Psyllid ID: psy12678

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MGGVGTPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCVDTAL
Secondary Structure (PSIPRED)
ccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEEEEccEEEEEEEEEEEcccHHHHHHHHHccccccEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEccccHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHEEHcccHHHHHHHHHcccccccEcccc
Coil and Loop (DISEMBL)
mggvgtpvdqqFALRWNDFQTSILSSFrhlrdeedfvdvtlacdgcsftahKVVLSACSPYFKTLLKSIDGRRLCVDTAL
Flexible Loop (DISEMBL)
MGGVGTPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTllksidgrRLCVDTAL
Low Complexity Region (SEG)
MGGVGTPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCVDTAL
Disordered region (IsUnstruct)
*********QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCV****
Disordered Region (DISOPRED)
*************LRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCVDTAL
Disordered Region (DISEMBL)
MGGVGTPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCVDTAL
Disordered Region (DISPRO)
*******VDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG***C*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGGVGTPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCVDTAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
Q24174	904	Protein abrupt OS=Drosoph	yes	N/A	0.712	0.063	0.859	2e-24
Q7KRI2	127	Longitudinals lacking pro	no	N/A	0.737	0.464	0.711	3e-20
Q24206	880	Broad-complex core protei	no	N/A	0.737	0.067	0.694	1e-19
Q01295	727	Broad-complex core protei	no	N/A	0.737	0.081	0.694	1e-19
Q9W0K7	977	Protein bric-a-brac 1 OS=	no	N/A	0.712	0.058	0.666	8e-17
Q9W0K4	1067	Protein bric-a-brac 2 OS=	no	N/A	0.712	0.053	0.578	7e-15
Q867Z4	970	Longitudinals lacking pro	no	N/A	0.737	0.060	0.593	2e-14
P42283	891	Longitudinals lacking pro	no	N/A	0.737	0.066	0.593	2e-14
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.737	0.074	0.593	3e-14
Q9V5M6	963	Longitudinals lacking pro	no	N/A	0.737	0.061	0.593	3e-14

>sp|Q24174|ABRU_DROME Protein abrupt OS=Drosophila melanogaster GN=ab PE=1 SV=2

 Score =  111 bits (277), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/57 (85%), Positives = 54/57 (94%)

Query: 12  FALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
           +AL+WNDFQ+SILSSFRHLRDEEDFVDVTLACD  SFTAHKVVLSACSPYF+ LLK+
Sbjct: 78  YALKWNDFQSSILSSFRHLRDEEDFVDVTLACDERSFTAHKVVLSACSPYFRRLLKA 134

Expression is vital for development; may be involved in transcriptional regulation. In embryos, muscle specific expression is required for segmental nerve b (SNb) motoneuron target recognition within ventral longitudinal muscles. Has a role in establishing and maintaining embryonic muscle attachments, adult sensory cell formation (macrochaetae) and morphogenesis of adult appendages (legs, antenna aristae and male external genitalia). Has a role in the morphogenesis of the class I dendritic neurons: selective expression of ab in class I da neurons plays a pivotal role in forming dendritic arbors, which are characteristic of the class I cells. The development of more complex arbors of class II-IV neurons depends on the absence of ab.
Drosophila melanogaster (taxid: 7227)

>sp|Q7KRI2|LOLAL_DROME Longitudinals lacking protein-like OS=Drosophila melanogaster GN=lolal PE=1 SV=1

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/59 (71%), Positives = 52/59 (88%)

Query: 9  DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLK 67
          DQQF L+WNDFQT++++SFRHLRDE+ F DVTLAC+G +  AHK+VLSACSPYFK LL+
Sbjct: 5  DQQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLACEGQTCKAHKMVLSACSPYFKALLE 63

Required, together with Trl, for maintaining the repressed state of target genes including homeotic genes Scr and Ubx. May also be involved in the activation of homeotic genes. Binds to a DNA Polycomb response element (PRE) at the bithorax complex. Also binds to polytene chromosomes at several hundred sites, many of which are shared with Trl and ph-p. Required during embryonic development.

Drosophila melanogaster (taxid: 7227)

>sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6 OS=Drosophila melanogaster GN=br PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query: 10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          Q F LRWN++Q+SI S+F +LRD+E FVDVTLAC+G S  AH+VVLSACSPYF+ LLKS
Sbjct: 5  QHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKS 63

Broad-complex proteins are required for puffing and transcription of salivary gland late genes during metamorphosis.

Drosophila melanogaster (taxid: 7227)

>sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4/5 OS=Drosophila melanogaster GN=br PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query: 10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          Q F LRWN++Q+SI S+F +LRD+E FVDVTLAC+G S  AH+VVLSACSPYF+ LLKS
Sbjct: 5  QHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKS 63

Broad-complex proteins are required for puffing and transcription of salivary gland late genes during metamorphosis.

Drosophila melanogaster (taxid: 7227)

>sp|Q9W0K7|BAB1_DROME Protein bric-a-brac 1 OS=Drosophila melanogaster GN=bab1 PE=2 SV=2

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 38/57 (66%), Positives = 45/57 (78%)

Query: 10  QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLL 66
           QQF LRWN++QT++ + F  L   E FVDVTLACDG S  AHK+VLSACSPYF+TLL
Sbjct: 100 QQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQTLL 156

Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.

Drosophila melanogaster (taxid: 7227)

>sp|Q9W0K4|BAB2_DROME Protein bric-a-brac 2 OS=Drosophila melanogaster GN=bab2 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 10  QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLL 66
           QQF LRWN++Q+++ + F  L   E FVDVTL+C+G S  AHK+VLSACSPYF+ L 
Sbjct: 196 QQFCLRWNNYQSNLTNVFDELLQSESFVDVTLSCEGHSIKAHKMVLSACSPYFQALF 252

Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.

Drosophila melanogaster (taxid: 7227)

>sp|Q867Z4|LOLA4_DROME Longitudinals lacking protein, isoforms F/I/K/T OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 43/59 (72%)

Query: 9  DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLK 67
          DQQF LRWN+ Q++++S F  L + E  VD TLA +G    AHKVVLSACSPYF TLL+
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQ 62

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|P42283|LOLA1_DROME Longitudinals lacking protein, isoform G OS=Drosophila melanogaster GN=lola PE=1 SV=2

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 43/59 (72%)

Query: 9  DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLK 67
          DQQF LRWN+ Q++++S F  L + E  VD TLA +G    AHKVVLSACSPYF TLL+
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQ 62

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 43/59 (72%)

Query: 9  DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLK 67
          DQQF LRWN+ Q++++S F  L + E  VD TLA +G    AHKVVLSACSPYF TLL+
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQ 62

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

>sp|Q9V5M6|LOLA5_DROME Longitudinals lacking protein, isoforms J/P/Q/S/Z OS=Drosophila melanogaster GN=lola PE=1 SV=4

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 43/59 (72%)

Query: 9  DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLK 67
          DQQF LRWN+ Q++++S F  L + E  VD TLA +G    AHKVVLSACSPYF TLL+
Sbjct: 4  DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQ 62

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
189237853	634	PREDICTED: similar to abrupt CG4807-PA [	0.837	0.105	0.823	4e-27
270006730	383	hypothetical protein TcasGA2_TC013098 [T	0.837	0.174	0.823	4e-27
312375828	579	hypothetical protein AND_13530 [Anophele	0.837	0.115	0.808	5e-26
242007684	704	protein abrupt, putative [Pediculus huma	0.775	0.088	0.838	5e-25
383855312	528	PREDICTED: uncharacterized protein LOC10	0.75	0.113	0.833	2e-24
380017435	622	PREDICTED: protein abrupt-like [Apis flo	0.75	0.096	0.833	2e-24
350426986	550	PREDICTED: hypothetical protein LOC10074	0.75	0.109	0.833	2e-24
345490994	525	PREDICTED: hypothetical protein LOC10011	0.75	0.114	0.833	2e-24
340723469	622	PREDICTED: protein abrupt-like [Bombus t	0.75	0.096	0.833	2e-24
328779637	550	PREDICTED: hypothetical protein LOC72654	0.75	0.109	0.833	2e-24

>gi|189237853|ref|XP_974947.2| PREDICTED: similar to abrupt CG4807-PA [Tribolium castaneum]

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/68 (82%), Positives = 63/68 (92%), Gaps = 1/68 (1%)

