~l~~  169 (385)
                      .+.+
T Consensus       165 ~i~e  168 (169)
T d3raba_         165 VICE  168 (169)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            8754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.9e-27  Score=194.79  Aligned_cols=168  Identities=25%  Similarity=0.407  Sum_probs=140.8

Q ss_pred             CCCCCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhc
Q psy125            1 MAAEMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI   80 (385)
Q Consensus         1 m~~~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~   80 (385)
                      |+..+....+||+|+|.+|||||||+++|+.+.+...+.++.+... .......+..+.+.+||++|++.+...+..++.
T Consensus         1 m~~~~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~   79 (185)
T d2atxa1           1 MAHGPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP   79 (185)
T ss_dssp             CSSCCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT
T ss_pred             CCCCCCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeee-eEEEeeCCceEEeecccccccchhhhhhhhccc
Confidence            7788888899999999999999999999999999888888887544 445566778899999999999999999999999


Q ss_pred             cCcEEEEEEeCCChhhhhcHHH-HHHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcC-Ce
Q psy125           81 QGQCAIIMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKN-LQ  144 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~-~~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~  144 (385)
                      ++|++++|||++++.+|+++.. |...+.....+.|+++|+||+|+....              ...+..+++...+ ..
T Consensus        80 ~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~  159 (185)
T d2atxa1          80 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACC  159 (185)
T ss_dssp             TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSC
T ss_pred             ccceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCE
Confidence            9999999999999999987654 555555566789999999999986422              1234455666555 68


Q ss_pred             EEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          145 YYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       145 ~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                      ++++||+++.|++++|..++++++.
T Consensus       160 ~~E~SAk~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         160 YVECSALTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             EEEecCCCCcCHHHHHHHHHHHHcC
Confidence            9999999999999999999998753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.5e-27  Score=191.29  Aligned_cols=161  Identities=32%  Similarity=0.576  Sum_probs=138.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+|+|.+|||||||+++++.+.+...+.++.+..........+...+.+.+||++|+..+..++..+++++|++++|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            58999999999999999999999999999999999999998888888899999999999999988999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHH-hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~-~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||++++.+|+.+..|+..+.. .....|+++++||+|+...+.  ..+...++...+.+++++||++|.|++++|..|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~  162 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK  162 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             EeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHH
Confidence            999999999999888877655 345778899999999876543  45667788888999999999999999999999999


Q ss_pred             HHhc
Q psy125          166 KLIG  169 (385)
Q Consensus       166 ~l~~  169 (385)
                      .+.+
T Consensus       163 ~i~~  166 (167)
T d1z08a1         163 RMIE  166 (167)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            8754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.95  E-value=1.1e-26  Score=189.67  Aligned_cols=162  Identities=27%  Similarity=0.509  Sum_probs=139.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      +|.+||+|+|++|||||||+++++.+.+...+.++.+.++. .....++..+.+.+||++|...+..+...+++++|+++
T Consensus         2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (168)
T d1u8za_           2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR-KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc-cccccccccccccccccccccchhhhhhhcccccceeE
Confidence            57899999999999999999999999999999999887654 44567888999999999999988888889999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      +|||+++..+++.+..|+..+.+.  ..+.|+++|+||+|+...+.  ..+...++...+.+++++||++|.|++++|..
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            999999999999999999888763  35789999999999866433  45667788888999999999999999999999


Q ss_pred             HHHHHhc
Q psy125          163 LARKLIG  169 (385)
Q Consensus       163 i~~~l~~  169 (385)
                      |++.+..
T Consensus       161 l~~~i~~  167 (168)
T d1u8za_         161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9988743

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-26  Score=189.47  Aligned_cols=164  Identities=27%  Similarity=0.520  Sum_probs=141.8

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      +..+.+||+|+|.+|||||||+++|+.+.+...+.++.... .......++..+.+.+||++|.+.+...+..++.++|+
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDS-YTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccc-eeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            45577999999999999999999999999888887776533 34567778889999999999999999999999999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      +++|||++++.++..+..|+..+.+.  ..+.|+++|+||+|+...+.  ..+...++...+.+++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999998887653  36789999999999875433  455677888889999999999999999999


Q ss_pred             HHHHHHHhc
Q psy125          161 LWLARKLIG  169 (385)
Q Consensus       161 ~~i~~~l~~  169 (385)
                      ..|++.+..
T Consensus       161 ~~l~~~i~k  169 (173)
T d2fn4a1         161 EQLVRAVRK  169 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998743

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-26  Score=189.21  Aligned_cols=162  Identities=27%  Similarity=0.517  Sum_probs=142.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      |+.+||+++|++|||||||+++|+++.+...+.++.+.+.... .......+.+.+||++|.+.+...+..++.++++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            5789999999999999999999999999988889988776655 456778899999999999998888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|+|++++.+++.+..|+..+.+.  ..+.|+++|+||+|+..+.. ..+...++...+.+++++||++|.|++++|..|
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999999999999887763  35789999999999876443 445667888888899999999999999999999


Q ss_pred             HHHHhc
Q psy125          164 ARKLIG  169 (385)
Q Consensus       164 ~~~l~~  169 (385)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998754

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.3e-27  Score=190.98  Aligned_cols=161  Identities=26%  Similarity=0.499  Sum_probs=139.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      |+.+||+|+|++|||||||+++|+.+.+...+.++.+.. .......+...+.+.+||++|.+.+......++.++++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeee-eeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            678999999999999999999999999998888888754 3455677888999999999999988888889999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      +|||++++.++.++..|...+...  ..+.|+++|+||+|+...+.  ..+...++...+.+++++||++|.|++++|..
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            999999999999999998877653  35789999999999865433  34556677788889999999999999999999


Q ss_pred             HHHHHh
Q psy125          163 LARKLI  168 (385)
Q Consensus       163 i~~~l~  168 (385)
                      |++.+.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            998864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-26  Score=188.16  Aligned_cols=159  Identities=31%  Similarity=0.575  Sum_probs=142.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+|+|++|||||||+++|+++.+...+.++.+.+........++..+.+.+||++|++.+...+..+++++|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            48999999999999999999999999999989899888888899999999999999999999998999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHH-hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~-~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||+++..++..+..|+..+.+ .....|+++++||+|+.....  ..+...++...+.+++++||++|.|++++|..|++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~  163 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK  163 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            999999999998888877766 345788999999999865443  34566788888899999999999999999999988


Q ss_pred             HH
Q psy125          166 KL  167 (385)
Q Consensus       166 ~l  167 (385)
                      .+
T Consensus       164 ~i  165 (166)
T d1z0fa1         164 KI  165 (166)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.8e-26  Score=188.23  Aligned_cols=161  Identities=30%  Similarity=0.543  Sum_probs=139.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      |+.+||+++|.+|||||||+++++.+.+...+.++.+..... ....+...+.+.+||++|+..+...+..+++++|+++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK-QVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccce-eEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            578999999999999999999999999999988998866644 4567888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHh-cCCeEEEEcCCCCCChHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRK-KNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      +|||++++.+++++..|+..+.+.  ..+.|+++|+||+|+.....  ..+...++.. .+.+++++||++|.|++++|.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            999999999999999999887663  35789999999999876543  3334455554 567999999999999999999


Q ss_pred             HHHHHHh
Q psy125          162 WLARKLI  168 (385)
Q Consensus       162 ~i~~~l~  168 (385)
                      .|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9998863

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.8e-27  Score=190.57  Aligned_cols=161  Identities=34%  Similarity=0.639  Sum_probs=142.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+|+|++|||||||+++|+.+.+.....++.+.+............+.+.+|||+|++.+...+..++++++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            48999999999999999999999999988899999888888888899999999999999999988899999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      +|++++.++..+..|...+.+. ....|+++++||+|+.....  ..+...+....+.+++++||++|.|++++|..|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             eecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            9999999999998888877664 35688999999999865433  34566788888899999999999999999999988


Q ss_pred             HHhc
Q psy125          166 KLIG  169 (385)
Q Consensus       166 ~l~~  169 (385)
                      .+..
T Consensus       165 ~l~~  168 (171)
T d2ew1a1         165 RLIS  168 (171)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-26  Score=187.33  Aligned_cols=160  Identities=24%  Similarity=0.340  Sum_probs=140.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+..+. .....++..+.+.+||++|...+..+...++.++|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE-EEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccc-eEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            35689999999999999999999999988888888887653 45677888999999999999999888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      +|||++++.++..+..|+..+.+.  ..+.|+++|+||+|+...+.  ..+...++...+.+++++||++|.|++++|..
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            999999999999999998887663  35789999999999876543  44566788888899999999999999999999


Q ss_pred             HHHHH
Q psy125          163 LARKL  167 (385)
Q Consensus       163 i~~~l  167 (385)
                      |++.+
T Consensus       161 li~~~  165 (167)
T d1xtqa1         161 IILEA  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.2e-26  Score=187.27  Aligned_cols=162  Identities=31%  Similarity=0.590  Sum_probs=144.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      ..+||+++|.+|||||||+++|+.+.+...+.++.+.+............+.+.+||++|++.+...+..++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            45899999999999999999999999999999999999988888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHH-hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~-~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |+|+++..++..+..|...+.+ ...+.|+++|+||+|+...+.  ......++...+.+++++||++|.|++++|..|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999988888877765 446889999999999876533  3456677888888999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       165 ~~i~~  169 (170)
T d1r2qa_         165 KKLPK  169 (170)
T ss_dssp             HTSCC
T ss_pred             HHHhh
Confidence            87643

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=4.8e-26  Score=187.46  Aligned_cols=168  Identities=31%  Similarity=0.580  Sum_probs=148.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|.+|||||||+++|.++.+...+.++.+.+........+...+.+.+|||+|++.+..++..++.++|+++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            46799999999999999999999999999999999988888888888899999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      +|||++++.++..+..|+..+.+.  ....|+++++||.|...... ..+...+....+..++++||++|.|++++|.++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l  164 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  164 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999998887653  24578889999999765444 445667888889999999999999999999999


Q ss_pred             HHHHhcCCCcc
Q psy125          164 ARKLIGDPNLE  174 (385)
Q Consensus       164 ~~~l~~~~~~~  174 (385)
                      ++.+.+.|.++
T Consensus       165 ~~~l~~~p~l~  175 (177)
T d1x3sa1         165 VEKIIQTPGLW  175 (177)
T ss_dssp             HHHHHTSGGGT
T ss_pred             HHHHccCcccc
Confidence            99999887654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.6e-26  Score=185.59  Aligned_cols=160  Identities=32%  Similarity=0.605  Sum_probs=139.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|++|||||||+++|+++.+...+.++.+.+........+...+.+.+||++|.+.+...+..++.+++++|+|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            48999999999999999999999999988888888888888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHhc-CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~~-~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||++++.++..+..|+..+.... .+.|+++|+||+|+.+...  ......+....+.+++++||++|.|++++|..+++
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~  163 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT  163 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHH
Confidence            99999999999999988877643 5689999999999876433  33445667778889999999999999999999888


Q ss_pred             HHh
Q psy125          166 KLI  168 (385)
Q Consensus       166 ~l~  168 (385)
                      .+.
T Consensus       164 ~i~  166 (175)
T d2f9la1         164 EIY  166 (175)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.3e-26  Score=185.01  Aligned_cols=161  Identities=30%  Similarity=0.577  Sum_probs=138.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+|+|++|||||||+++++++.+...+.++.+.+............+.+.+||++|+..+...+..++..+|++++|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            47999999999999999999999999888888888888888888888899999999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||++++.++..+..|+..+... ..+.|+++|+||+|+...+.  ..+...++...+.+++++||++|.|++++|..|++
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~  162 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK  162 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999888877663 36789999999999865433  44566677888899999999999999999999999


Q ss_pred             HHhc
Q psy125          166 KLIG  169 (385)
Q Consensus       166 ~l~~  169 (385)
                      .+.+
T Consensus       163 ~i~~  166 (173)
T d2a5ja1         163 EIYR  166 (173)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.5e-26  Score=187.29  Aligned_cols=159  Identities=24%  Similarity=0.417  Sum_probs=136.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|.+|||||||+++|+++.+...+.++.+..... ....+...+.+.+||++|.+.+......++.++|++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~-~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecccc-ceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            5899999999999999999999999988888998866544 456788889999999999999888889999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHH---hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVR---VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~---~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i  163 (385)
                      ||++++.++..+..|+..+..   ...+.|+++|+||+|+...+.  ..+...++...+.+++++||++|.|++++|..|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999998888877654   235789999999999865433  345677888888999999999999999999999


Q ss_pred             HHHHh
Q psy125          164 ARKLI  168 (385)
Q Consensus       164 ~~~l~  168 (385)
                      ++.+.
T Consensus       161 ~~~~~  165 (171)
T d2erxa1         161 LNLEK  165 (171)
T ss_dssp             HHTCC
T ss_pred             HHHHH
Confidence            98653

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.3e-26  Score=188.81  Aligned_cols=162  Identities=29%  Similarity=0.587  Sum_probs=143.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+|+|++|||||||+++|+++.+...+.++.+.++...........+.+.+|||+|++.+..++..++++++++|+|
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v   85 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   85 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999999999999999999888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHH-hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~-~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      ||++++.++..+..|...+.+ ...+.|+++|+||+|+.....  ..+...+....+..++++||++|.|++++|..|++
T Consensus        86 ~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~  165 (194)
T d2bcgy1          86 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR  165 (194)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             EeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHH
Confidence            999999999988887777665 446789999999999876433  34456677788889999999999999999999998


Q ss_pred             HHhcC
Q psy125          166 KLIGD  170 (385)
Q Consensus       166 ~l~~~  170 (385)
                      .+...
T Consensus       166 ~i~~~  170 (194)
T d2bcgy1         166 QIKES  170 (194)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.7e-27  Score=192.81  Aligned_cols=122  Identities=95%  Similarity=1.533  Sum_probs=111.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+++|+.+.|...+.+|+|.++..+.+..++..+.+.+|||+|+.++..+++.|+++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            48999999999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh---------------------------------------------hheeccccCCCchHHHHHHHHHHh
Q psy125          304 FDVTSRITYKN---------------------------------------------YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       304 ~d~~~~~s~~~---------------------------------------------~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                      ||++++.||++                                             |+|||||+|.||+++|.+|+++|+
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~  162 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI  162 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence            99999999999                                             899999999999999999999999


Q ss_pred             cCCCccc
Q psy125          339 GDPNLEF  345 (385)
Q Consensus       339 ~~~~~~~  345 (385)
                      .+++..+
T Consensus       163 ~~~~~~~  169 (170)
T d1i2ma_         163 GDPNLEF  169 (170)
T ss_dssp             TCTTCCB
T ss_pred             cCCCCCc
Confidence            9887654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.2e-26  Score=184.39  Aligned_cols=158  Identities=19%  Similarity=0.243  Sum_probs=121.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+|+|++|||||||+++|.+..+ ....++.+.++ ......++..+.+.+||++|++.+..++..+++++|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~-~~~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEEE-EEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCcc-CCcCCeeeeee-cceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            7999999999999999999777654 33444555444 344667888999999999999999999999999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc--CCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~--~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      |++++.+++.+..|+..+....  .+.|+++|+||+|+...+.  ..+...++...+.+++++||++|.|++++|..|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            9999999999999998876643  4679999999999876533  44566778888899999999999999999999998


Q ss_pred             HHhc
Q psy125          166 KLIG  169 (385)
Q Consensus       166 ~l~~  169 (385)
                      .+..
T Consensus       160 ~i~~  163 (168)
T d2gjsa1         160 QIRL  163 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7643

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-25  Score=185.47  Aligned_cols=159  Identities=26%  Similarity=0.444  Sum_probs=133.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      ..||+|+|++|||||||+++++.+.+...+.++.+.. .......+...+.+.+||++|++.+...+..++.++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFEN-YVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEE-EEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeee-ccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            3799999999999999999999999988888887744 345566788899999999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHH-HHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcC-CeEEEEcCCC
Q psy125           89 FDVTSRITYKNVPNW-HRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKN-LQYYDISAKS  152 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~-~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~Sa~~  152 (385)
                      ||++++.+|+++..| ...+.....+.|+++|+||+|+.....              ..+...++...+ .+++++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            999999999887654 444554667899999999999864321              234455666655 4899999999


Q ss_pred             CCChHHHHHHHHHHHh
Q psy125          153 NYNFEKPFLWLARKLI  168 (385)
Q Consensus       153 ~~gi~~l~~~i~~~l~  168 (385)
                      |.|++++|..++++++
T Consensus       161 ~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         161 KDGVREVFEMATRAAL  176 (177)
T ss_dssp             CTTHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHh
Confidence            9999999999999875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=9.9e-26  Score=186.61  Aligned_cols=163  Identities=28%  Similarity=0.515  Sum_probs=136.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+|+|.+|||||||+++|+.+.+...+.++.+... ......+...+.+.+||++|++.+...+..++.++|+++
T Consensus         3 p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   81 (183)
T d1mh1a_           3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSL   81 (183)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeece-eeeeeccCcceEEEeecccccccchhhhhhcccccceee
Confidence            4679999999999999999999999999999888887543 345667888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHH-HHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhcC-CeEEEEcC
Q psy125           87 IMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKKN-LQYYDISA  150 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~-~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~~-~~~~~~Sa  150 (385)
                      +|||++++.+|+++.. |...+.....+.|+++|+||+|+...+.              ..+...+++..+ ..++++||
T Consensus        82 lv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SA  161 (183)
T d1mh1a_          82 ICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  161 (183)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             eeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCC
Confidence            9999999999998865 5555555667899999999999854322              223444555544 68999999


Q ss_pred             CCCCChHHHHHHHHHHHhcC
Q psy125          151 KSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~  170 (385)
                      ++|.|++++|..|++.++..
T Consensus       162 k~~~~V~e~F~~l~~~il~p  181 (183)
T d1mh1a_         162 LTQRGLKTVFDEAIRAVLCP  181 (183)
T ss_dssp             TTCTTHHHHHHHHHHHHSCC
T ss_pred             CCCcCHHHHHHHHHHHHcCC
Confidence            99999999999999998654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.6e-26  Score=185.80  Aligned_cols=161  Identities=32%  Similarity=0.620  Sum_probs=142.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+|+|.+|||||||+++|+.+.+...+.++.+.+........+...+.+.+|||+|++.+..++..++.+++++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            48999999999999999999999999999999999998888888889999999999999999988899999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR  165 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~  165 (385)
                      +|.+++.++..+..|...+... ..+.|+++|+||+|+.....  ......++...+.+++++||++|.|++++|..+++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~  164 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR  164 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence            9999999999988888877663 45789999999999865443  33445677788889999999999999999999998


Q ss_pred             HHhc
Q psy125          166 KLIG  169 (385)
Q Consensus       166 ~l~~  169 (385)
                      .+.+
T Consensus       165 ~i~~  168 (174)
T d2bmea1         165 KILN  168 (174)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-25  Score=183.95  Aligned_cols=159  Identities=28%  Similarity=0.547  Sum_probs=134.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+|+|.+|||||||+++++.+.+...+.++.+... ......+...+.+.+||++|...+......++.++|++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE-EEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccce-eeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            49999999999999999999999998888888887544 44566788889999999999999888888999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      ||++++.++..+..|+..+...  ....|+++|+||+|+.....  ..+...++...+.+++++||++|.|++++|..|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            9999999999999998877653  35789999999999865432  4566778888889999999999999999999999


Q ss_pred             HHHh
Q psy125          165 RKLI  168 (385)
Q Consensus       165 ~~l~  168 (385)
                      +.+.
T Consensus       164 ~~i~  167 (171)
T d2erya1         164 RVIR  167 (171)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.4e-25  Score=187.06  Aligned_cols=163  Identities=26%  Similarity=0.462  Sum_probs=136.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      |+.+||+|+|++|||||||+++|+.+.+...+.++.+... .......+..+.+.+||++|++.+...+..++.++|+++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec-ceeEeeCCceeeeeccccccchhhhhhhhhcccccceee
Confidence            4679999999999999999999999999999889888554 444556778899999999999999999999999999999


Q ss_pred             EEEeCCChhhhhcHHH-HHHHHHHhcCCCCEEEEEeCCCCcchhh--------------hHHHHHHHHhc-CCeEEEEcC
Q psy125           87 IMFDVTSRITYKNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRKV--------------KAKSIVFHRKK-NLQYYDISA  150 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~-~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--------------~~~~~~~~~~~-~~~~~~~Sa  150 (385)
                      +|||++++.+|+++.. |...+.....+.|+++|+||+|+.....              ..+...++... +..++++||
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            9999999999999876 4454555667899999999999864321              23344566554 568999999


Q ss_pred             CCCCChHHHHHHHHHHHhcC
Q psy125          151 KSNYNFEKPFLWLARKLIGD  170 (385)
Q Consensus       151 ~~~~gi~~l~~~i~~~l~~~  170 (385)
                      +++.|++++|..+++.+.+.
T Consensus       160 k~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTSC
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            99999999999999988654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.5e-25  Score=183.35  Aligned_cols=159  Identities=30%  Similarity=0.583  Sum_probs=141.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      ++||+++|++|||||||+++++++.+...+.++.|.++...........+.+.+||++|.+.+...+..++.++|++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            58999999999999999999999999999999999988888888889999999999999999888889999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHH-hcCCCCEEEEEeCCCCcchh-----hhHHHHHHHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRK-----VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~-~~~~~~~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      ||++++.++.++..|+..... .....++++++||+|+....     ...+..++++..+.+++++||++|.|++++|..
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            999999999998888876555 44578899999999985431     134567788888999999999999999999999


Q ss_pred             HHHHH
Q psy125          163 LARKL  167 (385)
Q Consensus       163 i~~~l  167 (385)
                      |++.+
T Consensus       163 i~~~i  167 (170)
T d1ek0a_         163 IGEKI  167 (170)
T ss_dssp             HHTTS
T ss_pred             HHHHh
Confidence            98765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.7e-25  Score=182.26  Aligned_cols=161  Identities=26%  Similarity=0.562  Sum_probs=135.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      -+||+++|.+|||||||+++|+.+.+...+.++.+.++........+..+.+.+|||||++.+..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999999999999999999988888899999999999999999999999999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh-hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV-KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARK  166 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~  166 (385)
                      ||++++.+++.+..|+...... ....|++++++|.|+..... ..+...++...+.+++++||+++.|++++|..|++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~  161 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL  161 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHH
Confidence            9999999999988877766653 35677888999999865443 445666777888999999999999999999999998


Q ss_pred             Hhc
Q psy125          167 LIG  169 (385)
Q Consensus       167 l~~  169 (385)
                      +.+
T Consensus       162 i~~  164 (166)
T d1g16a_         162 IQE  164 (166)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.4e-25  Score=180.65  Aligned_cols=158  Identities=25%  Similarity=0.369  Sum_probs=133.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      ++||+|+|++|||||||+++++.+.+...+.|+.+..+... ...+...+.+.+||++|...+. ....++.+++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~-~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQ-ATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceecccccc-ccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            58999999999999999999999999999999988876554 3457788999999999997654 456688999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCC-hHHHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYN-FEKPFLWL  163 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~g-i~~l~~~i  163 (385)
                      ||++++.++..+..|+.....  ...+.|+++|+||+|+...+.  ..+...++...+.+++++||++|.| ++++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            999999999998877654433  346799999999999976433  4566778888899999999999985 99999999


Q ss_pred             HHHHh
Q psy125          164 ARKLI  168 (385)
Q Consensus       164 ~~~l~  168 (385)
                      ++.+.
T Consensus       160 ~~~i~  164 (168)
T d2atva1         160 CREVR  164 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1e-25  Score=184.83  Aligned_cols=162  Identities=28%  Similarity=0.593  Sum_probs=114.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      .-+||+++|.+|||||||+++|+++.+.....++.+.+........+...+.+.+|||||++.+...+..+++++|++|+
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            45899999999999999999999998888888999988888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHH-hcCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~-~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |||++++.++..+..|...+.. ...+.|+++|+||.|+.....  ..+...+....+.+++++||+++.|++++|.+|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~  164 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  164 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999998888877765 446789999999999875433  3445667778889999999999999999999999


Q ss_pred             HHHhc
Q psy125          165 RKLIG  169 (385)
Q Consensus       165 ~~l~~  169 (385)
                      +.+..
T Consensus       165 ~~i~~  169 (173)
T d2fu5c1         165 RDIKA  169 (173)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98743

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5e-25  Score=180.11  Aligned_cols=160  Identities=29%  Similarity=0.621  Sum_probs=131.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCc-ccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKK-YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~-~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      .+||+++|++|||||||+++++++.+... ..++.+.+.........+..+.+.+|||+|++.+...+..++.++|++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            58999999999999999999999887544 45667888888888888999999999999999999889999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHh-cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHHHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRV-CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~-~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~  164 (385)
                      |||++++.++..+..|...+... ....|+++++||+|+.....  ..+...+....+.+++++||++|.|++++|..|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            99999999999988887766653 35788999999999876433  3456677888889999999999999999999999


Q ss_pred             HHHh
Q psy125          165 RKLI  168 (385)
Q Consensus       165 ~~l~  168 (385)
                      +.+.
T Consensus       166 ~~i~  169 (170)
T d2g6ba1         166 KELK  169 (170)
T ss_dssp             HHHH
T ss_pred             HHcC
Confidence            8864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7.6e-25  Score=179.70  Aligned_cols=163  Identities=31%  Similarity=0.669  Sum_probs=138.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+-+||+|+|++|||||||+++|+.+.+...+.++.+.+............+.+.+||++|..........++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            45689999999999999999999999999999999999988888888889999999999999888888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh-----cCCCCEEEEEeCCCCcchhh-hHHHHHHHHhc-CCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV-----CENIPIVLCGNKVDIKDRKV-KAKSIVFHRKK-NLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~-----~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~-~~~~~~~Sa~~~~gi~~l  159 (385)
                      +++|++++.++..+..|+..+...     ..+.|+++|+||+|+.++.. ..+...+++.. ..+++++||+++.|++++
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  163 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA  163 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHH
Confidence            999999999999999998777653     24689999999999876443 34556677655 579999999999999999


Q ss_pred             HHHHHHHHhc
Q psy125          160 FLWLARKLIG  169 (385)
Q Consensus       160 ~~~i~~~l~~  169 (385)
                      |..|++.++.
T Consensus       164 f~~l~~~il~  173 (174)
T d1wmsa_         164 FEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.9e-26  Score=184.72  Aligned_cols=116  Identities=36%  Similarity=0.615  Sum_probs=105.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+++|+.+.|...+.+|.+.+...+.+..++..+.+.+|||+|++++..+++.+++++|++|+|
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v   82 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILV   82 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||++                                                |+|||||+|.||+++|.+|++
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~  162 (167)
T d1z08a1          83 YDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK  162 (167)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHH
T ss_pred             EeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHH
Confidence            99999999998                                                899999999999999999999


Q ss_pred             HHhc
Q psy125          336 KLIG  339 (385)
Q Consensus       336 ~i~~  339 (385)
                      +|++
T Consensus       163 ~i~~  166 (167)
T d1z08a1         163 RMIE  166 (167)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            9875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=8.4e-25  Score=181.12  Aligned_cols=160  Identities=32%  Similarity=0.676  Sum_probs=139.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+|+|.+|||||||+++|+++.+...+.++.+.++...........+.+.+||++|.......+..++.+++++++|+
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999999999999999999999999999999999999999999988888899999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcchhhhH-HHHHHH-HhcCCeEEEEcCCCCCChHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKVKA-KSIVFH-RKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~~~~~-~~~~~~-~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      |.++..++..+..|+..+....     .+.|+++|+||+|+.+..... +...+. ...+.+++++||++|.|++++|..
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~  162 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT  162 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999988776532     367999999999987654432 333344 445779999999999999999999


Q ss_pred             HHHHHhc
Q psy125          163 LARKLIG  169 (385)
Q Consensus       163 i~~~l~~  169 (385)
                      |++.+..
T Consensus       163 l~~~i~~  169 (184)
T d1vg8a_         163 IARNALK  169 (184)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.6e-26  Score=185.58  Aligned_cols=117  Identities=29%  Similarity=0.605  Sum_probs=105.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||||+++++.++|...+.+|++.++....+.+++..+.+.+|||||+++|..+++.++++++++|+|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          304 FDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       304 ~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      ||.+++.||++                                               |+||||++|.||+++|++|++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~  161 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL  161 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHH
Confidence            99999999988                                               8999999999999999999998


Q ss_pred             HhcC
Q psy125          337 LIGD  340 (385)
Q Consensus       337 i~~~  340 (385)
                      +.++
T Consensus       162 i~~k  165 (166)
T d1g16a_         162 IQEK  165 (166)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            8654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=9.3e-26  Score=184.26  Aligned_cols=117  Identities=29%  Similarity=0.597  Sum_probs=111.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|++++..++|...+.++.+.+.....+......+.+.+|||||++++..+++.+++++|++|+|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999999999999999999999999999899999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||..                                                |+||||++|.||+++|++|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~  164 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD  164 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            99999999988                                                899999999999999999999


Q ss_pred             HHhcC
Q psy125          336 KLIGD  340 (385)
Q Consensus       336 ~i~~~  340 (385)
                      .|.++
T Consensus       165 ~i~ek  169 (169)
T d3raba_         165 VICEK  169 (169)
T ss_dssp             HHHTC
T ss_pred             HHhhC
Confidence            98763

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.7e-25  Score=184.22  Aligned_cols=115  Identities=28%  Similarity=0.417  Sum_probs=107.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      ..||+++|++|||||+|+++|..+.|...+.+|++ +........++..+.+.||||+|++.|..+++.|++++|++|+|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999999999999987 45566677888999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------------------hheecccc
Q psy125          304 FDVTSRITYKN-------------------------------------------------------------YYDISAKS  322 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------------------~~e~Sak~  322 (385)
                      ||++++.||++                                                             |+|||||+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999987                                                             78999999


Q ss_pred             CCCchHHHHHHHHHHhc
Q psy125          323 NYNFEKPFLWLARKLIG  339 (385)
Q Consensus       323 ~~~v~~~f~~l~~~i~~  339 (385)
                      |.||+++|+.|++.+++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=9.7e-25  Score=179.29  Aligned_cols=161  Identities=27%  Similarity=0.583  Sum_probs=123.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-CeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      -+||+++|++|||||||+++|+++.+...+.++.+.+......... ...+.+.+|||+|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            4799999999999999999999999988888888877666555443 456789999999999888888899999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHHhc-----CCCCEEEEEeCCCCcchhh---hHHHHHHHHhcC-CeEEEEcCCCCCChHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVRVC-----ENIPIVLCGNKVDIKDRKV---KAKSIVFHRKKN-LQYYDISAKSNYNFEK  158 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~~~-----~~~~~ilv~nK~Dl~~~~~---~~~~~~~~~~~~-~~~~~~Sa~~~~gi~~  158 (385)
                      |||++++.++..+..|+..+....     .++|+++++||+|+...+.   ..+..+++...+ .+++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            999999999999999998876522     4789999999999876432   344555666654 6899999999999999


Q ss_pred             HHHHHHHHHhc
Q psy125          159 PFLWLARKLIG  169 (385)
Q Consensus       159 l~~~i~~~l~~  169 (385)
                      +|..|++.+.+
T Consensus       162 ~f~~l~~~~l~  172 (175)
T d1ky3a_         162 AFEEIARSALQ  172 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999987754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1e-25  Score=186.77  Aligned_cols=117  Identities=26%  Similarity=0.407  Sum_probs=108.4

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||+|+++|+.+.|...+.+|++ +...+.+...+..+.+.+|||+|+++|..++..|++++|+++
T Consensus         7 ~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~i   85 (185)
T d2atxa1           7 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   85 (185)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceee
Confidence            3568999999999999999999999999999999997 455667778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------------------hheecc
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------------------YYDISA  320 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------------------~~e~Sa  320 (385)
                      +|||++++.||++                                                             |+||||
T Consensus        86 lv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SA  165 (185)
T d2atxa1          86 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA  165 (185)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred             eccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecC
Confidence            9999999999987                                                             789999


Q ss_pred             ccCCCchHHHHHHHHHHhc
Q psy125          321 KSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       321 k~~~~v~~~f~~l~~~i~~  339 (385)
                      |+|.||+++|+.++++|+.
T Consensus       166 k~~~gv~e~F~~li~~il~  184 (185)
T d2atxa1         166 LTQKGLKTVFDEAIIAILT  184 (185)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHcC
Confidence            9999999999999999864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.1e-25  Score=184.16  Aligned_cols=116  Identities=32%  Similarity=0.594  Sum_probs=111.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|++|||||+|+++|+.++|...+.+|+|.++..+.+..++..+.+.||||+|++++..+++.+++++|++|+|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh---------------------------------------------------hheeccccCCCchHHHHH
Q psy125          304 FDVTSRITYKN---------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       304 ~d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      ||++++.||++                                                   |+|||||+|.||+++|.+
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999                                                   899999999999999999


Q ss_pred             HHHHHhc
Q psy125          333 LARKLIG  339 (385)
Q Consensus       333 l~~~i~~  339 (385)
                      |+++|..
T Consensus       163 i~~~i~~  169 (170)
T d1ek0a_         163 IGEKIPL  169 (170)
T ss_dssp             HHTTSCC
T ss_pred             HHHHhcc
Confidence            9998753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.9e-25  Score=183.76  Aligned_cols=118  Identities=30%  Similarity=0.507  Sum_probs=109.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|++|||||+|+++|+.+.|...+.+|++ +...+.+..++..+.+.+||++|++.|..++..+++++|++|+
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI   82 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhcccccceeee
Confidence            568999999999999999999999999999999997 4455667789999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------------------hheeccc
Q psy125          303 MFDVTSRITYKN-------------------------------------------------------------YYDISAK  321 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------------------~~e~Sak  321 (385)
                      |||++++.||++                                                             |+|||||
T Consensus        83 v~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk  162 (183)
T d1mh1a_          83 CFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL  162 (183)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             eeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCC
Confidence            999999999988                                                             7999999


Q ss_pred             cCCCchHHHHHHHHHHhcCC
Q psy125          322 SNYNFEKPFLWLARKLIGDP  341 (385)
Q Consensus       322 ~~~~v~~~f~~l~~~i~~~~  341 (385)
                      +|.||+++|.+|+++++..+
T Consensus       163 ~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         163 TQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TCTTHHHHHHHHHHHHSCCC
T ss_pred             CCcCHHHHHHHHHHHHcCCC
Confidence            99999999999999997653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.6e-25  Score=183.21  Aligned_cols=117  Identities=38%  Similarity=0.646  Sum_probs=111.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+++++.+.|...+.++.+.++....+.+++..+.+.+|||||+++|..+++.|+++++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||++                                                |++|||++|.||+++|.+|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             eecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            99999999988                                                899999999999999999999


