Psyllid ID: psy12632

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-----
MFLTLFYSASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFV
cccEEEEEccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccHHHHHHHHcccccccHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcEEEcccccccccccccccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccHHHHHHHHcccccccHHHHHHccEEcccccccHHHHHHHHcHHHHHHHcccHHHHHccccccccccccccccccccccccEEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccccc
ccEEEEccccccccccccHHHHHHHHHHHHHHHHHcccHHHcHccHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccEEEEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHHccEHcccccccHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHEEEcccccccccHccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHcccHHHHHHccHHHHHHHHHccccccHHHHHHcccEccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccc
MFLTLFYSaslcspasYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYIlgrpirfhdlaffdpVMYESLRQLVVDSENKNLTSLFSAIRAgifdvvpasclenltpeDFRLLLNGVGDINVTVLISIDMcteegggsielvpggrdlevtssNVYDYVRKYAETRMFKSQVKAIEVYFWtgspalpasedgfqpmpsvtirpaddahlptantcisrlyiplyssrATLRHKLLLAIKTKNFGFAIragifdvvpasclenltpeDFRLLLNGVGDINVTVLISYTsfidesgepseRLIKFKRWLWSIVEKMTHLERMDLVYfwtgspalpasedgfqpmpsvtirpaddahlptantcisrlyiplyssrATLRHKLLLAIKTKNFGFV
MFLTLFYSASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSielvpggrdlevtsSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTsfidesgepserlIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLlaiktknfgfv
MFLTLFYSASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFV
*FLTLFYSASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSP*********************DAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSP*********************DAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNF***
MFLTLFYSASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFV
MFLTLFYSASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFV
MFLTLFYSASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKN****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFLTLFYSASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query395 2.2.26 [Sep-21-2011]
P515922885 E3 ubiquitin-protein liga yes N/A 0.544 0.074 0.488 2e-67
Q626712788 E3 ubiquitin-protein liga yes N/A 0.546 0.077 0.461 1e-63
O950712799 E3 ubiquitin-protein liga yes N/A 0.551 0.077 0.468 2e-63
Q80TP32792 E3 ubiquitin-protein liga yes N/A 0.551 0.078 0.468 2e-63
Q8CHG5823 Protein KIAA0317 OS=Mus m no N/A 0.346 0.166 0.340 4e-12
D3ZBM7909 E3 ubiquitin-protein liga no N/A 0.478 0.207 0.302 4e-12
Q8IYU2909 E3 ubiquitin-protein liga no N/A 0.478 0.207 0.298 1e-11
Q8GY233681 E3 ubiquitin-protein liga yes N/A 0.670 0.071 0.216 1e-11
Q3U0D9909 E3 ubiquitin-protein liga no N/A 0.478 0.207 0.298 1e-11
O15033823 Protein KIAA0317 OS=Homo no N/A 0.346 0.166 0.333 2e-11
>sp|P51592|HYD_DROME E3 ubiquitin-protein ligase hyd OS=Drosophila melanogaster GN=hyd PE=1 SV=3 Back     alignment and function desciption
 Score =  256 bits (655), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 145/297 (48%), Positives = 174/297 (58%), Gaps = 82/297 (27%)

Query: 15   ASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESL- 73
            AS+ERINAFRN GR++GLCLLQNEL PLFL RHV+KYILGR I+FHDLAFFDP +YES  
Sbjct: 2607 ASFERINAFRNIGRLIGLCLLQNELLPLFLQRHVLKYILGRKIKFHDLAFFDPALYESFR 2666

Query: 74   -----------------------------------------RQLVVDSEN---------- 82
                                                     R + V S N          
Sbjct: 2667 QIIQNAQTKEGEETINRMELCFVIDLMKEEGCGNRELIPGGRDVAVTSSNIFEYVRRYTE 2726

Query: 83   ----KNLTSLFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEG 138
                K+      A++ G+FDV+P + + NLT ED RLLLNGVGDINV+ LIS     +E 
Sbjct: 2727 YRLIKSQEKALEALKDGVFDVLPDNSMINLTAEDLRLLLNGVGDINVSTLISYTTFNDE- 2785

Query: 139  GGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIE-------VYFWTGSPALPA 191
                            SS   D + K+   + F S V+ +        VYFWTGSPALPA
Sbjct: 2786 ----------------SSEGPDKLLKFK--KWFWSIVEKMNIMERQDLVYFWTGSPALPA 2827