Query: 1  MGGVGTPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSP 60
          MGG  +P +QQ++LRWNDF +SILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSP
Sbjct: 1  MGGDTSP-EQQYSLRWNDFHSSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSP 59

Query: 61 YFKTLLKS 68
          YF+ LLK+
Sbjct: 60 YFRRLLKA 67

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006730|gb|EFA03178.1| hypothetical protein TcasGA2_TC013098 [Tribolium castaneum]

 Score =  125 bits (313), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/68 (82%), Positives = 63/68 (92%), Gaps = 1/68 (1%)

Query: 1  MGGVGTPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSP 60
          MGG  +P +QQ++LRWNDF +SILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSP
Sbjct: 1  MGGDTSP-EQQYSLRWNDFHSSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSP 59

Query: 61 YFKTLLKS 68
          YF+ LLK+
Sbjct: 60 YFRRLLKA 67

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375828|gb|EFR23109.1| hypothetical protein AND_13530 [Anopheles darlingi]

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/68 (80%), Positives = 62/68 (91%), Gaps = 1/68 (1%)

Query: 2   GGVG-TPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSP 60
           GGV  TP +QQ+AL+WNDFQ+SILSSFRHLRDEEDFVDVT+ACD  SFTAHKVVLSACSP
Sbjct: 131 GGVSPTPSEQQYALKWNDFQSSILSSFRHLRDEEDFVDVTIACDTRSFTAHKVVLSACSP 190

Query: 61  YFKTLLKS 68
           YF+ LLK+
Sbjct: 191 YFRKLLKA 198

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007684|ref|XP_002424658.1| protein abrupt, putative [Pediculus humanus corporis] gi|212508151|gb|EEB11920.1| protein abrupt, putative [Pediculus humanus corporis]

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/62 (83%), Positives = 58/62 (93%)

Query: 7   PVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLL 66
           P +QQ++LRWNDF TSILSSFRHLR+EEDFVDVTLACDG SFTAHKVVLSACSPYF+ LL
Sbjct: 105 PSEQQYSLRWNDFHTSILSSFRHLREEEDFVDVTLACDGRSFTAHKVVLSACSPYFRRLL 164

Query: 67  KS 68
           K+
Sbjct: 165 KA 166

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855312|ref|XP_003703158.1| PREDICTED: uncharacterized protein LOC100875453 [Megachile rotundata]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/60 (83%), Positives = 56/60 (93%)

Query: 9  DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          +QQ++LRWNDF +SILSSFRHLRDEEDFVDVTLACD  SFTAHKVVLSACSPYF+ LLK+
Sbjct: 11 EQQYSLRWNDFHSSILSSFRHLRDEEDFVDVTLACDSSSFTAHKVVLSACSPYFRRLLKA 70

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017435|ref|XP_003692661.1| PREDICTED: protein abrupt-like [Apis florea]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/60 (83%), Positives = 56/60 (93%)

Query: 9  DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          +QQ++LRWNDF +SILSSFRHLRDEEDFVDVTLACD  SFTAHKVVLSACSPYF+ LLK+
Sbjct: 11 EQQYSLRWNDFHSSILSSFRHLRDEEDFVDVTLACDSSSFTAHKVVLSACSPYFRRLLKA 70

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350426986|ref|XP_003494609.1| PREDICTED: hypothetical protein LOC100740805 [Bombus impatiens]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/60 (83%), Positives = 56/60 (93%)

Query: 9  DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          +QQ++LRWNDF +SILSSFRHLRDEEDFVDVTLACD  SFTAHKVVLSACSPYF+ LLK+
Sbjct: 11 EQQYSLRWNDFHSSILSSFRHLRDEEDFVDVTLACDSSSFTAHKVVLSACSPYFRRLLKA 70

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345490994|ref|XP_001601763.2| PREDICTED: hypothetical protein LOC100117563 [Nasonia vitripennis]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/60 (83%), Positives = 56/60 (93%)

Query: 9  DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          +QQ++LRWNDF +SILSSFRHLRDEEDFVDVTLACD  SFTAHKVVLSACSPYF+ LLK+
Sbjct: 11 EQQYSLRWNDFHSSILSSFRHLRDEEDFVDVTLACDSSSFTAHKVVLSACSPYFRRLLKA 70

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340723469|ref|XP_003400112.1| PREDICTED: protein abrupt-like [Bombus terrestris]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/60 (83%), Positives = 56/60 (93%)

Query: 9  DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          +QQ++LRWNDF +SILSSFRHLRDEEDFVDVTLACD  SFTAHKVVLSACSPYF+ LLK+
Sbjct: 11 EQQYSLRWNDFHSSILSSFRHLRDEEDFVDVTLACDSSSFTAHKVVLSACSPYFRRLLKA 70

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779637|ref|XP_001122274.2| PREDICTED: hypothetical protein LOC726547 [Apis mellifera]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/60 (83%), Positives = 56/60 (93%)

Query: 9  DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          +QQ++LRWNDF +SILSSFRHLRDEEDFVDVTLACD  SFTAHKVVLSACSPYF+ LLK+
Sbjct: 11 EQQYSLRWNDFHSSILSSFRHLRDEEDFVDVTLACDSSSFTAHKVVLSACSPYFRRLLKA 70

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
FB|FBgn0264442	904	ab "abrupt" [Drosophila melano	0.737	0.065	0.847	7.8e-22
FB|FBgn0022238	127	lolal "lola like" [Drosophila	0.737	0.464	0.711	9.2e-20
FB|FBgn0000210	880	br "broad" [Drosophila melanog	0.737	0.067	0.694	4.9e-17
FB|FBgn0004870	977	bab1 "bric a brac 1" [Drosophi	0.712	0.058	0.666	1e-14
FB|FBgn0025525	1067	bab2 "bric a brac 2" [Drosophi	0.7	0.052	0.589	7.3e-13
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.737	0.060	0.593	2.2e-12
FB|FBgn0263102	1085	psq "pipsqueak" [Drosophila me	0.712	0.052	0.578	5.4e-12
FB|FBgn0003870	813	ttk "tramtrack" [Drosophila me	0.737	0.072	0.576	1.2e-11
FB|FBgn0004652	955	fru "fruitless" [Drosophila me	0.725	0.060	0.5	2.3e-10
FB|FBgn0264981	1089	mamo "maternal gene required f	0.837	0.061	0.449	5.7e-10

FB|FBgn0264442 ab "abrupt" [Drosophila melanogaster (taxid:7227)]

 Score = 266 (98.7 bits), Expect = 7.8e-22, P = 7.8e-22
 Identities = 50/59 (84%), Positives = 55/59 (93%)

Query:    10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
             Q +AL+WNDFQ+SILSSFRHLRDEEDFVDVTLACD  SFTAHKVVLSACSPYF+ LLK+
Sbjct:    76 QHYALKWNDFQSSILSSFRHLRDEEDFVDVTLACDERSFTAHKVVLSACSPYFRRLLKA 134

GO:0016203 "muscle attachment" evidence=IMP

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0007423 "sensory organ development" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0016198 "axon choice point recognition" evidence=TAS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

FB|FBgn0022238 lolal "lola like" [Drosophila melanogaster (taxid:7227)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 42/59 (71%), Positives = 52/59 (88%)

Query:     9 DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLK 67
             DQQF L+WNDFQT++++SFRHLRDE+ F DVTLAC+G +  AHK+VLSACSPYFK LL+
Sbjct:     5 DQQFFLKWNDFQTNMVTSFRHLRDEKSFTDVTLACEGQTCKAHKMVLSACSPYFKALLE 63

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006342 "chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0031519 "PcG protein complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

FB|FBgn0000210 br "broad" [Drosophila melanogaster (taxid:7227)]

 Score = 221 (82.9 bits), Expect = 4.9e-17, P = 4.9e-17
 Identities = 41/59 (69%), Positives = 50/59 (84%)

Query:    10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
             Q F LRWN++Q+SI S+F +LRD+E FVDVTLAC+G S  AH+VVLSACSPYF+ LLKS
Sbjct:     5 QHFCLRWNNYQSSITSAFENLRDDEAFVDVTLACEGRSIKAHRVVLSACSPYFRELLKS 63

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0007458 "progression of morphogenetic furrow involved in compound eye morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0007552 "metamorphosis" evidence=NAS;TAS