Q ss_pred             HHhcC
Q psy125          336 KLIGD  340 (385)
Q Consensus       336 ~i~~~  340 (385)
                      +++..
T Consensus       165 ~l~~~  169 (171)
T d2ew1a1         165 RLISE  169 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98753

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.8e-24  Score=175.88  Aligned_cols=157  Identities=29%  Similarity=0.560  Sum_probs=135.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc-chhhhhccCcEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-LRDGYYIQGQCAI   86 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-~~~~~~~~~d~il   86 (385)
                      +.+||+++|++|||||||+++|+.+.+...+.++.+............+...+.+||++|...... .+..++.++|++|
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            358999999999999999999999999999999999888888888899999999999999876544 4567889999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCC---CCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKS---NYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~---~~gi~~l  159 (385)
                      +|||++++.+++.+..|+..+.+.  ..+.|+++|+||+|+.....  ..+...++...+.+++++||++   +.|++++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            999999999999999999888764  35789999999999876432  4456678888889999999987   5588898


Q ss_pred             HHHHH
Q psy125          160 FLWLA  164 (385)
Q Consensus       160 ~~~i~  164 (385)
                      |..||
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            88764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4e-25  Score=183.48  Aligned_cols=161  Identities=33%  Similarity=0.571  Sum_probs=135.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC----------CeeEEEEEEeCCCccccccchhhh
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN----------RGAIRFNVWDTAGQEKFGGLRDGY   78 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~----------~~~~~~~i~Dt~g~~~~~~~~~~~   78 (385)
                      .+||+|+|++|||||||+++|+.+.+...+.++.+.+........+          ...+.+.+|||+|++.+..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            4899999999999999999999999888888888877655544332          235789999999999999999999


Q ss_pred             hccCcEEEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCC
Q psy125           79 YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNY  154 (385)
Q Consensus        79 ~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~  154 (385)
                      +.++|++|+|||++++.+++.+..|+..+...  ....|+++|+||.|+...+.  ..+...++...+.+++++||++|.
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~  164 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ  164 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            99999999999999999999988888766542  34578899999999876543  345667888888999999999999


Q ss_pred             ChHHHHHHHHHHHhc
Q psy125          155 NFEKPFLWLARKLIG  169 (385)
Q Consensus       155 gi~~l~~~i~~~l~~  169 (385)
                      |++++|..|++.+.+
T Consensus       165 ~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         165 NVEKAVETLLDLIMK  179 (186)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999997753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.9e-25  Score=183.64  Aligned_cols=118  Identities=29%  Similarity=0.433  Sum_probs=109.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|++|||||+|+++|+.+.|...+.+|++. .......+++..+.+.+|||+|+++|..+++.+++++|++++|
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   81 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC   81 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecc
Confidence            589999999999999999999999999999999974 4556667788899999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------------------hheecccc
Q psy125          304 FDVTSRITYKN-------------------------------------------------------------YYDISAKS  322 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------------------~~e~Sak~  322 (385)
                      ||++++.||++                                                             |+|||||+
T Consensus        82 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~  161 (191)
T d2ngra_          82 FSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALT  161 (191)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTT
T ss_pred             cccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCC
Confidence            99999999988                                                             89999999


Q ss_pred             CCCchHHHHHHHHHHhcCCC
Q psy125          323 NYNFEKPFLWLARKLIGDPN  342 (385)
Q Consensus       323 ~~~v~~~f~~l~~~i~~~~~  342 (385)
                      |.||+++|+.+++.+++.+.
T Consensus       162 ~~~V~e~f~~l~~~~~~~~~  181 (191)
T d2ngra_         162 QKGLKNVFDEAILAALEPPE  181 (191)
T ss_dssp             CTTHHHHHHHHHHHHTSCCS
T ss_pred             CcCHHHHHHHHHHHHhcCcC
Confidence            99999999999999877644

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2.3e-25  Score=186.10  Aligned_cols=119  Identities=29%  Similarity=0.607  Sum_probs=113.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||||+++++.+.|...+.++.+.++....+.+.+..+.+.||||||+++|..+++.++++||++|+|
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v   85 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   85 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.+|+.                                                |+||||++|.||+++|.+|++
T Consensus        86 ~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~  165 (194)
T d2bcgy1          86 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR  165 (194)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             EeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHH
Confidence            99999999998                                                899999999999999999999


Q ss_pred             HHhcCCC
Q psy125          336 KLIGDPN  342 (385)
Q Consensus       336 ~i~~~~~  342 (385)
                      +|.....
T Consensus       166 ~i~~~~~  172 (194)
T d2bcgy1         166 QIKESMS  172 (194)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHhh
Confidence            9977543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.1e-25  Score=180.80  Aligned_cols=115  Identities=29%  Similarity=0.493  Sum_probs=107.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      +.+||+++|.+|||||+|+++|+.++|...+.++++..+ ...+..++..+.+.+||++|++.+..+++.|++++|++|+
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   80 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEE
Confidence            468999999999999999999999999999999998555 5566788889999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHH
Q psy125          303 MFDVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       303 v~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |||++++.||++                                                  |+|||||+|.||+++|.+
T Consensus        81 v~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~  160 (167)
T d1c1ya_          81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             eeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHH
Confidence            999999999999                                                  899999999999999999


Q ss_pred             HHHHHh
Q psy125          333 LARKLI  338 (385)
Q Consensus       333 l~~~i~  338 (385)
                      |+++|.
T Consensus       161 l~~~i~  166 (167)
T d1c1ya_         161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            999985

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-25  Score=181.30  Aligned_cols=115  Identities=33%  Similarity=0.625  Sum_probs=110.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+++++.++|...+.++.+.++....+..++..+.+.+|||+|++++..++..+++++|++|+|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            48999999999999999999999999999999998999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||+.                                                |+|||||+|.||+++|.+|++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~  163 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK  163 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999988                                                899999999999999999999


Q ss_pred             HHh
Q psy125          336 KLI  338 (385)
Q Consensus       336 ~i~  338 (385)
                      +|.
T Consensus       164 ~i~  166 (166)
T d1z0fa1         164 KIY  166 (166)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            873

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.9e-25  Score=179.62  Aligned_cols=116  Identities=34%  Similarity=0.663  Sum_probs=111.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+++|+.+.|...+.+|++.+........++..+.+.+|||+|++++..++..++++++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            47999999999999999999999999999999999999988888999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-----------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          304 FDVTSRITYKN-----------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       304 ~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      ||++++.||++                                               |+||||++|.||+++|++|+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~  161 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK  161 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHH
Confidence            99999999988                                               8999999999999999999999


Q ss_pred             Hhc
Q psy125          337 LIG  339 (385)
Q Consensus       337 i~~  339 (385)
                      +++
T Consensus       162 ~lq  164 (164)
T d1z2aa1         162 HLQ  164 (164)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            874

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.8e-25  Score=179.69  Aligned_cols=116  Identities=32%  Similarity=0.682  Sum_probs=100.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCcccc-ccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      .+||+++|+++||||+|+++|+.++|.. .+.++++.+.....+..++..+.+.||||||++++..++..+++++|++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            5899999999999999999999998754 456677888888889999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.||+.                                                |+|||||+|.||+++|++|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999988                                                99999999999999999999


Q ss_pred             HHHhc
Q psy125          335 RKLIG  339 (385)
Q Consensus       335 ~~i~~  339 (385)
                      ++|.+
T Consensus       166 ~~i~k  170 (170)
T d2g6ba1         166 KELKR  170 (170)
T ss_dssp             HHHHC
T ss_pred             HHcCC
Confidence            99853

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.4e-25  Score=184.02  Aligned_cols=117  Identities=32%  Similarity=0.641  Sum_probs=84.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+++++.+.|...+.++++.+.....+.+++..+.+.+|||||++.|..+++.++++++++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v   85 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   85 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||+.                                                |+||||++|.||+++|.+|++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~  165 (173)
T d2fu5c1          86 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR  165 (173)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHH
T ss_pred             EECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999988                                                899999999999999999999


Q ss_pred             HHhcC
Q psy125          336 KLIGD  340 (385)
Q Consensus       336 ~i~~~  340 (385)
                      .|..+
T Consensus       166 ~i~~k  170 (173)
T d2fu5c1         166 DIKAK  170 (173)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.9e-25  Score=180.88  Aligned_cols=122  Identities=31%  Similarity=0.570  Sum_probs=115.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|++++..++|...+.++.+.+...+.+..++..+.+.||||||++++..++..++++++++|+
T Consensus         6 ~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~   85 (177)
T d1x3sa1           6 TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL   85 (177)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            45899999999999999999999999999999999888888888899999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.+|+.                                                |+||||++|.||+++|++|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~  165 (177)
T d1x3sa1          86 VYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELV  165 (177)
T ss_dssp             EEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999988                                                89999999999999999999


Q ss_pred             HHHhcCCCcc
Q psy125          335 RKLIGDPNLE  344 (385)
Q Consensus       335 ~~i~~~~~~~  344 (385)
                      +++++.++..
T Consensus       166 ~~l~~~p~l~  175 (177)
T d1x3sa1         166 EKIIQTPGLW  175 (177)
T ss_dssp             HHHHTSGGGT
T ss_pred             HHHccCcccc
Confidence            9999987653

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.1e-24  Score=175.54  Aligned_cols=159  Identities=20%  Similarity=0.314  Sum_probs=128.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCC-CcccccceeeeEEEEEEeCCeeEEEEEEeCCCc---cccccchhhhhccCcE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQ---EKFGGLRDGYYIQGQC   84 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~-~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~---~~~~~~~~~~~~~~d~   84 (385)
                      .|||+++|.+|||||||+++|.++.+. ....++.+..........++..+.+.+||+++.   +.+  +...+++++|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            589999999999999999998876654 344556676667777788888999999998754   333  45667899999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHHh--cCCCCEEEEEeCCCCcchhh--hHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVRV--CENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~~--~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      +|+|||++++.++.++..|...+...  ..+.|+++|+||+|+...+.  ..+...++...+.+++++||++|.|++++|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            99999999999999999998877652  35799999999999876433  345566778888999999999999999999


Q ss_pred             HHHHHHHhc
Q psy125          161 LWLARKLIG  169 (385)
Q Consensus       161 ~~i~~~l~~  169 (385)
                      ..|++.+..
T Consensus       161 ~~l~~~i~~  169 (172)
T d2g3ya1         161 EGIVRQVRL  169 (172)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998743

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4.2e-24  Score=175.82  Aligned_cols=160  Identities=22%  Similarity=0.362  Sum_probs=132.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      .+||+++|.+|||||||+++++.+.+...+.++.+..... ....+...+.+.+||++|++.+...+..++.++|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccc-cccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            4799999999999999999999999998888888755444 456678899999999999999988889999999999999


Q ss_pred             EeCCChhhhhcHHHH-HHHHHHhcCCCCEEEEEeCCCCcchh--------------hhHHHHHHHHhcC-CeEEEEcCCC
Q psy125           89 FDVTSRITYKNVPNW-HRDLVRVCENIPIVLCGNKVDIKDRK--------------VKAKSIVFHRKKN-LQYYDISAKS  152 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~-~~~l~~~~~~~~~ilv~nK~Dl~~~~--------------~~~~~~~~~~~~~-~~~~~~Sa~~  152 (385)
                      ||++++.+|+.+..| ...+.....+.|+++|+||+|+....              ...+...+++..+ ..++++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999987764 44455566789999999999985421              1234555666655 5899999999


Q ss_pred             CC-ChHHHHHHHHHHHhc
Q psy125          153 NY-NFEKPFLWLARKLIG  169 (385)
Q Consensus       153 ~~-gi~~l~~~i~~~l~~  169 (385)
                      +. |++++|..+++.++.
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999998764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=6.2e-25  Score=178.99  Aligned_cols=116  Identities=29%  Similarity=0.548  Sum_probs=110.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      +.+||+++|.+|||||+|++++..++|...+.+|.+.++.......+.....+.+|||+|++++..++..++++++++|+
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   82 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAII   82 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEE
Confidence            46899999999999999999999999999999999999988888888889999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.||++                                                |+|||||+|.||+++|.+|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~  162 (167)
T d1z0ja1          83 VYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEIS  162 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence            999999999998                                                89999999999999999999


Q ss_pred             HHHh
Q psy125          335 RKLI  338 (385)
Q Consensus       335 ~~i~  338 (385)
                      ++|.
T Consensus       163 ~~i~  166 (167)
T d1z0ja1         163 RRIP  166 (167)
T ss_dssp             HHCC
T ss_pred             HhCC
Confidence            9984

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.3e-25  Score=179.42  Aligned_cols=114  Identities=32%  Similarity=0.626  Sum_probs=109.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+|+++++.++|...+.++++.+........++..+.+.+|||+|++++...+..++++++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            68999999999999999999999999999999998988888888888999999999999999999999999999999999


Q ss_pred             eCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          305 DVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       305 d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      |++++.||++                                                |+|||||+|.||+++|.+|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            9999999999                                                8999999999999999999998


Q ss_pred             Hh
Q psy125          337 LI  338 (385)
Q Consensus       337 i~  338 (385)
                      |+
T Consensus       161 l~  162 (164)
T d1yzqa1         161 LP  162 (164)
T ss_dssp             SC
T ss_pred             hC
Confidence            85

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.3e-24  Score=177.39  Aligned_cols=118  Identities=31%  Similarity=0.504  Sum_probs=108.7

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      .+.+||+++|++|||||+|+++|+.+.|...+.++.+..+ .+.+..++..+.+.+||++|++++..+++.|++++++++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            3579999999999999999999999999999999987554 566778999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhhh-------------------------------------------------hheeccccCC-CchHHHH
Q psy125          302 IMFDVTSRITYKN-------------------------------------------------YYDISAKSNY-NFEKPFL  331 (385)
Q Consensus       302 lv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~-~v~~~f~  331 (385)
                      +|||++|+.||++                                                 |+|||||+|. ||+++|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            9999999999998                                                 9999999985 9999999


Q ss_pred             HHHHHHhcC
Q psy125          332 WLARKLIGD  340 (385)
Q Consensus       332 ~l~~~i~~~  340 (385)
                      .|++.|.++
T Consensus       161 ~l~~~i~~~  169 (169)
T d1x1ra1         161 DLVRVIRQQ  169 (169)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhC
Confidence            999998753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.1e-25  Score=178.99  Aligned_cols=117  Identities=28%  Similarity=0.528  Sum_probs=109.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++|+.+.|...+.++. .+.....+.+++..+.+.+|||+|++++..++..++++++++|+
T Consensus         5 ~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~   83 (173)
T d2fn4a1           5 ETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLL   83 (173)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEE
T ss_pred             CeEEEEEECCCCcCHHHHHHHHHhCCCCccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhccceeeee
Confidence            56899999999999999999999999999999886 46667788889999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.||+.                                                 |+|||||+|.||+++|++|
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  163 (173)
T d2fn4a1          84 VFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQL  163 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             ecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHH
Confidence            999999999998                                                 8999999999999999999


Q ss_pred             HHHHhcC
Q psy125          334 ARKLIGD  340 (385)
Q Consensus       334 ~~~i~~~  340 (385)
                      ++.|.+.
T Consensus       164 ~~~i~k~  170 (173)
T d2fn4a1         164 VRAVRKY  170 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.6e-25  Score=178.38  Aligned_cols=117  Identities=32%  Similarity=0.618  Sum_probs=111.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+++++.+.|...+.++.+.+.....+......+.+.+|||+|++++..++..++++++++|+|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   85 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVV   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEE
Confidence            58999999999999999999999999999999999999888888899999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||++                                                |+|||||+|.||+++|.+|++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~  165 (170)
T d1r2qa_          86 YDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK  165 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHH
Confidence            99999999998                                                899999999999999999999


Q ss_pred             HHhcC
Q psy125          336 KLIGD  340 (385)
Q Consensus       336 ~i~~~  340 (385)
                      +|.++
T Consensus       166 ~i~~n  170 (170)
T d1r2qa_         166 KLPKN  170 (170)
T ss_dssp             TSCCC
T ss_pred             HHhhC
Confidence            88654

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.91  E-value=1.1e-24  Score=177.56  Aligned_cols=116  Identities=28%  Similarity=0.501  Sum_probs=105.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      +.+||+++|++|||||+|+++++.++|...+.+|.+.++ .+.+.+++..+.+.+||++|++++..++..++++++++|+
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLC   81 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEE
Confidence            468999999999999999999999999999999998665 4567789999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.||++                                                 |+|||||+|.||+++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l  161 (168)
T d1u8za_          82 VFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDL  161 (168)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            999999999988                                                 8999999999999999999


Q ss_pred             HHHHhc
Q psy125          334 ARKLIG  339 (385)
Q Consensus       334 ~~~i~~  339 (385)
                      +++|..
T Consensus       162 ~~~i~~  167 (168)
T d1u8za_         162 MREIRA  167 (168)
T ss_dssp             HHHHHT
T ss_pred             HHHHHC
Confidence            999865

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-23  Score=170.93  Aligned_cols=157  Identities=18%  Similarity=0.338  Sum_probs=124.5

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      ++|.+||+++|+.|||||||+++++.+.+.. ..++.+.++ .....+++..+.+.+|||+|+..     ..+++++|++
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~-----~~~~~~ad~~   74 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAV   74 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEE-EEEEEETTEEEEEEEEECSSCCC-----HHHHHHCSEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeE-EEEeecCceEEEEEEeecccccc-----ccccccccee
Confidence            4688999999999999999999999988754 445555544 44566788899999999999864     3478899999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHHh----cCCCCEEEEEeCCCCcchhh----hHHHHHHHH-hcCCeEEEEcCCCCCCh
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVRV----CENIPIVLCGNKVDIKDRKV----KAKSIVFHR-KKNLQYYDISAKSNYNF  156 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~~----~~~~~~ilv~nK~Dl~~~~~----~~~~~~~~~-~~~~~~~~~Sa~~~~gi  156 (385)
                      |+|||++++.+|+++..|+..+...    ..+.|+++|+||.|+.....    ..+...+.. ..+..++++||+++.|+
T Consensus        75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v  154 (175)
T d2bmja1          75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV  154 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred             EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence            9999999999999998888877543    24678999999888743211    234445543 34668999999999999


Q ss_pred             HHHHHHHHHHHhc
Q psy125          157 EKPFLWLARKLIG  169 (385)
Q Consensus       157 ~~l~~~i~~~l~~  169 (385)
                      +++|..+++.+..
T Consensus       155 ~~~F~~l~~~i~~  167 (175)
T d2bmja1         155 DRVFQEVAQKVVT  167 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987643

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.8e-24  Score=176.25  Aligned_cols=115  Identities=23%  Similarity=0.326  Sum_probs=107.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      +.+||+++|++|||||+|+++++.+.|...+.+|++.++ .+.+.+++..+.+.+|||+|++++..++..+++++|++|+
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYIL   81 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhh
Confidence            458999999999999999999999999999999998765 5677889999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.||++                                                 |+|||||+|.||+++|+.|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~l  161 (167)
T d1xtqa1          82 VYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHH
Confidence            999999999988                                                 8999999999999999999


Q ss_pred             HHHHh
Q psy125          334 ARKLI  338 (385)
Q Consensus       334 ~~~i~  338 (385)
                      ++++.
T Consensus       162 i~~~~  166 (167)
T d1xtqa1         162 ILEAE  166 (167)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            99875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.91  E-value=1.3e-23  Score=170.53  Aligned_cols=154  Identities=25%  Similarity=0.460  Sum_probs=125.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM   88 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV   88 (385)
                      ++||+++|++|||||||+++|.++.+...+.+|.|.+.....    .+.+.+.+||+||+..+...+..++.+++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~----~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT----KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEE----ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeee----eeeEEEEEeeccccccccccccccccccchhhcc
Confidence            589999999999999999999999988888888887655433    3578999999999998888899999999999999


Q ss_pred             EeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHH-----HHhcCCeEEEEcCCCCCChHHHHH
Q psy125           89 FDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVF-----HRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        89 ~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      ||+++..++.....|+..+..  ...+.|+++++||.|+.......+..+.     .......++++||++|.|+++.+.
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~  157 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ  157 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHH
Confidence            999999999888777777655  3468999999999998653322222221     122344789999999999999999


Q ss_pred             HHHHH
Q psy125          162 WLARK  166 (385)
Q Consensus       162 ~i~~~  166 (385)
                      +|.+.
T Consensus       158 ~l~~~  162 (164)
T d1zd9a1         158 WLIQH  162 (164)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            98764

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-24  Score=177.43  Aligned_cols=115  Identities=24%  Similarity=0.444  Sum_probs=106.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+++|+.+.|...+.+|++..+ .....+++..+.+.+|||+|++++...+..++++++++|+|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            58999999999999999999999999999999998554 44567888899999999999999999999999999999999


Q ss_pred             EeCCChhhhhh--------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          304 FDVTSRITYKN--------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       304 ~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      ||++++.||++                                                  |+|||||+|.||+++|+.|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            99999999998                                                  8999999999999999999


Q ss_pred             HHHHhc
Q psy125          334 ARKLIG  339 (385)
Q Consensus       334 ~~~i~~  339 (385)
                      ++.+.+
T Consensus       161 ~~~~~~  166 (171)
T d2erxa1         161 LNLEKR  166 (171)
T ss_dssp             HHTCCS
T ss_pred             HHHHHH
Confidence            986643

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.91  E-value=2.5e-23  Score=169.03  Aligned_cols=157  Identities=17%  Similarity=0.267  Sum_probs=121.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+++|++|||||||+++|.++ ....+.++.|....    ..+.+.+.+.+||++|++.++..+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~-~~~~~~~t~~~~~~----~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGE-DVDTISPTLGFNIK----TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC-CCSSCCCCSSEEEE----EEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCC-CCCcccceEeeeee----eccccccceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            4689999999999999999996654 44556666665443    334467899999999999888888999999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      |+|+.+..++.....++..+..  ...+.|+++|+||+|+.+.....+.....     ......++++||++|.|+++.+
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~  155 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI  155 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHH
Confidence            9999999888776666555443  34678999999999987544333322221     1223478999999999999999


Q ss_pred             HHHHHHHhc
Q psy125          161 LWLARKLIG  169 (385)
Q Consensus       161 ~~i~~~l~~  169 (385)
                      ++|...+..
T Consensus       156 ~~l~~~i~~  164 (165)
T d1ksha_         156 DWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999988754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.4e-24  Score=175.54  Aligned_cols=114  Identities=18%  Similarity=0.213  Sum_probs=89.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|.+|||||+|++++....+. .+.++.+.+ ..+.+.+++..+.+.+|||+|++++..++..|++++|++|+||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~~~-~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEE-EEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccC-CcCCeeeee-ecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            79999999999999999998876654 344555444 4566778999999999999999999999999999999999999


Q ss_pred             eCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          305 DVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       305 d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      |++++.||++                                                 |+|||||+|.||+++|.+|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            9999999998                                                 899999999999999999999


Q ss_pred             HHhcC
Q psy125          336 KLIGD  340 (385)
Q Consensus       336 ~i~~~  340 (385)
                      +|..+
T Consensus       160 ~i~~~  164 (168)
T d2gjsa1         160 QIRLR  164 (168)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.2e-24  Score=175.85  Aligned_cols=116  Identities=25%  Similarity=0.387  Sum_probs=107.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|+++|+.+.|...+.+|++. ...+.+.+++..+.+.+||++|++.+..+++.+++++|++|+|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            479999999999999999999999999999999864 4555677888999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------------------hheecccc
Q psy125          304 FDVTSRITYKN-------------------------------------------------------------YYDISAKS  322 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------------------~~e~Sak~  322 (385)
                      ||++++.||++                                                             |+|||||+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999998                                                             89999999


Q ss_pred             CCC-chHHHHHHHHHHhcC
Q psy125          323 NYN-FEKPFLWLARKLIGD  340 (385)
Q Consensus       323 ~~~-v~~~f~~l~~~i~~~  340 (385)
                      |.| |+++|+.+++.++++
T Consensus       161 ~~n~i~~~F~~~~~~~l~k  179 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVNK  179 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHhcC
Confidence            986 999999999998864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-24  Score=175.37  Aligned_cols=115  Identities=27%  Similarity=0.520  Sum_probs=107.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      +.+||+++|++|||||+|+++++.+.|...+.++++ +.......+++..+.+.+||++|++.+..++..++++++++++
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   80 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhcccceee
Confidence            469999999999999999999999999999999987 4556677888899999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.||.+                                                 |+|||||+|.||+++|.+|
T Consensus        81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i  160 (167)
T d1kaoa_          81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             eeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHH
Confidence            999999999998                                                 8999999999999999999


Q ss_pred             HHHHh
Q psy125          334 ARKLI  338 (385)
Q Consensus       334 ~~~i~  338 (385)
                      +++|.
T Consensus       161 ~~~i~  165 (167)
T d1kaoa_         161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            99875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.6e-24  Score=174.99  Aligned_cols=117  Identities=32%  Similarity=0.634  Sum_probs=110.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||+|++++..++|...+.++.+.+.....+..++....+.+|||||++++..+++.++++++++|+|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            48999999999999999999999999999999999888888888888999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||.+++.+|++                                                |+||||++|.||+++|.+|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~  164 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR  164 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence            99999999998                                                899999999999999999999


Q ss_pred             HHhcC
Q psy125          336 KLIGD  340 (385)
Q Consensus       336 ~i~~~  340 (385)
                      +++++
T Consensus       165 ~i~~~  169 (174)
T d2bmea1         165 KILNK  169 (174)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.9e-24  Score=174.60  Aligned_cols=117  Identities=30%  Similarity=0.587  Sum_probs=106.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|++|||||+|+++++.++|...+.++.+.+.........+..+.+.+||++|++.+..+++.+++++|++|+|
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv   82 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV   82 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEE
Confidence            48999999999999999999999999999999988888888888888899999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||++                                                |+||||++|.||+++|.+|++
T Consensus        83 ~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~  162 (173)
T d2a5ja1          83 YDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAK  162 (173)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHH
T ss_pred             EeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999998                                                899999999999999999999


Q ss_pred             HHhcC
Q psy125          336 KLIGD  340 (385)
Q Consensus       336 ~i~~~  340 (385)
                      +|.++
T Consensus       163 ~i~~~  167 (173)
T d2a5ja1         163 EIYRK  167 (173)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6e-24  Score=173.18  Aligned_cols=114  Identities=28%  Similarity=0.430  Sum_probs=103.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|++|||||+|+++|+.+.|...+.||++.++.. .+..++..+.+.||||+|++.+. ....|+++++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            4899999999999999999999999999999999877654 45568888999999999998874 556799999999999


Q ss_pred             EeCCChhhhhh-------------------------------------------------hheeccccCC-CchHHHHHH
Q psy125          304 FDVTSRITYKN-------------------------------------------------YYDISAKSNY-NFEKPFLWL  333 (385)
Q Consensus       304 ~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~-~v~~~f~~l  333 (385)
                      ||++++.||++                                                 |+|||||+|. ||+++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            99999999988                                                 8999999998 699999999


Q ss_pred             HHHHhc
Q psy125          334 ARKLIG  339 (385)
Q Consensus       334 ~~~i~~  339 (385)
                      +++|.+
T Consensus       160 ~~~i~~  165 (168)
T d2atva1         160 CREVRR  165 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999865

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.6e-24  Score=173.16  Aligned_cols=116  Identities=30%  Similarity=0.539  Sum_probs=104.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++|+.+.|...+.+|.+ +.....+.+++..+.+.+||++|++++...++.+++++|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            358999999999999999999999999999999987 5567778889999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHHHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPFLWL  333 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f~~l  333 (385)
                      |||++++.||+.                                                 |+|||||+|.||+++|..|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            999999999998                                                 8999999999999999999


Q ss_pred             HHHHhc
Q psy125          334 ARKLIG  339 (385)
Q Consensus       334 ~~~i~~  339 (385)
                      ++.|.+
T Consensus       163 ~~~i~k  168 (171)
T d2erya1         163 VRVIRK  168 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998854

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.90  E-value=4.3e-23  Score=169.50  Aligned_cols=157  Identities=19%  Similarity=0.335  Sum_probs=121.6

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcE
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQC   84 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~   84 (385)
                      ...+.+||+++|++|||||||+|+|.++.+. ...++.|.+....    ..+++.+.+||++|.+.++..+..++..+|+
T Consensus        12 ~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~i----~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~   86 (176)
T d1fzqa_          12 APDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSV----QSQGFKLNVWDIGGQRKIRPYWRSYFENTDI   86 (176)
T ss_dssp             CCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEE----EETTEEEEEEECSSCGGGHHHHHHHHTTCSE
T ss_pred             CCCCEEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeEEEe----ccCCeeEeEeeccccccchhHHHHHhhccce
Confidence            3456799999999999999999997776653 4445566554433    2356889999999999988889999999999


Q ss_pred             EEEEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHH-----HHhcCCeEEEEcCCCCCChH
Q psy125           85 AIIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVF-----HRKKNLQYYDISAKSNYNFE  157 (385)
Q Consensus        85 illV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~  157 (385)
                      +++|||+++..++..+..+...+..  ...+.|+++++||+|+..........+.     .......++++||++|.|++
T Consensus        87 ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~  166 (176)
T d1fzqa_          87 LIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ  166 (176)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             eEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHH
Confidence            9999999999999887777766554  2357899999999999754332222221     12234478999999999999


Q ss_pred             HHHHHHHHH
Q psy125          158 KPFLWLARK  166 (385)
Q Consensus       158 ~l~~~i~~~  166 (385)
                      +++++|++.
T Consensus       167 e~~~~l~~~  175 (176)
T d1fzqa_         167 DGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999998874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-23  Score=171.83  Aligned_cols=116  Identities=31%  Similarity=0.604  Sum_probs=107.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|++|||||||+++++.+.|...+.++.+.+.....+..++..+.+.||||+|+++|..++..++++++++|+|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            48999999999999999999999999999999998888888888999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHHH
Q psy125          304 FDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLAR  335 (385)
Q Consensus       304 ~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~~  335 (385)
                      ||++++.||+.                                                |+||||++|.||+++|.++++
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~  163 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT  163 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHH
Confidence            99999999998                                                899999999999999999999


Q ss_pred             HHhc
Q psy125          336 KLIG  339 (385)
Q Consensus       336 ~i~~  339 (385)
                      +|.+
T Consensus       164 ~i~~  167 (175)
T d2f9la1         164 EIYR  167 (175)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-23  Score=170.45  Aligned_cols=117  Identities=26%  Similarity=0.487  Sum_probs=107.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      +.+||+++|++|||||||+++|+.+.|...+.++++.++... +...+..+.+.+||++|++.+...++.++++++++++
T Consensus         2 ~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~ii   80 (166)
T d1ctqa_           2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccce
Confidence            358999999999999999999999999999999998766544 5667888999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          303 MFDVTSRITYKN------------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      |||++++.||++                                                |+|||||+|.||+++|.+|+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~  160 (166)
T d1ctqa_          81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             eecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHH
Confidence            999999999988                                                89999999999999999999


Q ss_pred             HHHhcC
Q psy125          335 RKLIGD  340 (385)
Q Consensus       335 ~~i~~~  340 (385)
                      ++|.++
T Consensus       161 ~~i~~~  166 (166)
T d1ctqa_         161 REIRQH  166 (166)
T ss_dssp             HHHHTC
T ss_pred             HHHHhC
Confidence            998653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3e-23  Score=169.71  Aligned_cols=112  Identities=19%  Similarity=0.349  Sum_probs=98.7

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      .+.+||+++|+++||||+|+++|+.+.|.. +.++.+.+ ..+.+.+++..+.+.||||+|+.++     .|++++|++|
T Consensus         3 ~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~-~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~i   75 (175)
T d2bmja1           3 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVI   75 (175)
T ss_dssp             CCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEE-EEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEE
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCcccee-EEEEeecCceEEEEEEeeccccccc-----ccccccceeE
Confidence            356999999999999999999999998855 45665544 4667788999999999999998764     4899999999


Q ss_pred             EEEeCCChhhhhh------------------------------------------------------hheeccccCCCch
Q psy125          302 IMFDVTSRITYKN------------------------------------------------------YYDISAKSNYNFE  327 (385)
Q Consensus       302 lv~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v~  327 (385)
                      +|||++++.||++                                                      |+||||++|.||+
T Consensus        76 lVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~  155 (175)
T d2bmja1          76 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVD  155 (175)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHH
T ss_pred             EEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHH
Confidence            9999999999988                                                      8999999999999


Q ss_pred             HHHHHHHHHHhcC
Q psy125          328 KPFLWLARKLIGD  340 (385)
Q Consensus       328 ~~f~~l~~~i~~~  340 (385)
                      ++|..+++++...
T Consensus       156 ~~F~~l~~~i~~~  168 (175)
T d2bmja1         156 RVFQEVAQKVVTL  168 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-23  Score=174.64  Aligned_cols=117  Identities=32%  Similarity=0.565  Sum_probs=106.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCC----------eeEEEEEeeCCCccccCcccccc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR----------GAIRFNVWDTAGQEKFGGLRDGY  293 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~l~i~Dt~G~~~~~~~~~~~  293 (385)
                      .+||+++|.+|||||+|+++++.+.|...+.++.+.++....+..++          ..+.+.+|||+|+++|..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            48999999999999999999999999999999998888777765543          34678999999999999999999


Q ss_pred             cccCcEEEEEEeCCChhhhhh-------------------------------------------------hheeccccCC
Q psy125          294 YIQGQCAIIMFDVTSRITYKN-------------------------------------------------YYDISAKSNY  324 (385)
Q Consensus       294 ~~~~~~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~  324 (385)
                      +++++++|+|||++++.||+.                                                 |+||||++|.
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~  164 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ  164 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            999999999999999999987                                                 8999999999


Q ss_pred             CchHHHHHHHHHHhcC
Q psy125          325 NFEKPFLWLARKLIGD  340 (385)
Q Consensus       325 ~v~~~f~~l~~~i~~~  340 (385)
                      ||+++|++|++.|.++
T Consensus       165 ~i~e~f~~l~~~i~~k  180 (186)
T d2f7sa1         165 NVEKAVETLLDLIMKR  180 (186)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999998754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.89  E-value=1.4e-22  Score=167.34  Aligned_cols=158  Identities=20%  Similarity=0.295  Sum_probs=118.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEE
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA   85 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~i   85 (385)
                      ..+.+||+++|++|||||||+++|..+.+ ....++.+......    ..+.+.+.+||++|++.+...+..++..++++
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~-~~~~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   88 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETL----SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAV   88 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEE----EETTEEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCC-CccccccceEEEEE----eeCCEEEEEEecccccccchhHHhhhccceeE
Confidence            35689999999999999999999666544 44456666544333    33568899999999999999999999999999