Query: 192  SEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGF 248
            SE+GFQP+PSVTIRPADD+HLPTANTCISRLYIPLYSS++ LR K+L+AIK+KNFGF
Sbjct: 2828 SEEGFQPLPSVTIRPADDSHLPTANTCISRLYIPLYSSKSILRSKMLMAIKSKNFGF 2884
E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates (By similarity). Required for regulation of cell proliferation in imaginal disks and germ cells. Acts as a negative regulator of hh, ci and dpp expression in the anterior of the eye disk.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q62671|UBR5_RAT E3 ubiquitin-protein ligase UBR5 OS=Rattus norvegicus GN=Ubr5 PE=1 SV=3 Back     alignment and function description
>sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2 Back     alignment and function description
>sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus musculus GN=Ubr5 PE=1 SV=2 Back     alignment and function description
>sp|Q8CHG5|K0317_MOUSE Protein KIAA0317 OS=Mus musculus GN=Kiaa0317 PE=2 SV=2 Back     alignment and function description
>sp|D3ZBM7|HACE1_RAT E3 ubiquitin-protein ligase HACE1 OS=Rattus norvegicus GN=Hace1 PE=2 SV=1 Back     alignment and function description
>sp|Q8IYU2|HACE1_HUMAN E3 ubiquitin-protein ligase HACE1 OS=Homo sapiens GN=HACE1 PE=1 SV=2 Back     alignment and function description
>sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1 OS=Arabidopsis thaliana GN=UPL1 PE=1 SV=3 Back     alignment and function description
>sp|Q3U0D9|HACE1_MOUSE E3 ubiquitin-protein ligase HACE1 OS=Mus musculus GN=Hace1 PE=1 SV=1 Back     alignment and function description
>sp|O15033|K0317_HUMAN Protein KIAA0317 OS=Homo sapiens GN=KIAA0317 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
383847215 2799 PREDICTED: E3 ubiquitin-protein ligase h 0.562 0.079 0.558 4e-77
307203970 2836 E3 ubiquitin-protein ligase UBR5 [Harpeg 0.559 0.077 0.560 3e-76
345498130 2928 PREDICTED: E3 ubiquitin-protein ligase h 0.559 0.075 0.551 2e-75
345498132 2922 PREDICTED: E3 ubiquitin-protein ligase h 0.559 0.075 0.551 3e-75
307188163 2716 E3 ubiquitin-protein ligase hyd [Campono 0.559 0.081 0.556 4e-75
340721355 2826 PREDICTED: e3 ubiquitin-protein ligase h 0.559 0.078 0.555 4e-74
350406689 2826 PREDICTED: E3 ubiquitin-protein ligase h 0.559 0.078 0.555 5e-74
189237186 2858 PREDICTED: similar to ubiquitin-protein 0.559 0.077 0.536 1e-72
270007492 2916 hypothetical protein TcasGA2_TC014081 [T 0.559 0.075 0.536 1e-72
328712997 2955 PREDICTED: e3 ubiquitin-protein ligase h 0.584 0.078 0.528 1e-72
>gi|383847215|ref|XP_003699250.1| PREDICTED: E3 ubiquitin-protein ligase hyd-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 162/290 (55%), Positives = 186/290 (64%), Gaps = 68/290 (23%)

Query: 15   ASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLR 74
            ASYER+NAFRN GR++GLCLLQNELCP+FLNRHVIKYILGR IRFHDLAFFD V+YESLR
Sbjct: 2521 ASYERLNAFRNVGRLIGLCLLQNELCPIFLNRHVIKYILGRSIRFHDLAFFDSVIYESLR 2580

Query: 75   QLVVDSENKNLTSLFS-------------------------------------------- 90
            QLV DSE K+  SLFS                                            
Sbjct: 2581 QLVNDSETKDSNSLFSTLDLNFSIDLCPEEGGGSIELMPNGRDIEVTASNVYDYVRKYAE 2640

Query: 91   ---------AIRA---GIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEG 138
                     A+RA   G+FDV+P   L+ LT ED RLLLNGVGDINV+VLIS     +E 
Sbjct: 2641 VRMIKVQEKALRAMREGVFDVLPEGSLDGLTSEDLRLLLNGVGDINVSVLISYTSFNDES 2700

Query: 139  GGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFKSQVKAIEVYFWTGSPALPASEDGFQP 198
            G S + +   +        ++  V K     M  S+ + + +YFWTGSPALPASEDGFQP
Sbjct: 2701 GESADRLAKFKRW------LWSIVEK-----MTHSERQDL-LYFWTGSPALPASEDGFQP 2748

Query: 199  MPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGF 248
            MP+VT+RPADDAHLPTANTCISRLY+PLYSSR  LRHKLLLAIKTKNFGF
Sbjct: 2749 MPTVTLRPADDAHLPTANTCISRLYVPLYSSRHVLRHKLLLAIKTKNFGF 2798