GO:0035071 "salivary gland cell autophagic cell death" evidence=NAS

GO:0035070 "salivary gland histolysis" evidence=NAS;IMP

GO:0001752 "compound eye photoreceptor fate commitment" evidence=IMP

GO:0035072 "ecdysone-mediated induction of salivary gland cell autophagic cell death" evidence=NAS

GO:0006914 "autophagy" evidence=IMP

GO:0008219 "cell death" evidence=TAS

GO:0040034 "regulation of development, heterochronic" evidence=IMP;TAS

GO:0009608 "response to symbiont" evidence=IMP

GO:0035075 "response to ecdysone" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0007562 "eclosion" evidence=IEP

GO:0071390 "cellular response to ecdysone" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048747 "muscle fiber development" evidence=IGI

GO:0048477 "oogenesis" evidence=IMP

GO:0048808 "male genitalia morphogenesis" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)]

 Score = 200 (75.5 bits), Expect = 1.0e-14, P = 1.0e-14
 Identities = 38/57 (66%), Positives = 45/57 (78%)

Query:    10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLL 66
             QQF LRWN++QT++ + F  L   E FVDVTLACDG S  AHK+VLSACSPYF+TLL
Sbjct:   100 QQFCLRWNNYQTNLTTIFDQLLQNECFVDVTLACDGRSMKAHKMVLSACSPYFQTLL 156

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEP;ISS

GO:0007548 "sex differentiation" evidence=IGI;IMP;TAS

GO:0048071 "sex-specific pigmentation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048092 "negative regulation of male pigmentation" evidence=NAS

GO:0046660 "female sex differentiation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IEP

GO:0003677 "DNA binding" evidence=NAS

GO:0048070 "regulation of developmental pigmentation" evidence=TAS

GO:0048086 "negative regulation of developmental pigmentation" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003680 "AT DNA binding" evidence=IDA

FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 7.3e-13, P = 7.3e-13
 Identities = 33/56 (58%), Positives = 43/56 (76%)

Query:    10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
             QQF LRWN++Q+++ + F  L   E FVDVTL+C+G S  AHK+VLSACSPYF+ L
Sbjct:   196 QQFCLRWNNYQSNLTNVFDELLQSESFVDVTLSCEGHSIKAHKMVLSACSPYFQAL 251

GO:0005515 "protein binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IEP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0007455 "eye-antennal disc morphogenesis" evidence=ISS

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0003677 "DNA binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005701 "polytene chromosome chromocenter" evidence=IDA

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 178 (67.7 bits), Expect = 2.2e-12, P = 2.2e-12
 Identities = 35/59 (59%), Positives = 43/59 (72%)

Query:     9 DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLK 67
             DQQF LRWN+ Q++++S F  L + E  VD TLA +G    AHKVVLSACSPYF TLL+
Sbjct:     4 DQQFCLRWNNHQSTLISVFDTLLENETLVDCTLAAEGKFLKAHKVVLSACSPYFATLLQ 62

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0263102 psq "pipsqueak" [Drosophila melanogaster (taxid:7227)]

 Score = 175 (66.7 bits), Expect = 5.4e-12, P = 5.4e-12
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query:    10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLL 66
             Q F+LRWN++Q ++ S F+ LR++  FVDVTL+C+  S  AHKVVLSACS YF+ LL
Sbjct:     8 QYFSLRWNNYQNTMTSVFQQLREDLSFVDVTLSCEHGSLKAHKVVLSACSTYFQKLL 64

GO:0007315 "pole plasm assembly" evidence=NAS

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0003677 "DNA binding" evidence=NAS;TAS

GO:0006342 "chromatin silencing" evidence=IMP

GO:0031519 "PcG protein complex" evidence=IDA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0016458 "gene silencing" evidence=TAS

GO:0008595 "anterior/posterior axis specification, embryo" evidence=IMP

GO:0042048 "olfactory behavior" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0031935 "regulation of chromatin silencing" evidence=IMP

GO:0009880 "embryonic pattern specification" evidence=IMP

FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 34/59 (57%), Positives = 41/59 (69%)

Query:    10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
             Q+F LRWN+ Q+++LS F  L   E F DVTLA +G    AHK+VLSACSPYF TL  S
Sbjct:     6 QRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMVLSACSPYFNTLFVS 64

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0045467 "R7 cell development" evidence=IMP;TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0017053 "transcriptional repressor complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0048053 "R1/R6 development" evidence=IMP

GO:0048750 "compound eye corneal lens morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)]

 Score = 159 (61.0 bits), Expect = 2.3e-10, P = 2.3e-10
 Identities = 29/58 (50%), Positives = 39/58 (67%)

Query:     8 VDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
             +DQQF LRWN+  T++      L   E   DVTLAC+G +  AH+ +LSACSPYF+T+
Sbjct:   102 MDQQFCLRWNNHPTNLTGVLTSLLQREALCDVTLACEGETVKAHQTILSACSPYFETI 159

GO:0016545 "male courtship behavior, veined wing vibration" evidence=IMP

GO:0008049 "male courtship behavior" evidence=NAS;IMP;TAS

GO:0007618 "mating" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP;TAS

GO:0007517 "muscle organ development" evidence=IMP

GO:0007530 "sex determination" evidence=IMP;TAS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0005634 "nucleus" evidence=NAS

GO:0007617 "mating behavior" evidence=IMP

GO:0016543 "male courtship behavior, orientation prior to leg tapping and wing vibration" evidence=NAS

GO:0007620 "copulation" evidence=NAS;TAS

GO:0007417 "central nervous system development" evidence=IMP;TAS

GO:0046661 "male sex differentiation" evidence=TAS

GO:0048047 "mating behavior, sex discrimination" evidence=IGI;IMP;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0002118 "aggressive behavior" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

FB|FBgn0264981 mamo "maternal gene required for meiosis" [Drosophila melanogaster (taxid:7227)]

 Score = 156 (60.0 bits), Expect = 5.7e-10, P = 5.7e-10
 Identities = 31/69 (44%), Positives = 46/69 (66%)

Query:    10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLAC-DGCSFTAHKVVLSACSPYFKTL-LK 67
             + + LRWN++Q+++L  F  L  +   VDVTL C +G S  AHKVVLSACS YF++L L+
Sbjct:     4 EHYCLRWNNYQSNLLGVFSQLLQDGSLVDVTLVCSEGTSIRAHKVVLSACSSYFQSLFLE 63

Query:    68 SIDGRRLCV 76
               +G  + +
Sbjct:    64 HPEGHLIVI 72

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0003676 "nucleic acid binding" evidence=IEA;ISS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0035041 "sperm chromatin decondensation" evidence=IMP

GO:0007143 "female meiosis" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0007276 "gamete generation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24174	ABRU_DROME	No assigned EC number	0.8596	0.7125	0.0630	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	80
pfam00651	101	pfam00651, BTB, BTB/POZ domain	9e-15
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	3e-09
PHA02713	557	PHA02713, PHA02713, hypothetical protein; Provisio	0.002

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 62.6 bits (153), Expect = 9e-15
 Identities = 20/42 (47%), Positives = 23/42 (54%)

Query: 27 FRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
             LR+  +  DVTL      F AHK VL+ACSPYFK L   
Sbjct: 1  LNELRENGELCDVTLVVGDKEFHAHKAVLAACSPYFKALFTG 42

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 48.5 bits (116), Expect = 3e-09
 Identities = 19/31 (61%), Positives = 20/31 (64%)

Query: 38 DVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          DVTL   G  F AHK VL+A SPYFK L  S
Sbjct: 1  DVTLVVGGKKFHAHKAVLAAHSPYFKALFSS 31

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)

Query: 23 ILSSFRHLRDEEDFVDVTLAC-DGCSFTAHKVVLSACSPYFKTLLKS 68
          ++S+  +L D++   DV +   DG    AHK +L+A S YF+TL  +
Sbjct: 12 VVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTT 58

Length = 557

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
PHA02713	557	hypothetical protein; Provisional	99.58
KOG4441|consensus	571		99.57
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.31
PHA02790	480	Kelch-like protein; Provisional	99.27
KOG4350|consensus	620		99.14
PHA03098	534	kelch-like protein; Provisional	99.12
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	98.79
KOG4591|consensus	280		98.48
KOG0783|consensus	1267		98.33
KOG2075|consensus	521		98.11
KOG2838|consensus	401		97.41
KOG0783|consensus	1267		97.14
KOG4682|consensus	488		96.8
KOG2838|consensus	401		95.52