Q ss_pred             EEEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHH-----HHhcCCeEEEEcCCCCCChHH
Q psy125           86 IIMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVF-----HRKKNLQYYDISAKSNYNFEK  158 (385)
Q Consensus        86 llV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~  158 (385)
                      ++|+|+++..++.....|+..+..  ...+.|+++++||+|+.......+....     .......++++||++|.|+++
T Consensus        89 i~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  168 (182)
T d1moza_          89 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITE  168 (182)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHH
T ss_pred             EEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHH
Confidence            999999999998877777666544  2356899999999998653322222221     122344789999999999999


Q ss_pred             HHHHHHHHHh
Q psy125          159 PFLWLARKLI  168 (385)
Q Consensus       159 l~~~i~~~l~  168 (385)
                      ++.+|.+.+.
T Consensus       169 ~~~~l~~~i~  178 (182)
T d1moza_         169 GLDWLIDVIK  178 (182)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.88  E-value=1.7e-22  Score=165.32  Aligned_cols=155  Identities=23%  Similarity=0.325  Sum_probs=119.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+++|++|||||||+++|+.+.+ ....++.+...    .......+.+.+||+||...++..+..++.++++++
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~-~~~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   84 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI   84 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCC-EEEEEETTEEE----EEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCC-CCccceeeeeE----EEeeccceeeEEecCCCcchhhhHHHhhhcccceEE
Confidence            4679999999999999999999776554 33334444433    333446789999999999998888899999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHH-----HHhcCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVF-----HRKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|+++..++..+..|+..+..  ...+.|+++++||+|+.+.....+....     +......++++||++|.|+++.
T Consensus        85 ~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~  164 (173)
T d1e0sa_          85 FVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEG  164 (173)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             EEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHH
Confidence            99999999999888777766554  2357899999999998654332222221     1122446889999999999999


Q ss_pred             HHHHHHH
Q psy125          160 FLWLARK  166 (385)
Q Consensus       160 ~~~i~~~  166 (385)
                      +.+|...
T Consensus       165 ~~~l~~~  171 (173)
T d1e0sa_         165 LTWLTSN  171 (173)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=1e-22  Score=168.39  Aligned_cols=118  Identities=32%  Similarity=0.652  Sum_probs=111.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||||+++++.+.|...+.+|++.+...+.....+..+.+.+|||+|+..+...+..++..++++++|
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   81 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLV   81 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEe
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhhh----------------------------------------------------hheeccccCCCchHHHH
Q psy125          304 FDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       304 ~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      ||.+++.+|++                                                    |+||||++|.||+++|+
T Consensus        82 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~  161 (184)
T d1vg8a_          82 FDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQ  161 (184)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHH
T ss_pred             ecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHH
Confidence            99999999986                                                    89999999999999999


Q ss_pred             HHHHHHhcCC
Q psy125          332 WLARKLIGDP  341 (385)
Q Consensus       332 ~l~~~i~~~~  341 (385)
                      +|++.+.++.
T Consensus       162 ~l~~~i~~~~  171 (184)
T d1vg8a_         162 TIARNALKQE  171 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcc
Confidence            9999987753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=3.9e-23  Score=169.58  Aligned_cols=117  Identities=30%  Similarity=0.610  Sum_probs=93.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeC-CeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      .+||+++|++|||||||+++|+.++|...+.++.+.+......... .....+.+|||+|++++...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            4899999999999999999999999999999998877666655543 455778999999999999999999999999999


Q ss_pred             EEeCCChhhhhh------------------------------------------------------hheeccccCCCchH
Q psy125          303 MFDVTSRITYKN------------------------------------------------------YYDISAKSNYNFEK  328 (385)
Q Consensus       303 v~d~~~~~s~~~------------------------------------------------------~~e~Sak~~~~v~~  328 (385)
                      |||++++.||+.                                                      |+||||++|.||++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            999999999987                                                      89999999999999


Q ss_pred             HHHHHHHHHhcC
Q psy125          329 PFLWLARKLIGD  340 (385)
Q Consensus       329 ~f~~l~~~i~~~  340 (385)
                      +|++|++.++++
T Consensus       162 ~f~~l~~~~l~~  173 (175)
T d1ky3a_         162 AFEEIARSALQQ  173 (175)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=166.30  Aligned_cols=117  Identities=32%  Similarity=0.671  Sum_probs=107.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||+|+++++.+.|...+.+|++.+........++..+.+.+||++|+.++...++.++..++++++
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~   84 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLL   84 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEE
Confidence            35899999999999999999999999999999999999888888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      |||++++.||+.                                                    |+||||++|.||+++|
T Consensus        85 ~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f  164 (174)
T d1wmsa_          85 TFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAF  164 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHH
T ss_pred             EEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHH
Confidence            999999999987                                                    8999999999999999


Q ss_pred             HHHHHHHhc
Q psy125          331 LWLARKLIG  339 (385)
Q Consensus       331 ~~l~~~i~~  339 (385)
                      ++|+++|+.
T Consensus       165 ~~l~~~il~  173 (174)
T d1wmsa_         165 EEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999874

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2.1e-22  Score=164.50  Aligned_cols=115  Identities=19%  Similarity=0.325  Sum_probs=97.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCcccc-ccccceeeEEEEEEEEeCCeeEEEEEeeCC---CccccCcccccccccCcE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEK-KYVATLGVEVHPLVFHTNRGAIRFNVWDTA---GQEKFGGLRDGYYIQGQC  299 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~---G~~~~~~~~~~~~~~~~~  299 (385)
                      .+||+++|.+|||||+|+++|....+.. ...++.+.+...+.+.+++..+.+.+||++   |+++|  ++..|++++|+
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            4899999999999999999998776543 345666777888888899999888888864   66666  56779999999


Q ss_pred             EEEEEeCCChhhhhh-------------------------------------------------hheeccccCCCchHHH
Q psy125          300 AIIMFDVTSRITYKN-------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       300 ~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      +|+|||++++.||++                                                 |+|||||+|.||+++|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            999999999999997                                                 8999999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      .+|+++|..+
T Consensus       161 ~~l~~~i~~r  170 (172)
T d2g3ya1         161 EGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998653

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=5.2e-22  Score=163.17  Aligned_cols=160  Identities=18%  Similarity=0.113  Sum_probs=115.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccch--------hhhhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR--------DGYYI   80 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~--------~~~~~   80 (385)
                      ...|+|+|.+|||||||+|+|++.. ........++|+..........+..+.+|||||........        ...+.
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSC-CSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC-ceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence            4579999999999999999977654 44455677777777666666667889999999985433322        33467


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHh-cCCeEEEEcCCCCCChHHH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRK-KNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~gi~~l  159 (385)
                      ++|++|+|+|++++..... ..+...+.....+.|+++|+||+|+...... ....+... ....++++||+++.|++++
T Consensus        84 ~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~iSA~~~~gi~~L  161 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED-ELVARALKPLVGKVPILLVGNKLDAAKYPEE-AMKAYHELLPEAEPRMLSALDERQVAEL  161 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH-HHHHHHHGGGTTTSCEEEEEECGGGCSSHHH-HHHHHHHTSTTSEEEECCTTCHHHHHHH
T ss_pred             cccceeeeechhhhhcccc-cchhhheeccccchhhhhhhcccccccCHHH-HHHHHHhhcccCceEEEecCCCCCHHHH
Confidence            8999999999987644332 2344455445568899999999998654321 11222222 2458899999999999999


Q ss_pred             HHHHHHHHhcCC
Q psy125          160 FLWLARKLIGDP  171 (385)
Q Consensus       160 ~~~i~~~l~~~~  171 (385)
                      +..|++.+...|
T Consensus       162 ~~~i~~~lpe~p  173 (178)
T d1wf3a1         162 KADLLALMPEGP  173 (178)
T ss_dssp             HHHHHTTCCBCC
T ss_pred             HHHHHHhCCCCC
Confidence            999998875543

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.86  E-value=3.1e-22  Score=162.26  Aligned_cols=110  Identities=26%  Similarity=0.520  Sum_probs=100.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      ++||+++|++|||||+|++++..+++...+.+|.|.+.....  .  ..+.+.+||+||++.+...+..++.+++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~--~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT--K--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEE--E--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeee--e--eeEEEEEeeccccccccccccccccccchhhcc
Confidence            589999999999999999999999999999999987665432  2  457789999999999999999999999999999


Q ss_pred             EeCCChhhhhh----------------------------------------------------hheeccccCCCchHHHH
Q psy125          304 FDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       304 ~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      ||++++.+|++                                                    |+||||++|.||+++|+
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~  157 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ  157 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHH
Confidence            99999999987                                                    79999999999999999


Q ss_pred             HHHHHH
Q psy125          332 WLARKL  337 (385)
Q Consensus       332 ~l~~~i  337 (385)
                      ||++++
T Consensus       158 ~l~~~~  163 (164)
T d1zd9a1         158 WLIQHS  163 (164)
T ss_dssp             HHHHTC
T ss_pred             HHHHcc
Confidence            999864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.86  E-value=2.9e-21  Score=155.59  Aligned_cols=153  Identities=22%  Similarity=0.275  Sum_probs=119.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEE
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~   89 (385)
                      +||+|+|++|||||||+|+|+++.+...+......     ....+...+.+.+||++|...+......++.+++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            59999999999999999999888766554433322     2344557789999999999988888889999999999999


Q ss_pred             eCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHH-----HHHhcCCeEEEEcCCCCCChHHHHHH
Q psy125           90 DVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIV-----FHRKKNLQYYDISAKSNYNFEKPFLW  162 (385)
Q Consensus        90 d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~~~  162 (385)
                      |+.++.++.....|...+..  .....|+++++||.|+.......+...     +....+..++++||++|.|+++++++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            99999998887777766654  335788999999999865433222221     22334558999999999999999999


Q ss_pred             HHHHH
Q psy125          163 LARKL  167 (385)
Q Consensus       163 i~~~l  167 (385)
                      |++.+
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.86  E-value=1.5e-21  Score=158.37  Aligned_cols=111  Identities=21%  Similarity=0.406  Sum_probs=97.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||||++++..+.+ ..+.+|.|......    +...+.+.+|||+|++.++..+..++++++++++|
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~~----~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v   76 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKTL----EHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWV   76 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEEE----EETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeeec----cccccceeeeecCcchhhhhHHHhhhhhhhcceee
Confidence            58999999999999999999876654 56778877554432    34567899999999999999999999999999999


Q ss_pred             EeCCChhhhhh----------------------------------------------------hheeccccCCCchHHHH
Q psy125          304 FDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       304 ~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      ||++|+.+|.+                                                    |++|||++|.||+++|+
T Consensus        77 ~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~  156 (165)
T d1ksha_          77 VDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGID  156 (165)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred             eecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHH
Confidence            99999999987                                                    78999999999999999


Q ss_pred             HHHHHHhc
Q psy125          332 WLARKLIG  339 (385)
Q Consensus       332 ~l~~~i~~  339 (385)
                      ||+++|.+
T Consensus       157 ~l~~~i~~  164 (165)
T d1ksha_         157 WLLDDISS  164 (165)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            99999865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.3e-21  Score=158.74  Aligned_cols=111  Identities=32%  Similarity=0.597  Sum_probs=102.0

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc-ccccccccCcEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-LRDGYYIQGQCAII  302 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~~~~~~~~~~il  302 (385)
                      .+||+++|.+|||||+|+++|+.++|...+.++.+.....+..........+.+||++|...+.. .++.|++++|++|+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~il   81 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEE
Confidence            58999999999999999999999999999999999888888888999999999999999877654 56789999999999


Q ss_pred             EEeCCChhhhhh-------------------------------------------------hheecccc---CCCchHHH
Q psy125          303 MFDVTSRITYKN-------------------------------------------------YYDISAKS---NYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~-------------------------------------------------~~e~Sak~---~~~v~~~f  330 (385)
                      |||++++.||++                                                 |+|||||+   |.||+++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F  161 (165)
T d1z06a1          82 VYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIF  161 (165)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHH
T ss_pred             EEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHH
Confidence            999999999998                                                 89999997   46999999


Q ss_pred             HHHH
Q psy125          331 LWLA  334 (385)
Q Consensus       331 ~~l~  334 (385)
                      .+||
T Consensus       162 ~~lA  165 (165)
T d1z06a1         162 MTLA  165 (165)
T ss_dssp             HHHC
T ss_pred             HHhC
Confidence            9885

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.84  E-value=1.5e-21  Score=160.10  Aligned_cols=111  Identities=21%  Similarity=0.421  Sum_probs=95.6

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||||++++..+.|.. +.++.|.+....    ....+.+.+||++|++.++..+..+++++|++|
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~-~~~~~~~~~~~i----~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii   88 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLASEDISH-ITPTQGFNIKSV----QSQGFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCCEE-EEEETTEEEEEE----EETTEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHhcCCCCc-ceeeeeeeEEEe----ccCCeeEeEeeccccccchhHHHHHhhccceeE
Confidence            356999999999999999999998887754 445566554432    224578899999999999999999999999999


Q ss_pred             EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125          302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      +|||++++.+|++                                                    |++|||++|.||+|+
T Consensus        89 ~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~  168 (176)
T d1fzqa_          89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDG  168 (176)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence            9999999999987                                                    789999999999999


Q ss_pred             HHHHHHHH
Q psy125          330 FLWLARKL  337 (385)
Q Consensus       330 f~~l~~~i  337 (385)
                      |+||+++|
T Consensus       169 ~~~l~~~i  176 (176)
T d1fzqa_         169 MNWVCKNV  176 (176)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHhcC
Confidence            99999864

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.83  E-value=5.5e-21  Score=157.57  Aligned_cols=113  Identities=25%  Similarity=0.384  Sum_probs=93.7

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ...+||+++|.+|||||||++++..+.+. .+.+|.+.......    ...+.+.+||++|++.++.++..+++++++++
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii   89 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLS----YKNLKLNVWDLGGQTSIRPYWRCYYADTAAVI   89 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEEE----ETTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEEEe----eCCEEEEEEecccccccchhHHhhhccceeEE
Confidence            35799999999999999999998877664 44567665544332    24678899999999999999999999999999


Q ss_pred             EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125          302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      +|||++|+.+|.+                                                    |+||||++|.||+++
T Consensus        90 ~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~  169 (182)
T d1moza_          90 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG  169 (182)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred             EEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHH
Confidence            9999999999887                                                    799999999999999


Q ss_pred             HHHHHHHHhc
Q psy125          330 FLWLARKLIG  339 (385)
Q Consensus       330 f~~l~~~i~~  339 (385)
                      |+||++.|.+
T Consensus       170 ~~~l~~~i~~  179 (182)
T d1moza_         170 LDWLIDVIKE  179 (182)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998854

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.83  E-value=7e-21  Score=155.55  Aligned_cols=112  Identities=25%  Similarity=0.414  Sum_probs=95.1

Q ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEE
Q psy125          221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCA  300 (385)
Q Consensus       221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~  300 (385)
                      ....+||+++|.+|||||||++++..+.+.. ..+|.+.....    .....+.+.+||+||++.++..+..++++++++
T Consensus         9 ~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~i   83 (173)
T d1e0sa_           9 GNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL   83 (173)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEEEE----EEETTEEEEEEEESCCGGGHHHHGGGTTTCCEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeEEE----eeccceeeEEecCCCcchhhhHHHhhhcccceE
Confidence            3457999999999999999999988776644 34555544433    233567889999999999999999999999999


Q ss_pred             EEEEeCCChhhhhh----------------------------------------------------hheeccccCCCchH
Q psy125          301 IIMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEK  328 (385)
Q Consensus       301 ilv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~  328 (385)
                      |+|||++++.+|.+                                                    |+||||++|+||+|
T Consensus        84 i~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e  163 (173)
T d1e0sa_          84 IFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  163 (173)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHH
Confidence            99999999999887                                                    78999999999999


Q ss_pred             HHHHHHHHH
Q psy125          329 PFLWLARKL  337 (385)
Q Consensus       329 ~f~~l~~~i  337 (385)
                      +|+||.+++
T Consensus       164 ~~~~l~~~~  172 (173)
T d1e0sa_         164 GLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHhc
Confidence            999999875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=7.9e-21  Score=153.36  Aligned_cols=152  Identities=18%  Similarity=0.224  Sum_probs=114.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc--------chhhhhcc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--------LRDGYYIQ   81 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~--------~~~~~~~~   81 (385)
                      +||+++|++|||||||+|+|++.. ...+...++.++..........+..+.++|++|......        ....++..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGRE-AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC-CSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-ceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            799999999999999999977544 344456667776666665666678899999999754332        12345678


Q ss_pred             CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      +|++++++|..+...+.....|...+.....+.|+++|+||+|+......     +......+++++||+++.|+++++.
T Consensus        81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~-----~~~~~~~~~~~iSAk~~~gi~~L~~  155 (161)
T d2gj8a1          81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG-----MSEVNGHALIRLSARTGEGVDVLRN  155 (161)
T ss_dssp             CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----EEEETTEEEEECCTTTCTTHHHHHH
T ss_pred             ccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH-----HHHhCCCcEEEEECCCCCCHHHHHH
Confidence            99999999999887776666665555555568999999999998553321     1223456899999999999999999


Q ss_pred             HHHHHH
Q psy125          162 WLARKL  167 (385)
Q Consensus       162 ~i~~~l  167 (385)
                      +|++.+
T Consensus       156 ~l~~~l  161 (161)
T d2gj8a1         156 HLKQSM  161 (161)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            998763

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.82  E-value=2.1e-20  Score=153.36  Aligned_cols=162  Identities=18%  Similarity=0.094  Sum_probs=108.8

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc-----ccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhh
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-----YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYY   79 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~-----~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~   79 (385)
                      |+++.++|+++|++|||||||+|+|++......     .....|.+...........+..+.++|++|...+.......+
T Consensus         1 ~~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l   80 (179)
T d1wb1a4           1 MDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAA   80 (179)
T ss_dssp             CCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhh
Confidence            788999999999999999999999775321111     111223333333333344567788999999988777777788


Q ss_pred             ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHH----HHHHH----hcCCeEEEEcCC
Q psy125           80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKS----IVFHR----KKNLQYYDISAK  151 (385)
Q Consensus        80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~----~~~~~----~~~~~~~~~Sa~  151 (385)
                      ..+|++++|+|+.+....+... ....+..  .++|+++|+||+|+.........    ..+..    ....+++++||+
T Consensus        81 ~~~d~~ilv~d~~~g~~~~~~~-~~~~~~~--~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~  157 (179)
T d1wb1a4          81 DIIDLALIVVDAKEGPKTQTGE-HMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAK  157 (179)
T ss_dssp             TSCCEEEEEEETTTCSCHHHHH-HHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTT
T ss_pred             hhccccccccccccccchhhhh-hhhhhhh--cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcc
Confidence            8999999999998865433222 2222222  57899999999998765432111    11111    123488999999


Q ss_pred             CCCChHHHHHHHHHHHhc
Q psy125          152 SNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~~  169 (385)
                      +|.|++++++.|...+.+
T Consensus       158 ~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         158 TGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcCCc
Confidence            999999999999888754

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=1.2e-19  Score=149.19  Aligned_cols=159  Identities=14%  Similarity=0.037  Sum_probs=108.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc----cc---chhhhhccCc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF----GG---LRDGYYIQGQ   83 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~----~~---~~~~~~~~~d   83 (385)
                      .|+|+|++|||||||+|+|++... .......+.+..............+.+|||||....    ..   .....+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-ceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            489999999999999999665433 222222222222222334445667889999995421    11   1224467889


Q ss_pred             EEEEEEeCCChh--hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           84 CAIIMFDVTSRI--TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        84 ~illV~d~~~~~--~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      ++++++|+....  .......++..+.....++|+++|+||+|+...+......+.....+.+++.+||++|.|+++++.
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~  161 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKE  161 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHH
Confidence            999999986542  222222333322222346899999999999877666666666777788999999999999999999


Q ss_pred             HHHHHHhcC
Q psy125          162 WLARKLIGD  170 (385)
Q Consensus       162 ~i~~~l~~~  170 (385)
                      .|.+.+...
T Consensus       162 ~i~~~l~~~  170 (180)
T d1udxa2         162 ALHALVRST  170 (180)
T ss_dssp             HHHHHHHTS
T ss_pred             HHHHHHhhc
Confidence            999988654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.82  E-value=2e-19  Score=147.34  Aligned_cols=156  Identities=21%  Similarity=0.323  Sum_probs=113.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+.+||+|+|.+|||||||+++|.++.+.. ..++.+.+....    ....+.+.+||+++..........++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEI----VINNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEE-EECCSCSSCEEE----EETTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceeEEEE----eecceEEEEeccccccccccchhhhhccceeee
Confidence            467999999999999999999988766543 333444332222    224688999999999888888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHH-----HhcCCeEEEEcCCCCCChHHH
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFH-----RKKNLQYYDISAKSNYNFEKP  159 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~gi~~l  159 (385)
                      +|+|.++..++.....+......  ...+.|+++++||+|+.......+.....     .....+++++||++|.|++++
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~  167 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG  167 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHH
Confidence            99999999888765544443332  34688999999999986544333333222     223447999999999999999


Q ss_pred             HHHHHHHH
Q psy125          160 FLWLARKL  167 (385)
Q Consensus       160 ~~~i~~~l  167 (385)
                      +.+|.+.+
T Consensus       168 ~~~L~~~l  175 (177)
T d1zj6a1         168 LEWMMSRL  175 (177)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999875

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=8.4e-21  Score=158.15  Aligned_cols=82  Identities=18%  Similarity=0.161  Sum_probs=69.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      ++||+++|..|||||++++||..+++++.+.+         ...++...+.+.+|||+|+++|..++..|+++++++++|
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~---------~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v   72 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIV---------ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFC   72 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCSEE---------EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCccEE---------EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeE
Confidence            58999999999999999999987777544322         223344567789999999999999999999999999999


Q ss_pred             EeCCChhhhhh
Q psy125          304 FDVTSRITYKN  314 (385)
Q Consensus       304 ~d~~~~~s~~~  314 (385)
                      ||++++.+|..
T Consensus        73 ~d~~~~~~~~~   83 (195)
T d1svsa1          73 VALSDYDLVLA   83 (195)
T ss_dssp             EEGGGGGCBCS
T ss_pred             EeecccchHHH
Confidence            99999998854

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.81  E-value=1.6e-20  Score=151.14  Aligned_cols=108  Identities=26%  Similarity=0.353  Sum_probs=93.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~  304 (385)
                      +||+++|++|||||||++++..+++...+..+...     ....+...+.+.+||++|+..+...+..+++.+++++++|
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFN-----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCC-----EEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeE-----EEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            58999999999999999999988887665554322     1233456778999999999999999999999999999999


Q ss_pred             eCCChhhhhh----------------------------------------------------hheeccccCCCchHHHHH
Q psy125          305 DVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPFLW  332 (385)
Q Consensus       305 d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f~~  332 (385)
                      |++++.+|..                                                    |++|||++|.||+++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            9999999988                                                    789999999999999999


Q ss_pred             HHHHH
Q psy125          333 LARKL  337 (385)
Q Consensus       333 l~~~i  337 (385)
                      |++++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            99875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=1.1e-19  Score=148.16  Aligned_cols=156  Identities=16%  Similarity=0.136  Sum_probs=105.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc---------cchhhhhcc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG---------GLRDGYYIQ   81 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~---------~~~~~~~~~   81 (385)
                      +|+|+|++|||||||+|+|++ .....+....+.|..............+.++|++|.....         ......+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK-KKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCcceecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            689999999999999999665 4444556677778777777777778889999999953211         122344578


Q ss_pred             CcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHHH
Q psy125           82 GQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  161 (385)
Q Consensus        82 ~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (385)
                      +|+++++.+.+....... ..+...+..  .++|+++|+||+|+..+.......++.......++++||++|.|+++++.
T Consensus        81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~--~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~  157 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED-ESLADFLRK--STVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLE  157 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH-HHHHHHHHH--HTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred             CcEEEEeecccccccccc-ccccccccc--ccccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHH
Confidence            999999999877654432 233333433  47899999999999765444434445555666889999999999999999


Q ss_pred             HHHHHHhcC
Q psy125          162 WLARKLIGD  170 (385)
Q Consensus       162 ~i~~~l~~~  170 (385)
                      +|.+.+.++
T Consensus       158 ~i~~~l~e~  166 (171)
T d1mkya1         158 TIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHhCCCC
Confidence            999987554

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.80  E-value=1.2e-18  Score=141.15  Aligned_cols=157  Identities=20%  Similarity=0.333  Sum_probs=118.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||++||++|||||||+|+|+++.+.. ..++.+...    .....+.+.+.++|.++...........+...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV----ETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE----EEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcc-eecccceee----eeeccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            45899999999999999999998877654 334444322    3333456889999999998888888888999999999


Q ss_pred             EEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHH-----HHHhcCCeEEEEcCCCCCChHHHH
Q psy125           88 MFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIV-----FHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        88 V~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      ++|+.+...+.....+......  .....|+++++||.|+.......+...     ++.....+++++||++|.|+++++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            9999988777665554444332  345788999999999976543333222     223344589999999999999999


Q ss_pred             HHHHHHHhc
Q psy125          161 LWLARKLIG  169 (385)
Q Consensus       161 ~~i~~~l~~  169 (385)
                      .+|++.+..
T Consensus       159 ~~l~~~l~~  167 (169)
T d1upta_         159 EWLVETLKS  167 (169)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998754

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.3e-18  Score=140.45  Aligned_cols=150  Identities=18%  Similarity=0.302  Sum_probs=113.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      ||+|+|++|||||||+|+|.++.+ ..+.++.+.+..    ......+.+.+||+++..........++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~-~~~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRL-ATLQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC-CCCCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-CeeeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            899999999999999999887665 345566665443    344456788899999998888888889999999999999


Q ss_pred             CCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHH------------HhcCCeEEEEcCCCCCCh
Q psy125           91 VTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFH------------RKKNLQYYDISAKSNYNF  156 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~gi  156 (385)
                      ..+...+.....+......  ...+.|+++++||.|+.......+..+..            ......++++||++|.|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv  156 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY  156 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSH
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCH
Confidence            9998887766665555444  23578899999999986533222222111            112336899999999999


Q ss_pred             HHHHHHHHH
Q psy125          157 EKPFLWLAR  165 (385)
Q Consensus       157 ~~l~~~i~~  165 (385)
                      ++++++|.+
T Consensus       157 ~e~~~~l~~  165 (166)
T d2qtvb1         157 LEAFQWLSQ  165 (166)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            999999864

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=1.9e-19  Score=150.40  Aligned_cols=83  Identities=20%  Similarity=0.254  Sum_probs=72.4

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      ++||+++|..|||||+++.||..+.|  .+.||+|.+....    ....+.+.+||++|++.++..+..|+++++++++|
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~~----~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~   75 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYPF----DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFL   75 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEEE----ECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEEE----eccceeeeeccccccccccccccccccccceeeEe
Confidence            58999999999999999999988877  3679999776443    34567789999999999999999999999999999


Q ss_pred             EeCCChhhh
Q psy125          304 FDVTSRITY  312 (385)
Q Consensus       304 ~d~~~~~s~  312 (385)
                      ||.++..++
T Consensus        76 ~~~~~~~~~   84 (200)
T d2bcjq2          76 VALSEYDQV   84 (200)
T ss_dssp             EEGGGGGCB
T ss_pred             eeccchhhh
Confidence            999997653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.77  E-value=2.5e-19  Score=144.27  Aligned_cols=149  Identities=19%  Similarity=0.186  Sum_probs=106.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc---------chhhhhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---------LRDGYYI   80 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~---------~~~~~~~   80 (385)
                      +||+|+|.+|||||||+|+|++.. .....+.++.++..........+..+.+|||||......         .....+.
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNED-RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE   79 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHT-BCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-ceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence            699999999999999999976543 344556666666665555555678899999999532111         1122357


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCChHHHH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPF  160 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (385)
                      .+|++++|+|++++...+..     .+.......++++++||.|+.+.....+... ......+++++||+++.|+++++
T Consensus        80 ~ad~ii~v~d~~~~~~~~~~-----~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~-~~~~~~~~~~vSA~~g~gi~~L~  153 (160)
T d1xzpa2          80 KADIVLFVLDASSPLDEEDR-----KILERIKNKRYLVVINKVDVVEKINEEEIKN-KLGTDRHMVKISALKGEGLEKLE  153 (160)
T ss_dssp             HCSEEEEEEETTSCCCHHHH-----HHHHHHTTSSEEEEEEECSSCCCCCHHHHHH-HHTCSTTEEEEEGGGTCCHHHHH
T ss_pred             hCCEEEEEEeCCCCcchhhh-----hhhhhcccccceeeeeeccccchhhhHHHHH-HhCCCCcEEEEECCCCCCHHHHH
Confidence            89999999999987654332     1222235778999999999876544443332 22345689999999999999999


Q ss_pred             HHHHH
Q psy125          161 LWLAR  165 (385)
Q Consensus       161 ~~i~~  165 (385)
                      +.|.+
T Consensus       154 ~~I~k  158 (160)
T d1xzpa2         154 ESIYR  158 (160)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98876

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.77  E-value=4.2e-18  Score=140.19  Aligned_cols=156  Identities=19%  Similarity=0.282  Sum_probs=109.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI   86 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~il   86 (385)
                      .+..||+|||++|||||||+++|.++.+. ...++.+.+......    ....+..||+.+..........+....++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~-~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTSEELTI----AGMTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEEEE----TTEEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc-ceecccccceeEEEe----cccccccccccchhhhhhHHhhhhcccceee
Confidence            56799999999999999999997776554 344555555444332    3467788999999888888888999999999


Q ss_pred             EEEeCCChhhhhcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhhhHHHHHHHHh-----------------cCCeEEE
Q psy125           87 IMFDVTSRITYKNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKVKAKSIVFHRK-----------------KNLQYYD  147 (385)
Q Consensus        87 lV~d~~~~~~~~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~-----------------~~~~~~~  147 (385)
                      +++|+.+...+.....+......  ...+.|+++++||.|+.......+.......                 ....+++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM  165 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEE
Confidence            99999998887665544433332  3468999999999998654333332222211                 1236889


Q ss_pred             EcCCCCCChHHHHHHHHHHH
Q psy125          148 ISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l  167 (385)
                      +||++|.|+++.+++|++.+
T Consensus       166 ~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         166 CSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHTTC
T ss_pred             EeCCCCCCHHHHHHHHHHhh
Confidence            99999999999999998753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=1.5e-18  Score=143.15  Aligned_cols=161  Identities=15%  Similarity=0.143  Sum_probs=100.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEe-CCeeEEEEEEeCCCccccc----cch---hhhhccC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT-NRGAIRFNVWDTAGQEKFG----GLR---DGYYIQG   82 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~-~~~~~~~~i~Dt~g~~~~~----~~~---~~~~~~~   82 (385)
                      .|+|+|++|||||||+|+|.+...  ......+.|........ ......+.+|||||.....    ...   ...+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~--~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKP--KIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECC--EESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCC--ceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            699999999999999999665442  22334444444333222 2334568899999963211    111   1234568


Q ss_pred             cEEEEEEeCCChhhhhcHHHHH--HHHHH----hcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCCCh
Q psy125           83 QCAIIMFDVTSRITYKNVPNWH--RDLVR----VCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNF  156 (385)
Q Consensus        83 d~illV~d~~~~~~~~~~~~~~--~~l~~----~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (385)
                      +.++++++............+.  .....    ...++|+++|+||+|+.......+........+.+++.+||++|.|+
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~g~Gi  160 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGL  160 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTT
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhccCCcEEEEECCCCCCH
Confidence            8888888766544332222111  11111    22367899999999997654332222122233568899999999999


Q ss_pred             HHHHHHHHHHHhcCCCc
Q psy125          157 EKPFLWLARKLIGDPNL  173 (385)
Q Consensus       157 ~~l~~~i~~~l~~~~~~  173 (385)
                      ++++..|.+.+...|..
T Consensus       161 ~~L~~~i~~~L~~~p~~  177 (185)
T d1lnza2         161 RELLFEVANQLENTPEF  177 (185)
T ss_dssp             HHHHHHHHHHHTSCCCC
T ss_pred             HHHHHHHHHhhhhCCCC
Confidence            99999999998766543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=7.6e-19  Score=146.05  Aligned_cols=153  Identities=18%  Similarity=0.153  Sum_probs=109.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+|+|..|||||||+++|..+.+.     +.|+.    ....+...+.+.+||++|++.++..+..++..++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~-----t~~~~----~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGIV----ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSC-----CCSEE----EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC-----CccEE----EEEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            4689999999999999999998775543     33322    23344567889999999999999999999999999999


Q ss_pred             EEeCCChhhhhc-----------HHHHHHHHHH-hcCCCCEEEEEeCCCCcchhh-----------------hHHH----
Q psy125           88 MFDVTSRITYKN-----------VPNWHRDLVR-VCENIPIVLCGNKVDIKDRKV-----------------KAKS----  134 (385)
Q Consensus        88 V~d~~~~~~~~~-----------~~~~~~~l~~-~~~~~~~ilv~nK~Dl~~~~~-----------------~~~~----  134 (385)
                      |+|+++..++..           ...|...+.. .....|+++++||+|+...+.                 ..+.    
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            999998877632           1123332222 245789999999998633211                 0110    


Q ss_pred             -HHHHHh------cCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          135 -IVFHRK------KNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       135 -~~~~~~------~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                       ..+...      ....++++||+++.|++++|..+...+..
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence             111111      12356789999999999999998887643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=4.2e-18  Score=142.08  Aligned_cols=156  Identities=18%  Similarity=0.181  Sum_probs=116.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+++|..|||||||+++|..+.+  .+.||.|.....    .....+.+.+||++|++.++..+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeE
Confidence            468999999999999999999887765  356888876443    34467889999999999999999999999999999


Q ss_pred             EEeCCChhhh-----------hcHHHHHHHHHH-hcCCCCEEEEEeCCCCcchhhh------------------HHHHHH
Q psy125           88 MFDVTSRITY-----------KNVPNWHRDLVR-VCENIPIVLCGNKVDIKDRKVK------------------AKSIVF  137 (385)
Q Consensus        88 V~d~~~~~~~-----------~~~~~~~~~l~~-~~~~~~~ilv~nK~Dl~~~~~~------------------~~~~~~  137 (385)
                      ++|+.+...+           +....|...+.. ...+.|+++++||.|+......                  .....+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            9999886532           234445555443 3468899999999997532210                  011111