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307203970|gb|EFN82877.1| E3 ubiquitin-protein ligase UBR5 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|345498130|ref|XP_003428158.1| PREDICTED: E3 ubiquitin-protein ligase hyd-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345498132|ref|XP_001605335.2| PREDICTED: E3 ubiquitin-protein ligase hyd-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307188163|gb|EFN72995.1| E3 ubiquitin-protein ligase hyd [Camponotus floridanus] Back     alignment and taxonomy information
>gi|340721355|ref|XP_003399087.1| PREDICTED: e3 ubiquitin-protein ligase hyd-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350406689|ref|XP_003487850.1| PREDICTED: E3 ubiquitin-protein ligase hyd-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|189237186|ref|XP_967079.2| PREDICTED: similar to ubiquitin-protein ligase [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270007492|gb|EFA03940.1| hypothetical protein TcasGA2_TC014081 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328712997|ref|XP_001947833.2| PREDICTED: e3 ubiquitin-protein ligase hyd [Acyrthosiphon pisum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query395
UNIPROTKB|E7ET84527 UBR5 "E3 ubiquitin-protein lig 0.415 0.311 0.662 2.4e-98
UNIPROTKB|I3LGM11000 LOC100738301 "Uncharacterized 0.415 0.164 0.662 5.4e-96
FB|FBgn00024312885 hyd "hyperplastic discs" [Dros 0.372 0.050 0.741 7.6e-96
UNIPROTKB|K7GPI81585 LOC100738301 "Uncharacterized 0.415 0.103 0.662 2.9e-94
UNIPROTKB|J9P5M92307 UBR5 "Uncharacterized protein" 0.415 0.071 0.662 2e-93
UNIPROTKB|E7EMW72792 UBR5 "E3 ubiquitin-protein lig 0.415 0.058 0.662 4.6e-93
MGI|MGI:19180402792 Ubr5 "ubiquitin protein ligase 0.415 0.058 0.662 4.6e-93
UNIPROTKB|F1N0L22798 UBR5 "Uncharacterized protein" 0.415 0.058 0.662 4.7e-93
UNIPROTKB|F1PBF92798 UBR5 "Uncharacterized protein" 0.415 0.058 0.662 4.7e-93
UNIPROTKB|J3KMW72798 UBR5 "E3 ubiquitin-protein lig 0.415 0.058 0.662 4.7e-93
UNIPROTKB|E7ET84 UBR5 "E3 ubiquitin-protein ligase UBR5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 585 (211.0 bits), Expect = 2.4e-98, Sum P(3) = 2.4e-98
 Identities = 110/166 (66%), Positives = 135/166 (81%)

Query:   230 RATLRHKLLLAIKTKNFGFAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISY 289
             R    H++L+  +      A+R G+ DV+P + LE+LT EDFRLL+NG G++NV +LIS+
Sbjct:   364 RKYAEHRMLVVAEQPLH--AMRKGLLDVLPKNSLEDLTAEDFRLLVNGCGEVNVQMLISF 421

Query:   290 TSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVT 349
             TSF DESGE +E+L++FKRW WSIVEKM+  ER DLVYFWT SP+LPASE+GFQPMPS+T
Sbjct:   422 TSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEGFQPMPSIT 481

Query:   350 IRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFV 395
             IRP DD HLPTANTCISRLY+PLYSS+  L+ KLLLAIKTKNFGFV
Sbjct:   482 IRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV 527
GO:0003723 "RNA binding" evidence=IEA
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
UNIPROTKB|I3LGM1 LOC100738301 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0002431 hyd "hyperplastic discs" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|K7GPI8 LOC100738301 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9P5M9 UBR5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E7EMW7 UBR5 "E3 ubiquitin-protein ligase UBR5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1918040 Ubr5 "ubiquitin protein ligase E3 component n-recognin 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N0L2 UBR5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PBF9 UBR5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J3KMW7 UBR5 "E3 ubiquitin-protein ligase UBR5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 5e-60
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 2e-47
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 4e-46
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 2e-38
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 3e-38
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 2e-36
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 2e-19
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 3e-16
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information 
 Score =  197 bits (502), Expect = 5e-60
 Identities = 88/299 (29%), Positives = 125/299 (41%), Gaps = 75/299 (25%)

Query: 4   TLFYSASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLA 63
            L Y       A+ E ++ FR  GR+LG  L  N L  LF  R   K +LG+P+  HDL 
Sbjct: 49  YLLYPNPRSGFANEEHLSYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLE 108

Query: 64  FFDPVMYESLRQLVVDSENKNLTSL----------------------------------- 88
             DP +Y+SL+ L+++++      L                                   
Sbjct: 109 SLDPELYKSLKWLLLNNDTSEELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEY 168

Query: 89  ----------------FSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISID 132
                             A R G  +V+P + L+   PE+  LL+ G  +I+V  L S  
Sbjct: 169 VHLVIEYRLNKGIEKQLEAFREGFSEVIPENLLKLFDPEELELLICGSPEIDVDDLKS-- 226

Query: 133 MCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAET-RMFKSQVKAIEVYFWTGSPALPA 191
             TE  GG         + +         ++ + E    F ++ +   + F TGS  LP 
Sbjct: 227 -NTEYKGGY------SANSQT--------IKWFWEVVESFTNEERRKLLQFVTGSSRLPV 271

Query: 192 SEDGFQPM-PSVTIRPA--DDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIK-TKNF 246
              GF  + P  TIR A  DD  LPTA+TC +RL +P YSS+  LR KLLLAI   K F
Sbjct: 272 --GGFAALSPKFTIRKAGSDDERLPTAHTCFNRLKLPPYSSKEILREKLLLAINEGKGF 328