>PHA02713 hypothetical protein; Provisional

Probab=99.58  E-value=1.4e-15  Score=112.68  Aligned_cols=58  Identities=28%  Similarity=0.400  Sum_probs=53.8

Q ss_pred             eeechhHHHHHHHHHHHhhCCCceeEEEEeC-CeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678         14 LRWNDFQTSILSSFRHLRDEEDFVDVTLACD-GCSFTAHKVVLSACSPYFKTLLKSIDG   71 (80)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~-g~~~~~Hk~vLaa~S~~F~~~f~~~~~   71 (80)
                      +....|+..+++.|++||+++.+|||+|.++ |+.|+|||+|||++|+|||+||+++..
T Consensus         3 ~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~   61 (557)
T PHA02713          3 IDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMI   61 (557)
T ss_pred             cchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCch
Confidence            4567889999999999999999999999997 899999999999999999999998754

>KOG4441|consensus

Probab=99.57  E-value=3e-15  Score=111.35  Aligned_cols=65  Identities=32%  Similarity=0.498  Sum_probs=59.0

Q ss_pred             CCceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCC
Q psy12678          8 VDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGR   72 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~   72 (80)
                      ......+....|...+++.|+.+|+++.+|||+|.+++++|+|||+|||++|+|||+||+++..+
T Consensus         8 ~~~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e   72 (571)
T KOG4441|consen    8 FNSTSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKE   72 (571)
T ss_pred             cccccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCccc
Confidence            34456678889999999999999999999999999999999999999999999999999987543

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.31  E-value=1.6e-12  Score=76.96  Aligned_cols=43  Identities=37%  Similarity=0.682  Sum_probs=38.3

Q ss_pred             HHHHhhCCCceeEEEEeC-CeEEeceeeeecccCHHHHHhhcCC
Q psy12678         27 FRHLRDEEDFVDVTLACD-GCSFTAHKVVLSACSPYFKTLLKSI   69 (80)
Q Consensus        27 l~~~~~~~~~~Dv~l~v~-g~~~~~Hk~vLaa~S~~F~~~f~~~   69 (80)
                      |+++++++.++|++|.++ ++.|++||.||+++|+||+.+|.+.
T Consensus         1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~   44 (111)
T PF00651_consen    1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGS   44 (111)
T ss_dssp             HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTT
T ss_pred             ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccc
Confidence            578999999999999999 8999999999999999999999998

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>PHA02790 Kelch-like protein; Provisional

Probab=99.27  E-value=3.1e-12  Score=93.33  Aligned_cols=47  Identities=23%  Similarity=0.383  Sum_probs=40.1

Q ss_pred             HHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCC
Q psy12678         25 SSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGR   72 (80)
Q Consensus        25 ~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~   72 (80)
                      +.+-.+|.++.+|||++++|+ +|+|||+|||++|+|||+||+++..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~-~~~~HR~VLAa~S~YFraMF~~~~~E   57 (480)
T PHA02790         11 KNILALSMTKKFKTIIEAIGG-NIIVNSTILKKLSPYFRTHLRQKYTK   57 (480)
T ss_pred             hhHHHHHhhhhhceEEEEcCc-EEeeehhhhhhcCHHHHHHhcCCccc
Confidence            455678889999998877665 79999999999999999999988643

>KOG4350|consensus

Probab=99.14  E-value=1.7e-11  Score=88.83  Aligned_cols=61  Identities=31%  Similarity=0.439  Sum_probs=51.8

Q ss_pred             eechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceE
Q psy12678         15 RWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLC   75 (80)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~   75 (80)
                      +.-.-...+.+.+.+++.+..++||+++|++++|+|||+|||++|.|||+++-++..+..+
T Consensus        23 ~~~~i~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q   83 (620)
T KOG4350|consen   23 ESAAISNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQ   83 (620)
T ss_pred             hhhhhccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhh
Confidence            3334555677889999999999999999999999999999999999999999887654433

>PHA03098 kelch-like protein; Provisional

Probab=99.12  E-value=3.5e-11  Score=87.93  Aligned_cols=39  Identities=31%  Similarity=0.503  Sum_probs=36.9

Q ss_pred             CCCceeEEEEe--CCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678         33 EEDFVDVTLAC--DGCSFTAHKVVLSACSPYFKTLLKSIDG   71 (80)
Q Consensus        33 ~~~~~Dv~l~v--~g~~~~~Hk~vLaa~S~~F~~~f~~~~~   71 (80)
                      ++.+|||+|.+  +|++|+|||.||+++|+||++||+++..
T Consensus         6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~   46 (534)
T PHA03098          6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK   46 (534)
T ss_pred             cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC
Confidence            78999999998  9999999999999999999999998865

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=98.79  E-value=4e-09  Score=58.97  Aligned_cols=34  Identities=56%  Similarity=0.837  Sum_probs=31.6

Q ss_pred             eEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678         38 DVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG   71 (80)
Q Consensus        38 Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~   71 (80)
                      |+++.++|+.|++||.+|+++|+||+.+|.++..
T Consensus         1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~   34 (90)
T smart00225        1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFK   34 (90)
T ss_pred             CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCc
Confidence            6889999999999999999999999999998754

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG4591|consensus

Probab=98.48  E-value=9e-08  Score=64.35  Aligned_cols=52  Identities=29%  Similarity=0.434  Sum_probs=46.1

Q ss_pred             echhHHHHHHHHHHHhhCCCceeEEEEeCC---eEEeceeeeecccCHHHHHhhcCC
Q psy12678         16 WNDFQTSILSSFRHLRDEEDFVDVTLACDG---CSFTAHKVVLSACSPYFKTLLKSI   69 (80)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g---~~~~~Hk~vLaa~S~~F~~~f~~~   69 (80)
                      ..++++.++....+++++.+|+|+++.++|   +.++|||.|||++|++++  |.+.
T Consensus        46 ~dSF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~  100 (280)
T KOG4591|consen   46 PDSFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANG  100 (280)
T ss_pred             chhHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccC
Confidence            346888999999999999999999999985   779999999999999997  6554

>KOG0783|consensus

Probab=98.33  E-value=7.7e-07  Score=69.34  Aligned_cols=52  Identities=31%  Similarity=0.452  Sum_probs=41.2

Q ss_pred             HHHHHHHHhh----CCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCce
Q psy12678         23 ILSSFRHLRD----EEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRL   74 (80)
Q Consensus        23 ~~~~l~~~~~----~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~   74 (80)
                      +...+..+..    ...+.|||+.||++.|+|||.||+++|++||.+|-......+
T Consensus       541 fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~  596 (1267)
T KOG0783|consen  541 FEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSV  596 (1267)
T ss_pred             chhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccc
Confidence            4445555544    457888999999999999999999999999999976655433

>KOG2075|consensus

Probab=98.11  E-value=2.9e-06  Score=62.55  Aligned_cols=60  Identities=20%  Similarity=0.248  Sum_probs=51.9

Q ss_pred             EeeechhHHHHHHHHHHHhhCCCceeEEEEeCC-----eEEeceeeeecccCHHHHHhhcCCCCC
Q psy12678         13 ALRWNDFQTSILSSFRHLRDEEDFVDVTLACDG-----CSFTAHKVVLSACSPYFKTLLKSIDGR   72 (80)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g-----~~~~~Hk~vLaa~S~~F~~~f~~~~~~   72 (80)
                      -+.|..-...+......++++...+|+.++||+     +.|||||.|||..|+.|.+||.++...
T Consensus        91 ~~nwq~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~  155 (521)
T KOG2075|consen   91 IPNWQAQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAE  155 (521)
T ss_pred             CcccccchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCccc
Confidence            456666677888889999999999999999973     579999999999999999999887543

>KOG2838|consensus

Probab=97.41  E-value=5.7e-05  Score=53.10  Aligned_cols=53  Identities=26%  Similarity=0.392  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCC
Q psy12678         20 QTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGR   72 (80)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~   72 (80)
                      ...++..+.+.++...+.|+-+......|++||++|+++|++|+.+.+++++.
T Consensus       114 a~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~  166 (401)
T KOG2838|consen  114 ANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEP  166 (401)
T ss_pred             hhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCc
Confidence            45678888888889999999999999999999999999999999988877654