Q ss_pred             ----HH------hcCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          138 ----HR------KKNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       138 ----~~------~~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                          ..      .....++++||+++.|++++|..+.+.+.+
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence                11      112346789999999999999999887753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.73  E-value=1.8e-17  Score=136.64  Aligned_cols=158  Identities=18%  Similarity=0.149  Sum_probs=100.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc------------c
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG------------L   74 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~------------~   74 (385)
                      ...+||+++|++|||||||+|+|++.. ...+....+.++..........+..+.++|+||......            .
T Consensus         6 ~~~~kV~iiG~~~~GKSTLin~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~   84 (186)
T d1mkya2           6 TDAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR   84 (186)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTST-TEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHCCC-cceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHH
Confidence            356999999999999999999977643 222334445555554444444556788999999642211            2


Q ss_pred             hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--hHHHHHHHHh-----cCCeEEE
Q psy125           75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--KAKSIVFHRK-----KNLQYYD  147 (385)
Q Consensus        75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--~~~~~~~~~~-----~~~~~~~  147 (385)
                      ....+..+|++++|+|+......+. ..+...+..  .+.|+++|+||+|+.....  ..+..+....     ...++++
T Consensus        85 ~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~--~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  161 (186)
T d1mkya2          85 VVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIF  161 (186)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH--cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEE
Confidence            2334578999999999986544322 223333332  5789999999999754332  1222222222     2347999


Q ss_pred             EcCCCCCChHHHHHHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                      +||++|.|+++++..|.+++.
T Consensus       162 vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         162 TSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999987653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.73  E-value=2.4e-17  Score=135.55  Aligned_cols=150  Identities=16%  Similarity=0.137  Sum_probs=97.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc---------------ch
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG---------------LR   75 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~---------------~~   75 (385)
                      .|+|+|++|||||||+|+|++...  ...+.+|+|+....+...    .+.++||||......               ..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~--~~~~~~g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKV--RRGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCC--SSSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCEeecccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999876543  356777888776554433    256899999521111               11


Q ss_pred             hhhhccCcEEEEEEeCCChhhh---------hcHHH-HHHHHHHhcCCCCEEEEEeCCCCcchhh-hHHHHHHHHhc---
Q psy125           76 DGYYIQGQCAIIMFDVTSRITY---------KNVPN-WHRDLVRVCENIPIVLCGNKVDIKDRKV-KAKSIVFHRKK---  141 (385)
Q Consensus        76 ~~~~~~~d~illV~d~~~~~~~---------~~~~~-~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~~~~~~~~~~~---  141 (385)
                      ...+..+|++++|+|.......         ..... ....+..  .++|+++|+||+|+..... ...........   
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~  153 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS  153 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHHHHHHHHHHHhccccc
Confidence            2334678999999998754221         11111 2222222  5789999999999754322 11111111111   


Q ss_pred             --CCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          142 --NLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       142 --~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                        ...++++||+++.|+++++..|.+.+.
T Consensus       154 ~~~~~~~~vSA~~g~gi~~L~~~i~~~l~  182 (184)
T d2cxxa1         154 EIDKVFIPISAKFGDNIERLKNRIFEVIR  182 (184)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence              124789999999999999999988774

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=5.3e-18  Score=136.70  Aligned_cols=105  Identities=19%  Similarity=0.347  Sum_probs=91.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEEEe
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD  305 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d  305 (385)
                      ||+++|++|||||||++++..+.+. .+.++.+.+....    ........+||+.|...+......+++.+++++++||
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSEEL----AIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEEEE----CCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEEEe----ccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            8999999999999999999887764 5677776555433    3334557899999999999999999999999999999


Q ss_pred             CCChhhhhh-----------------------------------------------------------hheeccccCCCc
Q psy125          306 VTSRITYKN-----------------------------------------------------------YYDISAKSNYNF  326 (385)
Q Consensus       306 ~~~~~s~~~-----------------------------------------------------------~~e~Sak~~~~v  326 (385)
                      .+++.++..                                                           |++|||++|+||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv  156 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY  156 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSH
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCH
Confidence            999999877                                                           799999999999


Q ss_pred             hHHHHHHHH
Q psy125          327 EKPFLWLAR  335 (385)
Q Consensus       327 ~~~f~~l~~  335 (385)
                      +|+|+||++
T Consensus       157 ~e~~~~l~~  165 (166)
T d2qtvb1         157 LEAFQWLSQ  165 (166)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            999999975

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.71  E-value=1.1e-17  Score=142.19  Aligned_cols=159  Identities=19%  Similarity=0.174  Sum_probs=101.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccccceeeeEE------------EEEEeCCeeEEEEEEeCCCccc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHP------------LVFHTNRGAIRFNVWDTAGQEK   70 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~----~~~~~g~t~~~------------~~~~~~~~~~~~~i~Dt~g~~~   70 (385)
                      ++.+.|+|+|++++|||||+|+|++......    .....+.....            .......+...+.++||||+..
T Consensus         3 ~r~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (227)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceec
Confidence            3445699999999999999999876421110    00000100000            0011234566789999999998


Q ss_pred             cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh-------------------
Q psy125           71 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-------------------  131 (385)
Q Consensus        71 ~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~-------------------  131 (385)
                      +.......+..+|++|+|+|+.+....+.. ..+..+..  .++|+++++||+|+......                   
T Consensus        83 f~~~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~--~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~  159 (227)
T d1g7sa4          83 FTTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQ  159 (227)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHH
T ss_pred             ccccchhcccccceEEEEEecccCcccchh-HHHHHhhc--CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHH
Confidence            888777788999999999999875443322 22222322  58899999999998542210                   


Q ss_pred             ---HHH----HHHHHh--------------cCCeEEEEcCCCCCChHHHHHHHHHHHh
Q psy125          132 ---AKS----IVFHRK--------------KNLQYYDISAKSNYNFEKPFLWLARKLI  168 (385)
Q Consensus       132 ---~~~----~~~~~~--------------~~~~~~~~Sa~~~~gi~~l~~~i~~~l~  168 (385)
                         ...    ..+...              ...+++++||.+|.|+++++..|.....
T Consensus       160 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         160 KLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence               000    011111              1136889999999999999988877653

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.71  E-value=8.8e-17  Score=133.47  Aligned_cols=154  Identities=11%  Similarity=0.059  Sum_probs=92.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc-------------c
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG-------------L   74 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~-------------~   74 (385)
                      .-.+|+|+|++|||||||+|+|++...........+.|...........   +.+.|+++......             .
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDE---LHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTT---EEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccccc---ceEEEEEeeccccccccccchhhhHHhh
Confidence            3359999999999999999998876655566666666666555544432   33456655321111             1


Q ss_pred             hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHH-H---H-HhcCCeEEEEc
Q psy125           75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIV-F---H-RKKNLQYYDIS  149 (385)
Q Consensus        75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~-~---~-~~~~~~~~~~S  149 (385)
                      ....+..++++++|+|++.+...+. ..++..+..  .++|+++|+||+|+.......+... +   . .....+++.+|
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~--~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPSNDD-VQMYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred             hhccccchhhhhhhhhccccccccc-ccccccccc--ccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEe
Confidence            1223356789999999976533221 233333433  5789999999999865443222221 1   1 12445889999


Q ss_pred             CCCCCChHHHHHHHHHHH
Q psy125          150 AKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l  167 (385)
                      |+++.|+++++.+|.+.+
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.71  E-value=5.8e-17  Score=131.08  Aligned_cols=113  Identities=24%  Similarity=0.442  Sum_probs=95.6

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII  302 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il  302 (385)
                      ..+||+++|.+|||||||++++..++|... .++.+.....    .....+.+.+||++|...+......++..++++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVET----VTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEEEE----EEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceeeee----eccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            358999999999999999999998888653 3555433322    22345678999999999999999999999999999


Q ss_pred             EEeCCChhhhhh----------------------------------------------------hheeccccCCCchHHH
Q psy125          303 MFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       303 v~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      ++|+++..++..                                                    |++|||++|.||+++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            999999888877                                                    8999999999999999


Q ss_pred             HHHHHHHhcC
Q psy125          331 LWLARKLIGD  340 (385)
Q Consensus       331 ~~l~~~i~~~  340 (385)
                      ++|++.+.++
T Consensus       159 ~~l~~~l~~k  168 (169)
T d1upta_         159 EWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999988654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=9e-18  Score=140.11  Aligned_cols=83  Identities=18%  Similarity=0.184  Sum_probs=65.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|.+|||||||+++|   .|...+.||+|.....    ++.....+.+||++|++.++..+..+++++++++++
T Consensus         2 ~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG~~~~~----~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~   74 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFL   74 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSSEEEEE----EEETTEEEEEEEECC-------CTTSCTTCCEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHH---hcCCCCCCeeeeEEEE----EeeeeeeeeeecccceeeecccccccccccceeEEE
Confidence            489999999999999999998   4778889999965443    233567789999999999999999999999999999


Q ss_pred             EeCCChhhhh
Q psy125          304 FDVTSRITYK  313 (385)
Q Consensus       304 ~d~~~~~s~~  313 (385)
                      ||.++..+|.
T Consensus        75 ~~~~~~~~~~   84 (200)
T d1zcba2          75 VSSSEFDQVL   84 (200)
T ss_dssp             EETTCTTCEE
T ss_pred             EEcCCcceee
Confidence            9999987764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=4.3e-17  Score=135.91  Aligned_cols=155  Identities=20%  Similarity=0.202  Sum_probs=105.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+++|.+|||||||++++   .+...+.||.|+....    .+.+.+.+.+||++|++.++..+..++++++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG~~~~~----~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSSEEEEE----EEETTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHH---hcCCCCCCeeeeEEEE----EeeeeeeeeeecccceeeecccccccccccceeEE
Confidence            3589999999999999999997   3556677888865443    34467899999999999999999999999999999


Q ss_pred             EEeCCChhhh----------hcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchhh------------------hHHH---
Q psy125           88 MFDVTSRITY----------KNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRKV------------------KAKS---  134 (385)
Q Consensus        88 V~d~~~~~~~----------~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~~------------------~~~~---  134 (385)
                      +++.++...+          .....++..+..  ...+.|+++++||+|+..+..                  ....   
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            9999986543          122223333332  246889999999999754321                  0111   


Q ss_pred             -HHHHHh-------cCCeEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125          135 -IVFHRK-------KNLQYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus       135 -~~~~~~-------~~~~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                       .+....       ....++.+||+++.+++++|..+...+.+
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence             111111       12345679999999999999988776643

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.70  E-value=3.1e-17  Score=134.00  Aligned_cols=111  Identities=25%  Similarity=0.420  Sum_probs=89.9

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      .+.+||+++|.+|||||||++++..+++... .++.+.......  .  ..+.+.+||++|.+.....+..++..+++++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~~-~~~~~~~~~~~~--~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i   87 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIV--I--NNTRFLMWDIGGQESLRSSWNTYYTNTEFVI   87 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCEEE-ECCSCSSCEEEE--E--TTEEEEEEECCC----CGGGHHHHTTCCEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccceeEEEEe--e--cceEEEEeccccccccccchhhhhccceeee
Confidence            3569999999999999999999988777543 344443333322  2  3467899999999999999999999999999


Q ss_pred             EEEeCCChhhhhh----------------------------------------------------hheeccccCCCchHH
Q psy125          302 IMFDVTSRITYKN----------------------------------------------------YYDISAKSNYNFEKP  329 (385)
Q Consensus       302 lv~d~~~~~s~~~----------------------------------------------------~~e~Sak~~~~v~~~  329 (385)
                      +|+|.++..+|..                                                    |++|||++|.||+|+
T Consensus        88 ~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~  167 (177)
T d1zj6a1          88 VVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQG  167 (177)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHH
T ss_pred             eecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHH
Confidence            9999999999977                                                    899999999999999


Q ss_pred             HHHHHHHH
Q psy125          330 FLWLARKL  337 (385)
Q Consensus       330 f~~l~~~i  337 (385)
                      |++|++++
T Consensus       168 ~~~L~~~l  175 (177)
T d1zj6a1         168 LEWMMSRL  175 (177)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99999986

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.68  E-value=3.7e-17  Score=134.42  Aligned_cols=111  Identities=18%  Similarity=0.275  Sum_probs=86.5

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEE
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAI  301 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i  301 (385)
                      ....||+++|.+|||||||++++..+.+... .++.+.+....  ..+  ...+..||+.++..+...+..+++.+++++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~-~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEEL--TIA--GMTFTTFDLGGHIQARRVWKNYLPAINGIV   85 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEE--EET--TEEEEEEEECC----CCGGGGGGGGCSEEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcce-ecccccceeEE--Eec--ccccccccccchhhhhhHHhhhhcccceee
Confidence            4568999999999999999999887776543 45555554433  333  345789999999999999999999999999


Q ss_pred             EEEeCCChhhhhh----------------------------------------------------------------hhe
Q psy125          302 IMFDVTSRITYKN----------------------------------------------------------------YYD  317 (385)
Q Consensus       302 lv~d~~~~~s~~~----------------------------------------------------------------~~e  317 (385)
                      +++|++++..+.+                                                                |++
T Consensus        86 ~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (186)
T d1f6ba_          86 FLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFM  165 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEE
T ss_pred             eeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEE
Confidence            9999999999887                                                                679


Q ss_pred             eccccCCCchHHHHHHHHHH
Q psy125          318 ISAKSNYNFEKPFLWLARKL  337 (385)
Q Consensus       318 ~Sak~~~~v~~~f~~l~~~i  337 (385)
                      |||++|+||+|+|+||+++|
T Consensus       166 ~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         166 CSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CBTTTTBSHHHHHHHHHTTC
T ss_pred             EeCCCCCCHHHHHHHHHHhh
Confidence            99999999999999999875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2.8e-16  Score=131.70  Aligned_cols=115  Identities=19%  Similarity=0.283  Sum_probs=84.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc-cchhhhhccCcEEEEEE
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-GLRDGYYIQGQCAIIMF   89 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~-~~~~~~~~~~d~illV~   89 (385)
                      .|+|+|++|||||||+|+|+++.+... .++.+.++...... ....+.+.+||++|++.++ ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            689999999999999999888776554 46666665544332 4557889999999998764 35577789999999999


Q ss_pred             eCCChhhh-hcHHHHHHHHHH----hcCCCCEEEEEeCCCCcc
Q psy125           90 DVTSRITY-KNVPNWHRDLVR----VCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        90 d~~~~~~~-~~~~~~~~~l~~----~~~~~~~ilv~nK~Dl~~  127 (385)
                      |+++...+ .....++..+..    .....|+++++||+|+..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            99987653 333333333321    224678999999999865

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=5e-16  Score=135.36  Aligned_cols=160  Identities=14%  Similarity=0.160  Sum_probs=110.7

Q ss_pred             hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEEcCCCCC
Q psy125           75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNY  154 (385)
Q Consensus        75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  154 (385)
                      ....+..+|++|+|+|+.++.+..+  ..+..+.   .++|.++|+||+|+.+......+.+.+...+..++.+|+.++.
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~---~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~   83 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL---KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQ   83 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC---SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH---cCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCC
Confidence            4556889999999999999987765  2333332   5889999999999998877777777777778889999999999


Q ss_pred             ChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCC
Q psy125          155 NFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGG  234 (385)
Q Consensus       155 gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~  234 (385)
                      +..+....+...+..                             .+....            ........++++++|.||
T Consensus        84 ~~~~~~~~~~~~l~~-----------------------------~~~~~~------------~~~~~~~~~~v~vvG~PN  122 (273)
T d1puja_          84 GLNQIVPASKEILQE-----------------------------KFDRMR------------AKGVKPRAIRALIIGIPN  122 (273)
T ss_dssp             TGGGHHHHHHHHHHH-----------------------------HHHHHH------------HTTCCCCCEEEEEEESTT
T ss_pred             Cccccchhhhhhhhh-----------------------------hhhhhh------------hccCCCCceEEEEEecCc
Confidence            988777666554421                             111111            112233568999999999


Q ss_pred             CCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCcc
Q psy125          235 TGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE  284 (385)
Q Consensus       235 vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~  284 (385)
                      |||||++|++.+ .-...+.+.+|+|+..+.+..+..   +.++||||.-
T Consensus       123 vGKSsliN~L~~-~~~~~~~~~pG~Tr~~~~i~~~~~---~~l~DTPGi~  168 (273)
T d1puja_         123 VGKSTLINRLAK-KNIAKTGDRPGITTSQQWVKVGKE---LELLDTPGIL  168 (273)
T ss_dssp             SSHHHHHHHHHT-SCCC------------CCEEETTT---EEEEECCCCC
T ss_pred             cchhhhhhhhhc-cceEEECCcccccccceEEECCCC---eEEecCCCcc
Confidence            999999999764 445678899999998887776543   7899999974

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.66  E-value=1.8e-16  Score=131.45  Aligned_cols=160  Identities=16%  Similarity=0.095  Sum_probs=103.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCC-CcccccceeeeEEEE------E-----------------EeCCeeEEEEE
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLV------F-----------------HTNRGAIRFNV   62 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~-~~~~~~~g~t~~~~~------~-----------------~~~~~~~~~~i   62 (385)
                      .+.++|+++|+.++|||||+|+|++.... .......|.|.....      .                 ........+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            35689999999999999999998753211 111111222211100      0                 11123466899


Q ss_pred             EeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH----HHHHHH
Q psy125           63 WDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----KSIVFH  138 (385)
Q Consensus        63 ~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~----~~~~~~  138 (385)
                      +||||+..+.......+..+|++++|+|+.+....+...+.+..+. .....+++++.||+|+.+.....    ...++.
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~-~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~  161 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ-IIGQKNIIIAQNKIELVDKEKALENYRQIKEFI  161 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH-HHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHH-HhcCccceeeeecccchhhHHHHHHHHHHHHHh
Confidence            9999999887777777789999999999987643322222222222 22345688899999987654322    222233


Q ss_pred             Hhc---CCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125          139 RKK---NLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       139 ~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                      ...   ..+++++||++|.|+++++..|...+
T Consensus       162 ~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         162 EGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             TTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            222   24789999999999999999887754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.66  E-value=1.3e-16  Score=131.41  Aligned_cols=157  Identities=13%  Similarity=0.004  Sum_probs=110.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcC------CC--------CCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTG------EF--------EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG   73 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~------~~--------~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~   73 (385)
                      |.++|+++|+.++|||||+++|+..      ..        ........|.|.+.......+....++++||||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            5689999999999999999998641      00        111234567788877777788888999999999998877


Q ss_pred             chhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-----hHHHHHHHHhcC-----C
Q psy125           74 LRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-----KAKSIVFHRKKN-----L  143 (385)
Q Consensus        74 ~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~-----~  143 (385)
                      .....+..+|++|+|+|+.+....+..  .+..+.......++++++||+|+.....     ..+...+....+     .
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT~--~~~~~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~  159 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEET  159 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhHH--HHHHHHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccC
Confidence            777778999999999999986544332  2222222334568999999999864322     122333333222     4


Q ss_pred             eEEEEcCCCC----------CChHHHHHHHHHH
Q psy125          144 QYYDISAKSN----------YNFEKPFLWLARK  166 (385)
Q Consensus       144 ~~~~~Sa~~~----------~gi~~l~~~i~~~  166 (385)
                      +++++|+++|          .++.++++.|...
T Consensus       160 pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         160 PIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             CEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             EEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            6899999877          4677777766554

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.65  E-value=1.8e-15  Score=126.28  Aligned_cols=162  Identities=18%  Similarity=0.127  Sum_probs=102.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc-------cccccee-eeEEEEE---------------------EeCC
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-------YVATLGV-EVHPLVF---------------------HTNR   55 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~-------~~~~~g~-t~~~~~~---------------------~~~~   55 (385)
                      ...|.++|+++|+.++|||||+++|++......       .....|. ++.....                     ....
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK   83 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeecccc
Confidence            456789999999999999999999875221100       0000110 0000000                     0011


Q ss_pred             eeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHH--
Q psy125           56 GAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK--  133 (385)
Q Consensus        56 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~--  133 (385)
                      ....+.++||||+..|.......+..+|++|+|+|+.+....... .....+.....-.|+++++||+|+........  
T Consensus        84 ~~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t-~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          84 FLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGIIGVKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHH-HHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHH
T ss_pred             ceEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhH-HHHHHHHHHcCCceeeeccccCCCccchHHHHHH
Confidence            235789999999998877777777899999999999875311111 11222222334458899999999976443221  


Q ss_pred             --HHHHHHhc---CCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125          134 --SIVFHRKK---NLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       134 --~~~~~~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                        ...+....   ..+++++||++|.|+++++..|...+
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence              22222211   34789999999999999999988775

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.61  E-value=2.6e-16  Score=128.61  Aligned_cols=118  Identities=16%  Similarity=0.034  Sum_probs=87.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc--------ccc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG--------YYI  295 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--------~~~  295 (385)
                      ...|+++|.+|||||||++++++... .......+++..............+.+|||||+.........        +++
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKV-APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCc-eeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence            45799999999999999999886543 233344445544333333334557899999998665444432        467


Q ss_pred             cCcEEEEEEeCCChhhhhh--------------------------------------------hheeccccCCCchHHHH
Q psy125          296 QGQCAIIMFDVTSRITYKN--------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       296 ~~~~~ilv~d~~~~~s~~~--------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      +||++|+|+|++++.+..+                                            ++++||++|.||+++|+
T Consensus        84 ~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~  163 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKA  163 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHH
T ss_pred             cccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCHHHHHHHHHhhcccCceEEEecCCCCCHHHHHH
Confidence            8999999999998765544                                            78899999999999999


Q ss_pred             HHHHHHhcCCC
Q psy125          332 WLARKLIGDPN  342 (385)
Q Consensus       332 ~l~~~i~~~~~  342 (385)
                      +|++.+.+.+.
T Consensus       164 ~i~~~lpe~p~  174 (178)
T d1wf3a1         164 DLLALMPEGPF  174 (178)
T ss_dssp             HHHTTCCBCCC
T ss_pred             HHHHhCCCCCC
Confidence            99987765443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.61  E-value=2.1e-15  Score=127.30  Aligned_cols=114  Identities=21%  Similarity=0.267  Sum_probs=86.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAII   87 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~ill   87 (385)
                      +.+||+|+|..|||||||++++..+.    ..||.|+.....    +.+.+.+.+||++|+..++..+..++.+++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~~~----~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFETKF----QVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEEEE----EETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEEEE----EECcEEEEEEecCccceeccchhhhcccccceEE
Confidence            46899999999999999999986643    347778654332    3357899999999999999999999999999999


Q ss_pred             EEeCCChhhh----------hcHHHHHHHHHH--hcCCCCEEEEEeCCCCcchh
Q psy125           88 MFDVTSRITY----------KNVPNWHRDLVR--VCENIPIVLCGNKVDIKDRK  129 (385)
Q Consensus        88 V~d~~~~~~~----------~~~~~~~~~l~~--~~~~~~~ilv~nK~Dl~~~~  129 (385)
                      |+|+++...+          .+...++..+..  ...+.|++|++||+|+...+
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k  130 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEK  130 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHH
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhh
Confidence            9999875432          111122222222  34679999999999986544

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=5.1e-16  Score=124.59  Aligned_cols=112  Identities=18%  Similarity=0.159  Sum_probs=85.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccc--------cccccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR--------DGYYIQ  296 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~--------~~~~~~  296 (385)
                      +||+++|.+|||||||+++++.... ......+|++..............+.+|||+|........        ..++++
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc-eEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            7999999999999999999885543 2233344444444433333345568899999976543322        235789


Q ss_pred             CcEEEEEEeCCChhhhhh----------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          297 GQCAIIMFDVTSRITYKN----------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       297 ~~~~ilv~d~~~~~s~~~----------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      ++++++++|.+++.+++.                                        +++|||++|.||++++++|+++
T Consensus        81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1          81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHHHHhCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            999999999999887765                                        8999999999999999999986


Q ss_pred             H
Q psy125          337 L  337 (385)
Q Consensus       337 i  337 (385)
                      +
T Consensus       161 l  161 (161)
T d2gj8a1         161 M  161 (161)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=2.4e-15  Score=124.66  Aligned_cols=147  Identities=17%  Similarity=0.152  Sum_probs=100.5

Q ss_pred             hhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHH--hcCCeEEEEcCCCC
Q psy125           77 GYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHR--KKNLQYYDISAKSN  153 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~  153 (385)
                      ..+.+.|.+++|+.+..|. +...+++++.....  .+++.++|+||+|+.+......+..+..  ..+++++.+|++++
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~--~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~   83 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTG   83 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--cCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccc
Confidence            3567899999999998764 34445555544433  6899999999999977554443333333  34578999999999


Q ss_pred             CChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCC
Q psy125          154 YNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDG  233 (385)
Q Consensus       154 ~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~  233 (385)
                      .|++++...+.    +                                                       -..+++|.+
T Consensus        84 ~g~~~L~~~l~----~-------------------------------------------------------kt~~~~G~S  104 (225)
T d1u0la2          84 MGIEELKEYLK----G-------------------------------------------------------KISTMAGLS  104 (225)
T ss_dssp             TTHHHHHHHHS----S-------------------------------------------------------SEEEEECST
T ss_pred             hhHhhHHHHhc----C-------------------------------------------------------CeEEEECCC
Confidence            99987665431    1                                                       247899999


Q ss_pred             CCCHHHHHHHHhcCc------cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125          234 GTGKTTFVKRHLTGE------FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG  287 (385)
Q Consensus       234 ~vgks~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  287 (385)
                      |||||||+|.++.+.      .........+||.....+.+.+++   .|+||||...+.
T Consensus       105 GVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~~  161 (225)
T d1u0la2         105 GVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANLE  161 (225)
T ss_dssp             TSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTCC
T ss_pred             CCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCcccccc
Confidence            999999999977432      233334455577777788886555   699999987765

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.59  E-value=9.3e-17  Score=128.87  Aligned_cols=111  Identities=21%  Similarity=0.238  Sum_probs=81.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc--c----cc---cccc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG--L----RD---GYYI  295 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--~----~~---~~~~  295 (385)
                      +||+++|.+|||||||++++++.. .......++++...........+..+.+|||||......  .    ..   ..+.
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNED-RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE   79 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHT-BCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-ceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence            589999999999999999977543 333444445554444333443456788999999532111  1    11   1357


Q ss_pred             cCcEEEEEEeCCChhhhhh---------------------------------------hheeccccCCCchHHHHHHHHH
Q psy125          296 QGQCAIIMFDVTSRITYKN---------------------------------------YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       296 ~~~~~ilv~d~~~~~s~~~---------------------------------------~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      .+|++++|+|++++.+.+.                                       ++++||++|.||+++|++|.++
T Consensus        80 ~ad~ii~v~d~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2          80 KADIVLFVLDASSPLDEEDRKILERIKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             HCSEEEEEEETTSCCCHHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             hCCEEEEEEeCCCCcchhhhhhhhhcccccceeeeeeccccchhhhHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence            8999999999999888766                                       8999999999999999999875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=6.8e-15  Score=120.04  Aligned_cols=157  Identities=18%  Similarity=0.115  Sum_probs=96.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcccc---------ccchhhhhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKF---------GGLRDGYYI   80 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~---------~~~~~~~~~   80 (385)
                      -.|+|+|.+|||||||+|+|++... .......+.++.........+...+..+|+++....         .........
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKI-SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG   84 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSE-EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCc-eeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchh
Confidence            4689999999999999999776543 222333333333333333334455667888875321         112222334


Q ss_pred             cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh-h-HHHHHHHHh-cCCeEEEEcCCCCCChH
Q psy125           81 QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV-K-AKSIVFHRK-KNLQYYDISAKSNYNFE  157 (385)
Q Consensus        81 ~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~-~-~~~~~~~~~-~~~~~~~~Sa~~~~gi~  157 (385)
                      .+++++++.|..+....  ...+...+.  ....|.++++||.|...... . .....+... ...+++++||+++.|++
T Consensus        85 ~~~~~l~~~d~~~~~~~--~~~~~~~l~--~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~  160 (179)
T d1egaa1          85 DVELVIFVVEGTRWTPD--DEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD  160 (179)
T ss_dssp             CEEEEEEEEETTCCCHH--HHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred             hcceeEEEEecCccchh--HHHHHHHhh--hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHH
Confidence            56777788887654322  122333333  25678899999998765433 1 222223332 33589999999999999


Q ss_pred             HHHHHHHHHHhcCC
Q psy125          158 KPFLWLARKLIGDP  171 (385)
Q Consensus       158 ~l~~~i~~~l~~~~  171 (385)
                      +++..|+..+.+.|
T Consensus       161 ~L~~~i~~~lpe~~  174 (179)
T d1egaa1         161 TIAAIVRKHLPEAT  174 (179)
T ss_dssp             HHHHHHHTTCCBCC
T ss_pred             HHHHHHHHhCCCCC
Confidence            99999988875553

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.57  E-value=8.1e-15  Score=121.66  Aligned_cols=117  Identities=17%  Similarity=0.135  Sum_probs=87.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcC--C------CCC-------cccccceeeeEEEEEEeCCeeEEEEEEeCCCccccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTG--E------FEK-------KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG   72 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~--~------~~~-------~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~   72 (385)
                      |.++|+++|+.++|||||+++|+..  .      ...       ......|+|.+.......+.+..++++||||+.++.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            5689999999999999999998631  0      000       001123778887888888888999999999999988


Q ss_pred             cchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCC-EEEEEeCCCCcc
Q psy125           73 GLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP-IVLCGNKVDIKD  127 (385)
Q Consensus        73 ~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~-~ilv~nK~Dl~~  127 (385)
                      ......+..+|++|+|+|+.+....+....|... . . .++| +++++||+|+.+
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~-~-~-~gi~~iiv~iNK~D~~~  134 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTREHILLA-R-Q-VGVPYIVVFMNKVDMVD  134 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHH-H-H-TTCCCEEEEEECGGGCC
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHH-H-H-cCCCeEEEEEEecccCC
Confidence            8888888999999999999887665543333222 2 1 3555 778899999865

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=4e-14  Score=116.07  Aligned_cols=161  Identities=12%  Similarity=0.040  Sum_probs=81.3

Q ss_pred             CCCCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc-------hh
Q psy125            4 EMDMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL-------RD   76 (385)
Q Consensus         4 ~~~~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~-------~~   76 (385)
                      .+....++|+|+|.+|||||||+|+|++...........+.+..........+...+...+.++.......       ..
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhh
Confidence            34556799999999999999999997665544333333332222222322233232222222222111110       11


Q ss_pred             hhh---ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHH----HHHHHHhc--CCeEEE
Q psy125           77 GYY---IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAK----SIVFHRKK--NLQYYD  147 (385)
Q Consensus        77 ~~~---~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~----~~~~~~~~--~~~~~~  147 (385)
                      ...   ...+.++.+.+......... ..+...+..  ...++++++||+|+........    ..+.....  ..+++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  167 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET  167 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred             hhhhhhhheeEEEEeecccccchhHH-HHHHHHhhh--ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEE
Confidence            111   22333444455544322221 223333322  4778999999999876433222    22222222  347899


Q ss_pred             EcCCCCCChHHHHHHHHHHH
Q psy125          148 ISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l  167 (385)
                      +||++|.|+++++..|...+
T Consensus       168 vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         168 FSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999987654

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.54  E-value=9.1e-14  Score=116.42  Aligned_cols=150  Identities=19%  Similarity=0.192  Sum_probs=97.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------------------------cccccceeeeEEEEEEeC
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHLT--GEFEK-----------------------------KYVATLGVEVHPLVFHTN   54 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll~--~~~~~-----------------------------~~~~~~g~t~~~~~~~~~   54 (385)
                      ....+||+++|+.++|||||+++|+.  +....                             ......|.+.........
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            34568999999999999999999863  11100                             001122333333344444


Q ss_pred             CeeEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh----
Q psy125           55 RGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV----  130 (385)
Q Consensus        55 ~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~----  130 (385)
                      .....+.++|+||+..+.......+..+|++++|+|+.+....+...  ...+.....-..++++.||.|+.+...    
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e--~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~  163 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASLLGIKHIVVAINKMDLNGFDERVFE  163 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHHTTCCEEEEEEECTTTTTSCHHHHH
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHH--HHHHHHHcCCCEEEEEEEccccccccceehh
Confidence            55678999999999998887888889999999999998765444322  222333323345788999999865221    


Q ss_pred             --hHHHHHHHHhcCC-----eEEEEcCCCCCChH
Q psy125          131 --KAKSIVFHRKKNL-----QYYDISAKSNYNFE  157 (385)
Q Consensus       131 --~~~~~~~~~~~~~-----~~~~~Sa~~~~gi~  157 (385)
                        ..++..+....+.     +++++||.+|.|+.
T Consensus       164 ~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         164 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             hhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence              2223334433332     67899999999874

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=1.2e-14  Score=121.54  Aligned_cols=114  Identities=17%  Similarity=0.170  Sum_probs=81.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhh----hccCcE
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGY----YIQGQC   84 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~----~~~~d~   84 (385)
                      .++|+|+|++|||||||+|+|+++.+.+      ++|+.......+.++..+.+||+||+.........+    ...++.
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~~~~~------~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~   76 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTDSVRP------TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKG   76 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSSCCC------BCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC------eEEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccc
Confidence            4699999999999999999988866432      344444556667777888999999998765544433    345678


Q ss_pred             EEEEEeCCC-hhhhhcHHHHHHHHH----H-hcCCCCEEEEEeCCCCcch
Q psy125           85 AIIMFDVTS-RITYKNVPNWHRDLV----R-VCENIPIVLCGNKVDIKDR  128 (385)
Q Consensus        85 illV~d~~~-~~~~~~~~~~~~~l~----~-~~~~~~~ilv~nK~Dl~~~  128 (385)
                      +++++|+.+ ..++.....|+..+.    . ...+.|+++++||+|+...
T Consensus        77 ~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          77 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            888888664 445555555543332    2 2357899999999998653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.51  E-value=1.3e-14  Score=122.33  Aligned_cols=81  Identities=22%  Similarity=0.292  Sum_probs=67.9

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccccCcEEEEE
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIM  303 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv  303 (385)
                      .+||+++|..|||||+++.++..++    +.||+|.....  +.+  +.+.+.+||++|++.++..|..|+++++++++|
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~~--~~~--~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v   77 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFETK--FQV--DKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFV   77 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEEE--EEE--TTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEE
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEEE--EEE--CcEEEEEEecCccceeccchhhhcccccceEEE
Confidence            4899999999999999999987554    45788855433  333  457789999999999999999999999999999


Q ss_pred             EeCCChhhh
Q psy125          304 FDVTSRITY  312 (385)
Q Consensus       304 ~d~~~~~s~  312 (385)
                      ||+++...+
T Consensus        78 ~d~s~~~~~   86 (221)
T d1azta2          78 VASSSYNMV   86 (221)
T ss_dssp             EETTGGGCB
T ss_pred             EEccccccc
Confidence            999976543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.46  E-value=8.7e-15  Score=121.59  Aligned_cols=146  Identities=16%  Similarity=0.172  Sum_probs=94.6