E3 ubiquitin-protein ligases. Can bind to E2 enzymes. Length = 328
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 395
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 100.0
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 100.0
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 100.0
KOG0942|consensus1001 100.0
KOG0941|consensus850 100.0
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 100.0
KOG0939|consensus720 100.0
KOG0170|consensus621 100.0
KOG4427|consensus1096 100.0
KOG0943|consensus3015 100.0
KOG0940|consensus358 99.98
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 99.98
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 99.97
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 99.97
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 99.96
KOG0939|consensus720 99.96
KOG0942|consensus1001 99.95
KOG0941|consensus850 99.95
KOG0170|consensus621 99.93
KOG4427|consensus1096 99.91
KOG0943|consensus3015 99.82
KOG0940|consensus358 99.58
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information 
Probab=100.00  E-value=1.2e-60  Score=473.63  Aligned_cols=268  Identities=41%  Similarity=0.667  Sum_probs=239.9

Q ss_pred             CCCHHHHHHHHHHhHHHHHHHhcCcccCCCCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHhhccccHHHHHHHHH
Q psy12632         14 PASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSLFSAIR   93 (395)
Q Consensus        14 ~~~~~~l~~f~~~G~lig~al~~~~~~~~~f~~~~~k~llg~~~~~~DL~~~D~~~~~sl~~l~~~~~~k~i~~~~~af~   93 (395)
                      ..+++++++|+++|++||+|++++.+++++|+++|||.++|.+++++||+++||+++++++++...++..          
T Consensus        64 ~~~~~~l~~f~~~G~lig~al~~~~~~~l~f~~~f~k~L~~~~~tl~Dl~~~D~~~~~sl~~l~~~~~~~----------  133 (336)
T smart00119       64 FANPEHLAYFRFIGRVLGKALYDNRLLDLFFARPFYKKLLGKPVTLHDLESLDPELYKSLKWLLLNNDTS----------  133 (336)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHcCCeeCCCCCHHHHHHHhCCCCCHHHHHHhCHHHHHHHHHHHHhCCCc----------
Confidence            4457899999999999999999999999999999999999999999999999999999999995222110          


Q ss_pred             hccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeec-cCCCceEeecCCCcccccchhhHHHHHHHHHHHhhch
Q psy12632         94 AGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCT-EEGGGSIELVPGGRDLEVTSSNVYDYVRKYAETRMFK  172 (395)
Q Consensus        94 ~Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~-~~~~~~~eL~~~g~~~~vt~~n~~e~i~~~~~~~l~~  172 (395)
                                                 +  ++++.|++.... .+.+..+||++||+++.||.+|+.+|++.++.+++..
T Consensus       134 ---------------------------~--~~~l~F~~~~~~~~g~~~~~eL~~~G~~~~Vt~~N~~eYv~~~~~~~l~~  184 (336)
T smart00119      134 ---------------------------E--ELDLTFSIVLTSEFGQVKVVELKPGGSNIPVTEENKKEYVHLVIEYRLNK  184 (336)
T ss_pred             ---------------------------c--cccceEEEEeeecCCCcceEecCCCCCCCcCCHHHHHHHHHHHHHHHHhh
Confidence                                       0  022455543332 3446789999999999999999999999999999988


Q ss_pred             hHHHHHHHhhhcCCCCCCCCCCCCCCCCeeEecCCCCCCCCCCcccceeeecCCCCCHHHHHHHHHHHHHcCchhhHHhh
Q psy12632        173 SQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFAIRA  252 (395)
Q Consensus       173 ~~e~~~~L~F~TG~~rlP~~~~gf~~l~~~~i~~~~~~~LP~ahTCfn~L~LP~Yss~e~l~ekL~~AI~~~~~gfa~~~  252 (395)
                      +.+.+..                                                                     |||+
T Consensus       185 ~~~~~~~---------------------------------------------------------------------afr~  195 (336)
T smart00119      185 GIEKQLE---------------------------------------------------------------------AFRE  195 (336)
T ss_pred             hHHHHHH---------------------------------------------------------------------HHHH
Confidence            8888877                                                                     9999


Q ss_pred             hcccccCchhhcCCCHHHHHhhcCCCCCCCHHHHHhcccccCCCCCCchHHHHHHHHHHHHHHhCCHHHHHhhhhhccCC
Q psy12632        253 GIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGS  332 (395)
Q Consensus       253 Gf~~v~p~~~l~~f~~~el~~l~~G~~~i~~~~l~~~~~~~~~~~~~s~~~~~~i~~fw~v~~~~~~~~~~~~L~F~TG~  332 (395)
                      ||++|+|...+++|+|+||++++||.++||+++|++++.|.+||+.++    ++|+|||+++++||+++|++||+|+|||
T Consensus       196 Gf~~vip~~~l~~f~~~eL~~licG~~~i~~~~l~~~~~~~~g~~~~~----~~i~~Fw~vl~~~s~ee~~~fL~F~TG~  271 (336)
T smart00119      196 GFSEVIPENLLRLFTPEELELLICGSPEIDVDDLKSNTEYKGGYSENS----QTIKWFWEVVESFTNEERRKLLQFVTGS  271 (336)
T ss_pred             HHHHHcCHHHhhCCCHHHHHHHhCCCCCCCHHHHhhheEEcCCCCCCC----HHHHHHHHHHHHCCHHHHHHhheeccCC
Confidence            999999999999999999999999999999999999999999998877    4789999999999999999999999999