>KOG0783|consensus

Probab=97.14  E-value=0.00018  Score=56.58  Aligned_cols=32  Identities=34%  Similarity=0.560  Sum_probs=26.7

Q ss_pred             eEEEEe-CCeEEeceeeeecccCHHHHHhhcCC
Q psy12678         38 DVTLAC-DGCSFTAHKVVLSACSPYFKTLLKSI   69 (80)
Q Consensus        38 Dv~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~~   69 (80)
                      |+.+++ +|+.|+|||++|++|.+||..||..-
T Consensus       712 d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~  744 (1267)
T KOG0783|consen  712 DTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFV  744 (1267)
T ss_pred             eEEEEecCCcCcccceeEeeeHHHHHHHHHHHH
Confidence            444443 88999999999999999999999654

>KOG4682|consensus

Probab=96.80  E-value=0.0015  Score=47.86  Aligned_cols=44  Identities=27%  Similarity=0.359  Sum_probs=39.1

Q ss_pred             HHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678         27 FRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG   71 (80)
Q Consensus        27 l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~   71 (80)
                      ++.++.++.-+||++.+-|+.|+.||.-|.. |+||++||++...
T Consensus        60 yq~lf~q~enSDv~l~alg~eWrlHk~yL~Q-S~yf~smf~Gtw~  103 (488)
T KOG4682|consen   60 YQNLFLQGENSDVILEALGFEWRLHKPYLFQ-SEYFKSMFSGTWK  103 (488)
T ss_pred             HHHHHhcCCCcceehhhccceeeeeeeeeec-cHHHHHHhccccC
Confidence            5568889999999999999999999999976 5899999998744

>KOG2838|consensus

Probab=95.52  E-value=0.0038  Score=44.10  Aligned_cols=47  Identities=28%  Similarity=0.383  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhhCCCceeEEEE--eCCe--------------EEeceeeeecccCHHHHHhhc
Q psy12678         21 TSILSSFRHLRDEEDFVDVTLA--CDGC--------------SFTAHKVVLSACSPYFKTLLK   67 (80)
Q Consensus        21 ~~~~~~l~~~~~~~~~~Dv~l~--v~g~--------------~~~~Hk~vLaa~S~~F~~~f~   67 (80)
                      ..+-..++.++++....|+.+.  ++|+              .++||++|.+++|++||.++.
T Consensus       220 kkLd~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~  282 (401)
T KOG2838|consen  220 KKLDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLL  282 (401)
T ss_pred             hhhhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHH
Confidence            3445566777777766665553  3432              589999999999999999873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
2nn2_A	133	Crystal Structure Of The Btb Domain From The LrfZBT		2e-05
2if5_A	120	Structure Of The Poz Domain Of Human Lrf, A Master		4e-04
3m52_A	117	Crystal Structure Of The Btb Domain From The Miz-1Z		9e-04
2q81_A	119	Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length		9e-04
3ga1_A	129	Crystal Structure Of The Human Nac1 Poz Domain Leng		9e-04

>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7 Transcriptional Regulator Length = 133

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 32/67 (47%)
Query: 2  GGVGTPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPY 61
          G +   VD    + + D  + ILS     R +    DV +  +G  F  H+ VL+ACS Y
Sbjct: 1  GSMAGGVDGPIGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQY 60
Query: 62 FKTLLKS 68
          FK L  S
Sbjct: 61 FKKLFTS 67

>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master Regulator Of Oncogenesis Length = 120

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 12 FALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
            + + D  + ILS     R +    DV +  +G  F  H+ VL+ACS YFK L  S
Sbjct: 1  IGIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTS 57

>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17 Transcription Regulator Length = 117

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 21/43 (48%)
Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
          +L      R      D T   DG  F AHK VL+ACS YFK L
Sbjct: 12 VLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKML 54

>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN Length = 119

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/43 (44%), Positives = 21/43 (48%)
Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
          +L      R      D T   DG  F AHK VL+ACS YFK L
Sbjct: 14 VLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKML 56

>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain Length = 129

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          Q   +   +F  SIL      R +  + DV++   G +F AH+ VL+A S YF+ L  +
Sbjct: 7  QTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNN 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	1e-16
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	5e-16
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	1e-15
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	2e-15
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	2e-15
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	3e-15
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	4e-15
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	4e-15
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	4e-15
2vpk_A	116	Myoneurin; transcription regulation, transcription	5e-15
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	9e-15
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	9e-15
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	2e-14
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	4e-14
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	5e-14
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	1e-13
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	2e-13
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	5e-12
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	2e-10
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	2e-10

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 68.5 bits (168), Expect = 1e-16
 Identities = 19/66 (28%), Positives = 26/66 (39%)

Query: 3  GVGTPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYF 62
          G      Q  A+        +L +    R+E  F D  L  DG      K +L+A SPY 
Sbjct: 14 GTENLYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYI 73

Query: 63 KTLLKS 68
          +T L  
Sbjct: 74 RTKLNY 79

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 66.1 bits (162), Expect = 5e-16
 Identities = 20/64 (31%), Positives = 27/64 (42%)

Query: 5  GTPVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKT 64
          G      +        T+IL      R ++   DVTL  +   F AH+ VL+ACS YF  
Sbjct: 1  GPLGSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQ 60

Query: 65 LLKS 68
           L  
Sbjct: 61 ALVG 64

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 65.3 bits (160), Expect = 1e-15
 Identities = 20/54 (37%), Positives = 30/54 (55%)

Query: 12 FALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
          FA   +   T++L S    R ++   DVT+  +G  F AH+ VL+ACS YF + 
Sbjct: 5  FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSR 58

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 64.2 bits (157), Expect = 2e-15
 Identities = 19/57 (33%), Positives = 22/57 (38%)

Query: 12 FALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
              +      +L      R      D T   DG  F AHK VL+ACS YFK L   
Sbjct: 3  LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD 59

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 64.6 bits (158), Expect = 2e-15
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query: 9  DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTL 65
             FA   +   T++L S    R ++   DVT+  +G  F AH+ VL+ACS YF + 
Sbjct: 9  SAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSR 65

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 63.8 bits (156), Expect = 3e-15
 Identities = 19/52 (36%), Positives = 25/52 (48%)

Query: 17 NDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
            +  S+L+S    R    F DVT+  +   F AHK +LSA S YF  L   
Sbjct: 12 IQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSV 63

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 63.8 bits (156), Expect = 4e-15
 Identities = 14/52 (26%), Positives = 20/52 (38%)

Query: 17 NDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
              T +L     +R      DV +  D   F AH+ VL+  S  F+ L   
Sbjct: 9  PSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHR 60

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 63.8 bits (156), Expect = 4e-15
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 12 FALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
            +++    + +L +   LR  +   DV +      F AHK VL ACS  F ++   
Sbjct: 5  SQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD 61

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 63.7 bits (156), Expect = 4e-15
 Identities = 20/51 (39%), Positives = 26/51 (50%)

Query: 18 DFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          D  + ILS     R +    DV +  +G  F  H+ VL+ACS YFK L  S
Sbjct: 7  DHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTS 57

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 63.4 bits (155), Expect = 5e-15
 Identities = 14/61 (22%), Positives = 25/61 (40%)

Query: 17 NDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCV 76
          +     +L      R+     D T+      F AH+ VL++ S YF  + +S     + +
Sbjct: 3  SHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFL 62

Query: 77 D 77
          D
Sbjct: 63 D 63

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 63.1 bits (154), Expect = 9e-15
 Identities = 19/59 (32%), Positives = 30/59 (50%)

Query: 10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          Q   +   +F  SIL      R +  + DV++   G +F AH+ VL+A S YF+ L  +
Sbjct: 7  QTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNN 65

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 62.6 bits (153), Expect = 9e-15
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query: 16 WNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          +      +L      R++  + D TL   G  F AH  VL+ CS +F++L   
Sbjct: 4  FVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGD 56

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 62.3 bits (152), Expect = 2e-14
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 21 TSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
            +L      R++  + D TL   G  F AH  VL+ CS +F+ +   
Sbjct: 10 VRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGD 57

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 63.8 bits (156), Expect = 4e-14
 Identities = 16/53 (30%), Positives = 23/53 (43%)

Query: 21 TSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRR 73
            +L +    R+E  F D  L  DG      K +L+A SPY +T L     + 
Sbjct: 16 ARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPPKD 68