Q ss_pred             hhhccCcEEEEEEeCCChh-hhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh----HHHHHHHHhcCCeEEEEcCC
Q psy125           77 GYYIQGQCAIIMFDVTSRI-TYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKNLQYYDISAK  151 (385)
Q Consensus        77 ~~~~~~d~illV~d~~~~~-~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~~~~~~Sa~  151 (385)
                      ..+.+.|.+++|+++.++. +...+++++....  ..+++.++|+||+||......    ..+.+.+...+++++.+|++
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~--~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE--ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH--TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHHHHHHHH--HcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecC
Confidence            3457899999999998764 4444555554433  368899999999999764332    22344566678999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEEC
Q psy125          152 SNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVG  231 (385)
Q Consensus       152 ~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G  231 (385)
                      ++.|++++...+.                                                           .-..+++|
T Consensus        84 ~~~gl~~L~~~l~-----------------------------------------------------------~~~~vl~G  104 (231)
T d1t9ha2          84 DQDSLADIIPHFQ-----------------------------------------------------------DKTTVFAG  104 (231)
T ss_dssp             HHTTCTTTGGGGT-----------------------------------------------------------TSEEEEEE
T ss_pred             ChhHHHHHHHhhc-----------------------------------------------------------cceEEEEC
Confidence            8888764332210                                                           12468999


Q ss_pred             CCCCCHHHHHHHHhcCc------cccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125          232 DGGTGKTTFVKRHLTGE------FEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG  287 (385)
Q Consensus       232 ~~~vgks~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  287 (385)
                      .+|||||||+|.++.+.      .........+||.....+..+++    .|+||||...+.
T Consensus       105 ~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~gg----~iiDTPG~r~~~  162 (231)
T d1t9ha2         105 QSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGG----LVADTPGFSSLE  162 (231)
T ss_dssp             SHHHHHHHHHHHHCC-------------------CCCCCEEEETTE----EEESSCSCSSCC
T ss_pred             CCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCCC----EEEECCcccccc
Confidence            99999999999987432      22233333345555555555543    488999988775

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=2.8e-13  Score=116.35  Aligned_cols=138  Identities=17%  Similarity=0.165  Sum_probs=98.5

Q ss_pred             Cce-EEEEEcCCCCcHHHHHHHHhcC--CCCC--------------cccccceeeeEEEEEEeCCeeEEEEEEeCCCccc
Q psy125            8 PSF-KCVLVGDGGTGKTTFVKRHLTG--EFEK--------------KYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK   70 (385)
Q Consensus         8 ~~~-~i~lvG~~g~GKSTLin~ll~~--~~~~--------------~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~   70 (385)
                      ..+ +|+++|+.|+|||||+.+++..  ....              ......|.+.........+++..++++||||+.+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD   83 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhh
Confidence            445 5999999999999999998642  1110              0112234455555667778889999999999999


Q ss_pred             cccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCCeEEEE
Q psy125           71 FGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDI  148 (385)
Q Consensus        71 ~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  148 (385)
                      |.......+..+|++|+|+|+.+....+....|... .  ..++|.++++||.|...........++....+..+.++
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a-~--~~~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp~  158 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-E--KYKVPRIAFANKMDKTGADLWLVIRTMQERLGARPVVM  158 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHH-H--TTTCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEEC
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHH-H--HcCCCEEEEEecccccccccchhHHHHHHHhCCCeEEE
Confidence            999889999999999999999987666554444332 2  25899999999999876555444455555555555443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=1e-13  Score=112.02  Aligned_cols=115  Identities=18%  Similarity=0.167  Sum_probs=79.2

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc---------ccccccc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL---------RDGYYIQ  296 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~---------~~~~~~~  296 (385)
                      .|+++|.+|||||||++++++. ....+....+++.......+......+.+|||+|......-         ...++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CcceecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            5899999999999999997743 33444555666665555555555667899999996433211         1124578


Q ss_pred             CcEEEEEEeCCChhhhhh------------------------------------------hheeccccCCCchHHHHHHH
Q psy125          297 GQCAIIMFDVTSRITYKN------------------------------------------YYDISAKSNYNFEKPFLWLA  334 (385)
Q Consensus       297 ~~~~ilv~d~~~~~s~~~------------------------------------------~~e~Sak~~~~v~~~f~~l~  334 (385)
                      +|+++++.|.++....+.                                          ++++||++|.||++++++|+
T Consensus        81 ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~  160 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETII  160 (171)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHH
T ss_pred             CcEEEEeecccccccccccccccccccccccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHH
Confidence            999999999987666544                                          68899999999999999999


Q ss_pred             HHHhcCC
Q psy125          335 RKLIGDP  341 (385)
Q Consensus       335 ~~i~~~~  341 (385)
                      +.+.++.
T Consensus       161 ~~l~e~~  167 (171)
T d1mkya1         161 KKLEEKG  167 (171)
T ss_dssp             HHHHHTT
T ss_pred             HhCCCCC
Confidence            9987764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=1.7e-13  Score=111.62  Aligned_cols=115  Identities=15%  Similarity=0.071  Sum_probs=77.7

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc----ccc---cccccCc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG----LRD---GYYIQGQ  298 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~----~~~---~~~~~~~  298 (385)
                      .|.++|.+|||||||++++++...... ....+++.....+........+.+|||||......    +..   .++..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPKIA-PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCEEC-CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCcee-ccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            489999999999999999765443222 22222222233333344455688999999643211    111   2467999


Q ss_pred             EEEEEEeCCChh--hhhh---------------------------------------------hheeccccCCCchHHHH
Q psy125          299 CAIIMFDVTSRI--TYKN---------------------------------------------YYDISAKSNYNFEKPFL  331 (385)
Q Consensus       299 ~~ilv~d~~~~~--s~~~---------------------------------------------~~e~Sak~~~~v~~~f~  331 (385)
                      ++++++|+....  ++..                                             ++++||++|.||+++++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~  161 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKE  161 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHH
Confidence            999999987543  2111                                             79999999999999999


Q ss_pred             HHHHHHhcCC
Q psy125          332 WLARKLIGDP  341 (385)
Q Consensus       332 ~l~~~i~~~~  341 (385)
                      .|.+.+...+
T Consensus       162 ~i~~~l~~~~  171 (180)
T d1udxa2         162 ALHALVRSTP  171 (180)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHhhcC
Confidence            9988886543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=2.8e-14  Score=119.13  Aligned_cols=58  Identities=14%  Similarity=0.261  Sum_probs=38.2

Q ss_pred             eEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          144 QYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       144 ~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      .+....+...+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       122 ~~~~~~~~~LSGGqkQRvaiAraL~~~P~ill-----lDEPts~LD~~~~~~i~~~l~~l~~~  179 (232)
T d2awna2         122 HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL-----LDEPLSNLDAALRVQMRIEISRLHKR  179 (232)
T ss_dssp             ------------------CHHHHHHTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE-----EcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence            34444556677999999999999999999999     99999999999999999999998665

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.43  E-value=4.4e-14  Score=115.04  Aligned_cols=120  Identities=16%  Similarity=0.073  Sum_probs=84.0

Q ss_pred             CCCeeEEEEECCCCCCHHHHHHHHhcCccccccccc-----eeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccccccc
Q psy125          221 DMPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVAT-----LGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYI  295 (385)
Q Consensus       221 ~~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~  295 (385)
                      +.+.++|+++|.+|+|||||+++++........+.+     .|.+..............+.++|++|...|.......+.
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhh
Confidence            346789999999999999999998743221111111     122221111122223456789999999988888888889


Q ss_pred             cCcEEEEEEeCCChhhhhh--------------------------------------------------hheeccccCCC
Q psy125          296 QGQCAIIMFDVTSRITYKN--------------------------------------------------YYDISAKSNYN  325 (385)
Q Consensus       296 ~~~~~ilv~d~~~~~s~~~--------------------------------------------------~~e~Sak~~~~  325 (385)
                      .+|++++|+|+++....+.                                                  ++.+||++|.|
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~g  161 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFG  161 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTT
T ss_pred             hccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcC
Confidence            9999999999998654433                                                  56799999999


Q ss_pred             chHHHHHHHHHHhcC
Q psy125          326 FEKPFLWLARKLIGD  340 (385)
Q Consensus       326 v~~~f~~l~~~i~~~  340 (385)
                      ++++++.|+..+.+.
T Consensus       162 i~eL~~~I~~~l~~~  176 (179)
T d1wb1a4         162 VDELKNLIITTLNNA  176 (179)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhcCCcc
Confidence            999999999887653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=5.5e-14  Score=115.05  Aligned_cols=108  Identities=16%  Similarity=0.136  Sum_probs=78.3

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC---------------ccc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG---------------GLR  290 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---------------~~~  290 (385)
                      .|+++|.+|||||||+|++++..+  ..++++|+|.....+...+    +.+|||||.....               ...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~--~~~~~~g~T~~~~~~~~~~----~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKV--RRGKRPGVTRKIIEIEWKN----HKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCC--SSSSSTTCTTSCEEEEETT----EEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCEeeccccccccc----ceecccCCceeccccccccccccchhhhhhh
Confidence            589999999999999999876554  3456666776555544433    5789999952211               112


Q ss_pred             ccccccCcEEEEEEeCCChhhhhh--------------------------------------------------------
Q psy125          291 DGYYIQGQCAIIMFDVTSRITYKN--------------------------------------------------------  314 (385)
Q Consensus       291 ~~~~~~~~~~ilv~d~~~~~s~~~--------------------------------------------------------  314 (385)
                      ...++.+|++++|+|.+.+.....                                                        
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~  155 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEI  155 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhHHHHHHHHHHHhccccccc
Confidence            224578999999999875432111                                                        


Q ss_pred             ---hheeccccCCCchHHHHHHHHHHhc
Q psy125          315 ---YYDISAKSNYNFEKPFLWLARKLIG  339 (385)
Q Consensus       315 ---~~e~Sak~~~~v~~~f~~l~~~i~~  339 (385)
                         ++++||++|.||++++++|.+.+.+
T Consensus       156 ~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         156 DKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             HHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence               6779999999999999999988764

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.41  E-value=2.5e-13  Score=114.43  Aligned_cols=150  Identities=19%  Similarity=0.222  Sum_probs=94.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCC--CC---------------------------CcccccceeeeEEEEEEeCCeeE
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGE--FE---------------------------KKYVATLGVEVHPLVFHTNRGAI   58 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~--~~---------------------------~~~~~~~g~t~~~~~~~~~~~~~   58 (385)
                      |.++|+++|+-++|||||+.+|+...  ..                           .......|.+.........+...
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            57899999999999999999875310  00                           00112344555555556667788


Q ss_pred             EEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhh-----hcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh---
Q psy125           59 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITY-----KNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV---  130 (385)
Q Consensus        59 ~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~-----~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~---  130 (385)
                      .++++||||+..|...+...+..+|++|+|+|+.+....     .........+.......++++++||+|+.....   
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~  161 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK  161 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHH
Confidence            999999999999988888888999999999999986321     111111222222334557889999999863111   


Q ss_pred             -----hHHHHHHHHhc-----CCeEEEEcCCCCCChH
Q psy125          131 -----KAKSIVFHRKK-----NLQYYDISAKSNYNFE  157 (385)
Q Consensus       131 -----~~~~~~~~~~~-----~~~~~~~Sa~~~~gi~  157 (385)
                           ......+....     ..+++++||..+.|+.
T Consensus       162 ~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         162 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence                 12222333322     2367899999998874

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.40  E-value=5.3e-13  Score=112.98  Aligned_cols=151  Identities=18%  Similarity=0.177  Sum_probs=100.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc--CCCC---------------C------------cccccceeeeEEEEEEeCCee
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLT--GEFE---------------K------------KYVATLGVEVHPLVFHTNRGA   57 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~--~~~~---------------~------------~~~~~~g~t~~~~~~~~~~~~   57 (385)
                      .+.++|+++|+.++|||||+.+|+.  +...               .            ......|+|.+.......+..
T Consensus         4 k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~   83 (239)
T d1f60a3           4 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   83 (239)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCC
Confidence            4568999999999999999999863  1100               0            012345667766667777788


Q ss_pred             EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhh-----hhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh--
Q psy125           58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRIT-----YKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV--  130 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~-----~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~--  130 (385)
                      .+++++||||+.+|...+...+..+|++|+|+|+.....     .+........+.....-.++++++||+|+.+...  
T Consensus        84 ~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~~  163 (239)
T d1f60a3          84 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESR  163 (239)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHH
T ss_pred             EEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHHH
Confidence            999999999999998888888899999999999986521     1111122222222223334788999999864221  


Q ss_pred             ----hHHHHHHHHhcC-----CeEEEEcCCCCCChH
Q psy125          131 ----KAKSIVFHRKKN-----LQYYDISAKSNYNFE  157 (385)
Q Consensus       131 ----~~~~~~~~~~~~-----~~~~~~Sa~~~~gi~  157 (385)
                          ..+...+....+     ..++++|+..+.|+.
T Consensus       164 ~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~  199 (239)
T d1f60a3         164 FQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI  199 (239)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcce
Confidence                122333333322     467899999998864

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.38  E-value=9.4e-13  Score=113.18  Aligned_cols=120  Identities=13%  Similarity=0.103  Sum_probs=79.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccch-------h--h
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLR-------D--G   77 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~-------~--~   77 (385)
                      ...++|+|+|.+|||||||+|.|++.... .+.+..+.|+.+........+..+.++||||........       .  .
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~-~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCce-eecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            45799999999999999999998876544 344667788877777666677889999999975322211       1  1


Q ss_pred             hhccCcEEEEEEeCCChh-hhh--cHHHHHHHHHHhcCCCCEEEEEeCCCCcc
Q psy125           78 YYIQGQCAIIMFDVTSRI-TYK--NVPNWHRDLVRVCENIPIVLCGNKVDIKD  127 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~-~~~--~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~  127 (385)
                      .....+++++|++++... +..  ....++..+....-..++++|+||+|...
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence            124578888998886542 111  11122333322112357899999999764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.38  E-value=3.4e-13  Score=110.43  Aligned_cols=114  Identities=19%  Similarity=0.217  Sum_probs=73.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc-----------
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD-----------  291 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-----------  291 (385)
                      ..+||+++|.+|||||||++++++.... .+....+++...........+..+.++||+|......++.           
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKERA-LVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTTE-EECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCcc-eeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence            3589999999999999999998754421 1222223333332222222234578999999754333222           


Q ss_pred             -cccccCcEEEEEEeCCChhhhhh-------------------------------------------------hheeccc
Q psy125          292 -GYYIQGQCAIIMFDVTSRITYKN-------------------------------------------------YYDISAK  321 (385)
Q Consensus       292 -~~~~~~~~~ilv~d~~~~~s~~~-------------------------------------------------~~e~Sak  321 (385)
                       .+++.+|++++|+|+..+..-+.                                                 ++++||+
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~  165 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSAD  165 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTT
T ss_pred             HHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCC
Confidence             24579999999999987644433                                                 5679999


Q ss_pred             cCCCchHHHHHHHHHH
Q psy125          322 SNYNFEKPFLWLARKL  337 (385)
Q Consensus       322 ~~~~v~~~f~~l~~~i  337 (385)
                      +|.||+++|.+|.+.+
T Consensus       166 ~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         166 KGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999999997654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=8.8e-14  Score=116.52  Aligned_cols=151  Identities=14%  Similarity=0.141  Sum_probs=91.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      .++|+|++|||||||++.+.+                  ...++.|.+.+...|.......+ ...+++.|..       
T Consensus        34 ~~~liGpsGaGKSTLl~~i~G------------------l~~p~sG~I~i~g~~i~~~~~~~-r~ig~v~Q~~-------   87 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAG------------------LEEPTEGRIYFGDRDVTYLPPKD-RNISMVFQSY-------   87 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT------------------SSCCSEEEEEETTEECTTSCGGG-GTEEEEEC---------
T ss_pred             EEEEECCCCChHHHHHHHHHc------------------CCCCCCCEEEEcceecccCCccc-ceEEEEeech-------
Confidence            579999999999999999777                  34445566666666665433221 1122222221       


Q ss_pred             CCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125           91 VTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                          .-+..+ .....+.-. .      ...+.+  ..+......++....+. .+....+...+|+++++..|++++..
T Consensus        88 ----~l~~~l-tv~enl~~~-~------~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~  153 (239)
T d1v43a3          88 ----AVWPHM-TVYENIAFP-L------KIKKFP--KDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV  153 (239)
T ss_dssp             --------CC-CHHHHHHTT-C------C--CCC--HHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred             ----hhcccc-hHHHHHHHH-H------HHcCCC--HHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence                111110 011111100 0      011222  22222233333333333 33334466788999999999999999


Q ss_pred             CCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          170 DPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       170 ~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      +|++++     +|||+.++|+..+..+.+.+++...+
T Consensus       154 ~P~iLl-----lDEPts~LD~~~~~~i~~ll~~l~~~  185 (239)
T d1v43a3         154 EPDVLL-----MDEPLSNLDAKLRVAMRAEIKKLQQK  185 (239)
T ss_dssp             CCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcee-----ecCCcccCCHHHHHHHHHHHHHHHHh
Confidence            999999     99999999999999999999998655

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.37  E-value=2.2e-13  Score=115.99  Aligned_cols=152  Identities=18%  Similarity=0.150  Sum_probs=82.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc--CCCC---------------------------CcccccceeeeEEEEEEeCCee
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLT--GEFE---------------------------KKYVATLGVEVHPLVFHTNRGA   57 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~--~~~~---------------------------~~~~~~~g~t~~~~~~~~~~~~   57 (385)
                      .+.+.|+++|+.++|||||+.+|+.  +...                           .......|.+.+.......+..
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            3467899999999999999999853  1110                           0111223334443344445566


Q ss_pred             EEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhh-----h-cHHHHHHHHHHhcCCCCEEEEEeCCCCcchh--
Q psy125           58 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITY-----K-NVPNWHRDLVRVCENIPIVLCGNKVDIKDRK--  129 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~-----~-~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~--  129 (385)
                      ..+.++||||+..+..........+|++++|+|+......     . .....+ .+.....-.++++++||+|+....  
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-~l~~~~~i~~iiv~iNKmD~~~~~~~  180 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLARTQGINHLVVVINKMDEPSVQWS  180 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHH-HHHHHcCCCeEEEEEEcCCCCccchh
Confidence            7899999999999888888888999999999999875311     1 112222 222222334588999999985321  


Q ss_pred             --h----hHHHHHHHHh-c------CCeEEEEcCCCCCChHHH
Q psy125          130 --V----KAKSIVFHRK-K------NLQYYDISAKSNYNFEKP  159 (385)
Q Consensus       130 --~----~~~~~~~~~~-~------~~~~~~~Sa~~~~gi~~l  159 (385)
                        .    ..+...+... .      ..+++++||++|.|+.++
T Consensus       181 e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~  223 (245)
T d1r5ba3         181 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  223 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccc
Confidence              1    1112212111 1      237899999999998653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=4.3e-13  Score=111.82  Aligned_cols=85  Identities=19%  Similarity=0.276  Sum_probs=69.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccC-cccccccccCcEEEEEE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG-GLRDGYYIQGQCAIIMF  304 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-~~~~~~~~~~~~~ilv~  304 (385)
                      +|+++|.+|||||||+++++.+.+... .++.+.++....+. +...+.+.+||++|+++++ ..+..+++.++++++||
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            589999999999999999998887655 46766666554332 4556789999999998875 46677899999999999


Q ss_pred             eCCChhhh
Q psy125          305 DVTSRITY  312 (385)
Q Consensus       305 d~~~~~s~  312 (385)
                      |+++..++
T Consensus        80 D~~d~~~~   87 (207)
T d2fh5b1          80 DSAAFQRE   87 (207)
T ss_dssp             ETTTHHHH
T ss_pred             Eccccccc
Confidence            99998775

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.36  E-value=1.4e-13  Score=115.08  Aligned_cols=149  Identities=21%  Similarity=0.264  Sum_probs=94.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhhhhccCcEEEEEEe
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFD   90 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d   90 (385)
                      .++|+|++|||||||++.+.+                  ...++.|.+.+...|.......+ ...+++.|...+     
T Consensus        26 ~~~liGpnGaGKSTll~~i~G------------------l~~p~~G~I~~~G~~i~~~~~~~-r~ig~v~Q~~~l-----   81 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAG------------------IVKPDRGEVRLNGADITPLPPER-RGIGFVPQDYAL-----   81 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT------------------SSCCSEEEEEETTEECTTSCTTT-SCCBCCCSSCCC-----
T ss_pred             EEEEECCCCChHHHHHHHHHc------------------CCCCCceEEEECCEECCcCCHHH-cCceeeccchhh-----
Confidence            568999999999999999777                  33445566666666665544322 223444443211     


Q ss_pred             CCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhHHHHHHHHhcCC-eEEEEcCCCCCChHHHHHHHHHHHhc
Q psy125           91 VTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKLIG  169 (385)
Q Consensus        91 ~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~l~~  169 (385)
                       ....   .+   .+.+. . .       +.+.+  ..+......++....+. .+....+...+|+++++..|++++..
T Consensus        82 -~~~l---tV---~enl~-~-~-------l~~~~--~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~  143 (240)
T d2onka1          82 -FPHL---SV---YRNIA-Y-G-------LRNVE--RVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI  143 (240)
T ss_dssp             -CTTS---CH---HHHHH-T-T-------CTTSC--HHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred             -cccc---hh---hHhhh-h-h-------hcccC--HHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence             1110   11   11111 0 1       01111  11112223334433333 33444566788999999999999999


Q ss_pred             CCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          170 DPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       170 ~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      +|++++     +|||+.++|+..+..+.+.+++...+
T Consensus       144 ~P~ill-----lDEPts~LD~~~~~~i~~~i~~l~~~  175 (240)
T d2onka1         144 QPRLLL-----LDEPLSAVDLKTKGVLMEELRFVQRE  175 (240)
T ss_dssp             CCSSBE-----EESTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCceE-----ecCccccCCHHHHHHHHHHHHHHHHh
Confidence            999999     99999999999999999999988655

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=3.4e-12  Score=116.55  Aligned_cols=156  Identities=16%  Similarity=0.178  Sum_probs=91.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcc---cccceeeeEEEEEEeCCeeEEEEEEeCCCccccccchhh-----hh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY---VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG-----YY   79 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~---~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~-----~~   79 (385)
                      ..++|+|+|.+|||||||+|+|++.......   ....++|++...+.. .+.-.+.+|||||..........     .+
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~-~~~~~~~l~DtPG~~~~~~~~~~~~~~~~~  133 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKH-PNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  133 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEEC-SSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeec-cCCCeEEEEeCCCcccccccHHHHHHHhhh
Confidence            4689999999999999999998875443222   223345555544433 23345779999997643332222     24


Q ss_pred             ccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcch-------------hhhHHH----HHHHHhc-
Q psy125           80 IQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR-------------KVKAKS----IVFHRKK-  141 (385)
Q Consensus        80 ~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~-------------~~~~~~----~~~~~~~-  141 (385)
                      ..+|.+|++.|..-...  . ..+...+..  .++|+++|.||+|....             +....+    ....... 
T Consensus       134 ~~~d~~l~~~~~~~~~~--d-~~l~~~l~~--~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~~  208 (400)
T d1tq4a_         134 YEYDFFIIISATRFKKN--D-IDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENG  208 (400)
T ss_dssp             GGCSEEEEEESSCCCHH--H-HHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTT
T ss_pred             hcceEEEEecCCCCCHH--H-HHHHHHHHH--cCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHcC
Confidence            56788887776432211  1 123333433  47899999999995311             001111    1122222 


Q ss_pred             --CCeEEEEcCCC--CCChHHHHHHHHHHHhc
Q psy125          142 --NLQYYDISAKS--NYNFEKPFLWLARKLIG  169 (385)
Q Consensus       142 --~~~~~~~Sa~~--~~gi~~l~~~i~~~l~~  169 (385)
                        ..+++.+|...  ..|+.++...+.+.+..
T Consensus       209 ~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         209 IAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             CSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             CCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence              23678888754  44788888888777643

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.35  E-value=3.3e-13  Score=113.19  Aligned_cols=53  Identities=17%  Similarity=0.299  Sum_probs=48.9

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      .+...+|+++++..|++++..+|++++     +|||+.++|+..+..+.+.+++...+
T Consensus       136 ~p~~LSGGqkQRv~IAraL~~~P~iLl-----lDEPt~~LD~~~~~~i~~~l~~l~~~  188 (240)
T d1g2912         136 KPRELSGGQRQRVALGRAIVRKPQVFL-----MDEPLSNLDAKLRVRMRAELKKLQRQ  188 (240)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHTCCSEEE-----EECTTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEE-----ecCCCcccCHHHHHHHHHHHHHHHhc
Confidence            356678999999999999999999999     99999999999999999999988665

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.33  E-value=3.5e-13  Score=113.52  Aligned_cols=53  Identities=23%  Similarity=0.233  Sum_probs=48.7

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      .+.+.+|+++++..|++++..+|++++     +|||+.++|+..+..+.+.+++...+
T Consensus       130 ~~~~lSgG~~qrv~iA~al~~~p~ill-----LDEPt~gLD~~~~~~i~~~i~~~~~~  182 (238)
T d1vpla_         130 RVSTYSKGMVRKLLIARALMVNPRLAI-----LDEPTSGLDVLNAREVRKILKQASQE  182 (238)
T ss_dssp             BGGGCCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             hhhhCCHHHHHHHHHHHHHhcCCCEEE-----ecCCCCCCCHHHHHHHHHHHHHHHhc
Confidence            356778999999999999999999999     99999999999999999999987655

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.32  E-value=6.1e-13  Score=110.89  Aligned_cols=52  Identities=21%  Similarity=0.213  Sum_probs=48.5

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      +...+|+++++..|++++..+|++++     +|||++++|+..+..+.+.+++...+
T Consensus       143 p~~LSGGqkQRvaIAraL~~~P~lLl-----lDEPTs~LD~~~~~~i~~~l~~l~~~  194 (230)
T d1l2ta_         143 PNQLSGGQQQRVAIARALANNPPIIL-----ADQPTGALDSKTGEKIMQLLKKLNEE  194 (230)
T ss_dssp             GGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHHhhhhcCCCEEE-----ecCCccccCHHHHHHHHHHHHHHHHh
Confidence            45678999999999999999999999     99999999999999999999998765

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=3.6e-13  Score=112.97  Aligned_cols=55  Identities=20%  Similarity=0.188  Sum_probs=50.0

Q ss_pred             EEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          147 DISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       147 ~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+...+|+++++..|++++..+|++++     +|||+.++|+..+..+.+.+++...+
T Consensus       135 ~~~~~~LSGG~~QRvaiAraL~~~P~lLl-----lDEPt~~LD~~~~~~i~~~l~~l~~~  189 (240)
T d3dhwc1         135 DSYPSNLSGGQKQRVAIARALASNPKVLL-----CDEATSALDPATTRSILELLKDINRR  189 (240)
T ss_dssp             SSCBSCCCHHHHHHHHHHHHHHTCCSEEE-----EESGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             hCChhhCCHHHHHHHHHhhhhccCCCeEE-----eccccccCCHHHhhHHHHHHHHHHhc
Confidence            33456677999999999999999999999     99999999999999999999998765

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.31  E-value=3.5e-12  Score=109.14  Aligned_cols=113  Identities=21%  Similarity=0.250  Sum_probs=83.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC--CCCc--c------------cccceeeeEEEEEEeCCeeEEEEEEeCCCccccccc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGE--FEKK--Y------------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL   74 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~--~~~~--~------------~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~   74 (385)
                      +|+++|+.|+|||||+.+++...  ....  +            ....|.|.........+.+.+++++||||+.+|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            59999999999999999986321  1000  0            012334555555666777889999999999999888


Q ss_pred             hhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125           75 RDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK  126 (385)
Q Consensus        75 ~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~  126 (385)
                      ....++.+|++|+|+|+.+....+....|... ..  .++|.++++||+|..
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~-~~--~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGTERAWTVA-ER--LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH--TTCCEEEEEECGGGC
T ss_pred             hhhhhcccCceEEEeeccCCccchhHHHHHhh-hh--ccccccccccccccc
Confidence            88889999999999999987655544444322 22  589999999999964

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.30  E-value=3.4e-13  Score=113.91  Aligned_cols=53  Identities=17%  Similarity=0.265  Sum_probs=48.7

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      .+.+.+|+++++..|++++..+|++++     +|||+.++|+..+..+.+.+++...+
T Consensus       136 ~~~~LSGG~~Qrv~iAraL~~~P~lLl-----lDEPt~gLD~~~~~~i~~~i~~l~~~  188 (240)
T d1ji0a_         136 LGGTLSGGEQQMLAIGRALMSRPKLLM-----MDEPSLGLAPILVSEVFEVIQKINQE  188 (240)
T ss_dssp             BSSSSCHHHHHHHHHHHHHTTCCSEEE-----EECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             chhhCCHHHHHHHHHHHHHHhCCCEee-----ecCCCcCCCHHHHHHHHHHHHHHHhC
Confidence            355678999999999999999999999     99999999999999999999987655

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.30  E-value=5.1e-13  Score=111.04  Aligned_cols=54  Identities=22%  Similarity=0.247  Sum_probs=49.6

Q ss_pred             EcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          148 ISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       148 ~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ..+.+.+|+++++..|++++..+|++++     +|||+.++|+..+..+.+.+++...+
T Consensus       123 ~~~~~LSGG~~QRvaiAraL~~~P~iLl-----lDEPts~LD~~~~~~i~~~l~~l~~~  176 (229)
T d3d31a2         123 RNPLTLSGGEQQRVALARALVTNPKILL-----LDEPLSALDPRTQENAREMLSVLHKK  176 (229)
T ss_dssp             SCGGGSCHHHHHHHHHHHHTTSCCSEEE-----EESSSTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CChhhCCHHHhcchhhhhhhhccCCcee-----ecCCCcCCCHHHHHHHHHHHHHHHhc
Confidence            3456788999999999999999999999     99999999999999999999998665

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.29  E-value=1.2e-12  Score=107.02  Aligned_cols=113  Identities=18%  Similarity=0.111  Sum_probs=72.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCccccccccceeeEEE--EEEEEeCCeeEEEEEeeCCCcccc----Cccccc---cccc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVH--PLVFHTNRGAIRFNVWDTAGQEKF----GGLRDG---YYIQ  296 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~i~Dt~G~~~~----~~~~~~---~~~~  296 (385)
                      +|.++|.+|||||||+|++.+... .... ..++|..  ....... .+..+.+|||||+.+.    ..+...   .+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~-~~~~-~~~~T~~~~~~~~~~~-~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~   79 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKP-KIAD-YHFTTLVPNLGMVETD-DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER   79 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECC-EESS-TTSSCCCCCEEEEECS-SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCC-ceec-CCCceEeeeeceeEec-CCcEEEEecCCCcccCchHHHHHHHHHHHHHHH
Confidence            589999999999999999764432 2111 1122221  1122222 2335789999996322    112112   2456


Q ss_pred             CcEEEEEEeCCChhhhhh---------------------------------------------------hheeccccCCC
Q psy125          297 GQCAIIMFDVTSRITYKN---------------------------------------------------YYDISAKSNYN  325 (385)
Q Consensus       297 ~~~~ilv~d~~~~~s~~~---------------------------------------------------~~e~Sak~~~~  325 (385)
                      ++.++++.+.........                                                   ++.+||++|.|
T Consensus        80 ~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~g~G  159 (185)
T d1lnza2          80 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREG  159 (185)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSST
T ss_pred             hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhccCCcEEEEECCCCCC
Confidence            777877776654332221                                                   78999999999


Q ss_pred             chHHHHHHHHHHhcCC
Q psy125          326 FEKPFLWLARKLIGDP  341 (385)
Q Consensus       326 v~~~f~~l~~~i~~~~  341 (385)
                      |++++.+|.+.+.+.+
T Consensus       160 i~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         160 LRELLFEVANQLENTP  175 (185)
T ss_dssp             THHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhhhhCC
Confidence            9999999999886544

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.29  E-value=1.6e-13  Score=117.09  Aligned_cols=53  Identities=15%  Similarity=0.181  Sum_probs=48.6

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      .+...+|+++++..|++++..+|++++     +|||+.++|+..+..+.+.+++...+
T Consensus       147 ~~~~LSgG~~Qrv~iAraL~~~P~lli-----lDEPt~gLD~~~~~~i~~~i~~l~~~  199 (254)
T d1g6ha_         147 KAGELSGGQMKLVEIGRALMTNPKMIV-----MDEPIAGVAPGLAHDIFNHVLELKAK  199 (254)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHTCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             chhhCCcHHHHHHHHHHHHHhCcCchh-----hcCCcccCCHHHHHHHHHHHHHHHHC
Confidence            456788999999999999999999999     99999999999999999999987554

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.26  E-value=2e-12  Score=108.17  Aligned_cols=68  Identities=19%  Similarity=0.206  Sum_probs=54.9

Q ss_pred             HHHHHHhcCC-eEEEEcCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          134 SIVFHRKKNL-QYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       134 ~~~~~~~~~~-~~~~~Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ..++....+. .+....+...+|+++++..|++++..+|++++     +|||+.++|+..+..+.+.+++...+
T Consensus       121 v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~lll-----lDEPt~~LD~~~~~~i~~~i~~l~~~  189 (242)
T d1oxxk2         121 VEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLL-----LDEPFSNLDARMRDSARALVKEVQSR  189 (242)
T ss_dssp             HHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTSCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhccccee-----ecCCccCCCHHHHHHHHHHHHHHHhc
Confidence            3334444443 33334456678999999999999999999999     99999999999999999999998665

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.21  E-value=1.5e-11  Score=108.76  Aligned_cols=116  Identities=17%  Similarity=0.227  Sum_probs=80.7

Q ss_pred             CceE-EEEEcCCCCcHHHHHHHHhcCC--CCC------------cccccceeeeEEEEEE----------------eCCe
Q psy125            8 PSFK-CVLVGDGGTGKTTFVKRHLTGE--FEK------------KYVATLGVEVHPLVFH----------------TNRG   56 (385)
Q Consensus         8 ~~~~-i~lvG~~g~GKSTLin~ll~~~--~~~------------~~~~~~g~t~~~~~~~----------------~~~~   56 (385)
                      ..+| |+|+|+.++|||||+.+|+...  ...            ......|.|.......                .+++
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            3465 9999999999999999987311  000            0001122222221111                1345


Q ss_pred             eEEEEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCc
Q psy125           57 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIK  126 (385)
Q Consensus        57 ~~~~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~  126 (385)
                      ...++++||||+.++.......++-+|++|+|+|+.+....+....|.....   .++|+++++||+|..
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHH---cCCCeEEEEECcccc
Confidence            7889999999999999888888899999999999998876665444444332   689999999999964