Q ss_pred             CCCCCCCCCCCCC-CeeEecCC--CCCCCcccccccccccCCCCCCHHHHHHHHHHHHhc-CCcccC
Q psy12632        333 PALPASEDGFQPM-PSVTIRPA--DDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKT-KNFGFV  395 (395)
Q Consensus       333 ~~~P~~~~g~~~~-~~i~~~~~--~~~~LP~a~TC~~~L~lP~Y~s~e~l~~kL~~ai~~-~~fg~~  395 (395)
                      +|+|+  +||+.+ |+++|...  ++++||+||||||+|+||+|+|+|+||+||++||++ +||||.
T Consensus       272 ~rlP~--~G~~~l~~~~~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~~kL~~AI~~~~gF~l~  336 (336)
T smart00119      272 SRLPV--GGFAALSPKFTIRKAGSDDDRLPTAHTCFNRLKLPPYSSKEILREKLLLAINEGKGFGLS  336 (336)
T ss_pred             CCCCC--CchhhcCCceEEEECCCCCCCCCccccccCcCcCCCCCCHHHHHHHHHHHHHcCCCCCCC
Confidence            99999  699988 67888643  689999999999999999999999999999999997 899985

E3 ubiquitin-protein ligases. Can bind to E2 enzymes.
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>KOG0942|consensus Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0939|consensus Back     alignment and domain information
>KOG0170|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG0939|consensus Back     alignment and domain information
>KOG0942|consensus Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>KOG0170|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
3pt3_A118 Crystal Structure Of The C-Terminal Lobe Of The Hum 2e-49
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 2e-12
3h1d_A405 Structure Of The Huwe1 Hect Domain Length = 405 1e-11
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 4e-12
3g1n_A388 Catalytic Domain Of The Human E3 Ubiquitin-Protein 2e-11
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 8e-10
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 1e-09
3tug_A398 Crystal Structure Of The Hect Domain Of Itch E3 Ubi 4e-09
3olm_A429 Structure And Function Of A Ubiquitin Binding Site 5e-09
1nd7_A374 Conformational Flexibility Underlies Ubiquitin Liga 2e-08
1c4z_A358 Structure Of E6ap: Insights Into Ubiquitination Pat 7e-08
3jvz_C385 E2~ubiquitin-Hect Length = 385 2e-06
3jw0_C385 E2~ubiquitin-Hect Length = 385 2e-06
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 4e-06
>pdb|3PT3|A Chain A, Crystal Structure Of The C-Terminal Lobe Of The Human Ubr5 Hect Domain Length = 118 Back     alignment and structure 
Iteration: 1

 Score =  192 bits (489), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 87/114 (76%), Positives = 101/114 (88%)
Query: 282 NVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDG 341
           +V +LIS+TSF DESGE +E+L++FKRW WSIVEKM+  ER DLVYFWT SP+LPASE+G
Sbjct: 5   SVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASEEG 64
Query: 342 FQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFV 395
           FQPMPS+TIRP DD HLPTANTCISRLY+PLYSS+  L+ KLLLAIKTKNFGFV
Sbjct: 65  FQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV 118
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|3H1D|A Chain A, Structure Of The Huwe1 Hect Domain Length = 405 Back     alignment and structure
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|3G1N|A Chain A, Catalytic Domain Of The Human E3 Ubiquitin-Protein Ligase Huwe1 Length = 388 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|3TUG|A Chain A, Crystal Structure Of The Hect Domain Of Itch E3 Ubiquitin Ligase Length = 398 Back     alignment and structure
>pdb|3OLM|A Chain A, Structure And Function Of A Ubiquitin Binding Site Within The Catalytic Domain Of A Hect Ubiquitin Ligase Length = 429 Back     alignment and structure
>pdb|1ND7|A Chain A, Conformational Flexibility Underlies Ubiquitin Ligation Mediated By The Wwp1 Hect Domain E3 Ligase Length = 374 Back     alignment and structure
>pdb|1C4Z|A Chain A, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 358 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query395
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 1e-46
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 3e-29
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 3e-23
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 2e-22
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 1e-22
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 7e-22
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 2e-22
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 5e-21
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 2e-22
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 1e-21
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 3e-22
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 3e-22
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 4e-22
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 1e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure
 Score =  154 bits (392), Expect = 1e-46
 Identities = 87/116 (75%), Positives = 101/116 (87%)

Query: 280 DINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYFWTGSPALPASE 339
             +V +LIS+TSF DESGE +E+L++FKRW WSIVEKM+  ER DLVYFWT SP+LPASE
Sbjct: 3   LGSVQMLISFTSFNDESGENAEKLLQFKRWFWSIVEKMSMTERQDLVYFWTSSPSLPASE 62

