Psyllid ID: psy12656

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-
Protein Sequence
MLSCISRVHRSTRLNSLTILRNLSKNSPLQFENAENGEKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKLKKSRVYVKPKKTG
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEEEccccccccEEEEEEEEEEccccccEEEEEEEcccEEEEEEEEcccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccHHHHHHcccccccccccccccccccccccccEEEccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEccccccEEEEEEEEEEEcccccccEEEEEEEEcccEEEEEEEcccccccEEEEEEccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEcccccHHHHHHccccccccccHHcccHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mlscisrvhrstrlNSLTILRnlsknsplqfenaengekklsipqenrfmyqeflpdpelkfRNQVREKLERsdmikrrsvidipsFFVGSIlsvtsadkhdpnktrkFVGICIqkrycglrheFVLRNVVDNLGIeiaydmydptihniTVLRLEKRLDDDLLYLrdalpqystfpfdmepeylldgapvpindikvklkprpwvgrwerkgykgiddvDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSnkklkksrvyvkpkktg
Flexible Loop (DISEMBL)
mlscisrvhrstrlnsltilrnlsknsplqfenaengekklsipQENRFMYQeflpdpelkfrNQVREklersdmikrrsvidipsffVGSILsvtsadkhdpnktrKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDgapvpindikvklkprpwvgrwerkgykgiddvdqhitekmkgqkkkleepwekydLMKEYRRTIPEEEQEEIFSEVFSELHqlslsnkklkksrvyvkpkktg
Low Complexity Region (SEG)
MLSCISRVHRSTRLNSLTILRNLSKNSPLQFENAENGEKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVlrlekrldddllylrdalPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPeeeqeeifsevfseLHQlslsnkklkksRVYVKPKKTG
Disordered region (IsUnstruct)
**************************************************Y**F*********************IKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQH********************************************************************
Disordered Region (DISOPRED)
************************************************************KFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFP*************VPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEV***************************
Disordered Region (DISEMBL)
MLSCISRVHRSTRLNSLTILRNLSKNSPLQFENAENGEKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITE********LEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKLKKSRVYVKPKKTG
Disordered Region (DISPRO)
*******************L*NL******************SIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKLKKSR**V******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSCISRVHRSTRLNSLTILRNLSKNSPLQFENAENGEKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKLKKSRVYVKPKKTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	291	2.2.26 [Sep-21-2011]
Q9VHN6	306	39S ribosomal protein L19	yes	N/A	0.869	0.826	0.577	9e-87
Q95Y83	288	Probable 39S ribosomal pr	yes	N/A	0.814	0.822	0.452	4e-55
Q5R8M4	292	39S ribosomal protein L19	yes	N/A	0.697	0.695	0.467	2e-50
Q2HJI0	292	39S ribosomal protein L19	yes	N/A	0.690	0.688	0.475	8e-50
P49406	292	39S ribosomal protein L19	yes	N/A	0.670	0.667	0.476	2e-49
Q9D338	292	39S ribosomal protein L19	yes	N/A	0.687	0.684	0.478	5e-49
P82413	233	50S ribosomal protein L19	N/A	N/A	0.319	0.399	0.290	5e-07
Q7MA03	118	50S ribosomal protein L19	yes	N/A	0.353	0.872	0.293	3e-06
A0RPR5	118	50S ribosomal protein L19	yes	N/A	0.295	0.728	0.329	3e-06
A7GZB0	118	50S ribosomal protein L19	yes	N/A	0.288	0.711	0.363	3e-06

>sp|Q9VHN6|RM19_DROME 39S ribosomal protein L19, mitochondrial OS=Drosophila melanogaster GN=mRpL19 PE=2 SV=1

 Score =  320 bits (819), Expect = 9e-87,   Method: Compositional matrix adjust.
 Identities = 146/253 (57%), Positives = 196/253 (77%)

Query: 39  KKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSA 98
           +K  IP   RF+Y EFLPDP++++RN VREKLER DM+ RR  ID+P F+VGS+L+VTS+
Sbjct: 54  RKTIIPANYRFVYPEFLPDPKVEWRNLVREKLERLDMLDRRKQIDLPEFYVGSVLAVTSS 113

Query: 99  DKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKR 158
           D H   KT +FVGICI +  CGLR  F+LRNV+D+ G+E+ Y++YDPTI  I VLRLEKR
Sbjct: 114 DPHAAGKTSRFVGICINRDRCGLRARFILRNVIDHQGMEVVYELYDPTILKIEVLRLEKR 173

Query: 159 LDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGID 218
           LDD L YLRDALP+YSTF  +ME E L +GAPVP+NDIKV L+PRPW+ RWER+  +G+ 
Sbjct: 174 LDDSLFYLRDALPEYSTFDENMEAEPLEEGAPVPVNDIKVVLRPRPWLERWERQNLRGVA 233

Query: 219 DVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKL 278
           ++D+++ +K +    K+++PWEKYD+MK+YR +IPEEEQ EIF+EV +ELH L L  K+ 
Sbjct: 234 NIDEYLKDKHRLSAAKVQKPWEKYDMMKDYRSSIPEEEQTEIFAEVHTELHALELQRKRN 293

Query: 279 KKSRVYVKPKKTG 291
           K+ R ++KPK+  
Sbjct: 294 KRKRTFIKPKQLA 306

Drosophila melanogaster (taxid: 7227)

>sp|Q95Y83|RM19_CAEEL Probable 39S ribosomal protein L19, mitochondrial OS=Caenorhabditis elegans GN=Y119C1B.4 PE=3 SV=1

 Score =  214 bits (546), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 109/241 (45%), Positives = 158/241 (65%), Gaps = 4/241 (1%)

Query: 50  MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 109
           +Y +FL  P    RN ++E+LER DM++RR  IDIP F+VGSI++VTS+DK+  +K  +F
Sbjct: 48  IYPDFLQSPVWNRRNALKEELERQDMLERRMNIDIPEFYVGSIVAVTSSDKNLGSKEHRF 107

Query: 110 VGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDA 169
           VGICI++   GL H+F LRN ++N+G+E+ YD+Y+PTI  I  L+LEKRLD+DL YL DA
Sbjct: 108 VGICIRREKEGLLHQFTLRNTIENIGVEVVYDLYNPTIKKIETLKLEKRLDNDLSYLVDA 167

Query: 170 LPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMK 229
           LP+YSTF F MEP+    G P+P+N+ KVKLK  PW  RWE    +GI+D     T   K
Sbjct: 168 LPEYSTFDFHMEPQAHPAGTPIPVNECKVKLKTPPWTRRWEVASVRGIEDTWTQATPWFK 227

Query: 230 GQ-KKKLEEPWEKYDLMKEYRRTIPEEEQ---EEIFSEVFSELHQLSLSNKKLKKSRVYV 285
            +  K +   +EKYDL+ +YR +  +E++   ++   +   E H   L+ +++ KS    
Sbjct: 228 RKLHKTIVNDYEKYDLIADYRTSSTKEQEVFVQKQMQKFEKERHAAGLTRRRILKSAAAY 287

Query: 286 K 286
           K
Sbjct: 288 K 288

Caenorhabditis elegans (taxid: 6239)

>sp|Q5R8M4|RM19_PONAB 39S ribosomal protein L19, mitochondrial OS=Pongo abelii GN=MRPL19 PE=2 SV=1

 Score =  199 bits (506), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/218 (46%), Positives = 147/218 (67%), Gaps = 15/218 (6%)

Query: 38  EKKLSIPQENRFMYQEFLP-----DPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSI 92
           +K+  +  E RF+  EF+P     DP LKF      ++ER DM++RR V+ IP F+VGSI
Sbjct: 64  DKRRPVELERRFLSPEFIPPRGRTDP-LKF------QMERKDMLERRKVLHIPEFYVGSI 116

Query: 93  LSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITV 152
           L VT+AD +   K  +F+GICIQ+   GL   F+LRNV++  G+EI +++Y+P +  I V
Sbjct: 117 LRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQV 176

Query: 153 LRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERK 212
           ++LEKRLDD LLYLRDALP+YSTF  +M+PE       VP+N++KVK+KP+PW  RWER 
Sbjct: 177 VKLEKRLDDSLLYLRDALPEYSTFDVNMKPEVQEPNQKVPVNELKVKMKPKPWSKRWERP 236

Query: 213 GY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 248
            +  KGI   D  +TE+   + +K  +PW ++D+M+EY
Sbjct: 237 NFNIKGI-RFDLCLTEEQMKEAQKWSQPWLEFDMMREY 273

Pongo abelii (taxid: 9601)

>sp|Q2HJI0|RM19_BOVIN 39S ribosomal protein L19, mitochondrial OS=Bos taurus GN=MRPL19 PE=1 SV=1

 Score =  197 bits (501), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 98/206 (47%), Positives = 143/206 (69%), Gaps = 5/206 (2%)

Query: 45  QENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPN 104
           +E+RF+  EF+P P  +  N ++ ++ER DM++RR ++ IP F+VGSIL VT+AD +   
Sbjct: 71  RESRFLSPEFIP-PRGR-TNPLKFQIERKDMLERRKILHIPEFYVGSILRVTTADPYANG 128

Query: 105 KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLL 164
           KT +F+GICIQ+   GL   F+LRN ++  G+EI +++Y+P I  I V++LEKRLDD LL
Sbjct: 129 KTSQFLGICIQRSGKGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLEKRLDDSLL 188

Query: 165 YLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQ 222
           YLRDALP+YSTF  +M+P        VPIN +KVK+KP+PW  RWER  +  KGI   D 
Sbjct: 189 YLRDALPEYSTFDMNMKPVAQEPSREVPINQLKVKMKPKPWSKRWERPKFNVKGI-RFDL 247

Query: 223 HITEKMKGQKKKLEEPWEKYDLMKEY 248
            +TE+   + +K  +PW ++D+M+EY
Sbjct: 248 CLTEEQMKEAQKWSQPWLEFDMMREY 273

Bos taurus (taxid: 9913)

>sp|P49406|RM19_HUMAN 39S ribosomal protein L19, mitochondrial OS=Homo sapiens GN=MRPL19 PE=1 SV=2

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/210 (47%), Positives = 142/210 (67%), Gaps = 15/210 (7%)

Query: 46  ENRFMYQEFLP-----DPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADK 100
           E RF+  EF+P     DP LKF      ++ER DM++RR V+ IP F+VGSIL VT+AD 
Sbjct: 72  ERRFLSPEFIPRRGRTDP-LKF------QIERKDMLERRKVLHIPEFYVGSILRVTTADP 124

Query: 101 HDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLD 160
           +   K  +F+GICIQ+   GL   F+LRNV++  G+EI +++Y+P +  I V++LEKRLD
Sbjct: 125 YASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLD 184

Query: 161 DDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGY--KGID 218
           D LLYLRDALP+YSTF  +M+P        VP+N++KVK+KP+PW  RWER  +  KGI 
Sbjct: 185 DSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERPNFNIKGI- 243

Query: 219 DVDQHITEKMKGQKKKLEEPWEKYDLMKEY 248
             D  +TE+   + +K  +PW ++D+M+EY
Sbjct: 244 RFDLCLTEQQMKEAQKWNQPWLEFDMMREY 273

Homo sapiens (taxid: 9606)

>sp|Q9D338|RM19_MOUSE 39S ribosomal protein L19, mitochondrial OS=Mus musculus GN=Mrpl19 PE=2 SV=1

 Score =  194 bits (494), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 98/205 (47%), Positives = 140/205 (68%), Gaps = 5/205 (2%)

Query: 46  ENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNK 105
           E RF+  EF+P P  +  N ++ K+ER DM+ RR V+ IP F+VGSIL VT+AD +   K
Sbjct: 72  ERRFLSPEFIP-PRGR-TNPLKFKIERKDMLDRRKVLPIPEFYVGSILRVTTADPYASGK 129

Query: 106 TRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLY 165
           T +F+GICI++   GL   F LRN ++  G+EI +++Y+P I  I V++LEKRLDD+LLY
Sbjct: 130 TSQFLGICIKRSGNGLGATFTLRNTIEGQGVEICFELYNPRIQEIQVVKLEKRLDDNLLY 189

Query: 166 LRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQH 223
           LRDALP+YSTF  +M+P        VP+N +KVK+KP+PW  RWER  +  KGI   D  
Sbjct: 190 LRDALPEYSTFDVNMKPVPQEACQEVPVNKLKVKMKPKPWSKRWERPNFNIKGI-RFDLA 248

Query: 224 ITEKMKGQKKKLEEPWEKYDLMKEY 248
           +TE+   + +K  +PW ++D+M+EY
Sbjct: 249 LTEEQMKEAQKWNKPWIEFDMMREY 273

Mus musculus (taxid: 10090)

>sp|P82413|RK19_SPIOL 50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%)

Query: 84  IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY 143
           +P    G I+ +      +  +   + GI I ++  G+     +R ++  +G+EI + +Y
Sbjct: 140 VPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLY 199

Query: 144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTF 176
            P I  I V+   K     L YLRD LP+ STF
Sbjct: 200 SPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTF 232

Located at the 30S-50S ribosomal subunit interface and binds directly to 23S ribosomal RNA.