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score = 61.4 bits (150), Expect = 5e-14
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLL 66
          +      L +   F D  L   G  F AHK +L+A SP F  + 
Sbjct: 12 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMF 55

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score = 62.3 bits (152), Expect = 1e-13
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 15 RWNDFQTSILSSFRHLRDEEDFVDVTLAC---DGCSFTAHKVVLSACSPYFKTLLKS 68
            +   + +       R +  F D+TL      G  F AH+ VL+A + YF  LL  
Sbjct: 11 ECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSG 67

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score = 60.7 bits (148), Expect = 2e-13
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 23 ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLL 66
          +      L +   F D  L   G  F AHK +L+A SP F  + 
Sbjct: 21 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMF 64

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 55.7 bits (135), Expect = 5e-12
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 17 NDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSI 69
          + + +  L      R      D  +      F AH +VL+  S       +  
Sbjct: 12 SPYGSDRLVQ-LAARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQWA 63

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 51.4 bits (124), Expect = 2e-10
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 4/38 (10%)

Query: 30 LRDEEDFVDVTL----ACDGCSFTAHKVVLSACSPYFK 63
          + + E   DV           +  AHK VL+  S  F 
Sbjct: 2  MFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFY 39

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 53.4 bits (128), Expect = 2e-10
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 23  ILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLL 66
           +      L +   F D  L   G  F AHK +L+A SP F  + 
Sbjct: 161 LADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMF 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.79
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.79
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.78
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.75
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.75
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.75
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.74
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.73
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.73
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.72
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.71
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.7
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.69
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.65
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.64
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.59
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.5
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.48
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.45
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.39
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	97.75
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	97.25
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	94.54
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	91.45
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	91.25
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	91.23

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.79  E-value=1.5e-19  Score=111.42  Aligned_cols=71  Identities=31%  Similarity=0.483  Sum_probs=63.9

Q ss_pred             CCCceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceEEe
Q psy12678          7 PVDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCVD   77 (80)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~~~   77 (80)
                      +++..+.+.++.|+..+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.++..+...+.
T Consensus         7 ~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~   77 (138)
T 2z8h_A            7 SESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHSRIVGQTDAELTVT   77 (138)
T ss_dssp             CTTCCCCCCCSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCTTEEEE
T ss_pred             CCCCeeEecCCchHHHHHHHHHHHHhhCCCcCeEEEECCEEEechHHHHHHcCHHHHHHHhcCCCCCceEE
Confidence            34577889999999999999999999999999999999999999999999999999999998876544443

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.79  E-value=1.7e-19  Score=109.23  Aligned_cols=70  Identities=30%  Similarity=0.402  Sum_probs=63.2

Q ss_pred             CCceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceEEe
Q psy12678          8 VDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCVD   77 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~~~   77 (80)
                      ......++++.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++..+...+.
T Consensus         4 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~e~~~i~   73 (125)
T 3ohu_A            4 GSPMYVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTKNDLVVS   73 (125)
T ss_dssp             SCCCEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTCCCSSCEEE
T ss_pred             CCcceeeecHHHHHHHHHHHHHHHhcCCccceEEEECCEEEechHHHHHHcCHHHHHHhcCCCCCCcEEE
Confidence            4567788999999999999999999999999999999999999999999999999999998876544443

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.78  E-value=2.5e-19  Score=108.68  Aligned_cols=68  Identities=31%  Similarity=0.485  Sum_probs=59.7

Q ss_pred             CceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceEE
Q psy12678          9 DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLCV   76 (80)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~~   76 (80)
                      .+.+.++++.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++..+...+
T Consensus         2 ~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~mf~~~~~e~~~i   69 (124)
T 2ihc_A            2 MSVFAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQADGELNI   69 (124)
T ss_dssp             -CEEEEECSSHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHTTC---CEEE
T ss_pred             CceeeecCcchHHHHHHHHHHHHhcCCCcCEEEEECCEEEecHHHHHHHcCHHHHHHHcCCCCCCceE
Confidence            35778999999999999999999999999999999999999999999999999999999886554333

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.75  E-value=6.9e-19  Score=106.06  Aligned_cols=62  Identities=26%  Similarity=0.522  Sum_probs=56.9

Q ss_pred             eeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceE
Q psy12678         14 LRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLC   75 (80)
Q Consensus        14 ~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~   75 (80)
                      ++|++|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++....+.
T Consensus         2 ~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~~~~~i~   63 (119)
T 3b84_A            2 MSFVQHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGSVV   63 (119)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTTTCCCEE
T ss_pred             cccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEEeeHHHHhhcCHHHHHHHCCCCCCeEE
Confidence            56789999999999999999999999999999999999999999999999999987644443

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.75  E-value=8.3e-19  Score=105.39  Aligned_cols=59  Identities=34%  Similarity=0.578  Sum_probs=54.0

Q ss_pred             EeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678         13 ALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG   71 (80)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~   71 (80)
                      .++++.|+..+++.++++|+++.+|||++.++|+.|+|||.||+++|+||++||.++..
T Consensus         2 ~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~~f~~~~~   60 (120)
T 2if5_A            2 GIPFPDHSSDILSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKLFTSGAV   60 (120)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHC---
T ss_pred             CcCccchHHHHHHHHHHHHhcCCCCCeEEEECCEEEeHHHHHHHHhCHHHHHHhcCCcc
Confidence            46789999999999999999999999999999999999999999999999999988743

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.75  E-value=1.2e-18  Score=105.72  Aligned_cols=62  Identities=24%  Similarity=0.421  Sum_probs=57.2

Q ss_pred             ceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678         10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG   71 (80)
Q Consensus        10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~   71 (80)
                      ....++++.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++..
T Consensus         3 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~iLaa~S~~F~~~f~~~~~   64 (127)
T 1r29_A            3 ADSQIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLK   64 (127)
T ss_dssp             --CCCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTT
T ss_pred             CCccccchhHHHHHHHHHHHHHhcCCCCCEEEEECCEEEehHHHHHHHhCHHHHHHhcCCcc
Confidence            34568899999999999999999999999999999999999999999999999999998755

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.74  E-value=1.7e-18  Score=105.49  Aligned_cols=68  Identities=28%  Similarity=0.475  Sum_probs=60.7

Q ss_pred             CCceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceE
Q psy12678          8 VDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLC   75 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~   75 (80)
                      ..+.+.++++.++..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++....+.
T Consensus         5 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLaa~S~~F~~~f~~~~~~~i~   72 (129)
T 3ga1_A            5 SAQTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAVVE   72 (129)
T ss_dssp             --CEEEEECTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHBHHHHHHHHHCCCSEEE
T ss_pred             CCceEEeecCcHHHHHHHHHHHHHhcCCCcceEEEECCEEEEehHHHHHHcCHHHHHHHcCCCCCEEE
Confidence            45688899999999999999999999999999999999999999999999999999999887444333

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.73  E-value=2.3e-18  Score=103.69  Aligned_cols=62  Identities=31%  Similarity=0.427  Sum_probs=58.2

Q ss_pred             CCceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCC
Q psy12678          8 VDQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSI   69 (80)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~   69 (80)
                      .++.+.+.++.|+..+++.++++|+++.+|||++.++|+.|+|||.||+++|+||+++|.++
T Consensus         3 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~~F~~~f~~~   64 (116)
T 3fkc_A            3 SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFSVA   64 (116)
T ss_dssp             -CCCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEETTEEEEECHHHHHHHCHHHHHHTTSC
T ss_pred             cCceeeecCccHHHHHHHHHHHHHhcCCceeEEEEECCEEEehhHHHHHHcCHHHHHHHcCC
Confidence            34677888999999999999999999999999999999999999999999999999999887

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.73  E-value=2.6e-18  Score=103.70  Aligned_cols=60  Identities=25%  Similarity=0.367  Sum_probs=56.8

Q ss_pred             ceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCC
Q psy12678         10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSI   69 (80)
Q Consensus        10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~   69 (80)
                      +.+.++++.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++
T Consensus         2 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~~f~~~   61 (121)
T 1buo_A            2 GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRN   61 (121)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSC
T ss_pred             CceeccCcchHHHHHHHHHHHHhcCCCCCEEEEECCEEEehhHHHHhhcCHHHHHHHcCC
Confidence            356788999999999999999999999999999999999999999999999999999876

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.72  E-value=2.3e-18  Score=107.14  Aligned_cols=62  Identities=29%  Similarity=0.427  Sum_probs=56.3

Q ss_pred             CceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCC
Q psy12678          9 DQQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSID   70 (80)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~   70 (80)
                      -+.+.+.++.|+..+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.++.
T Consensus        20 ~~~~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~   81 (144)
T 2ppi_A           20 FQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNP   81 (144)
T ss_dssp             CCCCCCCCTTHHHHHHHHHHHTTC--CCCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHCC
T ss_pred             eeeeeecCcchHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHcCHHHHHHHcCCC
Confidence            46678899999999999999999999999999999999999999999999999999998764

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.71  E-value=6.3e-18  Score=101.08  Aligned_cols=60  Identities=22%  Similarity=0.371  Sum_probs=54.3

Q ss_pred             echhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceE
Q psy12678         16 WNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLC   75 (80)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~   75 (80)
                      .+.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++....+.
T Consensus         2 ~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~~~~~i~   61 (116)
T 2vpk_A            2 MSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVF   61 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTTCCCSCEE
T ss_pred             chhHHHHHHHHHHHHHhcCCCCcEEEEECCEEEeccHHHHhhcCHHHHHHHcCCCCCeEE
Confidence            357899999999999999999999999999999999999999999999999987444443

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.70  E-value=1.1e-17  Score=102.88  Aligned_cols=61  Identities=25%  Similarity=0.467  Sum_probs=50.8

Q ss_pred             eechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceE
Q psy12678         15 RWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLC   75 (80)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~   75 (80)
                      .++.|...+++.|+++|+++.+|||+|.++|+.|+|||.||+++|+||++||.++....+.
T Consensus         4 ~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~mf~~~~~~~i~   64 (135)
T 2yy9_A            4 GSSGHSVRVLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGSVV   64 (135)
T ss_dssp             ---CHHHHHHHHHHHHHHTTTTCCEEEEETTEEEEECHHHHHHHCHHHHHTCC----CCEE
T ss_pred             ccccHHHHHHHHHHHHHhcCCCcceEEEECCEEEehHHHHHHHhCHHHHHHHcCCCCCeEE
Confidence            4578999999999999999999999999999999999999999999999999987644333

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.69  E-value=6.1e-18  Score=101.88  Aligned_cols=58  Identities=33%  Similarity=0.556  Sum_probs=53.6

Q ss_pred             eEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCC
Q psy12678         12 FALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSI   69 (80)
Q Consensus        12 ~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~   69 (80)
                      ..++++.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||.++
T Consensus         3 ~~~~~~~h~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~yF~~~f~~~   60 (119)
T 2q81_A            3 LGSDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVDQ   60 (119)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHHC
T ss_pred             cccccchHHHHHHHHHHHHHhcCCCcceEEEECCEEEehhHHHHHHcCHHHHHHHcCC
Confidence            4567789999999999999999999999999999999999999999999999999875

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.65  E-value=4.7e-17  Score=108.32  Aligned_cols=61  Identities=28%  Similarity=0.405  Sum_probs=49.4

Q ss_pred             eeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678         11 QFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG   71 (80)
Q Consensus        11 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~   71 (80)
                      ...+.++.|+..+++.|+++|+++.+|||++.++|+.|+|||.||+++|+||++||+++..
T Consensus         6 ~~~~~~~~~~~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hr~vLaa~S~yF~~mf~~~~~   66 (256)
T 3hve_A            6 GSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKLNYNPP   66 (256)
T ss_dssp             ----CCTTTHHHHHHHHHTCCC--CCCCEEEEETTEEEEECHHHHHTTCHHHHHTC-----
T ss_pred             CCccCChHHHHHHHHHHHHHHhcCCCcceEEEECCEEEechHHHHHHcCHHHHHHhCCCCC
Confidence            4668899999999999999999999999999999999999999999999999999987643

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.64  E-value=8.9e-17  Score=108.20  Aligned_cols=63  Identities=25%  Similarity=0.357  Sum_probs=55.4

Q ss_pred             ceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeC---CeEEeceeeeecccCHHHHHhhcCCCCC
Q psy12678         10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACD---GCSFTAHKVVLSACSPYFKTLLKSIDGR   72 (80)
Q Consensus        10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~---g~~~~~Hk~vLaa~S~~F~~~f~~~~~~   72 (80)
                      +...+.++.|+..+++.|+++|+++.+|||+|.|+   |+.|+|||.||+++|+||++||+++..+
T Consensus         6 ~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~f~~Hr~vLaa~S~yF~~mf~~~~~e   71 (279)
T 3i3n_A            6 EAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLLSGQFSE   71 (279)
T ss_dssp             CEEEEECTTHHHHHHHHHHHHHHHTTTCCEEEECC----CEEEECHHHHHHHCTTSGGGCCC----
T ss_pred             cccCcCCHhHHHHHHHHHHHHHhcCCCCCeEEEEcCCCCeEEehHHHHHHHcCHHHHHHhcCCCcc
Confidence            35678999999999999999999999999999998   9999999999999999999999987543

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.59  E-value=1.4e-16  Score=100.08  Aligned_cols=57  Identities=25%  Similarity=0.371  Sum_probs=50.5

Q ss_pred             echhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCC
Q psy12678         16 WNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGR   72 (80)
Q Consensus        16 ~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~   72 (80)
                      +...++.+.+.++++++++.+|||+|.++|+.|+|||.||+++|+||++||.++..+
T Consensus        14 ~~~p~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~e   70 (172)
T 3htm_A           14 VKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEE   70 (172)
T ss_dssp             SCCCCCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSCCCG
T ss_pred             CCCCHHHHHHHHHHHHhCCCCcceEEEECCEEEEeeHHHHHHcCHHHHHHHccCccc
Confidence            334456788999999999999999999999999999999999999999999987543

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.50  E-value=2.6e-15  Score=91.96  Aligned_cols=52  Identities=27%  Similarity=0.459  Sum_probs=47.7

Q ss_pred             HHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678         20 QTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG   71 (80)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~   71 (80)
                      ++.+.+.++++++++.+|||++.++|+.|+|||.||+++|+||+++|.++..
T Consensus         9 ~~~l~~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~iL~~~S~~F~~~f~~~~~   60 (145)
T 4eoz_A            9 ECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME   60 (145)
T ss_dssp             CCCHHHHHHHHHHHTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHHSSSH
T ss_pred             hHHHHHHHHHHHhCCCCcceEEEECCEEEEeehHHHHHcCHHHHHHHcCCCc
Confidence            3467889999999999999999999999999999999999999999988643

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.48  E-value=6.9e-15  Score=86.60  Aligned_cols=43  Identities=23%  Similarity=0.247  Sum_probs=36.9

Q ss_pred             HHhhCCCceeEEEEeCC----eEEeceeeeecccCHHHHHhhcCCCC
Q psy12678         29 HLRDEEDFVDVTLACDG----CSFTAHKVVLSACSPYFKTLLKSIDG   71 (80)
Q Consensus        29 ~~~~~~~~~Dv~l~v~g----~~~~~Hk~vLaa~S~~F~~~f~~~~~   71 (80)
                      ++++++.+|||++.++|    +.|+|||.||+++|+||++||.++..
T Consensus         1 ~l~~~~~~~Dv~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~   47 (109)
T 2vkp_A            1 SMFNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLA   47 (109)
T ss_dssp             CCTTCCTTCCEEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC----
T ss_pred             CcccCCCcccEEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcc
Confidence            36789999999999998    89999999999999999999998754

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.45  E-value=1.8e-14  Score=87.12  Aligned_cols=52  Identities=17%  Similarity=0.167  Sum_probs=44.7

Q ss_pred             eeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHH
Q psy12678         11 QFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKT   64 (80)
Q Consensus        11 ~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~   64 (80)
                      ......+.+...+++.|+  |+++.+|||++.++|+.|+|||+|||++|+||++
T Consensus         7 p~~~~~~~~~~~~l~~l~--r~~~~~~Dv~l~v~~~~f~aHk~vLaa~S~yF~~   58 (119)
T 3m5b_A            7 PIRLPSPYGSDRLVQLAA--RLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGR   58 (119)
T ss_dssp             CEEECCTTTTCHHHHHHH--HHTTTTCCEEEEETTEEEEECHHHHHTTCGGGCC
T ss_pred             CCCCCCCcchHHHHHHHH--HhcCCCcceEEEECCEEEeeEHHHHHHcCHHHhc
Confidence            344555667778888886  7789999999999999999999999999999985