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.21  E-value=1.1e-11  Score=104.55  Aligned_cols=88  Identities=20%  Similarity=0.285  Sum_probs=58.5

Q ss_pred             EEEECCCCCCHHHHHHHHhcCccccc----cccceeeEEEEE------------EEEeCCeeEEEEEeeCCCccccCccc
Q psy125          227 CVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPL------------VFHTNRGAIRFNVWDTAGQEKFGGLR  290 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~~~~~~~~----~~~~~~~~~~~~------------~~~~~~~~~~l~i~Dt~G~~~~~~~~  290 (385)
                      |+++|.+++|||||+++++.......    .....+......            ...+......+.++||||...|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~~~   87 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLR   87 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSB
T ss_pred             EEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccccc
Confidence            99999999999999999874321110    000001110000            00122334568899999999998888


Q ss_pred             ccccccCcEEEEEEeCCChhhhhh
Q psy125          291 DGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       291 ~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      ...+..||++|+|+|+.+.-.-+.
T Consensus        88 ~~~~~~~D~~ilVvda~~g~~~~~  111 (227)
T d1g7sa4          88 KRGGALADLAILIVDINEGFKPQT  111 (227)
T ss_dssp             CSSSBSCSEEEEEEETTTCCCHHH
T ss_pred             hhcccccceEEEEEecccCcccch
Confidence            888999999999999987544433

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.20  E-value=1.3e-11  Score=101.41  Aligned_cols=52  Identities=15%  Similarity=0.113  Sum_probs=47.4

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ..+.+|+++++..|++++..+|++++     +|||+.++|+..+..+.+.+.+...+
T Consensus       123 ~~~LSgG~~qrv~ia~al~~~~~lll-----lDEPt~gLD~~~~~~i~~~l~~~~~~  174 (200)
T d1sgwa_         123 LGELSQGTIRRVQLASTLLVNAEIYV-----LDDPVVAIDEDSKHKVLKSILEILKE  174 (200)
T ss_dssp             GGGSCHHHHHHHHHHHHTTSCCSEEE-----EESTTTTSCTTTHHHHHHHHHHHHHH
T ss_pred             cCcCCCcHHHHHHHHHHHhcCCCEEE-----EcCcccccCHHHHHHHHHHHHHHHhC
Confidence            34678999999999999999999999     99999999999999999988887655

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.19  E-value=3.6e-11  Score=98.86  Aligned_cols=110  Identities=10%  Similarity=0.107  Sum_probs=70.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc-------------
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD-------------  291 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~-------------  291 (385)
                      -+|+++|.+|||||||++++++......+....+++...........   +.+.|++|.........             
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  100 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDE---LHFVDVPGYGFAKVSKSEREAWGRMIETYI  100 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTT---EEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccccc---ceEEEEEeeccccccccccchhhhHHhhhh
Confidence            38999999999999999998865554455555555555444444433   34677766432221111             


Q ss_pred             cccccCcEEEEEEeCCChhhhhh-----------------------------------------------hheeccccCC
Q psy125          292 GYYIQGQCAIIMFDVTSRITYKN-----------------------------------------------YYDISAKSNY  324 (385)
Q Consensus       292 ~~~~~~~~~ilv~d~~~~~s~~~-----------------------------------------------~~e~Sak~~~  324 (385)
                      ..+..++++++|+|.+++..-++                                               ++.+||++|.
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~  180 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKK  180 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCT
T ss_pred             ccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCCCC
Confidence            23457899999999986543322                                               6889999999


Q ss_pred             CchHHHHHHHHHH
Q psy125          325 NFEKPFLWLARKL  337 (385)
Q Consensus       325 ~v~~~f~~l~~~i  337 (385)
                      ||+++|.+|.+.+
T Consensus       181 gi~el~~~i~~~l  193 (195)
T d1svia_         181 GKDEAWGAIKKMI  193 (195)
T ss_dssp             THHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998876

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=1.6e-11  Score=99.46  Aligned_cols=117  Identities=17%  Similarity=0.120  Sum_probs=75.7

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccc---------cCccccccc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK---------FGGLRDGYY  294 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---------~~~~~~~~~  294 (385)
                      .-.|+++|.+|||||||+|++++..... .....+++..............+..+|++|...         .......+.
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLGQKISI-TSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSI   83 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSEEE-CCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCcee-eccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccch
Confidence            3468999999999999999988654322 222222222222222222233456788887532         122223345


Q ss_pred             ccCcEEEEEEeCCChhhhhh--------------------------------------------hheeccccCCCchHHH
Q psy125          295 IQGQCAIIMFDVTSRITYKN--------------------------------------------YYDISAKSNYNFEKPF  330 (385)
Q Consensus       295 ~~~~~~ilv~d~~~~~s~~~--------------------------------------------~~e~Sak~~~~v~~~f  330 (385)
                      ..+++++++.|.++......                                            ++++||++|.|+++++
T Consensus        84 ~~~~~~l~~~d~~~~~~~~~~~~~~l~~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~  163 (179)
T d1egaa1          84 GDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIA  163 (179)
T ss_dssp             CCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHH
T ss_pred             hhcceeEEEEecCccchhHHHHHHHhhhccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHH
Confidence            67888899999886443322                                            7889999999999999


Q ss_pred             HHHHHHHhcCC
Q psy125          331 LWLARKLIGDP  341 (385)
Q Consensus       331 ~~l~~~i~~~~  341 (385)
                      ++|++.+.+.+
T Consensus       164 ~~i~~~lpe~~  174 (179)
T d1egaa1         164 AIVRKHLPEAT  174 (179)
T ss_dssp             HHHHTTCCBCC
T ss_pred             HHHHHhCCCCC
Confidence            99998775543

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.11  E-value=3.8e-11  Score=102.06  Aligned_cols=52  Identities=15%  Similarity=0.231  Sum_probs=48.2

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      +...+|+++++..|++++..+|++++     +|||+.++|+..+..+.+.+++...+
T Consensus       147 p~~LSGG~~QRv~iAraL~~~P~lli-----lDEPT~gLD~~~~~~i~~ll~~l~~~  198 (258)
T d1b0ua_         147 PVHLSGGQQQRVSIARALAMEPDVLL-----FDEPTSALDPELVGEVLRIMQQLAEE  198 (258)
T ss_dssp             GGGSCHHHHHHHHHHHHHHTCCSEEE-----EESTTTTSCHHHHHHHHHHHHHHHHT
T ss_pred             cccccHHHHHHHHHHHHHhcCCCEEE-----eccccccCCHHHHHHHHHhhhhhccc
Confidence            45678999999999999999999999     99999999999999999999987655

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.09  E-value=5.3e-12  Score=106.59  Aligned_cols=50  Identities=16%  Similarity=0.232  Sum_probs=46.2

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      ....+|+++++..|++++..+|++++     +|||++++|+.....+.+.+++..
T Consensus       137 g~~LSGGqkQRv~iARal~~~p~ili-----lDEpts~LD~~~~~~i~~~l~~l~  186 (242)
T d1mv5a_         137 GVKISGGQRQRLAIARAFLRNPKILM-----LDEATASLDSESESMVQKALDSLM  186 (242)
T ss_dssp             SBCCCHHHHHHHHHHHHHHHCCSEEE-----EECCSCSSCSSSCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEE-----ecCCccccCHHHHHHHHHHHHHHc
Confidence            34578999999999999999999999     999999999999999999998764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=5.7e-12  Score=107.00  Aligned_cols=52  Identities=27%  Similarity=0.246  Sum_probs=46.8

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQE  205 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~  205 (385)
                      .....+|+++++..|++++..+|++++     +|||++++|+.....+.+.+++...
T Consensus       148 ~~~~LSGGqkQRvaiARal~~~p~ili-----lDEpTs~LD~~~~~~i~~~l~~l~~  199 (251)
T d1jj7a_         148 AGSQLSGGQRQAVALARALIRKPCVLI-----LDDATSALDANSQLQVEQLLYESPE  199 (251)
T ss_dssp             SCSSSCHHHHHHHHHHHHHTTCCSEEE-----EESTTTTCCHHHHHHHHHHHHTCGG
T ss_pred             cCccCChhHceEEEEeeccccCCcEEE-----ecCcCcccChhhHHHHHHHHHHHhh
Confidence            445688999999999999999999999     9999999999999999998876543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=2.1e-12  Score=108.86  Aligned_cols=51  Identities=12%  Similarity=0.175  Sum_probs=46.8

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      .....+|+++++..|++++..+|++++     +|||++++|+.....+.+.+++..
T Consensus       136 ~g~~LSGGq~QRvalARal~~~p~ili-----lDEpts~LD~~~~~~i~~~l~~l~  186 (241)
T d2pmka1         136 QGAGLSGGQRQRIAIARALVNNPKILI-----FDEATSALDYESEHVIMRNMHKIC  186 (241)
T ss_dssp             TTTCCCHHHHHHHHHHHHHTTCCSEEE-----ECCCCSCCCHHHHHHHHHHHHHHH
T ss_pred             CCCccCHHHHHHHhhhhhhhcccchhh-----hhCCccccCHHHHHHHHHHHHHHh
Confidence            456778999999999999999999999     999999999999999999888764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.07  E-value=2.2e-10  Score=94.01  Aligned_cols=116  Identities=16%  Similarity=0.064  Sum_probs=79.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCcccc-c------cccceeeEEEEEEE-----------------EeCCeeEEEEEe
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEK-K------YVATLGVEVHPLVF-----------------HTNRGAIRFNVW  278 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~-----------------~~~~~~~~l~i~  278 (385)
                      ..++|+++|..++|||||++++++..... .      .....+........                 ........+.++
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   83 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI   83 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeee
Confidence            45799999999999999999986421100 0      00011111111100                 001123568899


Q ss_pred             eCCCccccCcccccccccCcEEEEEEeCCChhhhh---h-----------------------------------------
Q psy125          279 DTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK---N-----------------------------------------  314 (385)
Q Consensus       279 Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~---~-----------------------------------------  314 (385)
                      ||||...|......-+..+|++++|.|+.+...-+   +                                         
T Consensus        84 DtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~  163 (195)
T d1kk1a3          84 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIEG  163 (195)
T ss_dssp             ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             ccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHHHHHHHHHHHhcc
Confidence            99999988877777788999999999998863211   1                                         


Q ss_pred             -------hheeccccCCCchHHHHHHHHHHh
Q psy125          315 -------YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       315 -------~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                             |+.+||++|.|++++++.+...|+
T Consensus       164 ~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         164 TVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence                   578999999999999999988663

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.04  E-value=7e-11  Score=96.59  Aligned_cols=91  Identities=13%  Similarity=0.096  Sum_probs=67.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC-------cc-------ccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG-------EF-------EKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGG  288 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~-------~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~  288 (385)
                      +.++|+++|..++|||||+++++..       .+       ........|.|.....+.+......+.++||||...|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            4589999999999999999987631       00       011123335566666666666677889999999998877


Q ss_pred             ccccccccCcEEEEEEeCCChhhhh
Q psy125          289 LRDGYYIQGQCAIIMFDVTSRITYK  313 (385)
Q Consensus       289 ~~~~~~~~~~~~ilv~d~~~~~s~~  313 (385)
                      ....-...+|++|||+|+.+.-.-|
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~Q  106 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQ  106 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHH
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchh
Confidence            6666778999999999999864433

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.02  E-value=4.1e-12  Score=108.03  Aligned_cols=51  Identities=20%  Similarity=0.195  Sum_probs=46.6

Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          149 SAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      .....+|+++++..||+++..+|++++     +|||++++|+.....+.+.+++..
T Consensus       149 ~~~~LSGGqkQRvaiARal~~~p~ili-----lDEpts~LD~~~~~~i~~~l~~l~  199 (253)
T d3b60a1         149 NGVLLSGGQRQRIAIARALLRDSPILI-----LDEATSALDTESERAIQAALDELQ  199 (253)
T ss_dssp             TSCSSCHHHHHHHHHHHHHHHCCSEEE-----EETTTSSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHhcCCCEEE-----eccccccCCHHHHHHHHHHHHHhc
Confidence            345678999999999999999999999     999999999999999999988764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.00  E-value=5.6e-10  Score=92.28  Aligned_cols=117  Identities=17%  Similarity=0.104  Sum_probs=78.8

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCcc-------ccccccceeeEEEEEEEEe----------------------CCee
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEF-------EKKYVATLGVEVHPLVFHT----------------------NRGA  272 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~----------------------~~~~  272 (385)
                      .+.++|+++|..++|||||+++++...-       ........|..........                      ....
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFL   85 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEE
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccce
Confidence            4568999999999999999999874210       0000000111110000000                      0113


Q ss_pred             EEEEEeeCCCccccCcccccccccCcEEEEEEeCCChh----hhhh----------------------------------
Q psy125          273 IRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRI----TYKN----------------------------------  314 (385)
Q Consensus       273 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~----s~~~----------------------------------  314 (385)
                      ..+.++||||...|....-.-+..+|++|+|.|+.+..    +-+.                                  
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~~~  165 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQI  165 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHHHH
Confidence            46899999999988776666678899999999998753    1111                                  


Q ss_pred             -------------hheeccccCCCchHHHHHHHHHHh
Q psy125          315 -------------YYDISAKSNYNFEKPFLWLARKLI  338 (385)
Q Consensus       315 -------------~~e~Sak~~~~v~~~f~~l~~~i~  338 (385)
                                   |+.+||++|.||+++++.|...|+
T Consensus       166 ~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         166 KQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence                         688999999999999999998764

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.00  E-value=1.9e-10  Score=97.83  Aligned_cols=110  Identities=15%  Similarity=0.026  Sum_probs=63.5

Q ss_pred             EEEEEEeCCCccccccchhh---h--hccCcEEEEEEeCCChhhhhcHHH-HH-HHHHHhcCCCCEEEEEeCCCCcchhh
Q psy125           58 IRFNVWDTAGQEKFGGLRDG---Y--YIQGQCAIIMFDVTSRITYKNVPN-WH-RDLVRVCENIPIVLCGNKVDIKDRKV  130 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~~~---~--~~~~d~illV~d~~~~~~~~~~~~-~~-~~l~~~~~~~~~ilv~nK~Dl~~~~~  130 (385)
                      ..+.++|+||+.........   .  ....+.+++++|+......+.... .+ .......-..|.++++||+|+.....
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~D~~~~~~  174 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEE  174 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHHH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeeccccccHHH
Confidence            34888999998643221111   1  124567888888754332222111 11 11111113678999999999875432


Q ss_pred             hHHHHH----------------------------H-H-HhcCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125          131 KAKSIV----------------------------F-H-RKKNLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       131 ~~~~~~----------------------------~-~-~~~~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                      ......                            . . .....+++++||+++.|+++++..|.+..
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         175 KERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            111110                            0 0 11345789999999999999998887753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.9e-10  Score=96.35  Aligned_cols=53  Identities=21%  Similarity=0.113  Sum_probs=46.8

Q ss_pred             cCCCCCChHHHHHHHHHHHhc-------CCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHHHh
Q psy125          149 SAKSNYNFEKPFLWLARKLIG-------DPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQET  206 (385)
Q Consensus       149 Sa~~~~gi~~l~~~i~~~l~~-------~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~~~  206 (385)
                      ...+.+|+++++..|++++.+       .|++++     +|||+.++|+..+..+.+.+++...+
T Consensus       122 ~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~lll-----lDEPt~gLD~~~~~~i~~~i~~l~~~  181 (231)
T d1l7vc_         122 STNQLSGGEWQRVRLAAVVLQITPQANPAGQLLL-----LDEPMNSLDVAQQSALDKILSALCQQ  181 (231)
T ss_dssp             BGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEE-----ESSCSTTCCHHHHHHHHHHHHHHHHT
T ss_pred             ChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEE-----EcCCCCCCCHHHHHHHHHHHHHHHhC
Confidence            455678999999999999986       668999     99999999999999999999987655

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.93  E-value=8.6e-12  Score=105.83  Aligned_cols=50  Identities=20%  Similarity=0.184  Sum_probs=45.6

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      ....+|+++++..|+|++..+|++++     +|||++++|+.....+.+.+.+..
T Consensus       152 g~~LSgGq~QRi~iARal~~~p~ili-----lDEpts~LD~~t~~~i~~~l~~l~  201 (255)
T d2hyda1         152 GVKLSGGQKQRLSIARIFLNNPPILI-----LDEATSALDLESESIIQEALDVLS  201 (255)
T ss_dssp             GTTSCHHHHHHHHHHHHHHHCCSEEE-----EESTTTTCCHHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHHhcCCCEEE-----EeCccccCCHHHHHHHHHHHHHHh
Confidence            45678999999999999999999999     999999999999999999887653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.88  E-value=4.1e-10  Score=93.35  Aligned_cols=84  Identities=17%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccccc----ccCcEE
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDGYY----IQGQCA  300 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~----~~~~~~  300 (385)
                      -.|+++|.+|||||||+|+++.+++...      ++.......+...+..+.+|||||++.+......++    ..++++
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~~~~~------tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~   77 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDSVRPT------VVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGL   77 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSSCCCB------CCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCe------EEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcccc
Confidence            3799999999999999999987765432      222222333455556689999999998777666543    466888


Q ss_pred             EEEEeCCC-hhhhhh
Q psy125          301 IIMFDVTS-RITYKN  314 (385)
Q Consensus       301 ilv~d~~~-~~s~~~  314 (385)
                      ++++|+++ ..++++
T Consensus        78 i~~vd~~~~~~~~~~   92 (209)
T d1nrjb_          78 IFMVDSTVDPKKLTT   92 (209)
T ss_dssp             EEEEETTSCTTCCHH
T ss_pred             ceEEEEecccccHHH
Confidence            88888764 555443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=5.7e-09  Score=91.71  Aligned_cols=83  Identities=10%  Similarity=-0.070  Sum_probs=48.6

Q ss_pred             hhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhhH----HHHHHHH-------hcCCeEE
Q psy125           78 YYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKA----KSIVFHR-------KKNLQYY  146 (385)
Q Consensus        78 ~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~~----~~~~~~~-------~~~~~~~  146 (385)
                      +...+|.+++|.+.......+....-+-++       +-++|+||+|+.......    +......       ....+++
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~-------aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~  236 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKGLMEV-------ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL  236 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHHHHHH-------CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred             hhhccceEEEEecCCCchhhhhhchhhhcc-------ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeE
Confidence            446688888888765554443332222222       236888999987543211    1111111       1224799


Q ss_pred             EEcCCCCCChHHHHHHHHHHH
Q psy125          147 DISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       147 ~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                      .+||.++.|+++++..|.+..
T Consensus       237 ~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         237 TCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             ECBGGGTBSHHHHHHHHHHHH
T ss_pred             EEEeeCCCCHHHHHHHHHHHH
Confidence            999999999999999997754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=2.6e-09  Score=86.59  Aligned_cols=28  Identities=11%  Similarity=0.209  Sum_probs=22.4

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFE  250 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~  250 (385)
                      ...+|+++|.+|||||||+|++......
T Consensus        15 ~~~~I~lvG~~NvGKSSL~n~L~~~~~~   42 (188)
T d1puia_          15 TGIEVAFAGRSNAGKSSALNTLTNQKSL   42 (188)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC---
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCce
Confidence            4689999999999999999997765443

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.79  E-value=4.3e-09  Score=87.48  Aligned_cols=91  Identities=18%  Similarity=0.198  Sum_probs=59.7

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhc--Cccccc-----------------------------cccceeeEEEEEEEEeCCe
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLT--GEFEKK-----------------------------YVATLGVEVHPLVFHTNRG  271 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~  271 (385)
                      ..++++++|..++|||||+.+++.  +.....                             ....-|.+...........
T Consensus         8 ~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~   87 (222)
T d1zunb3           8 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA   87 (222)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEecc
Confidence            468999999999999999999862  111000                             0000111111222222334


Q ss_pred             eEEEEEeeCCCccccCcccccccccCcEEEEEEeCCChhhhh
Q psy125          272 AIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYK  313 (385)
Q Consensus       272 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~  313 (385)
                      ...+.|+||||...|......-...+|++|||.|+.+...-+
T Consensus        88 ~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Q  129 (222)
T d1zunb3          88 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ  129 (222)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH
T ss_pred             ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccc
Confidence            567899999999999776666788999999999998754433

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.78  E-value=4.1e-09  Score=86.59  Aligned_cols=92  Identities=14%  Similarity=0.106  Sum_probs=66.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC--------cccc--ccc-----cceeeEEEEEEEEeCCeeEEEEEeeCCCccccC
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG--------EFEK--KYV-----ATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFG  287 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~--------~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~  287 (385)
                      +.++|+++|..++|||||+++++..        ++..  ..+     ...|.|.....+.+...+.++.|+||||...|.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            4589999999999999999998621        1110  000     011444444444555566678999999999988


Q ss_pred             cccccccccCcEEEEEEeCCChhhhhh
Q psy125          288 GLRDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       288 ~~~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      ...-.-...+|++|||+|+++....+.
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt  108 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQT  108 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHH
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHH
Confidence            776677889999999999999877765

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=8.9e-09  Score=88.47  Aligned_cols=45  Identities=18%  Similarity=0.121  Sum_probs=40.0

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCCcccccCCCCCCCCCCCChhhhhhhHHh
Q psy125          150 AKSNYNFEKPFLWLARKLIGDPNLEFVAMPALLPPEVTMDPQWQSRIEQD  199 (385)
Q Consensus       150 a~~~~gi~~l~~~i~~~l~~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~  199 (385)
                      ..+.+|+++++..|++++..+|++++     +|||++++|+..+..+.+.
T Consensus       156 ~~~LSgGqkQRv~lARaL~~~p~ill-----LDEPts~LD~~~~~~i~~~  200 (281)
T d1r0wa_         156 GVTLSGGQRARISLARAVYKDADLYL-----LDSPFGYLDVFTEEQVFES  200 (281)
T ss_dssp             CTTSCHHHHHHHHHHHHHHSCCSEEE-----EESCCCSSCHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHhCccchh-----hcCccccCCHHHHHHHHHH
Confidence            44578999999999999999999999     9999999999887777653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.75  E-value=5.3e-09  Score=92.51  Aligned_cols=82  Identities=18%  Similarity=0.060  Sum_probs=44.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEe------------------------CCeeEEEEEEeC
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT------------------------NRGAIRFNVWDT   65 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~------------------------~~~~~~~~i~Dt   65 (385)
                      ++|+|||.||||||||+|++.+.+  ..+.+.+++|.++..+..                        ......+.++|+
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~--~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~   78 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCC--CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence            589999999999999999955432  334445544444322211                        123467999999


Q ss_pred             CCcccccc-------chhhhhccCcEEEEEEeCCC
Q psy125           66 AGQEKFGG-------LRDGYYIQGQCAIIMFDVTS   93 (385)
Q Consensus        66 ~g~~~~~~-------~~~~~~~~~d~illV~d~~~   93 (385)
                      ||.-....       .....++.+|++++|+|+.+
T Consensus        79 pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             C---------------CCCSSTTCSEEEEEEETTC
T ss_pred             CCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            99643211       12233478999999999864

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.72  E-value=1.5e-08  Score=86.40  Aligned_cols=86  Identities=17%  Similarity=0.241  Sum_probs=57.9

Q ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcccc---------c
Q psy125          222 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRD---------G  292 (385)
Q Consensus       222 ~~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~---------~  292 (385)
                      ...++|+++|.+||||||++|.+++.... ..++..++|...........+..+.++||||.........         .
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~~~-~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCCce-eecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            35689999999999999999998865433 2234445555544443333456789999999754322211         1


Q ss_pred             ccccCcEEEEEEeCCC
Q psy125          293 YYIQGQCAIIMFDVTS  308 (385)
Q Consensus       293 ~~~~~~~~ilv~d~~~  308 (385)
                      ...+.|+++||.+++.
T Consensus       109 ~~~~~~~il~v~~~~~  124 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDA  124 (257)
T ss_dssp             TTCEECEEEEEEESSC
T ss_pred             hcCCCCeEEEEEECCC
Confidence            2347789999988765

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.71  E-value=5.9e-09  Score=88.95  Aligned_cols=89  Identities=20%  Similarity=0.171  Sum_probs=61.9

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC--cccc---cc-----------ccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTG--EFEK---KY-----------VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL  289 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~--~~~~---~~-----------~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~  289 (385)
                      +|+++|..++|||||+.+++..  ....   .-           ...-|.+.......+..++.+++|+||||...|..-
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~e   87 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTIE   87 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCSTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHHH
Confidence            6999999999999999998721  1000   00           000011112222333445677899999999999998


Q ss_pred             cccccccCcEEEEEEeCCChhhhhh
Q psy125          290 RDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       290 ~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      ....++.+|++|+|+|..+...-+.
T Consensus        88 ~~~~l~~~D~avlVvda~~Gv~~~T  112 (276)
T d2bv3a2          88 VERSMRVLDGAIVVFDSSQGVEPQS  112 (276)
T ss_dssp             HHHHHHHCCEEEEEEETTTSSCHHH
T ss_pred             HHHHHHhhhheEEeccccCCcchhH
Confidence            8889999999999999998765544

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.69  E-value=8.5e-09  Score=89.98  Aligned_cols=85  Identities=18%  Similarity=0.092  Sum_probs=57.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC-----------------CeeEEEEEEeCCCccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-----------------RGAIRFNVWDTAGQEK   70 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~-----------------~~~~~~~i~Dt~g~~~   70 (385)
                      ..+||+|||.||||||||+|++.+ ...+.....+++|.++....+.                 .....+.++|.||...
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~-~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITK-SVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHH-STTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHC-CCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            347999999999999999999554 3333345566666655443221                 1235688999998643


Q ss_pred             ccc----c---hhhhhccCcEEEEEEeCCC
Q psy125           71 FGG----L---RDGYYIQGQCAIIMFDVTS   93 (385)
Q Consensus        71 ~~~----~---~~~~~~~~d~illV~d~~~   93 (385)
                      ...    +   .-..++++|+++.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            222    1   2334589999999999866

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.68  E-value=5.1e-08  Score=85.42  Aligned_cols=98  Identities=8%  Similarity=0.067  Sum_probs=54.8

Q ss_pred             EEEEeCCCccccccchhhhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhhh-HHHH-HH
Q psy125           60 FNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK-AKSI-VF  137 (385)
Q Consensus        60 ~~i~Dt~g~~~~~~~~~~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~~-~~~~-~~  137 (385)
                      +.++.|.|.-.   ........+|.+++|.........+....   .+.    ...=++|+||+|+...... .... .+
T Consensus       146 ~iiiETVG~gq---~e~~~~~~~D~~v~v~~p~~GD~iQ~~k~---gil----E~aDi~vvNKaD~~~~~~~~~~~~~~~  215 (323)
T d2qm8a1         146 VILVETVGVGQ---SETAVADLTDFFLVLMLPGAGDELQGIKK---GIF----ELADMIAVNKADDGDGERRASAAASEY  215 (323)
T ss_dssp             EEEEEECSSSS---CHHHHHTTSSEEEEEECSCC------CCT---THH----HHCSEEEEECCSTTCCHHHHHHHHHHH
T ss_pred             eEEEeehhhhh---hhhhhhcccceEEEEeeccchhhhhhhhh---hHh----hhhheeeEeccccccchHHHHHHHHHH
Confidence            45555555321   11223355888888888776543322111   111    1223789999997653331 1111 11


Q ss_pred             HHh----------cCCeEEEEcCCCCCChHHHHHHHHHHH
Q psy125          138 HRK----------KNLQYYDISAKSNYNFEKPFLWLARKL  167 (385)
Q Consensus       138 ~~~----------~~~~~~~~Sa~~~~gi~~l~~~i~~~l  167 (385)
                      ...          ...+++.+|+.++.|++++...|.+..
T Consensus       216 ~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         216 RAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             HHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            111          345799999999999999999997764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.61  E-value=1.4e-08  Score=86.45  Aligned_cols=89  Identities=21%  Similarity=0.218  Sum_probs=61.1

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC--cccc--cc--cc----------ceeeEEEEEEEEeCCeeEEEEEeeCCCccccCcc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTG--EFEK--KY--VA----------TLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGL  289 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~--~~~~--~~--~~----------~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~  289 (385)
                      +|+++|..++|||||+.+++..  ....  ..  ..          .-|.+.......+...+.+++++||||...|..-
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            6899999999999999998621  1100  00  00          0111222222233334567899999999999888


Q ss_pred             cccccccCcEEEEEEeCCChhhhhh
Q psy125          290 RDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       290 ~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      ...-++.+|++|+|+|..+...-+.
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t  108 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGT  108 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHH
T ss_pred             hhhhhcccCceEEEeeccCCccchh
Confidence            8888999999999999998665554

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.58  E-value=1.4e-08  Score=84.75  Aligned_cols=87  Identities=21%  Similarity=0.273  Sum_probs=59.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC--cccc---------------------------ccccceeeEEEEEEEEeCCeeE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTG--EFEK---------------------------KYVATLGVEVHPLVFHTNRGAI  273 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~  273 (385)
                      +.++|+++|.-+.|||||+.+++..  ....                           ......|.+............+
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            3589999999999999999987521  0000                           0011122333333334445567


Q ss_pred             EEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125          274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       274 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~  309 (385)
                      .+.|+||||...|......-.+-+|++|+|+|+.+.
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G  117 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKG  117 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTT
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccC
Confidence            799999999999988888888999999999999985

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.57  E-value=3e-08  Score=83.61  Aligned_cols=87  Identities=17%  Similarity=0.155  Sum_probs=47.9

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhc--Ccccc---------------------------ccccceeeEEEEEEEEeCCeeE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYVATLGVEVHPLVFHTNRGAI  273 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~  273 (385)
                      ..++|+++|..++|||||+.+++.  +....                           ......|.+.............
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~  102 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  102 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence            467899999999999999999852  11100                           0000111111111122233446


Q ss_pred             EEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125          274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       274 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~  309 (385)
                      .+.++||||...|....-.-...+|++|+|.|+.+.
T Consensus       103 ~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G  138 (245)
T d1r5ba3         103 RFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG  138 (245)
T ss_dssp             EEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred             eeeeecccccccchhhhhhhhhhhcceeeEEEcCCC
Confidence            789999999999988877778899999999999875

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=4.2e-07  Score=79.18  Aligned_cols=120  Identities=11%  Similarity=0.172  Sum_probs=69.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCc-ccccceeeeEEEEEEeC--------------------------------
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKK-YVATLGVEVHPLVFHTN--------------------------------   54 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~-~~~~~g~t~~~~~~~~~--------------------------------   54 (385)
                      ..++|+++|..++|||||+|+|++....+. ..++.............                                
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            456999999999999999999988664222 22222111111111000                                


Q ss_pred             -----------------CeeEEEEEEeCCCccccc-------------cchhhhhccCcE-EEEEEeCCChhhhhcHHHH
Q psy125           55 -----------------RGAIRFNVWDTAGQEKFG-------------GLRDGYYIQGQC-AIIMFDVTSRITYKNVPNW  103 (385)
Q Consensus        55 -----------------~~~~~~~i~Dt~g~~~~~-------------~~~~~~~~~~d~-illV~d~~~~~~~~~~~~~  103 (385)
                                       .....+.++|+||.....             .+...|+..++. +++|.++...........+
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~  184 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI  184 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHH
Confidence                             001237899999964211             123445666665 4566777665554444445


Q ss_pred             HHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125          104 HRDLVRVCENIPIVLCGNKVDIKDRK  129 (385)
Q Consensus       104 ~~~l~~~~~~~~~ilv~nK~Dl~~~~  129 (385)
                      ...+..  ...++++|+||+|.....
T Consensus       185 ~~~~~~--~~~r~i~Vltk~D~~~~~  208 (299)
T d2akab1         185 AKEVDP--QGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             HHHHCT--TCSSEEEEEECGGGSCTT
T ss_pred             HHHhCc--CCCceeeEEeccccccch
Confidence            444422  346799999999986643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.55  E-value=3.5e-08  Score=84.83  Aligned_cols=59  Identities=17%  Similarity=0.259  Sum_probs=37.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeCCeeEEEEEEeCCCcc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIRFNVWDTAGQE   69 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~   69 (385)
                      ...++|+++|.||||||||+|+|.+ .....+.+.+|+|++........   .+.++||||.-
T Consensus       110 ~~~~~v~vvG~PNvGKSsliN~L~~-~~~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi~  168 (273)
T d1puja_         110 PRAIRALIIGIPNVGKSTLINRLAK-KNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL  168 (273)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHT-SCCC------------CCEEETT---TEEEEECCCCC
T ss_pred             CCceEEEEEecCccchhhhhhhhhc-cceEEECCcccccccceEEECCC---CeEEecCCCcc
Confidence            4679999999999999999999555 55667889999999877665433   37899999974

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.53  E-value=2.4e-08  Score=86.23  Aligned_cols=83  Identities=16%  Similarity=0.082  Sum_probs=50.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccccceeeeEEEEEEeC---------------Ce--eEEEEEEeCCCcccc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN---------------RG--AIRFNVWDTAGQEKF   71 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~~~~~~~~~~g~t~~~~~~~~~---------------~~--~~~~~i~Dt~g~~~~   71 (385)
                      .+||+|||.||||||||+|++.....  .....+.+|.++..+.+.               .+  ...+.++|+||.-..
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~--~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g   79 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCC--ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence            47999999999999999999665432  222333333333322211               11  135789999997432


Q ss_pred             cc----c---hhhhhccCcEEEEEEeCCC
Q psy125           72 GG----L---RDGYYIQGQCAIIMFDVTS   93 (385)
Q Consensus        72 ~~----~---~~~~~~~~d~illV~d~~~   93 (385)
                      ..    +   .-..++++|+++.|+|+..
T Consensus        80 a~~g~Glg~~FL~~ir~~d~LihVVr~f~  108 (278)
T d1jala1          80 ASKGEGLGNKFLANIRETDAIGHVVRCFE  108 (278)
T ss_dssp             HHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccCCCccHHHHHHHHhccceEEEeeccC
Confidence            22    2   2334688999999998754

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.44  E-value=5.2e-07  Score=78.81  Aligned_cols=69  Identities=13%  Similarity=0.187  Sum_probs=42.0

Q ss_pred             EEEEEeCCCcccc-------------ccchhhhhccCcEEEEE-EeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCC
Q psy125           59 RFNVWDTAGQEKF-------------GGLRDGYYIQGQCAIIM-FDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVD  124 (385)
Q Consensus        59 ~~~i~Dt~g~~~~-------------~~~~~~~~~~~d~illV-~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~D  124 (385)
                      .+.++||||....             ..+...|+.+++.++++ .+............+...+..  ...++++|+||+|
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~--~~~r~i~Vitk~D  209 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLD  209 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc--CCCeEEEEEeccc
Confidence            3679999996421             12445677888876655 455544333333344444322  3468999999999


Q ss_pred             Ccchh
Q psy125          125 IKDRK  129 (385)
Q Consensus       125 l~~~~  129 (385)
                      .....
T Consensus       210 ~~~~~  214 (306)
T d1jwyb_         210 LMDKG  214 (306)
T ss_dssp             SSCSS
T ss_pred             cccch
Confidence            86543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=5.5e-08  Score=81.56  Aligned_cols=87  Identities=20%  Similarity=0.268  Sum_probs=61.2

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhc--Ccccc---------------------------ccccceeeEEEEEEEEeCCeeE
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYVATLGVEVHPLVFHTNRGAI  273 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~  273 (385)
                      ..++|+++|...+|||||+.+++.  +....                           ......|.|.......+....+
T Consensus         5 ~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~   84 (239)
T d1f60a3           5 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   84 (239)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred             CccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCE
Confidence            458999999999999999999862  11100                           0001122333333333344567


Q ss_pred             EEEEeeCCCccccCcccccccccCcEEEEEEeCCCh
Q psy125          274 RFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       274 ~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~  309 (385)
                      ++.|+||||...|......-...+|++|||.|+++.
T Consensus        85 ~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G  120 (239)
T d1f60a3          85 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVG  120 (239)
T ss_dssp             EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHH
T ss_pred             EEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCC
Confidence            899999999999987777778899999999999875

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=7.6e-07  Score=80.50  Aligned_cols=83  Identities=16%  Similarity=0.227  Sum_probs=50.1

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccccc---cccceeeEEEEEEEEeCCeeEEEEEeeCCCccccCccccc-----ccc
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFEKK---YVATLGVEVHPLVFHTNRGAIRFNVWDTAGQEKFGGLRDG-----YYI  295 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~-----~~~  295 (385)
                      .++|+++|.+|||||||+|.+++......   .....++|.....+... ....+.+|||||......-...     .+.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~~~  134 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMKFY  134 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTTGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhhhh
Confidence            48999999999999999999875332211   11223344444444332 2224679999998654433232     245


Q ss_pred             cCcEEEEEEeCC
Q psy125          296 QGQCAIIMFDVT  307 (385)
Q Consensus       296 ~~~~~ilv~d~~  307 (385)
                      .+|.+|++.|..
T Consensus       135 ~~d~~l~~~~~~  146 (400)
T d1tq4a_         135 EYDFFIIISATR  146 (400)
T ss_dssp             GCSEEEEEESSC
T ss_pred             cceEEEEecCCC
Confidence            778777776643

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.10  E-value=1.1e-06  Score=71.81  Aligned_cols=59  Identities=19%  Similarity=0.238  Sum_probs=37.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC--cccccce----eeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEK--KYVATLG----VEVHPLVFHTNRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~--~~~~~~g----~t~~~~~~~~~~~~~~~~i~Dt~g~~~~   71 (385)
                      -..+++|.+|||||||+|+|+.+....  .++...+    +|+....+....++   .++||||...+
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg---~iiDTPG~r~~  160 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGG---YVVDTPGFANL  160 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSC---EEESSCSSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCc---EEEeCCccccc
Confidence            367999999999999999977643221  1222222    56666666665553   47899998543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=2.8e-06  Score=74.42  Aligned_cols=89  Identities=13%  Similarity=0.261  Sum_probs=61.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhcC--cccc------ccccc------eeeEEEEEEEE----------------eCCeeEEE
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTG--EFEK------KYVAT------LGVEVHPLVFH----------------TNRGAIRF  275 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~--~~~~------~~~~~------~~~~~~~~~~~----------------~~~~~~~l  275 (385)
                      +|+++|..+.|||||+.+++..  ....      .+..+      -|.+.....+.                .+++.+.+
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i   98 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI   98 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence            5999999999999999998721  1000      00000      01111111111                13356779


Q ss_pred             EEeeCCCccccCcccccccccCcEEEEEEeCCChhhhhh
Q psy125          276 NVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRITYKN  314 (385)
Q Consensus       276 ~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~  314 (385)
                      +|+||||...|.......++-+|++|+|+|+.+.-..+.
T Consensus        99 nliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT  137 (341)
T d1n0ua2          99 NLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQT  137 (341)
T ss_dssp             EEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHH
T ss_pred             EEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhH
Confidence            999999999999888888999999999999999766665

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.99  E-value=1.7e-06  Score=68.79  Aligned_cols=22  Identities=41%  Similarity=0.750  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +||+|+|++|+|||||++.+++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999999776

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.96  E-value=5.6e-06  Score=72.51  Aligned_cols=83  Identities=22%  Similarity=0.214  Sum_probs=45.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCccccccc--------cceeeEEEEEEEEe----------------CCeeEEEEEeeC
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEFEKKYV--------ATLGVEVHPLVFHT----------------NRGAIRFNVWDT  280 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~----------------~~~~~~l~i~Dt  280 (385)
                      +||.++|.||||||||.|.+....  ....        |-+|+.........                ......+.++|+
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~--~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~   78 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCC--CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence            479999999999999999976432  2222        22333221111100                112356899999


Q ss_pred             CCccccC----ccccc---ccccCcEEEEEEeCCCh
Q psy125          281 AGQEKFG----GLRDG---YYIQGQCAIIMFDVTSR  309 (385)
Q Consensus       281 ~G~~~~~----~~~~~---~~~~~~~~ilv~d~~~~  309 (385)
                      ||.-...    .+...   .++.+|+++.|.|+.+.
T Consensus        79 pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~~  114 (319)
T d1wxqa1          79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (319)
T ss_dssp             C---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhcccchHHHHHHhhccceEEEEEeccccc
Confidence            9964321    12222   35799999999998753

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.92  E-value=1.6e-06  Score=71.12  Aligned_cols=58  Identities=24%  Similarity=0.297  Sum_probs=33.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC--cccccc--e--eeeEEEEEEeCCeeEEEEEEeCCCcccc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGEFEK--KYVATL--G--VEVHPLVFHTNRGAIRFNVWDTAGQEKF   71 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~~~~--~~~~~~--g--~t~~~~~~~~~~~~~~~~i~Dt~g~~~~   71 (385)
                      -..+++|++|||||||+|+|+.+....  .++...  |  +|+....+..++ +   .++||||...+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~g-g---~iiDTPG~r~~  161 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSG-G---LVADTPGFSSL  161 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETT-E---EEESSCSCSSC
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecCC-C---EEEECCccccc
Confidence            367899999999999999977653222  122221  2  444444555553 3   37899998654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.76  E-value=1.8e-06  Score=72.39  Aligned_cols=22  Identities=23%  Similarity=0.104  Sum_probs=19.2

Q ss_pred             hheeccccCCCchHHHHHHHHH
Q psy125          315 YYDISAKSNYNFEKPFLWLARK  336 (385)
Q Consensus       315 ~~e~Sak~~~~v~~~f~~l~~~  336 (385)
                      ++.+||++|+|+++++..|.+.
T Consensus       219 ~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         219 VLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             CEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5679999999999999888764

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.63  E-value=2.1e-05  Score=67.85  Aligned_cols=85  Identities=18%  Similarity=0.131  Sum_probs=52.8

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCccccccccceeeEEEEE--EEEeCC---------------eeEEEEEeeCCCccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPL--VFHTNR---------------GAIRFNVWDTAGQEK  285 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~~l~i~Dt~G~~~  285 (385)
                      ..+|+.++|.||||||||.+.+...... .....+++|....  .+.+..               ....+.++|.||.-.
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~~-~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVLG-NPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTTT-STTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCCC-CcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            4589999999999999999997743221 1112222222110  122221               124678999998654


Q ss_pred             c----Cccccc---ccccCcEEEEEEeCCC
Q psy125          286 F----GGLRDG---YYIQGQCAIIMFDVTS  308 (385)
Q Consensus       286 ~----~~~~~~---~~~~~~~~ilv~d~~~  308 (385)
                      -    ..+...   .++.||++|.|.|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            3    222333   3689999999999876

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.42  E-value=0.00071  Score=54.43  Aligned_cols=85  Identities=13%  Similarity=0.063  Sum_probs=48.8

Q ss_pred             EEEEEEeCCCccccccc------hhhh--hccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchh
Q psy125           58 IRFNVWDTAGQEKFGGL------RDGY--YIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK  129 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~------~~~~--~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~  129 (385)
                      ..+.++||+|...+...      ...+  ..+.+-+++|+++.....-  .......+ .. .+. --++++|.|.... 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~--~~~~~~~~-~~-~~~-~~lI~TKlDet~~-  168 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKA--YDLASKFN-QA-SKI-GTIIITKMDGTAK-  168 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGH--HHHHHHHH-HH-CTT-EEEEEECTTSCSC-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcch--HHHHhhhh-cc-cCc-ceEEEecccCCCc-
Confidence            46889999997543321      1111  1346778899988765322  22222222 11 122 3466999997544 


Q ss_pred             hhHHHHHHHHhcCCeEEEEc
Q psy125          130 VKAKSIVFHRKKNLQYYDIS  149 (385)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~S  149 (385)
                       .-....+....+.++..++
T Consensus       169 -~G~~l~~~~~~~lPi~~it  187 (211)
T d1j8yf2         169 -GGGALSAVAATGATIKFIG  187 (211)
T ss_dssp             -HHHHHHHHHTTTCCEEEEE
T ss_pred             -ccHHHHHHHHHCcCEEEEe
Confidence             3344566777788887777

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00011  Score=63.84  Aligned_cols=23  Identities=26%  Similarity=0.482  Sum_probs=21.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHh
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~  245 (385)
                      ..++|.|.|.||+|||||++++.
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHH
Confidence            46899999999999999999976

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=0.00033  Score=56.37  Aligned_cols=90  Identities=11%  Similarity=-0.026  Sum_probs=48.0

Q ss_pred             EEEEEEeCCCccccccc----hh---hhhc-----cCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCC
Q psy125           58 IRFNVWDTAGQEKFGGL----RD---GYYI-----QGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDI  125 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~----~~---~~~~-----~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl  125 (385)
                      ..+.++||+|.......    ..   ....     ..+-.++|+|+......  +......+..  -+ .--++++|.|.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~--~~~~~~~~~~--~~-~~~lIlTKlDe  166 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNA--VSQAKLFHEA--VG-LTGITLTKLDG  166 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHH--HHHHHHHHHH--SC-CCEEEEECCTT
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcch--HHHHhhhhhc--cC-CceEEEeecCC
Confidence            45789999995432211    11   1111     25678889998754321  1111111111  11 23467899997


Q ss_pred             cchhhhHHHHHHHHhcCCeEEEEcCCCCCCh
Q psy125          126 KDRKVKAKSIVFHRKKNLQYYDISAKSNYNF  156 (385)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  156 (385)
                      ...  .-.+.......+.++..++  .|.++
T Consensus       167 ~~~--~G~~l~~~~~~~~Pi~~i~--~Gq~v  193 (211)
T d2qy9a2         167 TAK--GGVIFSVADQFGIPIRYIG--VGERI  193 (211)
T ss_dssp             CTT--TTHHHHHHHHHCCCEEEEE--CSSSG
T ss_pred             CCC--ccHHHHHHHHHCCCEEEEe--CCCCc
Confidence            543  2334556667778887777  34444

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.26  E-value=0.00013  Score=62.12  Aligned_cols=78  Identities=21%  Similarity=0.199  Sum_probs=50.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHhcCccc------cccccceeeEEEEEEEEeCCe---------------eEEEEEeeCCC
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHLTGEFE------KKYVATLGVEVHPLVFHTNRG---------------AIRFNVWDTAG  282 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~---------------~~~l~i~Dt~G  282 (385)
                      .+||.++|.|||||||+.+.+......      ++..|.+|+      +.+...               ...+.++|.||
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gv------v~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~G   75 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGV------VPMPDPRLDALAEIVKPERILPTTMEFVDIAG   75 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSE------EECCCHHHHHHHHHHCCSEEECCEEEEEECCS
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEE------EecccHhHHHHHHhcCCCceeeeeEEEEEccc
Confidence            479999999999999999997643321      122333332      112111               12478999999


Q ss_pred             cccc----Cccccc---ccccCcEEEEEEeCC
Q psy125          283 QEKF----GGLRDG---YYIQGQCAIIMFDVT  307 (385)
Q Consensus       283 ~~~~----~~~~~~---~~~~~~~~ilv~d~~  307 (385)
                      .-.-    ..+...   .++.||++|.|.|+.
T Consensus        76 Li~ga~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          76 LVAGASKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             CCTTHHHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             cCCCcccCCCccHHHHHHHHhccceEEEeecc
Confidence            7432    223333   367999999999874

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.25  E-value=0.00035  Score=60.41  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=21.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHh
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~  245 (385)
                      ..++|.|.|.||+|||||++++.
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~   72 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALG   72 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHH
Confidence            46899999999999999999977

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.23  E-value=0.0012  Score=52.98  Aligned_cols=84  Identities=12%  Similarity=0.061  Sum_probs=46.4

Q ss_pred             EEEEEEeCCCccccccch----hhh---h-----ccCcEEEEEEeCCChhh-hhcHHHHHHHHHHhcCCCCEEEEEeCCC
Q psy125           58 IRFNVWDTAGQEKFGGLR----DGY---Y-----IQGQCAIIMFDVTSRIT-YKNVPNWHRDLVRVCENIPIVLCGNKVD  124 (385)
Q Consensus        58 ~~~~i~Dt~g~~~~~~~~----~~~---~-----~~~d~illV~d~~~~~~-~~~~~~~~~~l~~~~~~~~~ilv~nK~D  124 (385)
                      ..+.++||+|........    ..+   .     ...+-.++|+|+..... ...+...+..+     + +--++++|.|
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~-----~-~~~lI~TKlD  162 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV-----G-LTGVIVTKLD  162 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH-----C-CSEEEEECTT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc-----C-CceEEEeccC
Confidence            467899999965433211    111   1     24577889999876532 22222222211     1 2246789999


Q ss_pred             CcchhhhHHHHHHHHhcCCeEEEEc
Q psy125          125 IKDRKVKAKSIVFHRKKNLQYYDIS  149 (385)
Q Consensus       125 l~~~~~~~~~~~~~~~~~~~~~~~S  149 (385)
                      ....-  -.+..+....+.++..++
T Consensus       163 et~~~--G~~l~~~~~~~~Pi~~i~  185 (207)
T d1okkd2         163 GTAKG--GVLIPIVRTLKVPIKFVG  185 (207)
T ss_dssp             SSCCC--TTHHHHHHHHCCCEEEEE
T ss_pred             CCCCc--cHHHHHHHHHCCCEEEEe
Confidence            75432  223445666777777776

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.19  E-value=0.00069  Score=54.42  Aligned_cols=86  Identities=14%  Similarity=0.060  Sum_probs=48.1

Q ss_pred             eEEEEEEeCCCccccccch----h--hhhccCcEEEEEEeCCChhhhhcHHHHHHHHHHhcCCCCEEEEEeCCCCcchhh
Q psy125           57 AIRFNVWDTAGQEKFGGLR----D--GYYIQGQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKV  130 (385)
Q Consensus        57 ~~~~~i~Dt~g~~~~~~~~----~--~~~~~~d~illV~d~~~~~~~~~~~~~~~~l~~~~~~~~~ilv~nK~Dl~~~~~  130 (385)
                      ...+.++||+|........    .  ....+++-+++|.+......-.   .....+.+.. + .--++++|.|....  
T Consensus        92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~---~~~~~f~~~~-~-~~~~I~TKlDe~~~--  164 (207)
T d1ls1a2          92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL---SVARAFDEKV-G-VTGLVLTKLDGDAR--  164 (207)
T ss_dssp             TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH---HHHHHHHHHT-C-CCEEEEECGGGCSS--
T ss_pred             cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHH---HHHHHHHhhC-C-CCeeEEeecCcccc--
Confidence            3468899999965433311    1  1124678889999987653321   1222222211 1 12367899996443  


Q ss_pred             hHHHHHHHHhcCCeEEEEc
Q psy125          131 KAKSIVFHRKKNLQYYDIS  149 (385)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~S  149 (385)
                      .-.+..+....+.++..++
T Consensus       165 ~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         165 GGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             CHHHHHHHHHHCCCEEEEC
T ss_pred             chHHHHHHHHHCCCEEEEe
Confidence            3344556666777776665

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=8.5e-05  Score=58.67  Aligned_cols=20  Identities=30%  Similarity=0.522  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy125           12 CVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll~   31 (385)
                      |+|+||+|+||+||+++|+.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999999775

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.08  E-value=0.00012  Score=57.86  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -+|+|+|++|+|||||+++|..
T Consensus         8 K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999999554

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.06  E-value=0.00017  Score=56.37  Aligned_cols=25  Identities=24%  Similarity=0.388  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .+.++|+|.|++||||||+.+.|..
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHH
Confidence            4668999999999999999998544

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0027  Score=51.57  Aligned_cols=23  Identities=35%  Similarity=0.430  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTG   32 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~   32 (385)
                      +-++|.|.-|||||||+++++..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            45788899999999999998874

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.06  E-value=0.00016  Score=55.21  Aligned_cols=20  Identities=25%  Similarity=0.605  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy125           12 CVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll~   31 (385)
                      |+|.|++|||||||++.|+.
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            77899999999999998765

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.02  E-value=0.00014  Score=56.65  Aligned_cols=23  Identities=35%  Similarity=0.388  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .++|+|+|++||||||+.+.|..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999998643

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00019  Score=55.78  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -|+|+|.+|||||||++.++.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            589999999999999999875

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.88  E-value=0.00029  Score=56.09  Aligned_cols=25  Identities=24%  Similarity=0.408  Sum_probs=21.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .+.+||+|+|+|||||||+...|..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999998554

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.85  E-value=0.00027  Score=55.68  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +||+|+|+|||||||+.+.|..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998543

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00012  Score=58.26  Aligned_cols=21  Identities=38%  Similarity=0.681  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q psy125           12 CVLVGDGGTGKTTFVKRHLTG   32 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll~~   32 (385)
                      |+|+||+|||||||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999997653

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=96.80  E-value=0.00036  Score=55.51  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +.+||+|+|+|||||||+.+.|..
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHH
Confidence            457999999999999999998553

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.74  E-value=0.00029  Score=56.03  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +++|+|+|++||||||+++.|..
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998543

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.73  E-value=0.00037  Score=54.97  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      ++|+|+|++||||||+++.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998554

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.73  E-value=0.00011  Score=58.16  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -|+|+||+|||||||++.|..
T Consensus         4 iivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999999654

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00041  Score=54.65  Aligned_cols=23  Identities=35%  Similarity=0.462  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      ++||+|+|++||||||+.+.|..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46999999999999999998544

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.68  E-value=0.00044  Score=54.46  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998554

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00046  Score=54.27  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +||+|+|++||||||..+.|..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999988543

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.59  E-value=0.00039  Score=53.93  Aligned_cols=21  Identities=48%  Similarity=0.566  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q psy125           10 FKCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll   30 (385)
                      +||+|+|.+||||||+.+.+.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998853

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.58  E-value=0.0005  Score=53.24  Aligned_cols=20  Identities=30%  Similarity=0.491  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy125           12 CVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll~   31 (385)
                      ++|+|.+|||||||+++++.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            47999999999999999765

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.53  E-value=0.0011  Score=56.84  Aligned_cols=24  Identities=25%  Similarity=0.562  Sum_probs=21.8

Q ss_pred             EEEEECCCCCCHHHHHHHHhcCcc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLTGEF  249 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~~~~  249 (385)
                      +++++|..++||||++|.+++..+
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCCC
Confidence            799999999999999999987654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.52  E-value=0.00058  Score=52.97  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -|+|.|++||||||+++.|..
T Consensus         4 lI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999998654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.52  E-value=0.00074  Score=53.73  Aligned_cols=22  Identities=23%  Similarity=0.305  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      ..|+|+|++||||||+.++|..
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5779999999999999998654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00025  Score=57.20  Aligned_cols=22  Identities=18%  Similarity=0.434  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTG   32 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~   32 (385)
                      -|+|+||+|||||||++.|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999997653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00062  Score=52.24  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .|+|+|++||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998544

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0016  Score=54.88  Aligned_cols=62  Identities=18%  Similarity=0.155  Sum_probs=40.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----cccceeeeEEEEEEeCCeeEEEEEEeCCCccc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY-----VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK   70 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~~~~~~~-----~~~~g~t~~~~~~~~~~~~~~~~i~Dt~g~~~   70 (385)
                      |-.-|+++|+.++|||+|+|.+++..+.-..     ..|.|+-...... ..+....+.++||.|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            4457899999999999999998876532221     2334432222211 234566788899999753

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.001  Score=51.83  Aligned_cols=24  Identities=42%  Similarity=0.598  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      ...-|+++|.+||||||+++.++.
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            445788999999999999998654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.00082  Score=53.43  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +++|+|+|++||||||..+.|..
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999998554

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.00024  Score=56.62  Aligned_cols=20  Identities=40%  Similarity=0.725  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy125           12 CVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll~   31 (385)
                      |+|+||+|||||||+++|+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.40  E-value=0.00078  Score=52.78  Aligned_cols=21  Identities=33%  Similarity=0.569  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .|.|.|++|+|||||+..++.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999998764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.35  E-value=0.00084  Score=54.05  Aligned_cols=22  Identities=32%  Similarity=0.280  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .-|+++|.||+|||||+++|..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999999653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.35  E-value=0.001  Score=54.13  Aligned_cols=25  Identities=24%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      |+.++|+|-||+||||||+...|..
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            5678999999999999999998554

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.26  E-value=0.00089  Score=51.57  Aligned_cols=21  Identities=29%  Similarity=0.475  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            489999999999999998543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.00084  Score=53.22  Aligned_cols=23  Identities=30%  Similarity=0.257  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll   30 (385)
                      +...|.|+|.+||||||+.+.|.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45678899999999999999854

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.16  E-value=0.0082  Score=50.98  Aligned_cols=25  Identities=20%  Similarity=0.456  Sum_probs=22.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCcc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEF  249 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~  249 (385)
                      -+|+++|..++||||++|.+++..+
T Consensus        27 P~ivvvG~~SsGKSsliNaLlg~~~   51 (299)
T d2akab1          27 PQIAVVGGQSAGKSSVLENFVGRDF   51 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred             CeEEEEcCCCCCHHHHHHHHhCCCc
Confidence            4799999999999999999997664

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.13  E-value=0.0017  Score=50.49  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll   30 (385)
                      +.+-|.|+|.+||||||+.+.|.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34678899999999999998854

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.13  E-value=0.018  Score=45.91  Aligned_cols=25  Identities=40%  Similarity=0.545  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .++..|+++|++||||||.+-.|..
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa   33 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAK   33 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3456789999999999999877543

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0013  Score=50.90  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .-++|+|++||||||+.+.|..
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3467799999999999999554

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.09  E-value=0.0019  Score=51.14  Aligned_cols=24  Identities=21%  Similarity=0.173  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      ..+-|+|.|++|||||||.+.|..
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~   44 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQ   44 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            457799999999999999998653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.08  E-value=0.0014  Score=51.43  Aligned_cols=20  Identities=30%  Similarity=0.358  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q psy125           11 KCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll   30 (385)
                      -|+|.|++||||||+++.|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47888999999999999854

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.04  E-value=0.0014  Score=50.91  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -|+|.|++||||||+.+.+..
T Consensus         6 iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            377899999999999998544

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.99  E-value=0.0021  Score=49.77  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -|+|.|++||||||+.+.|..
T Consensus         5 iI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            466779999999999998554

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.96  E-value=0.0017  Score=50.35  Aligned_cols=19  Identities=32%  Similarity=0.415  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q psy125           12 CVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll   30 (385)
                      |+|+|++||||||+.+.+.
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7789999999999999853

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.95  E-value=0.0017  Score=51.07  Aligned_cols=20  Identities=30%  Similarity=0.479  Sum_probs=16.7

Q ss_pred             EE-EEEcCCCCcHHHHHHHHh
Q psy125           11 KC-VLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        11 ~i-~lvG~~g~GKSTLin~ll   30 (385)
                      || +|.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            55 457999999999999854

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.003  Score=50.13  Aligned_cols=24  Identities=21%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +...|+|+|++||||||+...|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345789999999999999998554

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0029  Score=50.97  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      ++-|+|.|++|||||||.+.|..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998543

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.70  E-value=0.0068  Score=45.86  Aligned_cols=25  Identities=40%  Similarity=0.570  Sum_probs=21.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcC
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLTG   32 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~~   32 (385)
                      +..-|+|-|+=|||||||++.++..
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhh
Confidence            3456889999999999999987754

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.66  E-value=0.0022  Score=53.64  Aligned_cols=21  Identities=29%  Similarity=0.450  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -|+|.|+||+|||||++.+..
T Consensus        34 ~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            388999999999999999665

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.62  E-value=0.0027  Score=50.36  Aligned_cols=22  Identities=27%  Similarity=0.367  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      ..|+|+|+|||||||+.++|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.40  E-value=0.0036  Score=51.37  Aligned_cols=22  Identities=32%  Similarity=0.342  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      ..+++.||||+||||+++.+..
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999998664

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.28  E-value=0.0042  Score=49.17  Aligned_cols=25  Identities=28%  Similarity=0.562  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .+++-|+|-|..||||||+++.|..
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4567899999999999999998543

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.19  E-value=0.0047  Score=50.58  Aligned_cols=21  Identities=33%  Similarity=0.466  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .+++.||||+||||+++.+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            588999999999999998664

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.02  E-value=0.0063  Score=47.92  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll   30 (385)
                      ++-|+|.|.+||||||+++.|-
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            5789999999999999999753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.0094  Score=49.09  Aligned_cols=23  Identities=30%  Similarity=0.244  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      ...++|.||+|+||||+++.+..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999999665

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.0015  Score=51.98  Aligned_cols=19  Identities=32%  Similarity=0.539  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q psy125           12 CVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll   30 (385)
                      .+|+|+||+||||++.+|.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999874

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.83  E-value=0.0064  Score=52.02  Aligned_cols=23  Identities=26%  Similarity=0.488  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .--|+++||||||||.|++++..
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhh
Confidence            34689999999999999999654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.82  E-value=0.0079  Score=49.52  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +...|+|.||+|+|||+|++.+..
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhh
Confidence            345699999999999999999654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.0084  Score=47.09  Aligned_cols=22  Identities=36%  Similarity=0.513  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -.++|||++|||||+++..+..
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHH
Confidence            3789999999999999987543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.80  E-value=0.0072  Score=49.17  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .++|.|++|+||||+++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.77  E-value=0.0084  Score=46.35  Aligned_cols=22  Identities=41%  Similarity=0.750  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLT  246 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~  246 (385)
                      .||+++|++|+|||||+..++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999998663

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.75  E-value=0.0067  Score=52.10  Aligned_cols=21  Identities=33%  Similarity=0.729  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .|++.|++|+|||||+|.++.
T Consensus       168 nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGG
T ss_pred             CEEEEeeccccchHHHHHHhh
Confidence            589999999999999999776

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.011  Score=50.24  Aligned_cols=25  Identities=16%  Similarity=0.189  Sum_probs=21.3

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll   30 (385)
                      ...++-|+|.|++|||||||.+.|.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            3456899999999999999998753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.0091  Score=48.02  Aligned_cols=21  Identities=29%  Similarity=0.379  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -|+|.||+||||||+...|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678889999999999998554

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.48  E-value=0.013  Score=48.63  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .-.++|.|++|+|||++++.+..
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999998665

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.46  E-value=0.0058  Score=52.06  Aligned_cols=31  Identities=19%  Similarity=0.144  Sum_probs=25.3

Q ss_pred             cCCCcccccCCCCCCCCCCCChhhhhhhHHhHHHHH
Q psy125          169 GDPNLEFVAMPALLPPEVTMDPQWQSRIEQDLKEAQ  204 (385)
Q Consensus       169 ~~~~~~~~~~~~~~ep~~~~d~~~~~~~~~~l~~~~  204 (385)
                      ..+.+++     .|||+.+++|.....+.+.+++..
T Consensus       240 ~~~~~~~-----iDEpe~~Lhp~~~~~l~~~l~~~~  270 (308)
T d1e69a_         240 KPSPFYV-----LDEVDSPLDDYNAERFKRLLKENS  270 (308)
T ss_dssp             SCCSEEE-----EESCCSSCCHHHHHHHHHHHHHHT
T ss_pred             ccCchhh-----hhhccccCCHHHHHHHHHHHHHhc
Confidence            3455666     899999999999999999888764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.011  Score=49.19  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      =.++|||++|||||+++..+..
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHH
Confidence            3789999999999999987543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.22  E-value=0.01  Score=49.35  Aligned_cols=21  Identities=24%  Similarity=0.406  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .|+|.|++|+|||||++.++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            578899999999999998664

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.22  E-value=0.03  Score=46.74  Aligned_cols=62  Identities=18%  Similarity=0.155  Sum_probs=40.1

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCcccccc-----ccceeeEEEEEEEEeCCeeEEEEEeeCCCccc
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHLTGEFEKKY-----VATLGVEVHPLVFHTNRGAIRFNVWDTAGQEK  285 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~  285 (385)
                      +..=|.++|+.++|||+|+|++++..+.-..     ..|.|.-.....+ .++....+.++||.|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            3456899999999999999998865532222     2344433322222 234556688999999754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.19  E-value=0.016  Score=46.17  Aligned_cols=23  Identities=22%  Similarity=0.245  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll   30 (385)
                      +..-|-|.|.+|+|||||.+.|.
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45678999999999999999865

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.17  E-value=0.014  Score=46.37  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll   30 (385)
                      .+-|+|.|..||||||+++.|-
T Consensus         2 ~~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           2 TYIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            3789999999999999999753

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=94.12  E-value=0.0091  Score=49.87  Aligned_cols=19  Identities=37%  Similarity=0.443  Sum_probs=16.1

Q ss_pred             EEEcCCCCcHHHHHHHHhc
Q psy125           13 VLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        13 ~lvG~~g~GKSTLin~ll~   31 (385)
                      .+.|++|+|||++++.+..
T Consensus        50 ~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          50 GSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             ECTTCCSSSHHHHHHHHHH
T ss_pred             EeECCCCCCHHHHHHHHHH
Confidence            4459999999999998664

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=94.10  E-value=0.012  Score=48.36  Aligned_cols=21  Identities=33%  Similarity=0.491  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -|++.||+|+|||+|++.+..
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            589999999999999999665

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.04  E-value=0.017  Score=46.04  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +-|+|.|..||||||+.+.|-.
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            6789999999999999997543

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.03  E-value=0.013  Score=47.60  Aligned_cols=21  Identities=29%  Similarity=0.393  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .+.|.||+|+||||+++.++.
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            478999999999999998765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.94  E-value=0.014  Score=47.10  Aligned_cols=21  Identities=33%  Similarity=0.366  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .++|.||+|+||||+++.+..
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHH
Confidence            478999999999999987654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.90  E-value=0.023  Score=47.45  Aligned_cols=25  Identities=16%  Similarity=0.174  Sum_probs=21.0

Q ss_pred             CCCceEEEEEcCCCCcHHHHHHHHh
Q psy125            6 DMPSFKCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus         6 ~~~~~~i~lvG~~g~GKSTLin~ll   30 (385)
                      ..+++-|+|-|.+|||||||...|.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3456899999999999999998754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.89  E-value=0.015  Score=46.14  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q psy125           10 FKCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll   30 (385)
                      +-|+|-|.-||||||+++.|.
T Consensus         1 mlI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999854

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=93.85  E-value=0.015  Score=48.13  Aligned_cols=21  Identities=38%  Similarity=0.501  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .++|.||+|+|||++++.+..
T Consensus        47 ~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          47 GVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeCCCCCCccHHHHHHHH
Confidence            589999999999999999665

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.01  Score=46.18  Aligned_cols=44  Identities=18%  Similarity=0.253  Sum_probs=25.6

Q ss_pred             EEEECCCCCCHHHHHHHHhcCcccccc-ccceeeEEEEEEEEeCCe
Q psy125          227 CVLVGDGGTGKTTFVKRHLTGEFEKKY-VATLGVEVHPLVFHTNRG  271 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  271 (385)
                      |+++|++|+||++++++++. +++..+ .+...+|+.......++.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~-~~~~~~~~~v~~TTR~~R~~E~~G~   50 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT-KHPDRFAYPIPHTTRPPKKDEENGK   50 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH-HCTTTEECCCCEECSCC---CCBTT
T ss_pred             EEEECCCCCCHHHHHHHHHH-hCCcCeeeccccccCCCCCccccCc
Confidence            89999999999999998663 333322 122234444444444443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.65  E-value=0.015  Score=44.92  Aligned_cols=21  Identities=19%  Similarity=0.420  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+|++.|.+|+||||+++.+.
T Consensus         8 K~I~i~G~~GsGKTTla~~La   28 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLA   28 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999854

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.62  E-value=0.011  Score=50.73  Aligned_cols=27  Identities=33%  Similarity=0.415  Sum_probs=23.5

Q ss_pred             CCCCceEEEEEcCCCCcHHHHHHHHhc
Q psy125            5 MDMPSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         5 ~~~~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      |.|..+||+|=|.-||||||+++.|..
T Consensus         1 ~~m~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           1 VKMGVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             CCEEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             CCccceEEEEECCCCCCHHHHHHHHHH
Confidence            456789999999999999999998554

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.61  E-value=0.014  Score=47.86  Aligned_cols=21  Identities=38%  Similarity=0.452  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .++|.|++|+||||++..++.
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999998665

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.54  E-value=0.018  Score=47.73  Aligned_cols=22  Identities=32%  Similarity=0.368  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -.|+|.||+|+|||+|++++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            3589999999999999999665

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.53  E-value=0.018  Score=46.48  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .+.|.|++|+||||++..++.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            478999999999999998765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=93.47  E-value=0.023  Score=43.69  Aligned_cols=24  Identities=21%  Similarity=0.408  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGE   33 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~   33 (385)
                      .-|++.|++|+|||||.-.++...
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458999999999999999877644

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=93.46  E-value=0.025  Score=43.16  Aligned_cols=23  Identities=26%  Similarity=0.448  Sum_probs=20.0

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHh
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~  245 (385)
                      ...+|++.|.+||||||+...+-
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La   26 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIA   26 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            45789999999999999998754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.42  E-value=0.012  Score=49.29  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=17.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +.+-|+|.|.+||||||+.++|..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            445799999999999999998543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=93.31  E-value=0.02  Score=43.65  Aligned_cols=21  Identities=38%  Similarity=0.434  Sum_probs=18.6

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+|++.|.+|+||||++..+.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999988854

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=93.11  E-value=0.026  Score=43.37  Aligned_cols=24  Identities=21%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLTGE   33 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~~~   33 (385)
                      .-|++.|++|+|||||...++...
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            458899999999999999877643