Spinacia oleracea (taxid: 3562)

>sp|Q7MA03|RL19_WOLSU 50S ribosomal protein L19 OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=rplS PE=3 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 6/109 (5%)

Query: 62  FRNQVREKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCG 120
            RN+  E  E++ +  +    +IP F  G  L V     + D  + + F GICI  R  G
Sbjct: 1   MRNRYIESFEKAQIADK----NIPQFKAGDTLRVGVKIQEGDKTRVQNFEGICISVRGTG 56

Query: 121 LRHEFVLRNV-VDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
               F +R +  +N+G+E  + +Y  ++ ++T+LR+ +     L YLRD
Sbjct: 57  TGKTFTIRKMGANNVGVERIFPLYSDSLESVTLLRVGRVRRAKLYYLRD 105

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Wolinella succinogenes (taxid: 844)

>sp|A0RPR5|RL19_CAMFF 50S ribosomal protein L19 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=rplS PE=3 SV=1

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 83  DIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDN-LGIEIAY 140
            +P F  G  L +    K  D  + + F GICI +R  G    F++R +  N +G+E  +
Sbjct: 18  SVPDFRAGDTLRIAIRIKEGDKTRVQNFEGICIARRGSGSGETFIIRKIGANSVGVERIF 77

Query: 141 DMYDPTIHNITVLRLEKRLDDDLLYLRD 168
            +Y  ++ +ITVLR  +     L YLRD
Sbjct: 78  PIYSESLESITVLRRGRIRRSKLFYLRD 105

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Campylobacter fetus subsp. fetus (strain 82-40) (taxid: 360106)

>sp|A7GZB0|RL19_CAMC5 50S ribosomal protein L19 OS=Campylobacter curvus (strain 525.92) GN=rplS PE=3 SV=1

 Score = 52.4 bits (124), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 4/88 (4%)

Query: 84  IPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDN-LGIEIAY 140
           +P F  G  L V +   H+ +KTR   F GICI +R  G+   F++R +  N +G+E  +
Sbjct: 19  VPDFRAGDTLRV-AIRIHEGDKTRVQNFEGICIARRGSGVGETFIIRKIGANSVGVERIF 77

Query: 141 DMYDPTIHNITVLRLEKRLDDDLLYLRD 168
            +Y  +I  I VLR  +     L YLRD
Sbjct: 78  PIYSDSIEEIVVLRKGRVRRAKLFYLRD 105

This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.

Campylobacter curvus (strain 525.92) (taxid: 360105)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
157105510	318	39S ribosomal protein L19, mitochondrial	0.914	0.836	0.597	1e-91
58396608	310	AGAP001139-PA [Anopheles gambiae str. PE	0.872	0.819	0.602	5e-91
312385920	386	hypothetical protein AND_00165 [Anophele	0.865	0.652	0.599	2e-90
170070812	311	39S ribosomal protein L19, mitochondrial	0.872	0.816	0.598	5e-89
170055146	311	39S ribosomal protein L19, mitochondrial	0.872	0.816	0.594	9e-89
195157386	319	GL12468 [Drosophila persimilis] gi|19411	0.869	0.793	0.581	6e-87
198454984	319	GA20783 [Drosophila pseudoobscura pseudo	0.869	0.793	0.581	1e-86
195444677	305	GK11808 [Drosophila willistoni] gi|19416	0.914	0.872	0.556	2e-86
194743514	313	GF18180 [Drosophila ananassae] gi|190627	0.869	0.808	0.577	2e-86
195392078	301	GJ22671 [Drosophila virilis] gi|19415277	0.907	0.877	0.571	2e-86

>gi|157105510|ref|XP_001648902.1| 39S ribosomal protein L19, mitochondrial precursor [Aedes aegypti] gi|108880086|gb|EAT44311.1| AAEL004306-PA [Aedes aegypti]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 159/266 (59%), Positives = 207/266 (77%)

Query: 24  SKNSPLQFENAENGEKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVID 83
           ++ SP         E+K  +P E RF+YQEFLPDP+L++RN +REKLER DM+ RRS ID
Sbjct: 51  TRQSPNPPTITSGTERKSIVPPEYRFVYQEFLPDPKLEWRNPIREKLERMDMLDRRSNID 110

Query: 84  IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY 143
           IP F+VGS+++VTS+D H   KT +F+GICI K  CGLR  F+LRNVVDN G+E++YDMY
Sbjct: 111 IPEFYVGSVVAVTSSDVHAVGKTSRFLGICILKEKCGLRARFILRNVVDNQGMEVSYDMY 170

Query: 144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPR 203
           DPT+  + VLRLEKRLDD LLYLRDAL +YSTF  +ME E L +GAPVP+NDIKV LKPR
Sbjct: 171 DPTLLKVEVLRLEKRLDDHLLYLRDALDEYSTFDLNMESEILPEGAPVPVNDIKVTLKPR 230

Query: 204 PWVGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSE 263
           PW  RWER   +G+ ++++H  EK + + +++  PWEKYDLMKEYR++IPEEEQ+EIF+E
Sbjct: 231 PWFARWERHELQGVANIEEHTNEKKRRKAERVATPWEKYDLMKEYRKSIPEEEQKEIFAE 290

Query: 264 VFSELHQLSLSNKKLKKSRVYVKPKK 289
           V+S+LHQL L+ KK+K+ R +VKP K
Sbjct: 291 VYSQLHQLELTRKKMKRKRTFVKPTK 316

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58396608|ref|XP_322023.2| AGAP001139-PA [Anopheles gambiae str. PEST] gi|55234194|gb|EAA01492.2| AGAP001139-PA [Anopheles gambiae str. PEST]

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 153/254 (60%), Positives = 203/254 (79%)

Query: 38  EKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTS 97
           E+K  IP   R++YQEFLPDP++++RN VREKLER DM+ RR+ IDIP F+VGS+++VTS
Sbjct: 57  ERKSIIPPNYRYVYQEFLPDPKVEWRNSVREKLERKDMLDRRANIDIPEFYVGSVVAVTS 116

Query: 98  ADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEK 157
           +D H  NKT +FVGICI +  CGLR  F+LRNV+D+ GIEI+YD+YDPT+  I VLRLEK
Sbjct: 117 SDPHAENKTARFVGICILREKCGLRARFILRNVIDHQGIEISYDLYDPTLQKIEVLRLEK 176

Query: 158 RLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGI 217
           RLDD+LLYLRDAL +YSTF  +MEPE L +G+PVP+ND+KV LKPRPW  RWER   +G+
Sbjct: 177 RLDDNLLYLRDALDEYSTFDVNMEPEILPEGSPVPVNDVKVVLKPRPWYARWERHNLQGV 236

Query: 218 DDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKK 277
            ++++H  E+ + + + +  PWEKYDLMKEYRR+IPEEEQ+EIF+E++S+LH L L+ KK
Sbjct: 237 ANIEEHTNERRRRKAEAVATPWEKYDLMKEYRRSIPEEEQKEIFTEIYSQLHSLELARKK 296

Query: 278 LKKSRVYVKPKKTG 291
           +K+ R +VKP K  
Sbjct: 297 MKRKRTFVKPTKLA 310

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312385920|gb|EFR30308.1| hypothetical protein AND_00165 [Anopheles darlingi]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 151/252 (59%), Positives = 198/252 (78%)

Query: 38  EKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTS 97
           E+K  IP   RF YQEFLPDP++++RN +REKLER DM++RR+ IDIP F+VGS+L+VTS
Sbjct: 133 ERKSIIPPNYRFAYQEFLPDPKIEWRNSLREKLERKDMLERRANIDIPEFYVGSVLAVTS 192

Query: 98  ADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEK 157
           +D+H  NKT +FVGICI +   GLRH F+LRNV+D+  IE++YD+YDPT+H I VLRLEK
Sbjct: 193 SDQHAENKTARFVGICILREKAGLRHRFILRNVIDHQAIEVSYDLYDPTVHKIEVLRLEK 252

Query: 158 RLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGI 217
           RLDD L+YLRDAL +YSTF  +MEPE L +G PVP+ND+KV LKP PW  RWER   +G+
Sbjct: 253 RLDDHLIYLRDALDEYSTFDINMEPEILPEGTPVPVNDVKVVLKPHPWYARWERHNLQGV 312

Query: 218 DDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKK 277
            ++++H  E+ + +   +  PWEKYDLMKEYRR+IPEEEQ+EIF+E++S LH L L  KK
Sbjct: 313 ANIEEHTNERRRRKAALVATPWEKYDLMKEYRRSIPEEEQKEIFTEIYSTLHSLELQRKK 372

Query: 278 LKKSRVYVKPKK 289
           +K+ R +VKP K
Sbjct: 373 MKRKRTFVKPTK 384

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170070812|ref|XP_001869719.1| 39S ribosomal protein L19, mitochondrial [Culex quinquefasciatus] gi|167866729|gb|EDS30112.1| 39S ribosomal protein L19, mitochondrial [Culex quinquefasciatus]

 Score =  333 bits (854), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 152/254 (59%), Positives = 198/254 (77%)

Query: 38  EKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTS 97
           E+K  +P + RF+YQEFLPDP++++RN +REKLER DM+ RR+ IDIP F+VGS+++VT 
Sbjct: 58  ERKSIVPPDYRFVYQEFLPDPKIEWRNPIREKLERMDMLDRRANIDIPEFYVGSVVAVTC 117

Query: 98  ADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEK 157
           +D H   KT +F+GICI +  CGLR  F+LRNVVDN GIE+ YDMYDPT+  + VLRLEK
Sbjct: 118 SDVHAVGKTSRFLGICILREKCGLRARFILRNVVDNQGIEVMYDMYDPTLLKVEVLRLEK 177

Query: 158 RLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGI 217
           RLD+ LLYLRDAL +YSTF  +ME E L +GAPVP+ND+KV LKPRPW  RWER    G+
Sbjct: 178 RLDEHLLYLRDALDEYSTFDLNMEAEILPEGAPVPVNDVKVTLKPRPWYARWERHNLAGV 237