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.39  E-value=1.4e-13  Score=93.56  Aligned_cols=51  Identities=27%  Similarity=0.457  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678         21 TSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG   71 (80)
Q Consensus        21 ~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~   71 (80)
                      ..+.+.++++++++.++||+|.|+|+.|+|||.|||++|+||++||.++..
T Consensus       159 ~~l~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~  209 (312)
T 3hqi_A          159 CRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEME  209 (312)
T ss_dssp             CCHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC---
T ss_pred             chHHHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCcc
Confidence            467889999999999999999999999999999999999999999988643

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=97.75  E-value=1.7e-05  Score=45.93  Aligned_cols=29  Identities=28%  Similarity=0.382  Sum_probs=25.7

Q ss_pred             EEEEe-CCeEEeceeeeecccCHHHHHhhcC
Q psy12678         39 VTLAC-DGCSFTAHKVVLSACSPYFKTLLKS   68 (80)
Q Consensus        39 v~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~   68 (80)
                      |+|+. +|+.|.+||.+ |++|+||++||.+
T Consensus         4 v~L~SsDg~~F~v~r~v-A~~S~~ik~m~~~   33 (97)
T 4ajy_C            4 VKLISSDGHEFIVKREH-ALTSGTIKAMLSG   33 (97)
T ss_dssp             EEEECTTCCEEEEEHHH-HTTSHHHHHHHCC
T ss_pred             EEEEecCCcEEEecHHH-HHHhHHHHHHHHh
Confidence            55654 78999999999 9999999999987

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=94.54  E-value=0.025  Score=34.43  Aligned_cols=30  Identities=27%  Similarity=0.393  Sum_probs=26.2

Q ss_pred             EEEEe-CCeEEeceeeeecccCHHHHHhhcCC
Q psy12678         39 VTLAC-DGCSFTAHKVVLSACSPYFKTLLKSI   69 (80)
Q Consensus        39 v~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~~   69 (80)
                      |+|+. +|+.|.+|+.+ |..|.+++.||.+.
T Consensus         4 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~   34 (141)
T 1fs1_B            4 IKLQSSDGEIFEVDVEI-AKQSVTIKTMLEDL   34 (141)
T ss_dssp             EEEECTTSCEEEEEGGG-GGTCHHHHHHHHHT
T ss_pred             EEEEeCCCCEEEecHHH-HHHhHHHHHHHHhc
Confidence            67776 78999999998 89999999999763

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=91.45  E-value=0.13  Score=29.47  Aligned_cols=30  Identities=23%  Similarity=0.398  Sum_probs=26.2

Q ss_pred             EEEEe-CCeEEeceeeeecccCHHHHHhhcCC
Q psy12678         39 VTLAC-DGCSFTAHKVVLSACSPYFKTLLKSI   69 (80)
Q Consensus        39 v~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~~   69 (80)
                      |+|+. +|+.|.+++.+ |..|.+++.||.++
T Consensus         6 v~L~SsDg~~f~V~~~v-A~~S~~ik~ml~~~   36 (99)
T 1hv2_A            6 VTLVSKDDKEYEISRSA-AMISPTLKAMIEGP   36 (99)
T ss_dssp             EEEEETTTEEEEEEHHH-HTTCHHHHHHHHSS
T ss_pred             EEEEecCCCEEEECHHH-HHHhHHHHHHHhcc
Confidence            67765 89999999997 89999999999874

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=91.25  E-value=0.011  Score=36.83  Aligned_cols=30  Identities=23%  Similarity=0.326  Sum_probs=12.2

Q ss_pred             EEEEe-CCeEEeceeeeecccCHHHHHhhcCC
Q psy12678         39 VTLAC-DGCSFTAHKVVLSACSPYFKTLLKSI   69 (80)
Q Consensus        39 v~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~~   69 (80)
                      |+|.. +|+.|.+|+.+ |..|.+|+.||.+.
T Consensus         6 v~L~SsDg~~f~v~~~v-A~~S~~ik~ml~~~   36 (160)
T 2p1m_A            6 IVLKSSDGESFEVEEAV-ALESQTIAHMVEDD   36 (160)
T ss_dssp             --CCC---------CHH-HHTCTTTC------
T ss_pred             EEEEcCCCCEEEECHHH-HHHhHHHHHHHHcc
Confidence            56664 79999999998 88999999999765

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=91.23  E-value=0.15  Score=28.98  Aligned_cols=29  Identities=28%  Similarity=0.382  Sum_probs=25.3

Q ss_pred             EEEEe-CCeEEeceeeeecccCHHHHHhhcC
Q psy12678         39 VTLAC-DGCSFTAHKVVLSACSPYFKTLLKS   68 (80)
Q Consensus        39 v~l~v-~g~~~~~Hk~vLaa~S~~F~~~f~~   68 (80)
                      |+|+. +|+.|.+++.+ |..|.+++.||.+
T Consensus         3 v~L~SsDg~~f~V~~~~-A~~S~~ik~ml~~   32 (96)
T 2fnj_C            3 VKLISSDGHEFIVKREH-ALTSGTIKAMLSG   32 (96)
T ss_dssp             EEEECTTSCEEEEEHHH-HTTSHHHHHHHHC
T ss_pred             EEEEecCCCEEEeCHHH-HHHhHHHHHHHHc
Confidence            56665 88999999997 8899999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	80
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	6e-13
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	6e-12

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 6e-13
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query: 14 LRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKS 68
          +++    + +L +   LR  +   DV +      F AHK VL ACS  F ++   
Sbjct: 3  IQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTD 57

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 6e-12
 Identities = 14/50 (28%), Positives = 21/50 (42%)

Query: 14 LRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFK 63
          L+     T +L     +R      DV +  D   F AH+ VL+  S  F+
Sbjct: 6  LQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFE 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.76
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.75

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.2e-19  Score=109.14  Aligned_cols=62  Identities=24%  Similarity=0.352  Sum_probs=58.1

Q ss_pred             ceeEeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCC
Q psy12678         10 QQFALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDG   71 (80)
Q Consensus        10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~   71 (80)
                      +.+.+++++|+..+++.|+++|+++.+||++|.|+|+.|+|||+|||++|+||+++|.++..
T Consensus         2 ~~~~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~aHk~vLaa~S~~F~~lf~~~~~   63 (121)
T d1buoa_           2 GMIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNSQ   63 (121)
T ss_dssp             CCCCCCCTTHHHHHHHHHHHHHHHTTTCCEEEEESSCEEEECHHHHHHHCHHHHHHTTSCCS
T ss_pred             CeEEEcCCchHHHHHHHHHHHHhcCCcEeEEEEECCEEEEEEHHHhcccChhhhhhccCccc
Confidence            35678999999999999999999999999999999999999999999999999999987754

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.4e-19  Score=106.29  Aligned_cols=63  Identities=27%  Similarity=0.474  Sum_probs=57.8

Q ss_pred             EeeechhHHHHHHHHHHHhhCCCceeEEEEeCCeEEeceeeeecccCHHHHHhhcCCCCCceE
Q psy12678         13 ALRWNDFQTSILSSFRHLRDEEDFVDVTLACDGCSFTAHKVVLSACSPYFKTLLKSIDGRRLC   75 (80)
Q Consensus        13 ~~~~~~~~~~~~~~l~~~~~~~~~~Dv~l~v~g~~~~~Hk~vLaa~S~~F~~~f~~~~~~~~~   75 (80)
                      .+++++|+..++..|+++|+++.+||+++.++|+.|+|||+||+++|+||+++|.+...+...
T Consensus         2 ~~~~~~h~~~ll~~l~~l~~~~~~~Dv~l~v~~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~   64 (122)
T d1r29a_           2 QIQFTRHASDVLLNLNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLS   64 (122)
T ss_dssp             CCCCTTHHHHHHHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHHTSTTTTTCS
T ss_pred             CcccchHHHHHHHHHHHHHhcCCCeEEEEEECCEEEEEehHHhhhCCHHHHHHhccchhhhcc
Confidence            367899999999999999999999999999999999999999999999999999887655443