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.08  E-value=0.02  Score=50.84  Aligned_cols=18  Identities=22%  Similarity=0.584  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q psy125           12 CVLVGDGGTGKTTFVKRH   29 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~l   29 (385)
                      .+|+|+||+|||+++.+|
T Consensus        28 ~~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            468899999999999986

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=92.82  E-value=0.035  Score=43.32  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .++|+++|++|+||||+...+.
T Consensus         3 ~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999988754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.81  E-value=0.022  Score=47.31  Aligned_cols=22  Identities=27%  Similarity=0.327  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      --|+|.|++|+|||+|++++..
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHH
Confidence            3588999999999999999665

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.05  Score=43.10  Aligned_cols=23  Identities=22%  Similarity=0.154  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTGE   33 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~~   33 (385)
                      -+.|.|++|+|||+|+..++.+.
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            46788999999999999877643

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.033  Score=42.26  Aligned_cols=19  Identities=37%  Similarity=0.543  Sum_probs=17.8

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy125          227 CVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~  245 (385)
                      +.++|.+|+|||||+++++
T Consensus         5 i~itG~~GSGKTTL~~~L~   23 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLI   23 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHH
Confidence            7899999999999999976

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.58  E-value=0.029  Score=44.61  Aligned_cols=20  Identities=35%  Similarity=0.322  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q psy125           11 KCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll   30 (385)
                      =|++-|..||||||+++.|.
T Consensus         4 fIviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           4 YIVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37888999999999999854

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=92.58  E-value=0.025  Score=50.67  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -.|+++||+|||||-|+++|..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            3899999999999999999654

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=92.55  E-value=0.043  Score=42.83  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.3

Q ss_pred             CeeEEEEECCCCCCHHHHHHHHh
Q psy125          223 PSFKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       223 ~~~~i~~~G~~~vgks~~~~~~~  245 (385)
                      +.++|+++|.||+||||+...+.
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La   27 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRIT   27 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             cceeEEEECCCCCCHHHHHHHHH
Confidence            46899999999999999988754

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.50  E-value=0.036  Score=42.74  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=18.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+|+++|.||+||||++..+.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999987643

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.46  E-value=0.021  Score=46.45  Aligned_cols=20  Identities=35%  Similarity=0.434  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q psy125           11 KCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll   30 (385)
                      .|+|-|+-||||||+++.|.
T Consensus         4 ~I~ieG~dGsGKST~~~~L~   23 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILK   23 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTG
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            78999999999999999743

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.37  E-value=0.038  Score=41.11  Aligned_cols=19  Identities=26%  Similarity=0.627  Sum_probs=17.2

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy125          227 CVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~  245 (385)
                      |++.|.+|+||||++..+.
T Consensus         5 Iii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7789999999999999865

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.32  E-value=0.031  Score=44.52  Aligned_cols=20  Identities=30%  Similarity=0.355  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q psy125           11 KCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll   30 (385)
                      =|+|-|..||||||+++.|.
T Consensus         5 lI~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47888999999999888743

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=92.29  E-value=0.038  Score=42.14  Aligned_cols=25  Identities=20%  Similarity=0.379  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCC
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLTGE   33 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~~~   33 (385)
                      ..-|++.|++|+||||+.-.++...
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            3468999999999999998877644

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.18  E-value=0.042  Score=42.39  Aligned_cols=21  Identities=29%  Similarity=0.477  Sum_probs=18.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      ++|+++|.+|+||||+...+.
T Consensus         1 m~I~i~G~pGsGKsT~a~~La   21 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLA   21 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998854

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.07  E-value=0.029  Score=43.53  Aligned_cols=19  Identities=37%  Similarity=0.473  Sum_probs=17.1

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy125          227 CVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~  245 (385)
                      ++++|++||||+|+++.+.
T Consensus         5 ivl~GpsG~GK~tl~~~L~   23 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLR   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6889999999999998865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=92.01  E-value=0.045  Score=42.31  Aligned_cols=21  Identities=38%  Similarity=0.509  Sum_probs=18.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+|+++|.+|+||||++..+.
T Consensus         1 M~I~i~G~pGSGKsT~a~~La   21 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999987754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.82  E-value=0.05  Score=41.96  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=19.2

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~  245 (385)
                      ..+|+++|.+|+||||++..+.
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La   23 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQ   23 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999998754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.80  E-value=0.041  Score=42.80  Aligned_cols=19  Identities=42%  Similarity=0.756  Sum_probs=17.6

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy125          227 CVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~  245 (385)
                      |+++|++||||++++++++
T Consensus         4 Ivl~GpsG~GK~tl~~~L~   22 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLF   22 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8999999999999999865

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=91.79  E-value=0.062  Score=45.69  Aligned_cols=25  Identities=24%  Similarity=0.306  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .+.-.++++||+|||||.|++.|..
T Consensus        50 ~p~~~~lf~Gp~GvGKT~lak~la~   74 (315)
T d1r6bx3          50 KPVGSFLFAGPTGVGKTEVTVQLSK   74 (315)
T ss_dssp             SCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCcchhHHHHHHHHh
Confidence            3444688999999999999998543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=91.79  E-value=0.04  Score=47.87  Aligned_cols=22  Identities=27%  Similarity=0.255  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -.+++.||||+|||+|++.+..
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998665

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.61  E-value=0.047  Score=42.01  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=18.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      +||+++|.+|+||||.+..+.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999987754

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=91.55  E-value=0.024  Score=48.77  Aligned_cols=20  Identities=40%  Similarity=0.599  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q psy125           11 KCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll   30 (385)
                      .|+|+|++|+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            58999999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=91.42  E-value=0.05  Score=47.24  Aligned_cols=24  Identities=25%  Similarity=0.458  Sum_probs=20.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q psy125            7 MPSFKCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus         7 ~~~~~i~lvG~~g~GKSTLin~ll   30 (385)
                      .+.-.+.++||+|||||-|.++|.
T Consensus        66 ~p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          66 LSKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcceeeeCCCCccHHHHHHHHH
Confidence            445579999999999999999854

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.38  E-value=0.044  Score=44.39  Aligned_cols=22  Identities=23%  Similarity=0.225  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTG   32 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~   32 (385)
                      -+.|.|++|+|||+|+..++..
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4678899999999999987654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=91.37  E-value=0.053  Score=41.06  Aligned_cols=19  Identities=37%  Similarity=0.611  Sum_probs=17.2

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy125          227 CVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~  245 (385)
                      |++.|.+|+||||++..+.
T Consensus         5 I~i~G~~GsGKTTva~~L~   23 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLA   23 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8899999999999998855

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.36  E-value=0.046  Score=44.51  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTG   32 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~   32 (385)
                      -+.|.|++|+|||+|...++.+
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            4678899999999999987753

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.36  E-value=0.037  Score=48.45  Aligned_cols=19  Identities=42%  Similarity=0.669  Sum_probs=16.3

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q psy125           11 KCVLVGDGGTGKTTFVKRH   29 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~l   29 (385)
                      .++|||++|||||+++..|
T Consensus        45 n~llvG~~GvGKtaiv~~l   63 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGL   63 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHH
Confidence            4689999999999998653

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.053  Score=40.62  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=17.4

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      .|+++|.+||||||+...+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La   23 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLA   23 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            58999999999999988753

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=91.08  E-value=0.053  Score=47.83  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +.--|++.|++|+||||++..++.
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHH
T ss_pred             hhceEEEEcCCCCCccHHHHHHhh
Confidence            345689999999999999999776

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.01  E-value=0.077  Score=44.14  Aligned_cols=23  Identities=35%  Similarity=0.582  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      ..-|+|.|..|+|||||+..++.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999998664

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.81  E-value=0.067  Score=40.90  Aligned_cols=20  Identities=35%  Similarity=0.599  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      .|+|.|++|+|||+++..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            38999999999999999876

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.78  E-value=0.063  Score=42.76  Aligned_cols=20  Identities=30%  Similarity=0.428  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy125           12 CVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll~   31 (385)
                      +.|.|++|+|||.|++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999998654

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=90.71  E-value=0.055  Score=42.05  Aligned_cols=21  Identities=24%  Similarity=0.297  Sum_probs=18.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+|++.|++|+||||++..+.
T Consensus         4 m~I~i~GppGsGKsT~a~~La   24 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIK   24 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999998744

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.69  E-value=0.07  Score=40.86  Aligned_cols=21  Identities=48%  Similarity=0.691  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .=|+++|.+|+||||++.++.
T Consensus        15 ~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            458999999999999999875

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.67  E-value=0.06  Score=40.81  Aligned_cols=19  Identities=53%  Similarity=0.712  Sum_probs=16.6

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q psy125          226 KCVLVGDGGTGKTTFVKRH  244 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~  244 (385)
                      +|+++|.+||||||+...+
T Consensus         3 ~IvliG~~G~GKSTig~~L   21 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRL   21 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHH
Confidence            5899999999999987764

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.63  E-value=0.074  Score=40.26  Aligned_cols=19  Identities=32%  Similarity=0.506  Sum_probs=17.0

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy125          227 CVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~  245 (385)
                      +.|+|.+|+|||||+.+++
T Consensus         4 i~I~G~~gSGKTTli~~l~   22 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWV   22 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            3599999999999999876

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.50  E-value=0.061  Score=43.53  Aligned_cols=21  Identities=33%  Similarity=0.445  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .|+|=|.-||||||+++.|..
T Consensus         4 ~IviEG~~GsGKST~~~~L~~   24 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            688899999999999998543

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=90.24  E-value=0.07  Score=43.16  Aligned_cols=21  Identities=38%  Similarity=0.548  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -+.|.|++|+|||+|+..++.
T Consensus        28 l~li~G~pGsGKT~l~~qia~   48 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVE   48 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            567889999999999998776

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.14  E-value=0.07  Score=45.43  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll   30 (385)
                      -++|+|=|.-|+||||+++.|.
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La   25 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLV   25 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHT
T ss_pred             ceEEEEECCcCCCHHHHHHHHH
Confidence            3689999999999999999854

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.11  E-value=0.08  Score=41.65  Aligned_cols=20  Identities=35%  Similarity=0.348  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      =|+++|.||+||||+.+++.
T Consensus         4 li~l~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           4 LIVMVGLPARGKTYISKKLT   23 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48899999999999999855

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=90.02  E-value=0.086  Score=44.98  Aligned_cols=23  Identities=26%  Similarity=0.199  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .+||+|=|.-|+||||+++.|..
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHS
T ss_pred             eEEEEEECCccCCHHHHHHHHHH
Confidence            47999999999999999998544

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.99  E-value=0.072  Score=42.42  Aligned_cols=20  Identities=30%  Similarity=0.209  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q psy125           11 KCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll   30 (385)
                      =|++-|.-||||||+++.|.
T Consensus         5 ~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48899999999999999854

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.86  E-value=0.088  Score=41.64  Aligned_cols=21  Identities=10%  Similarity=0.129  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            388999999999999997654

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=89.83  E-value=0.091  Score=41.51  Aligned_cols=20  Identities=20%  Similarity=0.531  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHhc
Q psy125          227 CVLVGDGGTGKTTFVKRHLT  246 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~~  246 (385)
                      ++++|++||||++++++++.
T Consensus         5 ivi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999763

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=89.82  E-value=0.082  Score=42.77  Aligned_cols=21  Identities=24%  Similarity=0.202  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998544

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=89.76  E-value=0.18  Score=41.17  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=17.7

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+++.|+||+|||+++..+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la   53 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIF   53 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            38899999999999998754

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.76  E-value=0.094  Score=40.80  Aligned_cols=19  Identities=42%  Similarity=0.763  Sum_probs=17.4

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy125          227 CVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~  245 (385)
                      |+++|++||||++++.+++
T Consensus         3 Ivl~GPsGsGK~tl~~~L~   21 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLF   21 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999998865

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.51  E-value=0.069  Score=41.69  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      .=.+++.||+++|||.|++.|+.
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            34789999999999999998765

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.38  E-value=0.096  Score=42.41  Aligned_cols=20  Identities=25%  Similarity=0.449  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy125           12 CVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll~   31 (385)
                      ++|.|++|+||||+++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            67889999999999998643

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.12  Score=40.17  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=18.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      ..|+++|++|+||||....+.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La   22 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIV   22 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999987754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.33  E-value=0.1  Score=42.36  Aligned_cols=21  Identities=24%  Similarity=0.165  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -+.|.|++|+|||+|...++.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            567889999999999998875

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.33  E-value=0.31  Score=38.82  Aligned_cols=48  Identities=27%  Similarity=0.207  Sum_probs=30.9

Q ss_pred             CCCCCCChhhhhhhHHhHHHHHHhcCCCCchhhhhhcCCCCeeEEEEECCCCCCHHHHHHHHh
Q psy125          183 PPEVTMDPQWQSRIEQDLKEAQETALPDDDEDLMAAEMDMPSFKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       183 ep~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .|...-|......+.+.++......               ..-.+++.|++|+|||+++..+.
T Consensus        19 ~P~~~~diig~~~~~~~l~~~i~~~---------------~~~~lll~Gp~G~GKTtla~~ia   66 (231)
T d1iqpa2          19 RPQRLDDIVGQEHIVKRLKHYVKTG---------------SMPHLLFAGPPGVGKTTAALALA   66 (231)
T ss_dssp             CCCSTTTCCSCHHHHHHHHHHHHHT---------------CCCEEEEESCTTSSHHHHHHHHH
T ss_pred             CCCCHHHccCcHHHHHHHHHHHHcC---------------CCCeEEEECCCCCcHHHHHHHHH
Confidence            4444445444455555566555432               11248999999999999998765

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=89.29  E-value=0.098  Score=39.43  Aligned_cols=19  Identities=32%  Similarity=0.544  Sum_probs=16.6

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q psy125          226 KCVLVGDGGTGKTTFVKRH  244 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~  244 (385)
                      +|+++|.+|+||||+...+
T Consensus         2 ~I~liG~~GsGKsTi~k~L   20 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARAL   20 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHH
Confidence            4899999999999988764

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=89.16  E-value=0.094  Score=44.39  Aligned_cols=20  Identities=30%  Similarity=0.532  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy125           12 CVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll~   31 (385)
                      +++.|+||+|||.|++.+..
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            44579999999999999655

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=89.13  E-value=0.093  Score=42.34  Aligned_cols=22  Identities=23%  Similarity=0.309  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q psy125           11 KCVLVGDGGTGKTTFVKRHLTG   32 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~~   32 (385)
                      -+.|.|++|+|||+|+..++.+
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4678899999999999987753

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=89.06  E-value=0.11  Score=39.76  Aligned_cols=18  Identities=33%  Similarity=0.377  Sum_probs=16.2

Q ss_pred             EEEECCCCCCHHHHHHHH
Q psy125          227 CVLVGDGGTGKTTFVKRH  244 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~  244 (385)
                      |++.|.+|+||||++..+
T Consensus         4 I~i~G~~GsGKsT~~~~L   21 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLA   21 (190)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            788899999999999874

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=89.05  E-value=0.14  Score=39.73  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=18.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      ..|+++|++|+||||++.++.
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La   27 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999988754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=88.96  E-value=0.12  Score=41.85  Aligned_cols=21  Identities=33%  Similarity=0.382  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+++++|++|+|||||+..+.
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~   50 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQ   50 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998855

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=88.38  E-value=0.12  Score=42.71  Aligned_cols=21  Identities=29%  Similarity=0.550  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -++|.|++|+|||+|+..+..
T Consensus        37 l~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            367889999999999887654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.20  E-value=0.14  Score=40.19  Aligned_cols=20  Identities=35%  Similarity=0.429  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      .++++|++|+||||+++.+.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~   48 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTIS   48 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHh
Confidence            47899999999999999965

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=88.15  E-value=0.14  Score=38.81  Aligned_cols=19  Identities=32%  Similarity=0.426  Sum_probs=16.6

Q ss_pred             EEEEECCCCCCHHHHHHHH
Q psy125          226 KCVLVGDGGTGKTTFVKRH  244 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~  244 (385)
                      .|+++|.+|+||||+...+
T Consensus         4 ~Iil~G~~GsGKSTia~~L   22 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGREL   22 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHH
Confidence            3789999999999998875

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=88.14  E-value=0.15  Score=41.32  Aligned_cols=21  Identities=24%  Similarity=0.257  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+++++|++|+||||+++.+.
T Consensus        29 e~vaivG~sGsGKSTLl~ll~   49 (242)
T d1mv5a_          29 SIIAFAGPSGGGKSTIFSLLE   49 (242)
T ss_dssp             EEEEEECCTTSSHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998855

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=88.13  E-value=0.14  Score=38.64  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=17.1

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+++.|.+|+||||+...+.
T Consensus         8 iivl~G~~GsGKsT~a~~La   27 (171)
T d1knqa_           8 IYVLMGVSGSGKSAVASEVA   27 (171)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            36779999999999998854

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=88.07  E-value=0.12  Score=41.26  Aligned_cols=21  Identities=38%  Similarity=0.583  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -+.|.|++|+|||+|+..++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            567889999999999876554

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.91  E-value=0.16  Score=39.43  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=18.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+++++|++|||||+++..+.
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA   64 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLA   64 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHH
Confidence            479999999999999998755

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=87.89  E-value=0.14  Score=42.48  Aligned_cols=22  Identities=18%  Similarity=0.270  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      =|++|+|++|+|||+|+..+..
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHH
Confidence            3899999999999999988665

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=87.65  E-value=0.15  Score=38.41  Aligned_cols=19  Identities=26%  Similarity=0.413  Sum_probs=15.9

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy125          227 CVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~  245 (385)
                      |++.|.+|+||||+...+.
T Consensus         6 I~l~G~~GsGKsTva~~L~   24 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQ   24 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5566999999999998854

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.62  E-value=0.16  Score=41.32  Aligned_cols=21  Identities=33%  Similarity=0.378  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      -.++++|++|+||||+++.+.
T Consensus        41 e~vaivG~sGsGKSTLl~li~   61 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQ   61 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHh
Confidence            479999999999999999854

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.55  E-value=0.15  Score=41.57  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=18.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+++++|++|+||||+++.++
T Consensus        42 e~iaivG~sGsGKSTLl~ll~   62 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLIT   62 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHT
T ss_pred             CEEEEECCCCChHHHHHHHHh
Confidence            479999999999999998855

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=87.50  E-value=0.16  Score=38.51  Aligned_cols=21  Identities=24%  Similarity=0.389  Sum_probs=17.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHH
Q psy125          224 SFKCVLVGDGGTGKTTFVKRH  244 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~  244 (385)
                      .+-|.+.|.+|+||||+...+
T Consensus         6 g~~I~l~G~~GsGKTTia~~L   26 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARAL   26 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            356889999999999988764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.43  E-value=0.17  Score=40.61  Aligned_cols=20  Identities=35%  Similarity=0.552  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+.++|++|+||||+++.+.
T Consensus        28 i~~liGpsGsGKSTLl~~i~   47 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIA   47 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHh
Confidence            58999999999999999854

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=87.42  E-value=0.14  Score=38.62  Aligned_cols=19  Identities=32%  Similarity=0.513  Sum_probs=16.4

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy125          227 CVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~  245 (385)
                      |++.|.+|+||||+...+.
T Consensus         7 I~l~G~~GsGKSTia~~La   25 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALA   25 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6788999999999987753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.36  E-value=0.17  Score=40.75  Aligned_cols=21  Identities=38%  Similarity=0.718  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLT  246 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~  246 (385)
                      -++++|++|+||||+++.+.+
T Consensus        26 ~~~liGpnGaGKSTll~~i~G   46 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAG   46 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCChHHHHHHHHHc
Confidence            467999999999999998653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.35  E-value=0.16  Score=39.47  Aligned_cols=20  Identities=25%  Similarity=0.428  Sum_probs=17.6

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      -|+++|++|+||||+...+.
T Consensus        10 iI~i~GppGSGKsT~a~~La   29 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLV   29 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999998854

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.97  E-value=0.18  Score=40.44  Aligned_cols=20  Identities=25%  Similarity=0.393  Sum_probs=17.5

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+.++|++|+||||+++.+.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~   52 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIG   52 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCcchhhHhcc
Confidence            58999999999999988744

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.74  E-value=0.18  Score=41.86  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=18.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      -.++++|++|+||||+++.++
T Consensus        63 e~vaivG~nGsGKSTLl~~i~   83 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLIL   83 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHh
Confidence            369999999999999999865

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=86.73  E-value=0.21  Score=42.20  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=18.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll   30 (385)
                      +.--++++|++|+|||.|++.+.
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHH
T ss_pred             CceEEEEECCCcchHHHHHHHHH
Confidence            33357888999999999999754

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=86.52  E-value=0.2  Score=41.09  Aligned_cols=21  Identities=33%  Similarity=0.496  Sum_probs=18.7

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+++++|++|||||+++..+.
T Consensus        40 ~n~lLVG~~GvGKTalv~~la   60 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLA   60 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHH
Confidence            479999999999999998765

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=86.49  E-value=0.2  Score=40.30  Aligned_cols=20  Identities=40%  Similarity=0.481  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+.++|++|+||||+++.+.
T Consensus        34 ~~~liGpsGaGKSTLl~~i~   53 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIA   53 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHH
Confidence            58999999999999999855

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=86.48  E-value=0.16  Score=44.96  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q psy125           10 FKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        10 ~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -.++|+|.+|+|||++++.++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            3589999999999999987664

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.40  E-value=0.18  Score=39.16  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=17.5

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      -|+++|+||+||||++..+.
T Consensus        10 iI~l~G~pGSGKsT~a~~La   29 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIV   29 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999998854

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=86.18  E-value=0.18  Score=41.49  Aligned_cols=21  Identities=29%  Similarity=0.430  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -++|.|++|+|||+|+-.+..
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            356899999999999977543

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.13  E-value=0.2  Score=40.35  Aligned_cols=19  Identities=21%  Similarity=0.515  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q psy125           12 CVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll   30 (385)
                      ++|.|+|.+||||+++++.
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            5788999999999999753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=86.02  E-value=0.39  Score=38.41  Aligned_cols=20  Identities=35%  Similarity=0.446  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+++.|++|+|||+++..+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la   56 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIA   56 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            58999999999999998765

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.65  E-value=0.37  Score=38.13  Aligned_cols=20  Identities=35%  Similarity=0.390  Sum_probs=17.3

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+++.|++|+|||+++..+.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la   57 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLA   57 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHH
Confidence            48999999999999987654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=85.40  E-value=0.15  Score=42.68  Aligned_cols=15  Identities=33%  Similarity=0.919  Sum_probs=12.9

Q ss_pred             EEEEcCCCCcHHHHH
Q psy125           12 CVLVGDGGTGKTTFV   26 (385)
Q Consensus        12 i~lvG~~g~GKSTLi   26 (385)
                      ++|+|++|+||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            678899999999764

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=85.39  E-value=0.22  Score=39.70  Aligned_cols=19  Identities=26%  Similarity=0.585  Sum_probs=16.7

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q psy125           12 CVLVGDGGTGKTTFVKRHL   30 (385)
Q Consensus        12 i~lvG~~g~GKSTLin~ll   30 (385)
                      ++|.|+|.+||||+++++.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            6899999999999999743

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=85.21  E-value=0.22  Score=38.09  Aligned_cols=19  Identities=32%  Similarity=0.541  Sum_probs=15.8

Q ss_pred             EE-EEECCCCCCHHHHHHHH
Q psy125          226 KC-VLVGDGGTGKTTFVKRH  244 (385)
Q Consensus       226 ~i-~~~G~~~vgks~~~~~~  244 (385)
                      |+ ++.|.+||||||+++.+
T Consensus         2 kiivi~G~~GsGKTT~~~~L   21 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKV   21 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            45 56799999999999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.02  E-value=0.16  Score=41.39  Aligned_cols=21  Identities=29%  Similarity=0.385  Sum_probs=18.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+++++|++|+||||+++.+.
T Consensus        45 e~vaivG~sGsGKSTLl~ll~   65 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIP   65 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTT
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            479999999999999987743

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=85.00  E-value=0.23  Score=40.04  Aligned_cols=20  Identities=25%  Similarity=0.456  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+.++|++|+||||+++.+.
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~   52 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVN   52 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHc
Confidence            58999999999999988854

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.98  E-value=0.23  Score=38.24  Aligned_cols=22  Identities=23%  Similarity=0.212  Sum_probs=18.8

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+-|.|.|.+|+||||+++.+.
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3568899999999999999854

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=84.80  E-value=0.23  Score=40.57  Aligned_cols=20  Identities=25%  Similarity=0.418  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+++.|++|+|||+++.++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            47899999999999999876

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=84.76  E-value=0.31  Score=38.50  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=18.6

Q ss_pred             eeEEEEECCCCCCHHHHHHHHh
Q psy125          224 SFKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       224 ~~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+.|+|-|++|+||||....+.
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La   24 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIA   24 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4678888999999999988744

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=84.71  E-value=0.39  Score=38.34  Aligned_cols=20  Identities=35%  Similarity=0.464  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+++.|++|+|||+++..+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la   56 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIA   56 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            48999999999999998755

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=84.60  E-value=0.19  Score=42.34  Aligned_cols=15  Identities=27%  Similarity=0.620  Sum_probs=13.1

Q ss_pred             EEEEcCCCCcHHHHH
Q psy125           12 CVLVGDGGTGKTTFV   26 (385)
Q Consensus        12 i~lvG~~g~GKSTLi   26 (385)
                      +.|.|++|+||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            778899999999765

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=84.56  E-value=0.26  Score=40.47  Aligned_cols=24  Identities=25%  Similarity=0.213  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q psy125            8 PSFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         8 ~~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      +.--+.+.|++++|||+|++.+..
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            345788999999999999998654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=84.54  E-value=0.28  Score=39.48  Aligned_cols=20  Identities=35%  Similarity=0.486  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+.++|++|+||||+++.+.
T Consensus        31 ~~~liG~sGaGKSTll~~i~   50 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIA   50 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHh
Confidence            58999999999999998855

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=84.15  E-value=0.27  Score=42.30  Aligned_cols=19  Identities=47%  Similarity=0.594  Sum_probs=15.8

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q psy125           11 KCVLVGDGGTGKTTFVKRH   29 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~l   29 (385)
                      -++|.|++|+||||++..+
T Consensus       165 ~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             EEEEECCTTSTHHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHHH
Confidence            5678899999999988653

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=84.15  E-value=0.29  Score=39.49  Aligned_cols=20  Identities=35%  Similarity=0.491  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+.++|++|+||||+++.+.
T Consensus        34 i~~liGpnGaGKSTl~~~i~   53 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIA   53 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            48999999999999999865

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=83.98  E-value=0.2  Score=40.10  Aligned_cols=21  Identities=33%  Similarity=0.499  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLT  246 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~  246 (385)
                      -+.++|++|+||||+++.+.+
T Consensus        28 ~~~liGpsGaGKSTll~~l~G   48 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAG   48 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            489999999999999998653

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.78  E-value=0.35  Score=34.10  Aligned_cols=23  Identities=17%  Similarity=0.159  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q psy125            9 SFKCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus         9 ~~~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -+.|.+-|.+|+|||||.+.|..
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~   28 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLS   28 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHH
Confidence            47899999999999999999654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.41  E-value=0.5  Score=37.51  Aligned_cols=20  Identities=30%  Similarity=0.411  Sum_probs=17.5

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+++.|++|+|||+++..+.
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~   54 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALT   54 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHH
Confidence            38999999999999888765

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=83.11  E-value=0.24  Score=39.76  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHhc
Q psy125          226 KCVLVGDGGTGKTTFVKRHLT  246 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~~  246 (385)
                      -+.++|++|+||||+++.+.+
T Consensus        27 i~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            489999999999999988653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.85  E-value=0.17  Score=39.03  Aligned_cols=21  Identities=33%  Similarity=0.289  Sum_probs=17.8

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .-|++.|.+|+||||+...+.
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            467889999999999988753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=82.78  E-value=0.36  Score=38.81  Aligned_cols=20  Identities=35%  Similarity=0.414  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+.++|++|+||||+++.+.
T Consensus        30 i~glvG~nGaGKSTLl~~l~   49 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIIS   49 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999855

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=82.74  E-value=0.33  Score=39.71  Aligned_cols=19  Identities=32%  Similarity=0.606  Sum_probs=16.7

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q psy125           11 KCVLVGDGGTGKTTFVKRH   29 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~l   29 (385)
                      +|+|.|..||||||+.-.|
T Consensus         3 ~Iai~gKGGvGKTT~a~nL   21 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNL   21 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            7889999999999998663

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.63  E-value=0.64  Score=36.69  Aligned_cols=20  Identities=30%  Similarity=0.409  Sum_probs=17.8

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+++.|++|+|||+++..+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la   56 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALA   56 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHH
Confidence            48999999999999998865

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=82.29  E-value=0.38  Score=37.71  Aligned_cols=20  Identities=35%  Similarity=0.483  Sum_probs=16.7

Q ss_pred             eEEEEECCCCCCHHHHHHHH
Q psy125          225 FKCVLVGDGGTGKTTFVKRH  244 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~  244 (385)
                      .-++++|++||||||.+-++
T Consensus         7 ~vi~lvGptGvGKTTTiaKL   26 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKL   26 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            35788999999999987664

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.07  E-value=0.38  Score=38.98  Aligned_cols=21  Identities=33%  Similarity=0.536  Sum_probs=18.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      -.+++.|++|+|||+++..+.
T Consensus        44 ~~lll~GppGtGKT~l~~~l~   64 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLW   64 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHH
Confidence            369999999999999998765

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=81.88  E-value=0.25  Score=38.90  Aligned_cols=19  Identities=32%  Similarity=0.450  Sum_probs=16.1

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy125          227 CVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~  245 (385)
                      |+|.|++|+||+|....+.
T Consensus         6 I~I~GppGSGKgT~ak~La   24 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMA   24 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6778999999999987744

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=81.76  E-value=0.42  Score=37.58  Aligned_cols=21  Identities=38%  Similarity=0.589  Sum_probs=17.4

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .-++++|++||||||.+-++-
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            357889999999999987643

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.68  E-value=0.41  Score=38.94  Aligned_cols=20  Identities=25%  Similarity=0.569  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      -+.++|++|+||||+++.+.
T Consensus        32 i~~liG~nGaGKSTLl~~i~   51 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVIT   51 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            47999999999999999965

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.50  E-value=0.42  Score=39.19  Aligned_cols=21  Identities=33%  Similarity=0.548  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      |++|+|++|+|||+|+-.++.
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            899999999999999888664

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=81.44  E-value=0.7  Score=38.92  Aligned_cols=22  Identities=32%  Similarity=0.646  Sum_probs=19.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHhc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLT  246 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~  246 (385)
                      ..+++.|.+|+|||++++.++.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCEEEEeeccccchHHHHHHhh
Confidence            4699999999999999999763

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.44  E-value=0.43  Score=38.86  Aligned_cols=20  Identities=30%  Similarity=0.594  Sum_probs=18.0

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+.++|++|+||||+++.+.
T Consensus        30 i~~iiG~sGsGKSTLl~~i~   49 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCIN   49 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999999854

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=81.37  E-value=0.4  Score=40.22  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=18.0

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      -.++++|+||||||.+...+.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA   70 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLA   70 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHh
Confidence            358899999999999998754

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=81.27  E-value=0.44  Score=37.49  Aligned_cols=21  Identities=43%  Similarity=0.552  Sum_probs=17.3

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .-++++|++||||||.+-.+-
T Consensus        12 ~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2          12 FVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            568999999999999876543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.22  E-value=0.49  Score=37.01  Aligned_cols=21  Identities=19%  Similarity=0.378  Sum_probs=18.2

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      +-|.|.|.+|+||||+.+.+.
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            568899999999999998754

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.22  E-value=0.89  Score=37.11  Aligned_cols=21  Identities=24%  Similarity=0.305  Sum_probs=16.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy125           11 KCVLVGDGGTGKTTFVKRHLT   31 (385)
Q Consensus        11 ~i~lvG~~g~GKSTLin~ll~   31 (385)
                      -+.+.|++|+|||+|+-.++.
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            356889999999999876554

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=81.06  E-value=0.37  Score=37.91  Aligned_cols=21  Identities=38%  Similarity=0.515  Sum_probs=13.1

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      .-++++|++||||||.+-++-
T Consensus        13 ~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          13 YVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             EEEEEECSCCC----HHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            347889999999999876643

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=80.73  E-value=0.48  Score=37.14  Aligned_cols=39  Identities=15%  Similarity=0.154  Sum_probs=24.4

Q ss_pred             EEEEEeeCCCccccCccccc------ccccCcEEEEEEeCCChhh
Q psy125          273 IRFNVWDTAGQEKFGGLRDG------YYIQGQCAIIMFDVTSRIT  311 (385)
Q Consensus       273 ~~l~i~Dt~G~~~~~~~~~~------~~~~~~~~ilv~d~~~~~s  311 (385)
                      ..+.++||||...+....-.      .....+-.++|.|.+....
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~  137 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE  137 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchh
Confidence            45789999996443321111      1236678899999876544

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=80.69  E-value=0.88  Score=34.45  Aligned_cols=25  Identities=20%  Similarity=0.391  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCCHHHHHHHHhcCcc
Q psy125          225 FKCVLVGDGGTGKTTFVKRHLTGEF  249 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~~~~~  249 (385)
                      .-+++.|++|+|||++...++...+
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            4589999999999999998775543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=80.33  E-value=1.5  Score=35.34  Aligned_cols=19  Identities=37%  Similarity=0.433  Sum_probs=15.7

Q ss_pred             EEEECCCCCCHHHHHHHHh
Q psy125          227 CVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       227 i~~~G~~~vgks~~~~~~~  245 (385)
                      +++.|++|+|||+++..+.
T Consensus        49 l~l~GppGtGKT~l~~~l~   67 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTV   67 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHH
Confidence            3456999999999998865

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.22  E-value=0.48  Score=38.09  Aligned_cols=21  Identities=33%  Similarity=0.311  Sum_probs=18.5

Q ss_pred             eEEEEECCCCCCHHHHHHHHh
Q psy125          225 FKCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       225 ~~i~~~G~~~vgks~~~~~~~  245 (385)
                      -.+++.|++|+|||+++..+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la   73 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVA   73 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            368999999999999998865

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=80.14  E-value=0.25  Score=39.82  Aligned_cols=20  Identities=35%  Similarity=0.617  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHh
Q psy125          226 KCVLVGDGGTGKTTFVKRHL  245 (385)
Q Consensus       226 ~i~~~G~~~vgks~~~~~~~  245 (385)
                      .+.++|++|+||||+++.+.
T Consensus        33 ~~~iiG~sGsGKSTll~~i~   52 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIA   52 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58999999999999999855