Query: 340 DGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGFV 395
           +GFQPMPS+TIRP DD HLPTANTCISRLY+PLYSS+  L+ KLLLAIKTKNFGFV
Sbjct: 63  EGFQPMPSITIRPPDDQHLPTANTCISRLYVPLYSSKQILKQKLLLAIKTKNFGFV 118
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Length = 118 Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 100.0
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 100.0
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 100.0
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 100.0
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 100.0
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 100.0
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 100.0
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 100.0
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 100.0
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 99.98
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 99.97
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 99.97
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 99.97
3pt3_A118 E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed 99.96
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
Probab=100.00  E-value=5.6e-64  Score=505.34  Aligned_cols=273  Identities=26%  Similarity=0.483  Sum_probs=231.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHhHHHHHHHhcCcccCCCCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHhhccccHHH
Q psy12632          8 SASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTS   87 (395)
Q Consensus         8 ~p~~~~~~~~~~l~~f~~~G~lig~al~~~~~~~~~f~~~~~k~llg~~~~~~DL~~~D~~~~~sl~~l~~~~~~k~i~~   87 (395)
                      .|++.+..+++++++|+|+|++||+||++|.++|++|+++|||+|+|.+++++||+++||+++++|.+|+.++..     
T Consensus       123 ~~np~s~~~~~~l~~f~flGrliG~Al~~~~~ld~~F~~~f~K~Llg~~~~l~DL~~~Dp~l~~sL~~ll~~~~~-----  197 (405)
T 3h1d_A          123 TINPSSHANPNHLSYFKFVGRIVAKAVYDNRLLECYFTRSFYKHILGKSVRYTDMESEDYHFYQGLVYLLENDVS-----  197 (405)
T ss_dssp             EECCC-----CHHHHHHHHHHHHHHHHHHTCCCCCEECHHHHHHHHTCCCCGGGHHHHCHHHHHHHHHHHHSCGG-----
T ss_pred             eeCCccccChhHHHHHHHHhHHHHHHHhCCCccCCCccHHHHHHhcCCCCCHHHHHHhhHHHHHHHhhhhcCChh-----
Confidence            345555667899999999999999999999999999999999999999999999999999999999999743211     


Q ss_pred             HHHHHHhccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCCCcccccchhhHHHHHHHHHH
Q psy12632         88 LFSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAE  167 (395)
Q Consensus        88 ~~~af~~Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~g~~~~vt~~n~~e~i~~~~~  167 (395)
                                                        +++++..|+++....+....+||+|||+++.||.+|+.+|++.+++
T Consensus       198 ----------------------------------~l~l~ltF~~~~~~~G~~~~veL~p~G~~i~VT~~Nk~eYV~l~~~  243 (405)
T 3h1d_A          198 ----------------------------------TLGYDLTFSTEVQEFGVAEVRDLKPNGANILVTEENKKEYVHLVCQ  243 (405)
T ss_dssp             ----------------------------------GSSSCEEEETTTCCEEECCGGGGSSCSSEEECCTTTHHHHHHHHHH
T ss_pred             ----------------------------------hhcceeEEEEEeecCCceeeEeecCCCCCCccchHhHHHHHHHHHH
Confidence                                              1122234443322222235679999999999999999999999999


Q ss_pred             HhhchhHHHHHHHhhhcCCCCCCCCCCCCCCCCeeEecCCCCCCCCCCcccceeeecCCCCCHHHHHHHHHHHHHcCchh
Q psy12632        168 TRMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFG  247 (395)
Q Consensus       168 ~~l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l~~~~i~~~~~~~LP~ahTCfn~L~LP~Yss~e~l~ekL~~AI~~~~~g  247 (395)
                      +++.++.++|..                                                                    
T Consensus       244 ~~l~~~v~~q~~--------------------------------------------------------------------  255 (405)
T 3h1d_A          244 MRMTGAIRKQLA--------------------------------------------------------------------  255 (405)
T ss_dssp             HHHTGGGHHHHH--------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHH--------------------------------------------------------------------
Confidence            999999999988                                                                    


Q ss_pred             hHHhhhcccccCchhhcCCCHHHHHhhcCCCCCCCHHHHHhcccccCCCCCCchHHHHHHHHHHHHHHhCCHHHHHhhhh
Q psy12632        248 FAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVY  327 (395)
Q Consensus       248 fa~~~Gf~~v~p~~~l~~f~~~el~~l~~G~~~i~~~~l~~~~~~~~~~~~~s~~~~~~i~~fw~v~~~~~~~~~~~~L~  327 (395)
                       ||++||++|+|..+|++|+|+||+.++||.++||+++|+++|.|. +|+.+|    ++|+|||+++++||+++|++||+
T Consensus       256 -aF~~Gf~~Vip~~~L~lF~~~ELe~Li~G~~~id~~dl~~~t~y~-gy~~~~----~~i~~FW~v~~~~s~eer~~fL~  329 (405)
T 3h1d_A          256 -AFLEGFYEIIPKRLISIFTEQELELLISGLPTIDIDDLKSNTEYH-KYQSNS----IQIQWFWRALRSFDQADRAKFLQ  329 (405)
T ss_dssp             -HHHHHHHHHSCHHHHTTSCHHHHHHHHHCCCCCCHHHHHHTEEEE-SSCTTC----HHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             -HHHHHHHHHhhHHHHhCCCHHHHHHHhCCCCCCCHHHHHhhCccc-CCCCCC----chHhhHHHHHHhCCHHHHHHHHH
Confidence             999999999999999999999999999999999999999999998 477776    47999999999999999999999