Query: 218 DDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKK 277
            +VD+H  EK   +  ++  PWE++DLMK+YRRTIP+EEQ+EIF+EV+S+LHQL L+ KK
Sbjct: 238 ANVDEHTNEKKARKAARVATPWERFDLMKQYRRTIPDEEQKEIFAEVYSQLHQLELTRKK 297

Query: 278 LKKSRVYVKPKKTG 291
           LK+ R +VKP K  
Sbjct: 298 LKRKRTFVKPTKLA 311

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055146|ref|XP_001863451.1| 39S ribosomal protein L19, mitochondrial [Culex quinquefasciatus] gi|167875195|gb|EDS38578.1| 39S ribosomal protein L19, mitochondrial [Culex quinquefasciatus]

 Score =  332 bits (852), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 151/254 (59%), Positives = 198/254 (77%)

Query: 38  EKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTS 97
           E+K  +P + RF+YQEFLPDP++++RN +REKLER DM+ RR+ IDIP F+VGS+++VT 
Sbjct: 58  ERKSIVPPDYRFVYQEFLPDPKIEWRNPIREKLERMDMLDRRANIDIPEFYVGSVVAVTC 117

Query: 98  ADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEK 157
           +D H   KT +F+GICI +  CGLR  F+LRNVVDN G+E+ YDMYDPT+  + VLRLEK
Sbjct: 118 SDVHAVGKTSRFLGICILREKCGLRARFILRNVVDNQGVEVMYDMYDPTLLKVEVLRLEK 177

Query: 158 RLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGI 217
           RLD+ LLYLRDAL +YSTF  +ME E L +GAPVP+ND+KV LKPRPW  RWER    G+
Sbjct: 178 RLDEHLLYLRDALDEYSTFDLNMEAEILPEGAPVPVNDVKVTLKPRPWYARWERHNLAGV 237

Query: 218 DDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKK 277
            +VD+H  EK   +  ++  PWE++DLMK+YRRTIP+EEQ+EIF+EV+S+LHQL L+ KK
Sbjct: 238 ANVDEHTNEKKARKAARVATPWERFDLMKQYRRTIPDEEQKEIFAEVYSQLHQLELTRKK 297

Query: 278 LKKSRVYVKPKKTG 291
           LK+ R +VKP K  
Sbjct: 298 LKRKRTFVKPTKLA 311

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195157386|ref|XP_002019577.1| GL12468 [Drosophila persimilis] gi|194116168|gb|EDW38211.1| GL12468 [Drosophila persimilis]

 Score =  327 bits (837), Expect = 6e-87,   Method: Compositional matrix adjust.
 Identities = 147/253 (58%), Positives = 200/253 (79%)

Query: 39  KKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSA 98
           +K  +P   RF+Y EFLPDP++++RN +REKLER DM+ RR  ID+P F+VGSI++VTS+
Sbjct: 67  RKPIVPSNYRFIYPEFLPDPKVEWRNPIREKLERLDMLDRRRQIDLPEFYVGSIMAVTSS 126

Query: 99  DKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKR 158
           D H   KT +FVGICI +  CGLR  FVLRNV+D+ G+E+ Y++YDPTI  + VLRLEKR
Sbjct: 127 DPHAAGKTSRFVGICINRDRCGLRARFVLRNVIDHQGMEVVYELYDPTIQKVEVLRLEKR 186

Query: 159 LDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGID 218
           LDD+L YLRDALP++STF  +ME E+L +GAPVP+NDIKV L+PRPW+ RWER+  +G+ 
Sbjct: 187 LDDNLFYLRDALPEFSTFDENMEAEHLEEGAPVPVNDIKVVLRPRPWLERWERQNLRGVA 246

Query: 219 DVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKL 278
           ++DQ+I +K +   +K+++PWEKYDLMK+YR TIPEEEQ+E+F+EV +ELH L L  K+ 
Sbjct: 247 NIDQYIKDKHRKSAEKVQKPWEKYDLMKQYRSTIPEEEQKEVFAEVHTELHSLELQRKRN 306

Query: 279 KKSRVYVKPKKTG 291
           K+ R +VKPK+  
Sbjct: 307 KRKRTFVKPKQLA 319

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198454984|ref|XP_001359806.2| GA20783 [Drosophila pseudoobscura pseudoobscura] gi|198133043|gb|EAL28958.2| GA20783 [Drosophila pseudoobscura pseudoobscura]

 Score =  325 bits (834), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 147/253 (58%), Positives = 200/253 (79%)

Query: 39  KKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSA 98
           +K  +P   RF+Y EFLPDP++++RN +REKLER DM+ RR  ID+P F+VGSI++VTS+
Sbjct: 67  RKPIVPSNYRFIYPEFLPDPKVEWRNPIREKLERLDMLDRRRQIDLPEFYVGSIMAVTSS 126

Query: 99  DKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKR 158
           D H   KT +FVGICI +  CGLR  FVLRNV+D+ G+E+ Y++YDPTI  + VLRLEKR
Sbjct: 127 DPHAAGKTSRFVGICINRDRCGLRARFVLRNVIDHQGMEVVYELYDPTIQKVEVLRLEKR 186

Query: 159 LDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGID 218
           LDD+L YLRDALP++STF  +ME E+L +GAPVP+NDIKV L+PRPW+ RWER+  +G+ 
Sbjct: 187 LDDNLFYLRDALPEFSTFDENMEAEHLEEGAPVPVNDIKVILRPRPWLERWERQNLRGVA 246

Query: 219 DVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKL 278
           ++DQ+I +K +   +K+++PWEKYDLMK+YR TIPEEEQ+E+F+EV +ELH L L  K+ 
Sbjct: 247 NIDQYIKDKHRKSAEKVQKPWEKYDLMKQYRSTIPEEEQKEVFAEVHTELHSLELQRKRN 306

Query: 279 KKSRVYVKPKKTG 291
           K+ R +VKPK+  
Sbjct: 307 KRKRTFVKPKQLA 319

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195444677|ref|XP_002069977.1| GK11808 [Drosophila willistoni] gi|194166062|gb|EDW80963.1| GK11808 [Drosophila willistoni]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 148/266 (55%), Positives = 201/266 (75%)

Query: 26  NSPLQFENAENGEKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIP 85
           ++P    N     +K  +P   RF+Y EFLPDP++++RN VREKLER DM+ RR  +D+P
Sbjct: 40  STPTLPNNNTPAARKPIVPGHYRFVYPEFLPDPKVQWRNTVREKLERLDMLARRGQVDLP 99

Query: 86  SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDP 145
            F+VGSIL+VTS+D H   KT +FVGICI +  CGLR  F+LRNV+D+ G+E+ Y++YDP
Sbjct: 100 EFYVGSILAVTSSDPHAAGKTSRFVGICIHRERCGLRARFILRNVIDHQGMEVLYELYDP 159

Query: 146 TIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPW 205
           TI  + VLRLEKRLDD L YLRDALP++STF  +ME E+L +GAPVP+NDIKV L+PRPW
Sbjct: 160 TIQKVEVLRLEKRLDDSLFYLRDALPEFSTFDENMEAEHLEEGAPVPVNDIKVVLRPRPW 219

Query: 206 VGRWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVF 265
           + RWER+   G+ +++Q+I +K +    K+++PWEKYDLMK+YR TIPEEEQ+EIF+EV 
Sbjct: 220 LERWERQNLLGVANIEQYIKDKHRKSAAKVQKPWEKYDLMKQYRATIPEEEQKEIFAEVH 279

Query: 266 SELHQLSLSNKKLKKSRVYVKPKKTG 291
           +ELH L L  K+ K+ R ++KPK+  
Sbjct: 280 TELHTLELQRKRNKRKRSFIKPKQLA 305

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194743514|ref|XP_001954245.1| GF18180 [Drosophila ananassae] gi|190627282|gb|EDV42806.1| GF18180 [Drosophila ananassae]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 146/253 (57%), Positives = 196/253 (77%)

Query: 39  KKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSA 98
           +K  IP   RF+Y EFLPDP++++RN +REKLER DM+ RR  ID+P F+VGSI++VTS+
Sbjct: 61  RKPVIPANYRFIYPEFLPDPKIEWRNPIREKLERMDMLDRRRQIDLPEFYVGSIMAVTSS 120

Query: 99  DKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKR 158
           D H   K  +FVGICI +  CGLR  F+LRNV+D+ GIE+ Y++YDPTI  + VLRLEKR
Sbjct: 121 DPHAEGKVSRFVGICIHRDRCGLRARFILRNVIDHQGIEVIYELYDPTIQKVEVLRLEKR 180

Query: 159 LDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGID 218
           LDD L YLRDALP+YSTF  +ME E L +GAPVP+NDIKV L+PRPW+ RWER+  +G+ 
Sbjct: 181 LDDSLFYLRDALPEYSTFDENMEAEQLEEGAPVPVNDIKVVLRPRPWLERWERQNLRGVA 240

Query: 219 DVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSELHQLSLSNKKL 278
           ++DQ++ +K +   +++++PWEKYDLMK+YR TIPEEEQ EIF+EV++ELH   L  K+ 
Sbjct: 241 NIDQYLKDKHRQSARRVQKPWEKYDLMKQYRATIPEEEQNEIFAEVYAELHAQELQRKRN 300

Query: 279 KKSRVYVKPKKTG 291
           K+ R +VKPK+  
Sbjct: 301 KRKRTFVKPKQLA 313

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195392078|ref|XP_002054686.1| GJ22671 [Drosophila virilis] gi|194152772|gb|EDW68206.1| GJ22671 [Drosophila virilis]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 151/264 (57%), Positives = 197/264 (74%)

Query: 28  PLQFENAENGEKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSF 87
           P Q E      +K  +P   RF+Y EFLPDP++++RN VREKLER DM+ RR  I++P F
Sbjct: 38  PQQQEAPGPSVRKPIVPAHYRFVYPEFLPDPKVEWRNSVREKLERLDMLDRRRQIELPEF 97

Query: 88  FVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTI 147
           +VGSIL+VTS+D H   KT +FVGICI +  CGLR  F+LRNV+D+ GIE+ Y++YDPTI
Sbjct: 98  YVGSILAVTSSDPHAAGKTSRFVGICIHRERCGLRARFILRNVIDHQGIEVVYELYDPTI 157

Query: 148 HNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVG 207
             + VLRLEKRLDD L YLRDALP+YSTF   ME E L +G PVP+NDIKV L+PRPW+ 
Sbjct: 158 QKVEVLRLEKRLDDSLFYLRDALPEYSTFDEHMEAETLEEGTPVPVNDIKVVLRPRPWLE 217

Query: 208 RWERKGYKGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPEEEQEEIFSEVFSE 267
           RWER+   G+ ++DQ++ +K +    K+++PWEKYDLMK+YR TIPEEEQ+EIF+EV +E
Sbjct: 218 RWERQNLLGVANIDQYLKDKHRKSAAKVQKPWEKYDLMKQYRSTIPEEEQKEIFAEVHTE 277

Query: 268 LHQLSLSNKKLKKSRVYVKPKKTG 291
           LH L L  K+ K+ R +VKPK+  
Sbjct: 278 LHTLELQRKRNKRKRTFVKPKQLA 301

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	291
FB|FBgn0037608	306	mRpL19 "mitochondrial ribosoma	0.862	0.820	0.462	6.2e-62
WB|WBGene00022470	288	mrpl-19 [Caenorhabditis elegan	0.687	0.694	0.437	3.5e-43
UNIPROTKB|F1NEW6	253	MRPL19 "Uncharacterized protei	0.690	0.794	0.411	2e-40
ZFIN|ZDB-GENE-040801-55	291	mrpl19 "mitochondrial ribosoma	0.838	0.838	0.359	2.3e-39
RGD|1587381	292	Mrpl19 "mitochondrial ribosoma	0.714	0.712	0.394	2.9e-39
UNIPROTKB|F1MMM8	292	MRPL19 "39S ribosomal protein	0.690	0.688	0.402	9.9e-39
UNIPROTKB|Q2HJI0	292	MRPL19 "39S ribosomal protein	0.690	0.688	0.402	9.9e-39
UNIPROTKB|P49406	292	MRPL19 "39S ribosomal protein	0.697	0.695	0.394	2.6e-38
UNIPROTKB|I3LNJ0	292	MRPL19 "Uncharacterized protei	0.694	0.691	0.401	3.4e-38
MGI|MGI:1926274	292	Mrpl19 "mitochondrial ribosoma	0.697	0.695	0.401	8.9e-38

FB|FBgn0037608 mRpL19 "mitochondrial ribosomal protein L19" [Drosophila melanogaster (taxid:7227)]

 Score = 633 (227.9 bits), Expect = 6.2e-62, P = 6.2e-62
 Identities = 116/251 (46%), Positives = 162/251 (64%)

Query:    39 KKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSA 98
             +K  IP   RF+Y EFLPDP++++RN VREKLER DM+ RR  ID+P F+VGS+L+VTS+
Sbjct:    54 RKTIIPANYRFVYPEFLPDPKVEWRNLVREKLERLDMLDRRKQIDLPEFYVGSVLAVTSS 113

Query:    99 DKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVXXXXXX 158
             D H   KT +FVGICI +  CGLR  F+LRNV+D+ G+E+ Y++YDPTI  I V      
Sbjct:   114 DPHAAGKTSRFVGICINRDRCGLRARFILRNVIDHQGMEVVYELYDPTILKIEVLRLEKR 173

Query:   159 XXXXXXXXXXXXPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGID 218
                         P+YSTF  +ME E L +GAPVP+NDIKV L+PRPW+ RWER+  +G+ 
Sbjct:   174 LDDSLFYLRDALPEYSTFDENMEAEPLEEGAPVPVNDIKVVLRPRPWLERWERQNLRGVA 233

Query:   219 DVDQHITEKMKGQKKKLEEPWEKYDLMKEYRRTIPXXXXXXXXXXXXXXLHQXXXXXXXX 278
             ++D+++ +K +    K+++PWEKYD+MK+YR +IP              LH         
Sbjct:   234 NIDEYLKDKHRLSAAKVQKPWEKYDMMKDYRSSIPEEEQTEIFAEVHTELHALELQRKRN 293

Query:   279 XXXRVYVKPKK 289
                R ++KPK+
Sbjct:   294 KRKRTFIKPKQ 304

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

WB|WBGene00022470 mrpl-19 [Caenorhabditis elegans (taxid:6239)]

 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 88/201 (43%), Positives = 124/201 (61%)

Query:    50 MYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKF 109
             +Y +FL  P    RN ++E+LER DM++RR  IDIP F+VGSI++VTS+DK+  +K  +F
Sbjct:    48 IYPDFLQSPVWNRRNALKEELERQDMLERRMNIDIPEFYVGSIVAVTSSDKNLGSKEHRF 107

Query:   110 VGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXXXXXXX 169
             VGICI++   GL H+F LRN ++N+G+E+ YD+Y+PTI  I                   
Sbjct:   108 VGICIRREKEGLLHQFTLRNTIENIGVEVVYDLYNPTIKKIETLKLEKRLDNDLSYLVDA 167

Query:   170 XPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMK 229
              P+YSTF F MEP+    G P+P+N+ KVKLK  PW  RWE    +GI+D     T   K
Sbjct:   168 LPEYSTFDFHMEPQAHPAGTPIPVNECKVKLKTPPWTRRWEVASVRGIEDTWTQATPWFK 227

Query:   230 GQ-KKKLEEPWEKYDLMKEYR 249
              +  K +   +EKYDL+ +YR
Sbjct:   228 RKLHKTIVNDYEKYDLIADYR 248

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|F1NEW6 MRPL19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 84/204 (41%), Positives = 127/204 (62%)

Query:    45 QENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPN 104
             +E RF+  EF+P P  +  + ++  +ER DMI+RR V +IP F+VGSIL+VT+AD +   
Sbjct:    34 EERRFLSPEFIP-PRGR-TDPLKFYMERKDMIQRRKVFNIPEFYVGSILAVTTADPYADG 91

Query:   105 KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXX 164
             KT +FVGICIQ+   GL   FVLRNV+++ G+EI Y++Y P I  ITV            
Sbjct:    92 KTNRFVGICIQRGGRGLGATFVLRNVIEDQGVEICYELYSPRIQEITVLKLEKRLDDNLT 151

Query:   165 XXXXXXPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHI 224
                   P+YSTF  +M+P   LD   +P+N ++V++KP+PW  RWER  Y  I  +   +
Sbjct:   152 YLRDALPEYSTFDMNMKPVSHLDHEEIPVNKLQVRMKPKPWSKRWERPKYN-IKGIKFEL 210

Query:   225 TEKMKGQKKKLEEPWEKYDLMKEY 248
              EK   + +K ++PW ++D+++EY
Sbjct:   211 PEKKMKEAQKWKQPWLEFDMLREY 234

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA

ZFIN|ZDB-GENE-040801-55 mrpl19 "mitochondrial ribosomal protein L19" [Danio rerio (taxid:7955)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 91/253 (35%), Positives = 139/253 (54%)

Query:     1 MLSCISRVHRSTRLNSLTILRNLSKNSPLQFENAENG---EKKLSIPQENRFMYQEFLPD 57
             +L  +  + ++ R  S +++R+ S + P +F         +K        R +  EF+P 
Sbjct:    24 LLRFLRNIPQTERFLSTSVMRHAS-DGPSKFIPPTKPVFTDKSQEEASVRRVLSPEFIP- 81

Query:    58 PELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKR 117
             P  +  +Q++  +ER DMI+RR V+ IP F+VGSIL+VT  D +      +FVGIC Q+ 
Sbjct:    82 PRQR-TDQIKFYIERKDMIQRRKVLQIPEFYVGSILAVTMTDPYASGNLNRFVGICTQRS 140

Query:   118 YCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXXXXXXXXPQYSTFP 177
               GL   F+LRNV+D  G+EI Y++Y P +  I V                  P+YSTF 
Sbjct:   141 GKGLGATFILRNVIDGQGVEICYELYSPRMRKIEVLKLEKRLDDNLMYLRDALPEYSTFD 200

Query:   178 FDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQHITEKMKGQKKKL 235
             FDM+P +      +P+N +KVK+KP+PW  RWER  +  KGI   D ++T +     +K 
Sbjct:   201 FDMQPVHYELTKDIPVNPLKVKMKPKPWSKRWERPKFDIKGIR-FDLYLTPEQMEHAQKW 259

Query:   236 EEPWEKYDLMKEY 248
              EPW +YD++KEY
Sbjct:   260 GEPWREYDMLKEY 272

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

RGD|1587381 Mrpl19 "mitochondrial ribosomal protein L19" [Rattus norvegicus (taxid:10116)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 84/213 (39%), Positives = 129/213 (60%)

Query:    38 EKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTS 97
             +++ +  +E RF+  EF+P P  +  N ++ ++ER DM+ RR V+ IP F+VGSIL VT+
Sbjct:    64 DRRRAPEEERRFLSPEFIP-PRGR-TNPLKFQIERRDMLDRRKVLPIPEFYVGSILRVTT 121

Query:    98 ADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVXXXXX 157
             AD +   KT +F+GICI++   GL   F LRN ++  G+EI +++Y+P IH I V     
Sbjct:   122 ADPYASGKTSQFLGICIKRSGSGLGATFTLRNTIEGQGVEICFELYNPRIHEIQVVKLEK 181

Query:   158 XXXXXXXXXXXXXPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGY--K 215
                          P+YSTF  +M+P  L     VP+N +KVK+KP+PW  RWER  +  K
Sbjct:   182 RLDDSLLYLRDALPEYSTFDVNMKPVPLESCQEVPVNKLKVKMKPKPWSKRWERPNFNIK 241

Query:   216 GIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 248
             GI   D  +TE+   + +K  +PW ++D+M+EY
Sbjct:   242 GIR-FDLALTEEQMKEAQKWSKPWLEFDMMREY 273

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0031965 "nuclear membrane" evidence=IEA;ISO

UNIPROTKB|F1MMM8 MRPL19 "39S ribosomal protein L19, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 83/206 (40%), Positives = 126/206 (61%)

Query:    45 QENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPN 104
             +E+RF+  EF+P P  +  N ++ ++ER DM++RR ++ IP F+VGSIL VT+AD +   
Sbjct:    71 RESRFLSPEFIP-PRGR-TNPLKFQIERKDMLERRKILHIPEFYVGSILRVTTADPYANG 128

Query:   105 KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXX 164
             KT +F+GICIQ+   GL   F+LRN ++  G+EI +++Y+P I  I V            
Sbjct:   129 KTSQFLGICIQRSGKGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLEKRLDDSLL 188

Query:   165 XXXXXXPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQ 222
                   P+YSTF  +M+P        VPIN +KVK+KP+PW  RWER  +  KGI   D 
Sbjct:   189 YLRDALPEYSTFDMNMKPVAQEPSREVPINQLKVKMKPKPWSKRWERPKFNVKGIR-FDL 247

Query:   223 HITEKMKGQKKKLEEPWEKYDLMKEY 248
              +TE+   + +K  +PW ++D+M+EY
Sbjct:   248 CLTEEQMKEAQKWSQPWLEFDMMREY 273

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q2HJI0 MRPL19 "39S ribosomal protein L19, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 83/206 (40%), Positives = 126/206 (61%)

Query:    45 QENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPN 104
             +E+RF+  EF+P P  +  N ++ ++ER DM++RR ++ IP F+VGSIL VT+AD +   
Sbjct:    71 RESRFLSPEFIP-PRGR-TNPLKFQIERKDMLERRKILHIPEFYVGSILRVTTADPYANG 128

Query:   105 KTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXXXXX 164
             KT +F+GICIQ+   GL   F+LRN ++  G+EI +++Y+P I  I V            
Sbjct:   129 KTSQFLGICIQRSGKGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLEKRLDDSLL 188

Query:   165 XXXXXXPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGY--KGIDDVDQ 222
                   P+YSTF  +M+P        VPIN +KVK+KP+PW  RWER  +  KGI   D 
Sbjct:   189 YLRDALPEYSTFDMNMKPVAQEPSREVPINQLKVKMKPKPWSKRWERPKFNVKGIR-FDL 247

Query:   223 HITEKMKGQKKKLEEPWEKYDLMKEY 248
              +TE+   + +K  +PW ++D+M+EY
Sbjct:   248 CLTEEQMKEAQKWSQPWLEFDMMREY 273

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P49406 MRPL19 "39S ribosomal protein L19, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 86/218 (39%), Positives = 128/218 (58%)

Query:    38 EKKLSIPQENRFMYQEFLP-----DPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSI 92
             +K   +  E RF+  EF+P     DP LKF+      +ER DM++RR V+ IP F+VGSI
Sbjct:    64 DKHRPVEPERRFLSPEFIPRRGRTDP-LKFQ------IERKDMLERRKVLHIPEFYVGSI 116

Query:    93 LSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITV 152
             L VT+AD +   K  +F+GICIQ+   GL   F+LRNV++  G+EI +++Y+P +  I V
Sbjct:   117 LRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQV 176

Query:   153 XXXXXXXXXXXXXXXXXXPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERK 212
                               P+YSTF  +M+P        VP+N++KVK+KP+PW  RWER 
Sbjct:   177 VKLEKRLDDSLLYLRDALPEYSTFDVNMKPVVQEPNQKVPVNELKVKMKPKPWSKRWERP 236

Query:   213 GY--KGIDDVDQHITEKMKGQKKKLEEPWEKYDLMKEY 248
              +  KGI   D  +TE+   + +K  +PW ++D+M+EY
Sbjct:   237 NFNIKGIR-FDLCLTEQQMKEAQKWNQPWLEFDMMREY 273

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0031965 "nuclear membrane" evidence=IDA

UNIPROTKB|I3LNJ0 MRPL19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 84/209 (40%), Positives = 126/209 (60%)

Query:    44 PQ--ENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH 101
             PQ  E RF+  EF+P P  +  N ++ ++ER DM++RR ++ IP F+VGSIL VT+AD +
Sbjct:    68 PQRPETRFLSPEFIP-PRGR-TNPLKFQIERKDMLERRKILHIPEFYVGSILRVTTADPY 125

Query:   102 DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXX 161
                KT +F+GICIQ+   GL   F+LRN ++  G+EI +++Y+P I  I V         
Sbjct:   126 ASAKTSQFLGICIQRSGSGLGATFILRNTIEGQGVEICFELYNPRIQEIQVVKLEKRLDN 185

Query:   162 XXXXXXXXXPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGY--KGIDD 219
                      P+YSTF  +M+P        VP+N +KVK+KP+PW  RWER  +  KGI  
Sbjct:   186 SLLYLRDALPEYSTFDVNMKPITQEFNQEVPVNQLKVKMKPKPWSKRWERPKFNIKGIR- 244

Query:   220 VDQHITEKMKGQKKKLEEPWEKYDLMKEY 248
              D  +TE+   + +K  +PW ++D+M+EY
Sbjct:   245 FDLCLTEEQMREAQKWSQPWLEFDMMREY 273

GO:0031965 "nuclear membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1926274 Mrpl19 "mitochondrial ribosomal protein L19" [Mus musculus (taxid:10090)]

 Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
 Identities = 84/209 (40%), Positives = 125/209 (59%)

Query:    43 IPQ-ENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH 101
             +P+ E RF+  EF+P P  +  N ++ K+ER DM+ RR V+ IP F+VGSIL VT+AD +
Sbjct:    68 VPEDERRFLSPEFIP-PRGR-TNPLKFKIERKDMLDRRKVLPIPEFYVGSILRVTTADPY 125

Query:   102 DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVXXXXXXXXX 161
                KT +F+GICI++   GL   F LRN ++  G+EI +++Y+P I  I V         
Sbjct:   126 ASGKTSQFLGICIKRSGNGLGATFTLRNTIEGQGVEICFELYNPRIQEIQVVKLEKRLDD 185

Query:   162 XXXXXXXXXPQYSTFPFDMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGY--KGIDD 219
                      P+YSTF  +M+P        VP+N +KVK+KP+PW  RWER  +  KGI  
Sbjct:   186 NLLYLRDALPEYSTFDVNMKPVPQEACQEVPVNKLKVKMKPKPWSKRWERPNFNIKGIR- 244

Query:   220 VDQHITEKMKGQKKKLEEPWEKYDLMKEY 248
              D  +TE+   + +K  +PW ++D+M+EY
Sbjct:   245 FDLALTEEQMKEAQKWNKPWIEFDMMREY 273

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005761 "mitochondrial ribosome" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISS

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0031965 "nuclear membrane" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R8M4	RM19_PONAB	No assigned EC number	0.4678	0.6975	0.6952	yes	N/A
P49406	RM19_HUMAN	No assigned EC number	0.4761	0.6701	0.6678	yes	N/A
Q2HJI0	RM19_BOVIN	No assigned EC number	0.4757	0.6907	0.6883	yes	N/A
Q9VHN6	RM19_DROME	No assigned EC number	0.5770	0.8694	0.8267	yes	N/A
Q95Y83	RM19_CAEEL	No assigned EC number	0.4522	0.8144	0.8229	yes	N/A
Q9D338	RM19_MOUSE	No assigned EC number	0.4780	0.6872	0.6849	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	291
pfam01245	113	pfam01245, Ribosomal_L19, Ribosomal protein L19	1e-12
COG0335	115	COG0335, RplS, Ribosomal protein L19 [Translation,	2e-07
TIGR01024	113	TIGR01024, rplS_bact, ribosomal protein L19, bacte	6e-06
PRK05338	116	PRK05338, rplS, 50S ribosomal protein L19; Provisi	5e-04

>gnl|CDD|201683 pfam01245, Ribosomal_L19, Ribosomal protein L19

 Score = 62.9 bits (154), Expect = 1e-12
 Identities = 34/107 (31%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 64  NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGL 121
             + +++E   + K     D+P F VG  + V    K + NK R   F G+ I KR  GL
Sbjct: 1   MNLIKEIEAEQLKK-----DLPEFRVGDTVKVHVKIK-EGNKERIQVFEGVVIAKRGRGL 54

Query: 122 RHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
              F +R +   +G+E  + ++ P I  I V+R  K     L YLRD
Sbjct: 55  NSTFTVRKISQGVGVERVFPLHSPRIDKIEVVRRGKVRRAKLYYLRD 101

Length = 113

>gnl|CDD|223412 COG0335, RplS, Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

 Score = 48.4 bits (116), Expect = 2e-07
 Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 83  DIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAY 140
           DIPSF  G  + V      + +K R   F G+ I +R  G+   F +R +   +G+E  +
Sbjct: 17  DIPSFRPGDTVRVHVKIV-EGSKERVQAFEGVVIARRGRGISETFTVRKISYGVGVERVF 75

Query: 141 DMYDPTIHNITVLRLEKRLDDDLLYLRD 168
            ++ P I +I V+R  K     L YLR+
Sbjct: 76  PLHSPLIESIEVVRRGKVRRAKLYYLRE 103

Length = 115

>gnl|CDD|130096 TIGR01024, rplS_bact, ribosomal protein L19, bacterial type

 Score = 44.2 bits (105), Expect = 6e-06
 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 83  DIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAY 140
           D+P F VG  + V      +  K R   F G+ I +R  G+   F +R +   +G+E  +
Sbjct: 15  DLPDFRVGDTVRVHVKIV-EGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIF 73

Query: 141 DMYDPTIHNITVLRLEKRLDDDLLYLRD 168
            ++ P I +I V+R  K     L YLR+
Sbjct: 74  PLHSPNIDSIEVVRRGKVRRAKLYYLRE 101

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 113

>gnl|CDD|235418 PRK05338, rplS, 50S ribosomal protein L19; Provisional

 Score = 38.5 bits (91), Expect = 5e-04
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 11/78 (14%)

Query: 83  DIPSFFVGSILSVTSADKH----DPNKTR--KFVGICIQKRYCGLRHEFVLRNVVDNLGI 136
           DIP F  G  + V     H    + NK R   F G+ I +R  GL   F +R +   +G+
Sbjct: 15  DIPEFRPGDTVRV-----HVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGV 69

Query: 137 EIAYDMYDPTIHNITVLR 154
           E  + ++ P I +I V+R
Sbjct: 70  ERTFPLHSPRIDSIEVVR 87

Length = 116

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	291
CHL00084	117	rpl19 ribosomal protein L19	100.0
PRK05338	116	rplS 50S ribosomal protein L19; Provisional	100.0
TIGR01024	113	rplS_bact ribosomal protein L19, bacterial type. T	100.0
KOG1698|consensus	201		100.0
PF01245	113	Ribosomal_L19: Ribosomal protein L19; InterPro: IP	100.0
COG0335	115	RplS Ribosomal protein L19 [Translation, ribosomal	100.0
smart00743	61	Agenet Tudor-like domain present in plant sequence	80.89

>CHL00084 rpl19 ribosomal protein L19

Probab=100.00  E-value=1e-42  Score=289.43  Aligned_cols=113  Identities=22%  Similarity=0.390  Sum_probs=109.1

Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEe
Q psy12656         63 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD  141 (291)
Q Consensus        63 ~~~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~Fp  141 (291)
                      .++|++.+|.+++.     .++|+|+|||||+|++.+.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||
T Consensus         4 ~~~~i~~~~~~~~~-----~~~p~f~~GDtV~V~~~i~eg~k~R~q~F~GvvI~~r~~G~~~tftvRki~~gvGVEr~fp   78 (117)
T CHL00084          4 LQQLVKEIESEFLK-----KNLPKIRVGDTVKVGVLIQEGNKERVQFYEGTVIAKKNSGLNTTITVRKVFQGIGVERVFL   78 (117)
T ss_pred             HHHHHHHHHHHHhh-----cCCCccCCCCEEEEEEEEecCCeeEeceEEEEEEEEeCCCCCeeEEEEEeccCccEEEEEe
Confidence            56899999999997     69999999999999999999 8999999999999999999999999999999999999999


Q ss_pred             ecCCccceEEEeeecccccccccccccCCCCcccccCCC
Q psy12656        142 MYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDM  180 (291)
Q Consensus       142 LySP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik~~m  180 (291)
                      +|||.|++|||+++||+|||||||||++.||+|+|++.+
T Consensus        79 l~SP~I~~IeV~r~gkvRRAKLyYLR~~~gKaarike~~  117 (117)
T CHL00084         79 LHSPKLASIEVLRRSKVRRAKLYYLRNRVGKAARLKQKF  117 (117)
T ss_pred             cCCCccceEEEEEeCccchheeEEeccCcChhheeeccC
Confidence            999999999999999999999999999999999999853

>PRK05338 rplS 50S ribosomal protein L19; Provisional

Probab=100.00  E-value=1.6e-42  Score=287.93  Aligned_cols=113  Identities=24%  Similarity=0.413  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeec
Q psy12656         65 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY  143 (291)
Q Consensus        65 ~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLy  143 (291)
                      ++++.+|++++.     .++|+|++||||+|++.+.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++||||
T Consensus         2 ~~i~~~~~~~~~-----~~~p~f~~GD~V~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~   76 (116)
T PRK05338          2 NLIKEIEAEQLR-----KDIPEFRPGDTVRVHVKVVEGNKERIQAFEGVVIARRGRGLNETFTVRKISYGVGVERTFPLH   76 (116)
T ss_pred             cHHHHHHHHHhh-----cCCCCcCCCCEEEEEEEEccCCceEeccEEEEEEEEeCCCCCceEEEEEcccCccEEEEecCC
Confidence            588999999997     69999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeecccccccccccccCCCCcccccCCCCc
Q psy12656        144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEP  182 (291)
Q Consensus       144 SP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik~~m~p  182 (291)
                      ||.|++|||+++||+||||||||||+.||+|+|++...+
T Consensus        77 SP~I~~IeV~r~gkvRRAKLyYLR~~~gK~arike~~~~  115 (116)
T PRK05338         77 SPRIDSIEVVRRGKVRRAKLYYLRELRGKAARIKERRDA  115 (116)
T ss_pred             CCcccEEEEEEecccchhheeeeccCcchhheeeeeccC
Confidence            999999999999999999999999999999999997643

>TIGR01024 rplS_bact ribosomal protein L19, bacterial type

Probab=100.00  E-value=4.4e-42  Score=284.18  Aligned_cols=110  Identities=24%  Similarity=0.422  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeec
Q psy12656         65 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY  143 (291)
Q Consensus        65 ~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLy  143 (291)
                      ++++.+|++++.     .++|+|++||+|+|++.+.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++||+|
T Consensus         2 ~~i~~~e~~~~~-----~~ip~f~~GD~v~V~~~i~eg~k~R~q~f~GvvI~~~~~G~~~tftvR~i~~gvGVEr~fpl~   76 (113)
T TIGR01024         2 NLIKQIEQEQLK-----KDLPDFRVGDTVRVHVKIVEGKKERIQVFEGVVIARRGGGIGETFTVRKISYGVGVERIFPLH   76 (113)
T ss_pred             cHHHHHHHHHhh-----cCCCccCCCCEEEEEEEEccCCceEcccEEEEEEEEeCCCCceEEEEEEeccCccEEEEEEcC
Confidence            478999999987     69999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeecccccccccccccCCCCcccccCC
Q psy12656        144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFD  179 (291)
Q Consensus       144 SP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik~~  179 (291)
                      ||.|++|+|+++||+||||||||||+.||+|++++.
T Consensus        77 SP~I~~IeVl~~~kvrRaKLyYLR~~~gK~arike~  112 (113)
T TIGR01024        77 SPNIDSIEVVRRGKVRRAKLYYLRERRGKAARIKER  112 (113)
T ss_pred             CCccceEEEEEeCccchhheeeeccCcchhheeeec
Confidence            999999999999999999999999999999999974

This model describes bacterial ribosomoal protein L19 and its chloroplast equivalent. Putative mitochondrial L19 are found in several species (but not Saccharomyces cerevisiae) and score between trusted and noise cutoffs.

>KOG1698|consensus

Probab=100.00  E-value=1.3e-41  Score=303.09  Aligned_cols=146  Identities=45%  Similarity=0.748  Sum_probs=140.4

Q ss_pred             CCCccccccccCCChhhhhHHHHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcce
Q psy12656         44 PQENRFMYQEFLPDPELKFRNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRH  123 (291)
Q Consensus        44 p~~~r~~~pef~P~p~~~~~~~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~s  123 (291)
                      ++..++.||+|+|.+..  ...+++.||+++|+.++..+++|+|++||||+|++.+++++.+++.|.||||.+++.|+++
T Consensus        56 ~~~~~~~~~~f~~~~~~--~~~~~e~Ldr~a~~~rr~~r~iPe~~~G~Iv~V~s~~p~~k~k~s~f~Gi~I~R~~~Gl~a  133 (201)
T KOG1698|consen   56 SPCVVEQYPEFLPLRKV--AKRIMEILDRQAVLERRKVRDIPEFKVGSIVRVTSEDPENKRKVSRFKGICIRRRNAGLNA  133 (201)
T ss_pred             CccccccCcccccchhH--HHHHHHhhCHHHHHHHHhcccCCccccccEEEEEecCCccCCceeEEEEEEEEecccCCcc
Confidence            56688999999999955  4579999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeeCceeEEEEEeecCCccceEEEeeecccccccccccccCCCCcccccCCCCcccCCCCCCc
Q psy12656        124 EFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYLLDGAPV  191 (291)
Q Consensus       124 TFtLRnvi~gvGVEr~FpLySP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik~~m~p~~~~~~~~v  191 (291)
                      ||+|||+++|+|||.+||||||+|++|+|++..|++||+||||||+.+++++|+++|+|..+++|.+|
T Consensus       134 tf~LRnvIagvGVEi~~pLYsP~IkeI~Vlk~~k~rra~LyYLRd~lp~lstfd~~m~~~~~~~~~~~  201 (201)
T KOG1698|consen  134 TFLLRNVIAGVGVEIVFPLYSPNIKEIKVLKLEKRRRAKLYYLRDALPELSTFDANMRPKKEENGHKV  201 (201)
T ss_pred             eEEeeehhhCceeEEEEeccCCCeeEEEEechhhcccchhhhhhccccccCchhhccccccccCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999875

>PF01245 Ribosomal_L19: Ribosomal protein L19; InterPro: IPR001857 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5.8e-42  Score=283.07  Aligned_cols=111  Identities=32%  Similarity=0.525  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEee
Q psy12656         64 NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDM  142 (291)
Q Consensus        64 ~~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpL  142 (291)
                      ++|++.+|++++.     .++|+|++||+|+|++.+.| +++|+|.|+|+||+++++|+++||||||+++|+|||++|+|
T Consensus         1 ~~~i~~~e~~~~~-----~~~p~f~~GD~v~V~~~i~e~~k~r~q~f~GvvIa~~~~g~~ssftlR~~~~g~gVE~~f~l   75 (113)
T PF01245_consen    1 MNLIEEVEREQIK-----KDIPEFRVGDTVRVTYKISEGNKERIQVFEGVVIARRRRGLNSSFTLRNISQGVGVERVFPL   75 (113)
T ss_dssp             -HHHHHHHHTTCS-----SSSSSSSSSSEEEEEEEEESSSSEEEEEEEEEEEEEEBSSTSSEEEEEEEETTEEEEEEEET
T ss_pred             ChHHHHHHHHHhh-----cCCCCcCCCCEEEEEEEEecCCCceeEEEEEEEEEEECCCCCeeEEEEEEecCccEEEEEEc
Confidence            4789999999886     79999999999999999998 89999999999999999999999999999999999999999


Q ss_pred             cCCccceEEEeeecccccccccccccCCCCcccccCC
Q psy12656        143 YDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFD  179 (291)
Q Consensus       143 ySP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik~~  179 (291)
                      |||.|++|+|++++++||||||||||+.||+|+|++.
T Consensus        76 ~SP~I~~IeV~~~~kvrRaKLyYLR~~~gK~arike~  112 (113)
T PF01245_consen   76 YSPLIKSIEVLRRGKVRRAKLYYLRDRKGKAARIKEK  112 (113)
T ss_dssp             TSTTEEEEEEEEEBECSSSSTGGGGCTTSHHHHHHBT
T ss_pred             CCCCeEEEEEEEecccchhhhhhhhcCccchhhhccc
Confidence            9999999999999999999999999999999999875

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L19 is one of the proteins from the large ribosomal subunit [, ]. In Escherichia coli, L19 is known to be located at the 30S-50S ribosomal subunit interface [] and may play a role in the structure and function of the aminoacyl-tRNA binding site. It belongs to a family of ribosomal proteins, including L19 from bacteria and the chloroplasts of red algae. L19 is a protein of 120 to 130 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3HUZ_T 3V2D_T 3I8I_R 2XG2_T 2V49_T 2XUX_T 3HUX_T 3I9C_R 3V25_T 3UZ2_R ....

>COG0335 RplS Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.6e-41  Score=280.63  Aligned_cols=110  Identities=25%  Similarity=0.428  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeec
Q psy12656         65 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY  143 (291)
Q Consensus        65 ~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLy  143 (291)
                      .+++.||++|+.     .++|+|+|||+|+|++++.| +++|+|.|+|+||+++|+|+++|||||++++|+|||++||+|
T Consensus         4 ~~i~~le~~q~~-----~~iP~f~~GDtvrv~vki~Eg~keR~Q~FeGvVia~r~~G~~~tftvRkis~G~GVEr~Fp~~   78 (115)
T COG0335           4 PIIQQLEQEQIK-----KDIPSFRPGDTVRVHVKIVEGSKERVQAFEGVVIARRGRGISETFTVRKISYGVGVERVFPLH   78 (115)
T ss_pred             HHHHHHHHHHHH-----hhCCCCCCCCEEEEEEEEEeCCeEEEeeeeEEEEEECCCCccceEEEEEeecCceEEEEeecC
Confidence            589999999998     58999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeecccccccccccccCCCCcccccCC
Q psy12656        144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFD  179 (291)
Q Consensus       144 SP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik~~  179 (291)
                      ||.|++|||+++|+||||||||||++.||+++|++.
T Consensus        79 SP~Ie~IeV~rrGkVRRAKLYYLR~~~GKaArIke~  114 (115)
T COG0335          79 SPLIESIEVVRRGKVRRAKLYYLRERRGKAARIKEK  114 (115)
T ss_pred             CCceeEEEEEecCceeeeeeEeeecccccceeeeec
Confidence            999999999999999999999999999999999875

>smart00743 Agenet Tudor-like domain present in plant sequences

Probab=80.89  E-value=9.2  Score=27.44  Aligned_cols=49  Identities=12%  Similarity=0.190  Sum_probs=36.1

Q ss_pred             CcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEee
Q psy12656         86 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDM  142 (291)
Q Consensus        86 eF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpL  142 (291)
                      .|.+||.|.|....     .-.=|.|+|++..+   +..|.|+-.-.+.|-+..|+.
T Consensus         2 ~~~~G~~Ve~~~~~-----~~~W~~a~V~~~~~---~~~~~V~~~~~~~~~~e~v~~   50 (61)
T smart00743        2 DFKKGDRVEVFSKE-----EDSWWEAVVTKVLG---DGKYLVRYLTESEPLKETVDW   50 (61)
T ss_pred             CcCCCCEEEEEECC-----CCEEEEEEEEEECC---CCEEEEEECCCCcccEEEEeH
Confidence            68999999999854     24589999999877   445888765444666666653

Domain in plant sequences with possible chromatin-associated functions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	291
2ftc_K	98	Structural Model For The Large Subunit Of The Mamma		2e-16

>pdb|2FTC|K Chain K, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 98

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 57/98 (58%)
Query: 84  IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY 143
           IP F+VGSIL VT+AD +   K  +F+GICIQ+   GL   F+LRNV++  G+EI +++Y
Sbjct: 1   IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELY 60
Query: 144 DPTIHNITVXXXXXXXXXXXXXXXXXXPQYSTFPFDME 181
           +P +  I V                  P+YSTF  +M+
Sbjct: 61  NPRVQEIQVVKLEKRLDDSLLYLRDALPEYSTFDVNMK 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	291
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	8e-32
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	1e-07
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	8e-06
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	1e-05
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	7e-05

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} Length = 98

 Score =  112 bits (283), Expect = 8e-32
 Identities = 54/98 (55%), Positives = 74/98 (75%)

Query: 84  IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY 143
           IP F+VGSIL VT+AD +   K  +F+GICIQ+   GL   F+LRNV++  G+EI +++Y
Sbjct: 1   IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELY 60

Query: 144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDME 181
           +P +  I V++LEKRLDD LLYLRDALP+YSTF  +M+
Sbjct: 61  NPRVQEIQVVKLEKRLDDSLLYLRDALPEYSTFDVNMK 98

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 8e-10
 Identities = 41/305 (13%), Positives = 88/305 (28%), Gaps = 89/305 (29%)

Query: 5   ISRVHRSTRLNSLTILRNLSKNSPLQFENAENGEKKLSIPQENRFMYQEFLPDPELKFRN 64
           +   +    +  L +L+ L       + +  +    + +               + + R 
Sbjct: 189 LKNCNSPETV--LEMLQKLLYQIDPNWTSRSDHSSNIKLRIH----------SIQAELRR 236

Query: 65  QVREK-LERS----DMIKRRSVIDIPSFFVGS-ILSVTSADKHDPNKTRKFVGICIQKRY 118
            ++ K  E        ++     +  +F +   IL +T+  K                  
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWN--AFNLSCKIL-LTTRFK------------------ 275

Query: 119 CGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPF 178
                      V D L              +I++      L  D   ++  L +Y     
Sbjct: 276 ----------QVTDFLSAATTT--------HISLDHHSMTLTPD--EVKSLLLKYLDCRP 315

Query: 179 DMEPEYLLDGAPVPINDIKVKLKPRPWVGRWERKGYKGIDDVDQHITEKMKGQKKKLE-- 236
              P  +L   P  ++ I   ++       W+   +   D +   I       +  L   
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGL--ATWDNWKHVNCDKLTTII-------ESSLNVL 366

Query: 237 EPWEKYDLMKEYRR--------TIPE--------EEQEEIFSEVFSELHQLSLSNKKLKK 280
           EP E   +   + R         IP         +  +     V ++LH+ SL  K+ K+
Sbjct: 367 EPAEYRKM---FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 281 SRVYV 285
           S + +
Sbjct: 424 STISI 428

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 42/328 (12%), Positives = 90/328 (27%), Gaps = 99/328 (30%)

Query: 46  ENRFMYQEFLPDPELKFRNQVR----EKLERSDMIKRRSVIDI---PSFFVGSILSVTSA 98
           E+++ Y++ L   E  F +       + + +S ++ +  +  I        G++    + 
Sbjct: 13  EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS-ILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 99  DKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHN-------IT 151
                   +KFV   ++  Y  L              +   Y      ++N         
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 152 VLRLEK--RLDDDLLYLR--------------------DALPQYST---FPFDM------ 180
           V RL+   +L   LL LR                    D    Y       F +      
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 181 ---EPEYLLD---------------------GAPVPINDIKVKLKPRPWVGRWERKGYKG 216
               PE +L+                        + I+ I+ +L+        + K Y+ 
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-----RLLKSKPYEN 245

Query: 217 ----IDDV-DQHITEKMKGQKK------------KLEEPWEKYDLMKEYRRTIPEEEQEE 259
               + +V +           K             L      +  +  +  T+  +E + 
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 260 IFSEVFSELHQLSLSNKKLKKSRVYVKP 287
           +  +       L    + L +  +   P
Sbjct: 306 LLLKY------LDCRPQDLPREVLTTNP 327

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 233

 Score = 50.8 bits (121), Expect = 1e-07
 Identities = 29/151 (19%), Positives = 62/151 (41%)

Query: 18  TILRNLSKNSPLQFENAENGEKKLSIPQENRFMYQEFLPDPELKFRNQVREKLERSDMIK 77
            ++R+ +++S      +     +  +P E+    +E  P  +      +   L +  +  
Sbjct: 74  FVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMGILNKKAVHA 133

Query: 78  RRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIE 137
              +  +P    G I+ +      +  +   + GI I ++  G+     +R ++  +G+E
Sbjct: 134 AEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVE 193

Query: 138 IAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
           I + +Y P I  I V+   K     L YLRD
Sbjct: 194 IVFPLYSPNIKEIKVVSHRKVRKARLYYLRD 224

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q Length = 166

 Score = 44.0 bits (104), Expect = 8e-06
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 68  EKLERSDMIK---RRSVIDIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGLR 122
            K+ R ++++   +     +P F  G  + V +  + + N+TR   F G+ I     G R
Sbjct: 5   IKINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVR-EGNRTRSQAFEGVVIAINGSGSR 63

Query: 123 HEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
             F +R +    G+E  +    P ++ +T++   K     L YLR+
Sbjct: 64  KSFTVRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 109

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ... Length = 114

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 8/107 (7%)

Query: 64  NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCGL 121
           + + ++LE+  M +     D+PSF  G  + V      + +K R   F G+ I  R  GL
Sbjct: 1   SNIIKQLEQEQMKQ-----DVPSFRPGDTVEVKVWVV-EGSKKRLQAFEGVVIAIRNRGL 54

Query: 122 RHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
              F +R + +  G+E  +  + P + +I+V R        L YLR+
Sbjct: 55  HSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE 101

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ... Length = 146

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 8/108 (7%)

Query: 63  RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTR--KFVGICIQKRYCG 120
           R  + + +E   +       D+P F  G  + V+   K + N+TR   F GI I+ R  G
Sbjct: 3   RGALIKLVESRYVRT-----DLPEFRPGDTVRVSYKVK-EGNRTRIQDFEGIVIRIRRNG 56

Query: 121 LRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
               F +R V   +G+E  + ++ P I  I +++  +     L ++R+
Sbjct: 57  FNTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	291
3r8s_P	114	50S ribosomal protein L19; protein biosynthesis, R	100.0
2zjr_M	166	50S ribosomal protein L19; ribosome, large ribosom	100.0
2ftc_K	98	39S ribosomal protein L19, mitochondrial; mitochon	100.0
3v2d_T	146	50S ribosomal protein L19; ribosome associated inh	100.0
3bbo_R	233	Ribosomal protein L19; large ribosomal subunit, sp	100.0

>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...

Probab=100.00  E-value=8.2e-45  Score=299.57  Aligned_cols=111  Identities=24%  Similarity=0.408  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeec
Q psy12656         65 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY  143 (291)
Q Consensus        65 ~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLy  143 (291)
                      +||+.+|++||.     .|+|+|++||||+|++.+.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++||||
T Consensus         2 ~~i~~~e~~~~~-----~~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~   76 (114)
T 3r8s_P            2 NIIKQLEQEQMK-----QDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTH   76 (114)
T ss_dssp             CHHHHHHGGGCC-----SCCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred             hHHHHHHHHHhc-----cCCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEecC
Confidence            578999999996     69999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeecccccccccccccCCCCcccccCCC
Q psy12656        144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDM  180 (291)
Q Consensus       144 SP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik~~m  180 (291)
                      ||.|++|||+++||+||||||||||+.||+|+|++..
T Consensus        77 SP~I~~IeV~r~gkvRRAKLyYLR~~~GKaarike~~  113 (114)
T 3r8s_P           77 SPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL  113 (114)
T ss_dssp             CTTEEEEEEEECEECCSSCCGGGTTCCHHHHCCEECC
T ss_pred             CCccceEEEEEccccchhheeeecCCcchHHhhhhhh
Confidence            9999999999999999999999999999999999864

>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q

Probab=100.00  E-value=3.8e-44  Score=311.29  Aligned_cols=115  Identities=18%  Similarity=0.330  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeec
Q psy12656         65 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY  143 (291)
Q Consensus        65 ~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLy  143 (291)
                      +||+.||+++|+++ ...++|+|++||||+|++.+.| +++|+|.|+||||+++|+|+++||||||+++|+|||++||||
T Consensus         6 ~li~~le~eqlk~l-~~~diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~Fplh   84 (166)
T 2zjr_M            6 KINRGELLRGIEQD-HTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFPFA   84 (166)
T ss_dssp             CCCHHHHHHHTTGG-GCCCCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEETT
T ss_pred             HHHHHHHHHHHhhc-cccCCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeCCCCCcEEEEEEecCCeeEEEEEecC
Confidence            58999999999754 4579999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeecccccccccccccCCCCcccccCCC
Q psy12656        144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDM  180 (291)
Q Consensus       144 SP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik~~m  180 (291)
                      ||.|++|||+++|||||||||||||+.||+++|++..
T Consensus        85 SP~I~kIEVvrrGKVRRAKLYYLRd~~GKaARIke~~  121 (166)
T 2zjr_M           85 SPLVNQVTIVERGKVRRAKLYYLRELRGKAARIKSDR  121 (166)
T ss_dssp             CTTEEEEEEEECCCCSSSCCGGGCC------------
T ss_pred             CCccceEEEEeccccchhheeeccCCCCchhheehhh
Confidence            9999999999999999999999999999999999974

>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}

Probab=100.00  E-value=2e-43  Score=284.73  Aligned_cols=98  Identities=55%  Similarity=1.009  Sum_probs=96.8

Q ss_pred             CCCcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeecCCccceEEEeeecccccccc
Q psy12656         84 IPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDL  163 (291)
Q Consensus        84 iPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLySP~I~kIeVlr~gKvRRAKL  163 (291)
                      +|+|++||||+|++.+.++++|+|.|+|+||+++|+|+++||||||+++|+|||++||||||.|++|||+++||+|||||
T Consensus         1 iP~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~~G~~~tftvRki~~gvGVEr~fpl~SP~I~~IeV~r~gkvRRaKL   80 (98)
T 2ftc_K            1 IPEFYVGSILRVTTADPYASGKISQFLGICIQRSGRGLGATFILRNVIEGQGVEICFELYNPRVQEIQVVKLEKRLDDSL   80 (98)
T ss_pred             CCccCCCCEEEEEEEECCCceEeeeEEEEEEEEECCCCCcEEEEEEeccCceEEEEEecCCCceeEEEEEEcCcccceeE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcccccCCCC
Q psy12656        164 LYLRDALPQYSTFPFDME  181 (291)
Q Consensus       164 YYLRd~~gK~srik~~m~  181 (291)
                      |||||+++++|+|+++|+
T Consensus        81 yYLR~~~~~~st~~~~~~   98 (98)
T 2ftc_K           81 LYLRDALPEYSTFDVNMK   98 (98)
T ss_pred             EEeccCCcccceeccccC
Confidence            999999999999999996

>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...

Probab=100.00  E-value=2e-43  Score=301.34  Aligned_cols=114  Identities=22%  Similarity=0.391  Sum_probs=109.9

Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEe
Q psy12656         63 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD  141 (291)
Q Consensus        63 ~~~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~Fp  141 (291)
                      |++||+.+|.+++.     .|+|+|+|||||+|++.+.| +++|+|.|+||||+++|+|+++||||||+++|+|||++||
T Consensus         3 ~~~li~~ie~~~~~-----~diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~~Gl~~tFtVRkis~gvGVEr~Fp   77 (146)
T 3v2d_T            3 RGALIKLVESRYVR-----TDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFP   77 (146)
T ss_dssp             HHHHHHHHHHTTCC-----CCCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEECCGGGCEEEEEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHHhh-----ccCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEECCCCCeEEEEEEecCCccEEEEEe
Confidence            57899999999986     69999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             ecCCccceEEEeeecccccccccccccCCCCccc--ccCCCC
Q psy12656        142 MYDPTIHNITVLRLEKRLDDDLLYLRDALPQYST--FPFDME  181 (291)
Q Consensus       142 LySP~I~kIeVlr~gKvRRAKLYYLRd~~gK~sr--ik~~m~  181 (291)
                      ||||.|++|||+++|||||||||||||+.||+++  |++..+
T Consensus        78 l~SP~I~~IeVvrrgkVRRAKLYYLR~~~GKaar~~ike~~~  119 (146)
T 3v2d_T           78 LHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRK  119 (146)
T ss_dssp             TTCTTEEEEEEEECEECSSSCCGGGGGCCHHHHHHHSEECHH
T ss_pred             cCCCccceEEEEecCccchhheeeccCCcchhHHHHHHHHHH
Confidence            9999999999999999999999999999999999  998653

>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=7.6e-41  Score=302.22  Aligned_cols=114  Identities=25%  Similarity=0.510  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeec
Q psy12656         64 NQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY  143 (291)
Q Consensus        64 ~~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLy  143 (291)
                      ..+|+.|+++++.+....+++|+|++||||+|++.+.|+|+|+|.|+||||+++|+|+++||||||+++|+|||++|+||
T Consensus       120 ~~iM~~L~re~ie~~q~kkdiPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~~Gl~sTFTVRkis~GvGVER~FpLh  199 (233)
T 3bbo_R          120 GDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLY  199 (233)
T ss_dssp             -CCSSSCSTTHHHHTTCCSCCSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCBCCCSSSCBCBCCCCCSTTTCCCCCB
T ss_pred             HHHHHHHHHHHHHHHhhccCCCccCCCCEEEEEEEeccCcceecceEEEEEEEeCCCCCceEEEEEecCCceEEEEEecC
Confidence            35676666666665555579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeecccccccccccccCCCCccccc
Q psy12656        144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFP  177 (291)
Q Consensus       144 SP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik  177 (291)
                      ||.|++|||+++|||||||||||||+.+++|||+
T Consensus       200 SP~I~kIEVvRrgKVRRAKLYYLRd~lp~~STf~  233 (233)
T 3bbo_R          200 SPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK  233 (233)
T ss_dssp             SSSSSCCCCCCCSCCCCSCSSCCCCSSTTCSSCC
T ss_pred             CCccceEEEEeccccchhhhhhhhcCCcccccCC
Confidence            9999999999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	291
d2zjrm1	108	b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococ	9e-17
d2j01t1	138	b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus	5e-15
d2gycn1	114	b.34.5.6 (N:1-114) Ribosomal protein L19 {Escheric	6e-13

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]} Length = 108

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 72.1 bits (177), Expect = 9e-17
 Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 4/104 (3%)

Query: 69  KLERSDMIK---RRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHE 124
           K+ R ++++   +     +P F  G  + V +  +  +  +++ F G+ I     G R  
Sbjct: 5   KINRGELLRGIEQDHTRQLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKS 64

Query: 125 FVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
           F +R +    G+E  +    P ++ +T++   K     L YLR+
Sbjct: 65  FTVRKISFGEGVERVFPFASPLVNQVTIVERGKVRRAKLYYLRE 108

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]} Length = 138

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

 Score = 68.5 bits (167), Expect = 5e-15
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 63  RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKHDPN-KTRKFVGICIQKRYCGL 121
           R  + + +E   +       D+P F  G  + V+   K     + + F GI I+ R  G 
Sbjct: 3   RGALIKLVESRYVRT-----DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGF 57

Query: 122 RHEFVLRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
              F +R V   +G+E  + ++ P I  I +++  +     L ++R+
Sbjct: 58  NTTFTVRKVSYGVGVERIFPLHSPLIQKIDIVQRGRARRAKLYFIRN 104

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]} Length = 114

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

 Score = 62.1 bits (151), Expect = 6e-13
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 68  EKLERSDMIKRRSVIDIPSFFVGSILSV-TSADKHDPNKTRKFVGICIQKRYCGLRHEFV 126
           ++LE+  M +     D+PSF  G  + V     +    + + F G+ I  R  GL   F 
Sbjct: 5   KQLEQEQMKQ-----DVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFT 59

Query: 127 LRNVVDNLGIEIAYDMYDPTIHNITVLRLEKRLDDDLLYLRD 168
           +R + +  G+E  +  + P + +I+V R        L YLR+
Sbjct: 60  VRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	291
d2j01t1	138	Ribosomal protein L19 {Thermus thermophilus [TaxId	100.0
d2gycn1	114	Ribosomal protein L19 {Escherichia coli [TaxId: 56	100.0
d2zjrm1	108	Ribosomal protein L19 {Deinococcus radiodurans [Ta	100.0
d1zq1a1	74	Glutamyl-tRNA(Gln) amidotransferase subunit D, Gat	83.39

>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.2e-43  Score=293.71  Aligned_cols=118  Identities=20%  Similarity=0.373  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEe
Q psy12656         63 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD  141 (291)
Q Consensus        63 ~~~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~Fp  141 (291)
                      .+.|++.+|+++++     .++|+|++||||+|++.+.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++||
T Consensus         3 ~~~Li~~iE~~~~k-----~~iP~fr~GDtV~V~~~i~Eg~k~RiQ~f~GvvI~~~~~g~~~tftvRki~~gvGVEr~fp   77 (138)
T d2j01t1           3 RGALIKLVESRYVR-----TDLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRRNGFNTTFTVRKVSYGVGVERIFP   77 (138)
T ss_dssp             THHHHHHHHCCCCC-----SCSCCCCSSCBBCCCCCCBTTBSCCCCCCBCEEEEEECCSSSCEEEEEEEETTEEEEEEEC
T ss_pred             HHHHHHHHHHHhhc-----ccCCCcCCCCEEEEEEEEcCCCceEEEEEEEEEEEEeCCCcceEEEEEEEecCccEEEEEe
Confidence            35899999998886     69999999999999999999 9999999999999999999999999999999999999999


Q ss_pred             ecCCccceEEEeeecccccccccccccCCCCcccccCCCCcccC
Q psy12656        142 MYDPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDMEPEYL  185 (291)
Q Consensus       142 LySP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik~~m~p~~~  185 (291)
                      ||||+|++|||+++|||||||||||||+.||+++|++.+.....
T Consensus        78 l~SP~I~~IeVvr~gkvRRAKLyYLR~~~gk~arike~~~~~~~  121 (138)
T d2j01t1          78 LHSPLIQKIDIVQRGRARRAKLYFIRNLSDREIRRKLRADRKRI  121 (138)
T ss_dssp             SSSSCSCCCBCCCCBCCSSSSCGGGSSSCSSSHHHHSBCCHHHH
T ss_pred             ccCCCccceEEeecCceehhheeehhhccchhhhhhhhhccccc
Confidence            99999999999999999999999999999999999998876533

>d2gycn1 b.34.5.6 (N:1-114) Ribosomal protein L19 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-44  Score=296.48  Aligned_cols=111  Identities=24%  Similarity=0.408  Sum_probs=107.0

Q ss_pred             HHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEeec
Q psy12656         65 QVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYDMY  143 (291)
Q Consensus        65 ~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~FpLy  143 (291)
                      +||+.+|++|++     .++|+|++||+|+|++.+.| +++|+|.|+|+||+++|+|+++||||||+++|+|||++||||
T Consensus         2 nli~~ie~~q~k-----~~iP~f~~GDtV~V~~~i~eg~K~RiQ~feGvvIa~k~~G~~~tftvRki~~GvGVEr~fpl~   76 (114)
T d2gycn1           2 NIIKQLEQEQMK-----QDVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTH   76 (114)
T ss_dssp             CTTTSSSSSTTC-----CCCCCSCCCTTCCCCCCCCCCSSSSCCCCCCCCCCSCBCCCSSSCCCBCCCCCSSSCCCCCCC
T ss_pred             hHHHHHHHHHhh-----ccCCCcCCCCEEEEEEEEccCCcceeeEEEEEEEEEeCCCcceEEEEEEecCCccEEEEEEeC
Confidence            567888999887     69999999999999999999 999999999999999999999999999999999999999999


Q ss_pred             CCccceEEEeeecccccccccccccCCCCcccccCCC
Q psy12656        144 DPTIHNITVLRLEKRLDDDLLYLRDALPQYSTFPFDM  180 (291)
Q Consensus       144 SP~I~kIeVlr~gKvRRAKLYYLRd~~gK~srik~~m  180 (291)
                      ||+|++|||+++|||||||||||||+.||+|++++.+
T Consensus        77 SP~I~~IeV~~~~kvRRaKLyYLR~~~gk~arike~~  113 (114)
T d2gycn1          77 SPVVDSISVKRRGAVRKAKLYYLRERTGKAARIKERL  113 (114)
T ss_dssp             SSCTTCCCCCCCSCCCCSCTTCCCCSSSCCCTTTTTC
T ss_pred             CCCcceeEEeccCceehhheeeeccCcchHHhhhhhc
Confidence            9999999999999999999999999999999999875

>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: Ribosomal protein L19
domain: Ribosomal protein L19
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=3e-41  Score=274.25  Aligned_cols=100  Identities=22%  Similarity=0.448  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHhhhhccCCCCCCcCCCCEEEEEeeecC-CCCccccEEEEEEEEecCCcceeEEEEeeeCceeEEEEEe
Q psy12656         63 RNQVREKLERSDMIKRRSVIDIPSFFVGSILSVTSADKH-DPNKTRKFVGICIQKRYCGLRHEFVLRNVVDNLGIEIAYD  141 (291)
Q Consensus        63 ~~~Li~~LE~e~m~~rr~~~diPeF~vGDiV~Vt~~i~e-~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~gvGVEr~Fp  141 (291)
                      +++||+.+|+++++      ++|+|+|||+|+|++.+.| +|+|+|.|+|+||+++|+|+++||||||+++|+|||++||
T Consensus         8 ~~~li~~ie~~~~k------~iP~f~~GDtV~V~~~i~Eg~k~RiQ~FeGvvI~~~~~g~~~tftvRki~~g~GVEr~fp   81 (108)
T d2zjrm1           8 RGELLRGIEQDHTR------QLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAINGSGSRKSFTVRKISFGEGVERVFP   81 (108)
T ss_dssp             HHHHHHHTTGGGCC------CCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCCCGGGCEEEEEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHhCc------CCCCcCCCCEEEEEEEEcCCCccceEEEEEEEEEEeCCCccceEEEEEEecCccEEEEEE
Confidence            56899999987654      7999999999999999999 8999999999999999999999999999999999999999


Q ss_pred             ecCCccceEEEeeeccccccccccccc
Q psy12656        142 MYDPTIHNITVLRLEKRLDDDLLYLRD  168 (291)
Q Consensus       142 LySP~I~kIeVlr~gKvRRAKLYYLRd  168 (291)
                      ||||.|++|||+++||+||||||||||
T Consensus        82 l~SP~i~~IeV~r~~kvRRakLyYLRd  108 (108)
T d2zjrm1          82 FASPLVNQVTIVERGKVRRAKLYYLRE  108 (108)
T ss_dssp             TTCTTEEEEEEEECCCCSSSCCGGGCC
T ss_pred             cCCCCccEEEEEEecceeeeeeeeecC
Confidence            999999999999999999999999997

>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Sm-like fold
superfamily: GatD N-terminal domain-like
family: GatD N-terminal domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD
species: Pyrococcus abyssi [TaxId: 29292]

Probab=83.39  E-value=0.95  Score=32.76  Aligned_cols=63  Identities=22%  Similarity=0.327  Sum_probs=41.4

Q ss_pred             CcCCCCEEEEEeeecCCCCccccEEEEEEEEecCCcceeEEEEeeeC--ceeEEEEEeecCCccceEEEeeeccc
Q psy12656         86 SFFVGSILSVTSADKHDPNKTRKFVGICIQKRYCGLRHEFVLRNVVD--NLGIEIAYDMYDPTIHNITVLRLEKR  158 (291)
Q Consensus        86 eF~vGDiV~Vt~~i~e~K~R~q~F~GivIarr~~Gl~sTFtLRnvi~--gvGVEr~FpLySP~I~kIeVlr~gKv  158 (291)
                      .+.+||.|+|+.....   --..|+|+++-.-..+-...++| +.-+  ++|+.      -=.|++|||+..+++
T Consensus        10 ~~~~GD~Vri~~~~~~---~~~~~eGilmP~~e~s~~~~ivl-KL~nGYNiGi~------~~~i~~ievlek~kv   74 (74)
T d1zq1a1          10 NINVGDFVRITKEEDG---EEVTYEGYIMPPYELSAGDTLVL-KLENGYNIGIA------LEKIRRIEVLERAKV   74 (74)
T ss_dssp             TCCTTCEEEEEEESSS---SEEECCEEECCCCTTCCCSEEEE-EETTSCEEEEE------GGGEEEEEEEECCCC
T ss_pred             CCCCCCEEEEEEecCC---CceEEEEEEcCCcccCCCCEEEE-EecCceeeccc------hhHeeEEEEEeeccC
Confidence            5789999999875431   12479999998754333444555 3344  34443      246889999988764