Q ss_pred             hccCCCCCCCCCCCCCCC------CeeEecC--CCCCCCcccccccccccCCCCCCHHHHHHHHHHHHhc--CCcccC
Q psy12632        328 FWTGSPALPASEDGFQPM------PSVTIRP--ADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKT--KNFGFV  395 (395)
Q Consensus       328 F~TG~~~~P~~~~g~~~~------~~i~~~~--~~~~~LP~a~TC~~~L~lP~Y~s~e~l~~kL~~ai~~--~~fg~~  395 (395)
                      |||||+|+|+  +||+.+      ++++|.+  .++++||+||||||+|+||+|+|+|+||+||++||++  +|||||
T Consensus       330 FvTGs~rlP~--~Gf~~L~~~~~~~~f~i~~~~~~~~~LP~a~TCfn~L~LP~Yss~e~l~ekL~~AI~e~~~GFgla  405 (405)
T 3h1d_A          330 FVTGTSKVPL--QGFAALEGMNGIQKFQIHRDDRSTDRLPSAHTCFNQLDLPAYESFEKLRHMLLLAIQEASEGFGLA  405 (405)
T ss_dssp             HHHSSSCCCT--TCGGGCBCSSSBCCEEEEEECSCTTSCCEEEGGGTEEEEECCSSHHHHHHHHHHHHHC--------
T ss_pred             HHcCCCCCCC--CccccccccCCCceEEEeeCCCCCCCCccceeccCEeECCCCCCHHHHHHHHHHHHHhCCCCcCCC
Confidence            9999999999  588776      3677753  4678999999999999999999999999999999995  799986
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>3pt3_A E3 ubiquitin-protein ligase UBR5; EDD, HHYD, mixed alpha-beta fold, ubiquitin ligase; 1.97A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 395
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 9e-26
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 1e-23
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 9e-26
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 1e-25
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: Ubiquitin-protein ligase E3a (E6ap)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 9e-26
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 8/142 (5%)

Query: 248 FAIRAGIFDVVPASCLENL-TPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKF 306
            A R G   V   S L+ L  PE+  LL+ G  +++   L   T +       S      
Sbjct: 212 KAFRRGFHMVTNESPLKYLFRPEEIELLICGSRNLDFQALEETTEYDGGYTRDS----VL 267

Query: 307 KRWLWSIVEKMTHLERMDLVYFWTGSPALPASEDGFQPMPSVTIR-PADDAHLPTANTCI 365
            R  W IV   T  ++   + F TG+   P    G   +  +  +   D   LPT++TC 
Sbjct: 268 IREFWEIVHSFTDEQKRLFLQFTTGTDRAPVG--GLGKLKMIIAKNGPDTERLPTSHTCF 325

Query: 366 SRLYIPLYSSRATLRHKLLLAI 387
           + L +P YSS+  L+ +LL AI
Sbjct: 326 NVLLLPEYSSKEKLKERLLKAI 347
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query395
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 100.0
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 100.0
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 99.96
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 99.96
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-57  Score=449.71  Aligned_cols=267  Identities=25%  Similarity=0.407  Sum_probs=235.4

Q ss_pred             CCCCCCCCHHHHHHHHHHhHHHHHHHhcCcccCCCCCHHHHHHHhCCCCCcccccccCHHHHHHHHHHHHhhccccHHHH
Q psy12632          9 ASLCSPASYERINAFRNTGRILGLCLLQNELCPLFLNRHVIKYILGRPIRFHDLAFFDPVMYESLRQLVVDSENKNLTSL   88 (395)
Q Consensus         9 p~~~~~~~~~~l~~f~~~G~lig~al~~~~~~~~~f~~~~~k~llg~~~~~~DL~~~D~~~~~sl~~l~~~~~~k~i~~~   88 (395)
                      |++.+..+++++++|+++|+++|+|++++.+++++|++.|||+++|.+++++||+++||++++++.++..++.       
T Consensus       100 ~~p~~~~~~~~~~~f~~lG~lig~al~~~~~~~~~f~~~f~k~Llg~~~t~~DL~~iD~~~~~sl~~l~~~~~-------  172 (374)
T d1nd7a_         100 INPASTINPDHLSYFCFIGRFIAMALFHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNI-------  172 (374)
T ss_dssp             ECGGGGGSTTHHHHHHHHHHHHHHHHHTTCCCCCCCCHHHHHHHTTCCCCHHHHHTTCHHHHHHHHHHHSSCS-------
T ss_pred             cCCccccChhHHHHHHHhHHHHHHHHHcCcccCCCccHHHHHHhcCCCCCHHHHHHhCHHHHHhHHHHHhccc-------
Confidence            4445566788999999999999999999999999999999999999999999999999999999998863321       


Q ss_pred             HHHHHhccccccCcccccCCCHHHHHhhhcCCCcccccceEEEeeeccCCCceEeecCCCcccccchhhHHHHHHHHHHH
Q psy12632         89 FSAIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISIDMCTEEGGGSIELVPGGRDLEVTSSNVYDYVRKYAET  168 (395)
Q Consensus        89 ~~af~~Gf~~vi~~~~l~~f~~~el~~L~~G~~~id~~~~f~~~~~~~~~~~~~eL~~~g~~~~vt~~n~~e~i~~~~~~  168 (395)
                                                      .+.+++..|+++....+....++|++||+++.||.+|+.+|++.++++
T Consensus       173 --------------------------------e~~~l~l~f~~~~~~~~~~~~~eL~~~G~~~~VT~~N~~~yv~~~~~~  220 (374)
T d1nd7a_         173 --------------------------------EECGLEMYFSVDMEILGKVTSHDLKLGGSNILVTEENKDEYIGLMTEW  220 (374)
T ss_dssp             --------------------------------CSSCCCCBSEECCCSSTTCCCEESSTTGGGCBCCTTTHHHHHHHHHHH
T ss_pred             --------------------------------cccccceeEEEEeecCCCcceeecCCCCCcccchHHHHHHHHHHHHHH
Confidence                                            112333556665555566778999999999999999999999999999


Q ss_pred             hhchhHHHHHHHhhhcCCCCCCCCCCCCCCCCeeEecCCCCCCCCCCcccceeeecCCCCCHHHHHHHHHHHHHcCchhh
Q psy12632        169 RMFKSQVKAIEVYFWTGSPALPASEDGFQPMPSVTIRPADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTKNFGF  248 (395)
Q Consensus       169 ~l~~~~e~~~~L~F~TG~~rlP~~~~gf~~l~~~~i~~~~~~~LP~ahTCfn~L~LP~Yss~e~l~ekL~~AI~~~~~gf  248 (395)
                      ++..+.+.+..                                                                     
T Consensus       221 ~l~~~~~~~~~---------------------------------------------------------------------  231 (374)
T d1nd7a_         221 RFSRGVQEQTK---------------------------------------------------------------------  231 (374)
T ss_dssp             HHHTTTHHHHH---------------------------------------------------------------------
T ss_pred             HHhccHHHHHH---------------------------------------------------------------------
Confidence            99888877777                                                                     


Q ss_pred             HHhhhcccccCchhhcCCCHHHHHhhcCCCCCCCHHHHHhcccccCCCCCCchHHHHHHHHHHHHHHhCCHHHHHhhhhh
Q psy12632        249 AIRAGIFDVVPASCLENLTPEDFRLLLNGVGDINVTVLISYTSFIDESGEPSERLIKFKRWLWSIVEKMTHLERMDLVYF  328 (395)
Q Consensus       249 a~~~Gf~~v~p~~~l~~f~~~el~~l~~G~~~i~~~~l~~~~~~~~~~~~~s~~~~~~i~~fw~v~~~~~~~~~~~~L~F  328 (395)
                      |||+||++|+|...+++|+|+||+.++||.+++|+++|++++.|.+ |+.+|    +.|+|||+++++||+++|++||+|
T Consensus       232 afr~Gf~~vip~~~l~~f~~~eL~~licG~~~id~~~l~~~~~y~g-y~~~s----~~i~~fw~vl~~~t~ee~~~fL~F  306 (374)
T d1nd7a_         232 AFLDGFNEVVPLQWLQYFDEKELEVMLCGMQEVDLADWQRNTVYRH-YTRNS----KQIIWFWQFVKETDNEVRMRLLQF  306 (374)
T ss_dssp             HHHHHHHHHSCGGGGTTCCHHHHHHHHHCCCCCCHHHHHHTEEEES-CCTTS----HHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHhHHHhCCHHHHhhCCHHHHHHhhCCCCCCCHHHHhhheeecc-CCCCC----HHHHHHHHHHHhcCHHHHHHhhee
Confidence            9999999999999999999999999999999999999999999985 66676    478999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCC------CeeEec-CCCCCCCcccccccccccCCCCCCHHHHHHHHHHHHhcC
Q psy12632        329 WTGSPALPASEDGFQPM------PSVTIR-PADDAHLPTANTCISRLYIPLYSSRATLRHKLLLAIKTK  390 (395)
Q Consensus       329 ~TG~~~~P~~~~g~~~~------~~i~~~-~~~~~~LP~a~TC~~~L~lP~Y~s~e~l~~kL~~ai~~~  390 (395)
                      ||||+|+|+  +||+.+      +++++. ..++++||+||||||+|+||+|+|+|+||+||++||++.
T Consensus       307 vTGs~rlP~--~G~~~l~~~~~~~~~~i~~~~~~~~LP~A~TCfn~L~LP~Yss~e~l~ekL~~AI~~~  373 (374)
T d1nd7a_         307 VTGTCRLPL--GGFAELMGSNGPQKFCIEKVGKDTWLPRSHTCFNRLDLPPYKSYEQLKEKLLFAIEET  373 (374)
T ss_dssp             HHSCSCCCT--TCGGGCEETTEECCEEEECCSCTTSCCEEEGGGTEEECCCCSSHHHHHHHHHHHHHSC
T ss_pred             ecCCCCCCC--cchhhhcccCCCCceeeccCCCCCCCCchhhhhcEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999  588766      245554 346689999999999999999999999999999999973
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure