Psyllid ID: psy12679

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARKM
Secondary Structure (PSIPRED)
cHHHHHHccccccEEEEccccHHHHHHHHcccccEEEEEEHHcHHHHHHHHHHccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHccccccEEEEEcccHHHHHHHHHHHHccccEccHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
mmkyiyanpcehpivILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQvrgltdvppkdhykFLNARKM
Flexible Loop (DISEMBL)
mmkyiyanpcehPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTlqvrgltdvppkdhykflnarkm
Low Complexity Region (SEG)
MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARKM
Disordered region (IsUnstruct)
***YIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV**************
Disordered Region (DISOPRED)
MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRG******************
Disordered Region (DISEMBL)
MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARKM
Disordered Region (DISPRO)
MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTD***************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARKM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
Q24174	904	Protein abrupt OS=Drosoph	yes	N/A	0.789	0.066	0.666	7e-18
Q9W0K4	1067	Protein bric-a-brac 2 OS=	no	N/A	0.75	0.053	0.543	1e-13
Q9W0K7	977	Protein bric-a-brac 1 OS=	no	N/A	0.710	0.055	0.537	1e-12
Q01295	727	Broad-complex core protei	no	N/A	0.855	0.089	0.461	4e-12
Q8IN81	955	Sex determination protein	no	N/A	0.710	0.056	0.592	7e-12
Q24206	880	Broad-complex core protei	no	N/A	0.855	0.073	0.461	7e-12
Q7KRI2	127	Longitudinals lacking pro	no	N/A	0.736	0.440	0.535	8e-12
P17789	643	Protein tramtrack, beta i	no	N/A	0.736	0.087	0.517	9e-12
P42282	813	Protein tramtrack, alpha	no	N/A	0.736	0.068	0.517	3e-11
Q7KQZ4	787	Longitudinals lacking pro	no	N/A	0.671	0.064	0.529	3e-11

>sp|Q24174|ABRU_DROME Protein abrupt OS=Drosophila melanogaster GN=ab PE=1 SV=2

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query: 3   KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           + + ANPCEHPIVILRDV+  D+E LLSFMYNGEV +  +QL +FLKTA  LQ+RGL DV
Sbjct: 130 RLLKANPCEHPIVILRDVRCDDVENLLSFMYNGEVNVSHEQLPDFLKTAHLLQIRGLADV 189

Expression is vital for development; may be involved in transcriptional regulation. In embryos, muscle specific expression is required for segmental nerve b (SNb) motoneuron target recognition within ventral longitudinal muscles. Has a role in establishing and maintaining embryonic muscle attachments, adult sensory cell formation (macrochaetae) and morphogenesis of adult appendages (legs, antenna aristae and male external genitalia). Has a role in the morphogenesis of the class I dendritic neurons: selective expression of ab in class I da neurons plays a pivotal role in forming dendritic arbors, which are characteristic of the class I cells. The development of more complex arbors of class II-IV neurons depends on the absence of ab.
Drosophila melanogaster (taxid: 7227)

>sp|Q9W0K4|BAB2_DROME Protein bric-a-brac 2 OS=Drosophila melanogaster GN=bab2 PE=1 SV=2

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 6   YANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           Y NPC+HPI+I+RDV   D++AL+ FMY GE+ + QDQ+   LK A+TL++RGL +V
Sbjct: 253 YDNPCQHPIIIMRDVSWSDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAEV 309

Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.

Drosophila melanogaster (taxid: 7227)

>sp|Q9W0K7|BAB1_DROME Protein bric-a-brac 1 OS=Drosophila melanogaster GN=bab1 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 41/54 (75%)

Query: 9   PCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           PC+HPIVI+RDV   D++A++ FMY GE+ + QDQ+   L+ A+ L+VRGL DV
Sbjct: 160 PCQHPIVIMRDVNWSDLKAIVEFMYRGEINVSQDQIGPLLRIAEMLKVRGLADV 213

Probably acts as a transcriptional regulator. Required for the specification of the tarsal segment. Also involved in antenna development.

Drosophila melanogaster (taxid: 7227)

>sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4/5 OS=Drosophila melanogaster GN=br PE=1 SV=2

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 45/65 (69%)

Query: 7   ANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKD 66
           + PC+HP+++L+DV   D+ AL+ F+Y+GEV + Q  LQ FLKTA+ L+V GLT    +D
Sbjct: 63  STPCKHPVILLQDVNFMDLHALVEFIYHGEVNVHQKSLQSFLKTAEVLRVSGLTQQQAED 122

Query: 67  HYKFL 71
            +  L
Sbjct: 123 THSHL 127

Broad-complex proteins are required for puffing and transcription of salivary gland late genes during metamorphosis.

Drosophila melanogaster (taxid: 7227)

>sp|Q8IN81|FRU_DROME Sex determination protein fruitless OS=Drosophila melanogaster GN=fru PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query: 8   NPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTD 61
           N   HPI+ L+DV+  +M +LL FMY GEV +GQ  L  FLKTA++LQVRGLTD
Sbjct: 163 NQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPMFLKTAESLQVRGLTD 216

Probably acts as a transcriptional regulator. Part of the somatic sex determination hierarchy; sex determination genes transformer (tra) and transformer-2 (tra-2) switch fru splicing from the male-specific pattern to the female-specific pattern through activation of the female-specific fru 5'-splice site. Vital for the development of males and females. Controls the development of the male specific abdominal muscle of Lawrence. Plays a role in male courtship behavior and sexual orientation. Enhances male-specific expression of takeout in brain-associated fat body.

Drosophila melanogaster (taxid: 7227)

>sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6 OS=Drosophila melanogaster GN=br PE=1 SV=2

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 45/65 (69%)

Query: 7   ANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKD 66
           + PC+HP+++L+DV   D+ AL+ F+Y+GEV + Q  LQ FLKTA+ L+V GLT    +D
Sbjct: 63  STPCKHPVILLQDVNFMDLHALVEFIYHGEVNVHQKSLQSFLKTAEVLRVSGLTQQQAED 122

Query: 67  HYKFL 71
            +  L
Sbjct: 123 THSHL 127

Broad-complex proteins are required for puffing and transcription of salivary gland late genes during metamorphosis.

Drosophila melanogaster (taxid: 7227)

>sp|Q7KRI2|LOLAL_DROME Longitudinals lacking protein-like OS=Drosophila melanogaster GN=lolal PE=1 SV=1

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query: 8   NPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVP 63
           NP +HPI+IL+DV    ++A+L FMY GEV + Q+QL  FLKTA  L+V+GL + P
Sbjct: 65  NPSKHPIIILKDVSYIHLQAILEFMYAGEVNVSQEQLPAFLKTADRLKVKGLAETP 120

Required, together with Trl, for maintaining the repressed state of target genes including homeotic genes Scr and Ubx. May also be involved in the activation of homeotic genes. Binds to a DNA Polycomb response element (PRE) at the bithorax complex. Also binds to polytene chromosomes at several hundred sites, many of which are shared with Trl and ph-p. Required during embryonic development.

Drosophila melanogaster (taxid: 7227)

>sp|P17789|TTKB_DROME Protein tramtrack, beta isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=2

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 45/56 (80%)

Query: 7   ANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           ++P +HPIVIL+DV   DM++LL FMY GEV + Q++L  FL+ A++L+++GLT+V
Sbjct: 64  SHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKGLTEV 119

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform beta is required to repress inappropriate segmentation gene transcription and repress genes incompatible with development of photoreceptor cell fates. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. Inhibits Trl-dependent activation of eve. May bind to the region AGGGC/TGG. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk. A second method of degradation exists that is phyl-independent, this is mediated by recognition of motifs in the C-terminus of ttk.

Drosophila melanogaster (taxid: 7227)

>sp|P42282|TTKA_DROME Protein tramtrack, alpha isoform OS=Drosophila melanogaster GN=ttk PE=1 SV=3

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 45/56 (80%)

Query: 7   ANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           ++P +HPIVIL+DV   DM++LL FMY GEV + Q++L  FL+ A++L+++GLT+V
Sbjct: 64  SHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKGLTEV 119

Binds to a number of sites in the transcriptional regulatory region of ftz. Isoform alpha is required to repress genes that promote the R7 cell fate. Probable repressor of the transcription of the segmentation genes ftz, eve, h, odd, run, and en. May bind to the region 5'-AGGG[CT]GG-3'. Degradation of ttk is directed by binding of sinah or sina, via the adapter molecule phyl which binds to the BTB domain of ttk.

Drosophila melanogaster (taxid: 7227)

>sp|Q7KQZ4|LOLA3_DROME Longitudinals lacking protein, isoforms A/B/D/L OS=Drosophila melanogaster GN=lola PE=1 SV=1

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query: 11  EHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTD 61
           +HPI IL+DVK  ++ A++ +MY GEV I QDQL   LK A++LQ++GL+D
Sbjct: 67  KHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSD 117

Putative transcription factor required for axon growth and guidance in the central and peripheral nervous systems. Repels CNS axons away from the midline by promoting the expression of the midline repellent sli and its receptor robo.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
242007684	704	protein abrupt, putative [Pediculus huma	0.855	0.092	0.707	2e-20
270006730	383	hypothetical protein TcasGA2_TC013098 [T	0.802	0.159	0.737	3e-20
189237853	634	PREDICTED: similar to abrupt CG4807-PA [	0.802	0.096	0.737	4e-20
170043353	310	abrupt protein [Culex quinquefasciatus]	0.802	0.196	0.770	5e-20
157125848	442	abrupt protein [Aedes aegypti] gi|108882	0.789	0.135	0.766	5e-20
357607481	729	hypothetical protein KGM_19685 [Danaus p	0.815	0.085	0.725	6e-20
312375828	579	hypothetical protein AND_13530 [Anophele	0.789	0.103	0.766	7e-20
158297159	148	AGAP008031-PA [Anopheles gambiae str. PE	0.789	0.405	0.766	3e-19
328705255	680	PREDICTED: zinc finger and BTB domain-co	0.723	0.080	0.8	4e-19
380017435	622	PREDICTED: protein abrupt-like [Apis flo	0.789	0.096	0.7	7e-18

>gi|242007684|ref|XP_002424658.1| protein abrupt, putative [Pediculus humanus corporis] gi|212508151|gb|EEB11920.1| protein abrupt, putative [Pediculus humanus corporis]

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 46/65 (70%), Positives = 55/65 (84%)

Query: 3   KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           + + ANPC+HPIVILRDV + DMEALL FMY+GEV +GQ+QL +FLKTAQTLQVRGL DV
Sbjct: 162 RLLKANPCQHPIVILRDVAQKDMEALLRFMYHGEVHVGQEQLTDFLKTAQTLQVRGLADV 221

Query: 63  PPKDH 67
             KD+
Sbjct: 222 NTKDN 226

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006730|gb|EFA03178.1| hypothetical protein TcasGA2_TC013098 [Tribolium castaneum]

 Score =  102 bits (254), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 45/61 (73%), Positives = 53/61 (86%)

Query: 3   KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           + + ANPC+HPIVILRDV++ DME+LL FMYNGEV IGQ+QL +FLKTAQ LQVRGL DV
Sbjct: 63  RLLKANPCQHPIVILRDVQQKDMESLLRFMYNGEVHIGQEQLTDFLKTAQMLQVRGLADV 122

Query: 63  P 63
           P
Sbjct: 123 P 123

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237853|ref|XP_974947.2| PREDICTED: similar to abrupt CG4807-PA [Tribolium castaneum]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/61 (73%), Positives = 53/61 (86%)

Query: 3   KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           + + ANPC+HPIVILRDV++ DME+LL FMYNGEV IGQ+QL +FLKTAQ LQVRGL DV
Sbjct: 63  RLLKANPCQHPIVILRDVQQKDMESLLRFMYNGEVHIGQEQLTDFLKTAQMLQVRGLADV 122

Query: 63  P 63
           P
Sbjct: 123 P 123

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170043353|ref|XP_001849355.1| abrupt protein [Culex quinquefasciatus] gi|167866720|gb|EDS30103.1| abrupt protein [Culex quinquefasciatus]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/61 (77%), Positives = 52/61 (85%)

Query: 3  KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
          K + ANPCEHPIVILRDV+  D+E+LL FMYNGEV IGQDQL +FLKTAQ LQVRGL DV
Sbjct: 13 KLLKANPCEHPIVILRDVRSEDIESLLRFMYNGEVHIGQDQLSDFLKTAQLLQVRGLADV 72

Query: 63 P 63
          P
Sbjct: 73 P 73

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157125848|ref|XP_001660812.1| abrupt protein [Aedes aegypti] gi|108882665|gb|EAT46890.1| AAEL002008-PA, partial [Aedes aegypti]

 Score =  101 bits (252), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 46/60 (76%), Positives = 51/60 (85%)

Query: 3   KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           K + ANPCEHPIVILRDV+  D+E+LL FMYNGEV IGQDQL +FLKTAQ LQVRGL DV
Sbjct: 56  KLLKANPCEHPIVILRDVRSEDIESLLRFMYNGEVHIGQDQLSDFLKTAQLLQVRGLADV 115

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357607481|gb|EHJ65522.1| hypothetical protein KGM_19685 [Danaus plexippus]

 Score =  101 bits (251), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 45/62 (72%), Positives = 53/62 (85%)

Query: 3   KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           + + ANPC+HPIVILRDV + DME+LL FMY GEV IGQ+QL+EFL+ AQ LQVRGLTDV
Sbjct: 42  RLLKANPCQHPIVILRDVHDKDMESLLRFMYQGEVHIGQEQLKEFLRAAQLLQVRGLTDV 101

Query: 63  PP 64
           PP
Sbjct: 102 PP 103

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312375828|gb|EFR23109.1| hypothetical protein AND_13530 [Anopheles darlingi]

 Score =  101 bits (251), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 46/60 (76%), Positives = 50/60 (83%)

Query: 3   KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           K + ANPCEHPIVILRDV+  D+E LL FMYNGEV IGQDQL +FLKTAQ LQVRGL DV
Sbjct: 194 KLLKANPCEHPIVILRDVRSDDIENLLRFMYNGEVHIGQDQLSDFLKTAQLLQVRGLADV 253

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297159|ref|XP_555434.3| AGAP008031-PA [Anopheles gambiae str. PEST] gi|157015060|gb|EAL39666.3| AGAP008031-PA [Anopheles gambiae str. PEST]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/60 (76%), Positives = 50/60 (83%)

Query: 3   KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           K + ANPCEHPIVILRDV+  D+E LL FMYNGEV IGQDQL +FLKTAQ LQVRGL DV
Sbjct: 56  KLLKANPCEHPIVILRDVRSEDIENLLRFMYNGEVHIGQDQLSDFLKTAQLLQVRGLADV 115

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328705255|ref|XP_001943263.2| PREDICTED: zinc finger and BTB domain-containing protein 34-like [Acyrthosiphon pisum]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/55 (80%), Positives = 50/55 (90%)

Query: 7   ANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTD 61
           ANPC+HPIVILRDVK+ +MEALLSFMYNGEVRI Q+ L EFLKTA++LQVRGL D
Sbjct: 66  ANPCQHPIVILRDVKKQEMEALLSFMYNGEVRINQEHLPEFLKTARSLQVRGLVD 120

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017435|ref|XP_003692661.1| PREDICTED: protein abrupt-like [Apis florea]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/60 (70%), Positives = 49/60 (81%)

Query: 3   KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           + + ANPC+HPIVILRDV   DME+LL FMY+GEV +GQ+QL  FLKTAQ LQVRGL DV
Sbjct: 66  RLLKANPCQHPIVILRDVASSDMESLLRFMYHGEVHVGQEQLAAFLKTAQMLQVRGLADV 125

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
FB|FBgn0264442	904	ab "abrupt" [Drosophila melano	0.789	0.066	0.666	6e-16
FB|FBgn0025525	1067	bab2 "bric a brac 2" [Drosophi	0.75	0.053	0.543	5.7e-13
FB|FBgn0022238	127	lolal "lola like" [Drosophila	0.736	0.440	0.535	3.1e-12
FB|FBgn0263108	798	BtbVII "BTB-protein-VII" [Dros	0.736	0.070	0.517	3.5e-12
FB|FBgn0004870	977	bab1 "bric a brac 1" [Drosophi	0.710	0.055	0.537	2.6e-11
FB|FBgn0000210	880	br "broad" [Drosophila melanog	0.855	0.073	0.461	2.9e-11
FB|FBgn0004652	955	fru "fruitless" [Drosophila me	0.710	0.056	0.592	3.2e-11
FB|FBgn0003870	813	ttk "tramtrack" [Drosophila me	0.736	0.068	0.517	1.5e-10
FB|FBgn0005630	970	lola "longitudinals lacking" [	0.671	0.052	0.529	1e-09
FB|FBgn0029822	553	CG12236 [Drosophila melanogast	0.697	0.095	0.471	4.3e-09

FB|FBgn0264442 ab "abrupt" [Drosophila melanogaster (taxid:7227)]

 Score = 211 (79.3 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 40/60 (66%), Positives = 48/60 (80%)

Query:     3 KYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
             + + ANPCEHPIVILRDV+  D+E LLSFMYNGEV +  +QL +FLKTA  LQ+RGL DV
Sbjct:   130 RLLKANPCEHPIVILRDVRCDDVENLLSFMYNGEVNVSHEQLPDFLKTAHLLQIRGLADV 189

GO:0016203 "muscle attachment" evidence=IMP

GO:0008039 "synaptic target recognition" evidence=IMP

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0007423 "sensory organ development" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0016198 "axon choice point recognition" evidence=TAS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0007517 "muscle organ development" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

FB|FBgn0025525 bab2 "bric a brac 2" [Drosophila melanogaster (taxid:7227)]

 Score = 184 (69.8 bits), Expect = 5.7e-13, P = 5.7e-13
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query:     6 YANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
             Y NPC+HPI+I+RDV   D++AL+ FMY GE+ + QDQ+   LK A+TL++RGL +V
Sbjct:   253 YDNPCQHPIIIMRDVSWSDLKALVEFMYKGEINVCQDQINPLLKVAETLKIRGLAEV 309

GO:0005515 "protein binding" evidence=IPI

GO:0006351 "transcription, DNA-dependent" evidence=IEP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0005634 "nucleus" evidence=IDA;TAS

GO:0007455 "eye-antennal disc morphogenesis" evidence=ISS

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0003677 "DNA binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0003680 "AT DNA binding" evidence=IDA

GO:0005701 "polytene chromosome chromocenter" evidence=IDA

FB|FBgn0022238 lolal "lola like" [Drosophila melanogaster (taxid:7227)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 30/56 (53%), Positives = 41/56 (73%)

Query:     8 NPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVP 63
             NP +HPI+IL+DV    ++A+L FMY GEV + Q+QL  FLKTA  L+V+GL + P
Sbjct:    65 NPSKHPIIILKDVSYIHLQAILEFMYAGEVNVSQEQLPAFLKTADRLKVKGLAETP 120

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006342 "chromatin silencing" evidence=IMP

GO:0016458 "gene silencing" evidence=IMP

GO:0031519 "PcG protein complex" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

FB|FBgn0263108 BtbVII "BTB-protein-VII" [Drosophila melanogaster (taxid:7227)]

 Score = 175 (66.7 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 29/56 (51%), Positives = 44/56 (78%)

Query:     8 NPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVP 63
             NPC+HPIVIL+DV+  D++ ++ FMY GEV + Q+QL   LKTA+ L+++GL ++P
Sbjct:    63 NPCQHPIVILKDVQYDDLKTMVDFMYYGEVNVSQEQLPHILKTAEMLKIKGLAEMP 118

GO:0003677 "DNA binding" evidence=IEA;NAS

FB|FBgn0004870 bab1 "bric a brac 1" [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 29/54 (53%), Positives = 41/54 (75%)

Query:     9 PCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
             PC+HPIVI+RDV   D++A++ FMY GE+ + QDQ+   L+ A+ L+VRGL DV
Sbjct:   160 PCQHPIVIMRDVNWSDLKAIVEFMYRGEINVSQDQIGPLLRIAEMLKVRGLADV 213

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006351 "transcription, DNA-dependent" evidence=IEP;ISS

GO:0007548 "sex differentiation" evidence=IGI;IMP;TAS

GO:0048071 "sex-specific pigmentation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048092 "negative regulation of male pigmentation" evidence=NAS

GO:0046660 "female sex differentiation" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IGI;IMP

GO:0008585 "female gonad development" evidence=IGI;IMP

GO:0007455 "eye-antennal disc morphogenesis" evidence=IEP

GO:0003677 "DNA binding" evidence=NAS

GO:0048070 "regulation of developmental pigmentation" evidence=TAS

GO:0048086 "negative regulation of developmental pigmentation" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0003680 "AT DNA binding" evidence=IDA

FB|FBgn0000210 br "broad" [Drosophila melanogaster (taxid:7227)]

 Score = 167 (63.8 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 30/65 (46%), Positives = 45/65 (69%)

Query:     7 ANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKD 66
             + PC+HP+++L+DV   D+ AL+ F+Y+GEV + Q  LQ FLKTA+ L+V GLT    +D
Sbjct:    63 STPCKHPVILLQDVNFMDLHALVEFIYHGEVNVHQKSLQSFLKTAEVLRVSGLTQQQAED 122

Query:    67 HYKFL 71
              +  L
Sbjct:   123 THSHL 127

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0000977 "RNA polymerase II regulatory region sequence-specific DNA binding" evidence=IDA

GO:0007458 "progression of morphogenetic furrow involved in compound eye morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IDA;NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0007552 "metamorphosis" evidence=NAS;TAS

GO:0035071 "salivary gland cell autophagic cell death" evidence=NAS

GO:0035070 "salivary gland histolysis" evidence=NAS;IMP

GO:0001752 "compound eye photoreceptor fate commitment" evidence=IMP

GO:0035072 "ecdysone-mediated induction of salivary gland cell autophagic cell death" evidence=NAS

GO:0006914 "autophagy" evidence=IMP

GO:0008219 "cell death" evidence=TAS

GO:0040034 "regulation of development, heterochronic" evidence=IMP;TAS

GO:0009608 "response to symbiont" evidence=IMP

GO:0035075 "response to ecdysone" evidence=IMP

GO:0035193 "larval central nervous system remodeling" evidence=IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0007562 "eclosion" evidence=IEP

GO:0071390 "cellular response to ecdysone" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0048747 "muscle fiber development" evidence=IGI

GO:0048477 "oogenesis" evidence=IMP

GO:0048808 "male genitalia morphogenesis" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

FB|FBgn0004652 fru "fruitless" [Drosophila melanogaster (taxid:7227)]

 Score = 167 (63.8 bits), Expect = 3.2e-11, P = 3.2e-11
 Identities = 32/54 (59%), Positives = 40/54 (74%)

Query:     8 NPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTD 61
             N   HPI+ L+DV+  +M +LL FMY GEV +GQ  L  FLKTA++LQVRGLTD
Sbjct:   163 NQHPHPIIYLKDVRYSEMRSLLDFMYKGEVNVGQSSLPMFLKTAESLQVRGLTD 216

GO:0016545 "male courtship behavior, veined wing vibration" evidence=IMP

GO:0008049 "male courtship behavior" evidence=NAS;IMP;TAS

GO:0007618 "mating" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS;TAS

GO:0045433 "male courtship behavior, veined wing generated song production" evidence=IMP;TAS

GO:0007517 "muscle organ development" evidence=IMP

GO:0007530 "sex determination" evidence=IMP;TAS

GO:0007275 "multicellular organismal development" evidence=IMP

GO:0005634 "nucleus" evidence=NAS

GO:0007617 "mating behavior" evidence=IMP

GO:0016543 "male courtship behavior, orientation prior to leg tapping and wing vibration" evidence=NAS

GO:0007620 "copulation" evidence=NAS;TAS

GO:0007417 "central nervous system development" evidence=IMP;TAS

GO:0046661 "male sex differentiation" evidence=TAS

GO:0048047 "mating behavior, sex discrimination" evidence=IGI;IMP;TAS

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0002118 "aggressive behavior" evidence=IMP

GO:0016199 "axon midline choice point recognition" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

FB|FBgn0003870 ttk "tramtrack" [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 29/56 (51%), Positives = 45/56 (80%)

Query:     7 ANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
             ++P +HPIVIL+DV   DM++LL FMY GEV + Q++L  FL+ A++L+++GLT+V
Sbjct:    64 SHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQERLTAFLRVAESLRIKGLTEV 119

GO:0000978 "RNA polymerase II core promoter proximal region sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0007422 "peripheral nervous system development" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0000980 "RNA polymerase II distal enhancer sequence-specific DNA binding" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0045467 "R7 cell development" evidence=IMP;TAS

GO:0005700 "polytene chromosome" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001709 "cell fate determination" evidence=TAS

GO:0017053 "transcriptional repressor complex" evidence=IPI

GO:0003682 "chromatin binding" evidence=IDA

GO:0001078 "RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0030707 "ovarian follicle cell development" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048666 "neuron development" evidence=IMP

GO:0035001 "dorsal trunk growth, open tracheal system" evidence=IMP

GO:0060446 "branching involved in open tracheal system development" evidence=IMP

GO:0016476 "regulation of embryonic cell shape" evidence=IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0040003 "chitin-based cuticle development" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0007426 "tracheal outgrowth, open tracheal system" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0048053 "R1/R6 development" evidence=IMP

GO:0048750 "compound eye corneal lens morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0005630 lola "longitudinals lacking" [Drosophila melanogaster (taxid:7227)]

 Score = 153 (58.9 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 27/51 (52%), Positives = 39/51 (76%)

Query:    11 EHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTD 61
             +HPI IL+DVK  ++ A++ +MY GEV I QDQL   LK A++LQ++GL+D
Sbjct:    67 KHPIFILKDVKYQELRAMMDYMYRGEVNISQDQLAALLKAAESLQIKGLSD 117

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0007411 "axon guidance" evidence=IGI;NAS;IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0007409 "axonogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0016199 "axon midline choice point recognition" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0045476 "nurse cell apoptotic process" evidence=IMP

GO:0045467 "R7 cell development" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

GO:0007464 "R3/R4 cell fate commitment" evidence=IMP

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0008406 "gonad development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

FB|FBgn0029822 CG12236 [Drosophila melanogaster (taxid:7227)]

 Score = 144 (55.7 bits), Expect = 4.3e-09, P = 4.3e-09
 Identities = 25/53 (47%), Positives = 38/53 (71%)

Query:     8 NPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLT 60
             NP  HP++I + +K  D+ +++ FMY GEV + Q+ LQ FL+TA+ L V+GLT
Sbjct:    64 NPHPHPVIIFKFIKFEDLNSIIEFMYQGEVNVQQEALQSFLQTAELLAVQGLT 116

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24174	ABRU_DROME	No assigned EC number	0.6666	0.7894	0.0663	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	76
smart00225	97	smart00225, BTB, Broad-Complex, Tramtrack and Bric	7e-09
pfam00651	101	pfam00651, BTB, BTB/POZ domain	7e-09

>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac

 Score = 47.7 bits (114), Expect = 7e-09
 Identities = 17/52 (32%), Positives = 32/52 (61%)

Query: 11 EHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
          +   + L DV   D  ALL+F+Y G++ + ++ ++E L+ A  LQ+ GL ++
Sbjct: 37 DKSEIYLDDVSPEDFRALLNFLYTGKLDLPEENVEELLELADYLQIPGLVEL 88

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97

>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain

 Score = 47.6 bits (114), Expect = 7e-09
 Identities = 18/49 (36%), Positives = 27/49 (55%)

Query: 14 IVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           + L DV   D EALL F+Y G++ I ++ + + L  A  LQ+  L D 
Sbjct: 47 EITLEDVSPEDFEALLEFIYTGKLEITEENVDDLLALADKLQIPALIDK 95

The BTB (for BR-C, ttk and bab) or POZ (for Pox virus and Zinc finger) domain is present near the N-terminus of a fraction of zinc finger (pfam00096) proteins and in proteins that contain the pfam01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT. The POZ or BTB domain is also known as BR-C/Ttk or ZiN. Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	76
PHA02790	480	Kelch-like protein; Provisional	99.81
KOG4441|consensus	571		99.78
PHA02713	557	hypothetical protein; Provisional	99.76
PHA03098	534	kelch-like protein; Provisional	99.7
PF00651	111	BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (	99.52
smart00225	90	BTB Broad-Complex, Tramtrack and Bric a brac. Doma	99.52
KOG4682|consensus	488		99.15
KOG2075|consensus	521		99.07
KOG4350|consensus	620		98.93
KOG4591|consensus	280		98.2
KOG1724|consensus	162		97.99
KOG2716|consensus	230		97.91
PF11822	317	DUF3342: Domain of unknown function (DUF3342); Int	97.81
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	97.76
smart00512	104	Skp1 Found in Skp1 protein family. Family of Skp1	97.73
KOG3473|consensus	112		97.5
KOG0783|consensus	1267		97.5
PF01466	78	Skp1: Skp1 family, dimerisation domain; InterPro:	97.12
KOG1665|consensus	302		96.5
PF03931	62	Skp1_POZ: Skp1 family, tetramerisation domain; Int	96.04
COG5201	158	SKP1 SCF ubiquitin ligase, SKP1 component [Posttra	95.9
KOG2714|consensus	465		95.47
KOG0511|consensus	516		95.05
KOG3840|consensus	438		93.32
KOG1987|consensus	297		92.4
KOG0783|consensus	1267		90.17
KOG2715|consensus	210		87.14
KOG2838|consensus	401		85.18
PF00356	46	LacI: Bacterial regulatory proteins, lacI family;	84.1
KOG2723|consensus	221		82.81

>PHA02790 Kelch-like protein; Provisional

Probab=99.81  E-value=7.2e-21  Score=130.18  Aligned_cols=74  Identities=12%  Similarity=0.139  Sum_probs=67.0

Q ss_pred             ChhhccC--CCCCCCeEEe--CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679          1 MMKYIYA--NPCEHPIVIL--RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK   75 (76)
Q Consensus         1 Fr~lf~~--~e~~~~~i~l--~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~   75 (76)
                      ||+||++  .|+++ .|.+  .++++++++.||+|+|||++.|+.+||+++++||++||+++++++|++||.+.+++.+
T Consensus        47 FraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~N  124 (480)
T PHA02790         47 FRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEY  124 (480)
T ss_pred             HHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcch
Confidence            8999988  35543 4554  4999999999999999999999999999999999999999999999999999999875

>KOG4441|consensus

Probab=99.78  E-value=1.1e-19  Score=126.64  Aligned_cols=75  Identities=23%  Similarity=0.348  Sum_probs=71.9

Q ss_pred             ChhhccC--CCCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679          1 MMKYIYA--NPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK   75 (76)
Q Consensus         1 Fr~lf~~--~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~   75 (76)
                      ||+||++  .|+.+.+|.+.++++.+++.+++|+|||++.|+.+||++++.||++|||+.+++.|++||.+++.+.+
T Consensus        62 FraMFt~~l~e~~~~~i~l~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~~~N  138 (571)
T KOG4441|consen   62 FRAMFTSGLKESKQKEINLEGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLDPSN  138 (571)
T ss_pred             HHHHhcCCcccccceEEEEecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCHHH
Confidence            8999997  58889999999999999999999999999999999999999999999999999999999999998764

>PHA02713 hypothetical protein; Provisional

Probab=99.76  E-value=4.9e-19  Score=123.10  Aligned_cols=73  Identities=15%  Similarity=0.158  Sum_probs=67.4

Q ss_pred             ChhhccCC--CC-CCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679          1 MMKYIYAN--PC-EHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK   75 (76)
Q Consensus         1 Fr~lf~~~--e~-~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~   75 (76)
                      ||+||++.  |+ .+++|.|+++++++++.+|+|+|||+  |+++||+++|.||++||++.+++.|++||.+++++.+
T Consensus        52 F~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~N  127 (557)
T PHA02713         52 FRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDT  127 (557)
T ss_pred             HHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccc
Confidence            89999884  44 47899999999999999999999997  6899999999999999999999999999999998865

>PHA03098 kelch-like protein; Provisional

Probab=99.70  E-value=1.4e-17  Score=114.49  Aligned_cols=73  Identities=15%  Similarity=0.247  Sum_probs=68.2

Q ss_pred             ChhhccCCCCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679          1 MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK   75 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~   75 (76)
                      ||+||++... +.+|.|++ ++++|+.+|+|+|||++.++.+++.+++.+|++||++.|++.|++++.+.+++++
T Consensus        37 F~~mf~~~~~-~~~i~l~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~n  109 (534)
T PHA03098         37 FKKMFKNNFK-ENEINLNI-DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNN  109 (534)
T ss_pred             HHHHHhCCCC-CceEEecC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhH
Confidence            7899988655 78899999 9999999999999999999999999999999999999999999999999988754

>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins

Probab=99.52  E-value=9.5e-15  Score=82.10  Aligned_cols=70  Identities=29%  Similarity=0.417  Sum_probs=62.1

Q ss_pred             ChhhccCC-CCCC--CeEEeCCCCHHHHHHHhhhHhcCccccC-HHhHHHHHHHHhhcCccchhhcChhhHHhh
Q psy12679          1 MMKYIYAN-PCEH--PIVILRDVKEHDMEALLSFMYNGEVRIG-QDQLQEFLKTAQTLQVRGLTDVPPKDHYKF   70 (76)
Q Consensus         1 Fr~lf~~~-e~~~--~~i~l~~v~~~~~~~ll~f~Ytg~l~i~-~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~   70 (76)
                      |+.||.+. ....  .+|.++++++++|+.+++|+|+|++.++ .+++.+++.+|++|+++.+++.|.+++.+.
T Consensus        37 F~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~  110 (111)
T PF00651_consen   37 FRNLFEGSKFKESTVPEISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKACEKFLQES  110 (111)
T ss_dssp             HHHHHTTTTSTTSSEEEEEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred             hhhcccccccccccccccccccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence            67788775 2332  3688999999999999999999999998 999999999999999999999999999764

The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....

>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac

Probab=99.52  E-value=2.6e-14  Score=76.52  Aligned_cols=64  Identities=27%  Similarity=0.493  Sum_probs=57.8

Q ss_pred             ChhhccCCCC--CCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcCh
Q psy12679          1 MMKYIYANPC--EHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPP   64 (76)
Q Consensus         1 Fr~lf~~~e~--~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~   64 (76)
                      |+.||.+...  ....+.++++++.+|+.+++|+|+|++.++.+++.+++.+|++|+++++.+.|+
T Consensus        25 f~~~~~~~~~~~~~~~i~l~~~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~   90 (90)
T smart00225       25 FKALFSGDFKESKKSEIYLDDVSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE   90 (90)
T ss_pred             HHHHHcCCCccCCCCEEEecCCCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence            5778876433  567899999999999999999999999999999999999999999999999985

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.

>KOG4682|consensus

Probab=99.15  E-value=4.6e-11  Score=80.65  Aligned_cols=75  Identities=17%  Similarity=0.225  Sum_probs=69.0

Q ss_pred             ChhhccC--CCCCCCeEEe----CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhc
Q psy12679          1 MMKYIYA--NPCEHPIVIL----RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNAR   74 (76)
Q Consensus         1 Fr~lf~~--~e~~~~~i~l----~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~   74 (76)
                      |++||.+  .|++...|.+    +.|+..++...+.-+|..++.|..+.|..++.||.++|++++.+.|.+-+++.++++
T Consensus        94 f~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspk  173 (488)
T KOG4682|consen   94 FKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPK  173 (488)
T ss_pred             HHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChh
Confidence            6889988  5777776665    579999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q psy12679         75 K   75 (76)
Q Consensus        75 ~   75 (76)
                      +
T Consensus       174 t  174 (488)
T KOG4682|consen  174 T  174 (488)
T ss_pred             h
Confidence            5

>KOG2075|consensus

Probab=99.07  E-value=1.3e-10  Score=79.59  Aligned_cols=74  Identities=26%  Similarity=0.250  Sum_probs=67.1

Q ss_pred             ChhhccCC--CCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhc
Q psy12679          1 MMKYIYAN--PCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNAR   74 (76)
Q Consensus         1 Fr~lf~~~--e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~   74 (76)
                      |.+||.+.  +....+|.+++|.+.+|..+|.|+|+..+.+..+++..++.+|+++-++.+.+.|.+++.+.+.+.
T Consensus       145 FdaMf~g~~a~~~s~ei~lpdvepaaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~  220 (521)
T KOG2075|consen  145 FDAMFYGGLAEDASLEIRLPDVEPAAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMAD  220 (521)
T ss_pred             HHHHhccCcccccCceeecCCcChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCh
Confidence            67788773  444679999999999999999999999999999999999999999999999999999998887653

>KOG4350|consensus

Probab=98.93  E-value=7.5e-10  Score=75.38  Aligned_cols=75  Identities=17%  Similarity=0.385  Sum_probs=66.7

Q ss_pred             ChhhccC--CCCCCCeEEeCCCCHHHHHHHhhhHhcCcccc---CHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679          1 MMKYIYA--NPCEHPIVILRDVKEHDMEALLSFMYNGEVRI---GQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK   75 (76)
Q Consensus         1 Fr~lf~~--~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i---~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~   75 (76)
                      ||+|+-+  .|+.+..|.|++-+.++|+.+|.|||||++.+   .++-..+.|..|.+++++++..+-.+|+.+.++-++
T Consensus        70 FRAlLYgGm~Es~q~~ipLq~t~~eAF~~lLrYiYtg~~~l~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~N  149 (620)
T KOG4350|consen   70 FRALLYGGMQESHQQLIPLQETNSEAFRALLRYIYTGKIDLAGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILKNEN  149 (620)
T ss_pred             HHHHHhhhhhhhhhcccccccccHHHHHHHHHHHhhcceecccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccc
Confidence            7888765  57888999999999999999999999999965   678888999999999999999999999998887654

>KOG4591|consensus

Probab=98.20  E-value=8.7e-07  Score=55.89  Aligned_cols=64  Identities=17%  Similarity=0.228  Sum_probs=54.5

Q ss_pred             CCeEEeCCCCHHHHHHHhhhHhcCccccC--HHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679         12 HPIVILRDVKEHDMEALLSFMYNGEVRIG--QDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK   75 (76)
Q Consensus        12 ~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~--~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~   75 (76)
                      ..+..+.+++++++...+.++||.++...  ..-+.++.+.|..+|+..+.+.|++-+-.-++.++
T Consensus       105 se~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~V~N  170 (280)
T KOG4591|consen  105 SEELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEKGLGALLHVDN  170 (280)
T ss_pred             hhhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHhh
Confidence            44667889999999999999999999874  45667899999999999999999988777666654

>KOG1724|consensus

Probab=97.99  E-value=1.4e-05  Score=48.63  Aligned_cols=59  Identities=17%  Similarity=0.311  Sum_probs=51.5

Q ss_pred             CeEEeCCCCHHHHHHHhhhHhcCcc-------------------------ccCHHhHHHHHHHHhhcCccchhhcChhhH
Q psy12679         13 PIVILRDVKEHDMEALLSFMYNGEV-------------------------RIGQDQLQEFLKTAQTLQVRGLTDVPPKDH   67 (76)
Q Consensus        13 ~~i~l~~v~~~~~~~ll~f~Ytg~l-------------------------~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l   67 (76)
                      ..|.|++|++.+|+.+++|++-.+-                         .++..++.+++.||++|+|++|.+.|++..
T Consensus        44 ~~IPl~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~v  123 (162)
T KOG1724|consen   44 DPIPLPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTV  123 (162)
T ss_pred             CccccCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence            4799999999999999999998552                         245679999999999999999999999988


Q ss_pred             Hhhh
Q psy12679         68 YKFL   71 (76)
Q Consensus        68 ~~~~   71 (76)
                      ...+
T Consensus       124 a~mi  127 (162)
T KOG1724|consen  124 ANMI  127 (162)
T ss_pred             HHHH
Confidence            7665

>KOG2716|consensus

Probab=97.91  E-value=1.7e-05  Score=50.62  Aligned_cols=69  Identities=17%  Similarity=0.392  Sum_probs=54.3

Q ss_pred             ChhhccCC---CC-CCCeEEeCCCCHHHHHHHhhhHhcCcccc--CHHhHHHHHHHHhhcCccchhhcChhhHHhh
Q psy12679          1 MMKYIYAN---PC-EHPIVILRDVKEHDMEALLSFMYNGEVRI--GQDQLQEFLKTAQTLQVRGLTDVPPKDHYKF   70 (76)
Q Consensus         1 Fr~lf~~~---e~-~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i--~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~   70 (76)
                      |++||.+.   +. ....|.|+ =||..|..||+||=.|.+.+  +..++.++++=|.+|.+.+|++.|...+...
T Consensus        30 fk~m~e~~i~~~~d~s~~IFID-RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~  104 (230)
T KOG2716|consen   30 FKTMLETDIPVEKDESGCIFID-RSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIARL  104 (230)
T ss_pred             HHHHhhcCCccccCCcCcEEec-CChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence            56777663   22 22346654 79999999999999888877  5567789999999999999999999876544

>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised

Probab=97.81  E-value=5.9e-06  Score=54.75  Aligned_cols=62  Identities=11%  Similarity=0.136  Sum_probs=54.8

Q ss_pred             CCeEEeC-CCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhh
Q psy12679         12 HPIVILR-DVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNA   73 (76)
Q Consensus        12 ~~~i~l~-~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~   73 (76)
                      .+.|.|. ..+..+|+=|++|+......++++||-.++-.|++|||++|++.|-.|+.+++++
T Consensus        44 ~~~idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~  106 (317)
T PF11822_consen   44 WEEIDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQMESLVEECLQYCHDHMSE  106 (317)
T ss_pred             CCCcceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHhHHH
Confidence            3445543 4789999999999999999999999999999999999999999999999888764

This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=97.76  E-value=3.8e-05  Score=42.20  Aligned_cols=52  Identities=19%  Similarity=0.275  Sum_probs=39.6

Q ss_pred             CCCeEEeCCCCHHHHHHHhhhHhc-CccccC-HHhHHHHHHHHhhcCccch-hhcC
Q psy12679         11 EHPIVILRDVKEHDMEALLSFMYN-GEVRIG-QDQLQEFLKTAQTLQVRGL-TDVP   63 (76)
Q Consensus        11 ~~~~i~l~~v~~~~~~~ll~f~Yt-g~l~i~-~~~v~~ll~aA~~lqi~~l-~~~C   63 (76)
                      ....+.+ |-+|..|+.||+|+-+ |.+..+ ...+..+++-|.+++++++ ++.|
T Consensus        40 ~~~~~fi-DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c   94 (94)
T PF02214_consen   40 DDGEYFI-DRDPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC   94 (94)
T ss_dssp             TTTEEEE-SS-HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred             ccceEEe-ccChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence            4556666 4799999999999999 677764 6788899999999999999 8887

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>smart00512 Skp1 Found in Skp1 protein family

Probab=97.73  E-value=7.8e-05  Score=41.90  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=37.4

Q ss_pred             CeEEeCCCCHHHHHHHhhhHhcCcc-------------------ccCHHhHHHHHHHHhhcCc
Q psy12679         13 PIVILRDVKEHDMEALLSFMYNGEV-------------------RIGQDQLQEFLKTAQTLQV   56 (76)
Q Consensus        13 ~~i~l~~v~~~~~~~ll~f~Ytg~l-------------------~i~~~~v~~ll~aA~~lqi   56 (76)
                      ..|.+++|++..++.+++|++-.+-                   .++.+.+.+++.||++|+|
T Consensus        42 ~~Ipl~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAnyL~I  104 (104)
T smart00512       42 NPIPLPNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI  104 (104)
T ss_pred             CCccCCCcCHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            5899999999999999999985421                   1677799999999999986

Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.

>KOG3473|consensus

Probab=97.50  E-value=0.0004  Score=39.12  Aligned_cols=54  Identities=22%  Similarity=0.369  Sum_probs=45.6

Q ss_pred             hhhccC----CCCCCCeEEeCCCCHHHHHHHhhhH-----hcCc------cccCHHhHHHHHHHHhhcC
Q psy12679          2 MKYIYA----NPCEHPIVILRDVKEHDMEALLSFM-----YNGE------VRIGQDQLQEFLKTAQTLQ   55 (76)
Q Consensus         2 r~lf~~----~e~~~~~i~l~~v~~~~~~~ll~f~-----Ytg~------l~i~~~~v~~ll~aA~~lq   55 (76)
                      |+||.+    .+...++|.++++.+..++.+.+|+     |++.      ..|+++-+.++|-||++|.
T Consensus        43 raml~gpg~~se~~~n~v~f~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Le  111 (112)
T KOG3473|consen   43 RAMLSGPGVFSEAEKNEVYFRDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLE  111 (112)
T ss_pred             HHHHcCCccccccccceEEeccchHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhc
Confidence            678875    2566789999999999999999887     7776      3679999999999999986

>KOG0783|consensus

Probab=97.50  E-value=5.2e-05  Score=55.95  Aligned_cols=75  Identities=19%  Similarity=0.269  Sum_probs=57.7

Q ss_pred             ChhhccCC--CCCCCeEEeCCCCHHHHHHHhhhHh-cCcccc-----CHHhHHHHHHHHhhcCccchhhcChhhHHhhhh
Q psy12679          1 MMKYIYAN--PCEHPIVILRDVKEHDMEALLSFMY-NGEVRI-----GQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLN   72 (76)
Q Consensus         1 Fr~lf~~~--e~~~~~i~l~~v~~~~~~~ll~f~Y-tg~l~i-----~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~   72 (76)
                      |.+||...  |+..-.+...-+.++.|+.+|+|+| +.++.+     ..+-+-+++..|+.|-|.+|+..|+..+...+|
T Consensus       737 F~smf~~~w~E~sS~t~~~~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~  816 (1267)
T KOG0783|consen  737 FSSMFQFVWMESSSITVNLSPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLN  816 (1267)
T ss_pred             HHHHHHHHHhhhccceeecCcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhc
Confidence            56777653  4444334444456999999999999 556654     556788899999999999999999999988887


Q ss_pred             hcC
Q psy12679         73 ARK   75 (76)
Q Consensus        73 ~~~   75 (76)
                      -++
T Consensus       817 lk~  819 (1267)
T KOG0783|consen  817 LKT  819 (1267)
T ss_pred             ccc
Confidence            654

>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=97.12  E-value=0.00037  Score=37.45  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=29.8

Q ss_pred             ccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhh
Q psy12679         38 RIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNA   73 (76)
Q Consensus        38 ~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~   73 (76)
                      .++.+.+.+++.||++|+|++|.+.|+.++...+.-
T Consensus        10 ~~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~g   45 (78)
T PF01466_consen   10 DVDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKG   45 (78)
T ss_dssp             -S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTT
T ss_pred             HcCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcC
Confidence            347789999999999999999999999999887754

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....

>KOG1665|consensus

Probab=96.50  E-value=0.0032  Score=40.61  Aligned_cols=63  Identities=16%  Similarity=0.220  Sum_probs=48.8

Q ss_pred             hhccCC----CCCCCeEEeCCCCHHHHHHHhhhHhcCcccc-CHHhHHHHHHHHhhcCccchhhcChh
Q psy12679          3 KYIYAN----PCEHPIVILRDVKEHDMEALLSFMYNGEVRI-GQDQLQEFLKTAQTLQVRGLTDVPPK   65 (76)
Q Consensus         3 ~lf~~~----e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i-~~~~v~~ll~aA~~lqi~~l~~~C~~   65 (76)
                      +||..+    +..+.--.+-|-+|.-|+.||+|+-.|++.. +.-++..+|+.|++|||-++++.-++
T Consensus        38 ~MF~~~g~~~~~d~kGa~lIDRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~  105 (302)
T KOG1665|consen   38 AMFSGRGAMCQEDKKGAVLIDRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED  105 (302)
T ss_pred             HHHccCCCccccccCceEEEccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence            577663    2223344555689999999999999999865 66789999999999999998876544

>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []

Probab=96.04  E-value=0.0085  Score=30.68  Aligned_cols=33  Identities=9%  Similarity=0.083  Sum_probs=23.3

Q ss_pred             hhhccCCCCCCCeEEeCCCCHHHHHHHhhhHhc
Q psy12679          2 MKYIYANPCEHPIVILRDVKEHDMEALLSFMYN   34 (76)
Q Consensus         2 r~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Yt   34 (76)
                      +.|+.+.......|.+++|++..++.+++|++-
T Consensus        27 ~~ml~~~~~~~~~Ipl~~v~~~~L~kViewc~~   59 (62)
T PF03931_consen   27 KNMLEDLGDEDEPIPLPNVSSRILKKVIEWCEH   59 (62)
T ss_dssp             HHHHHCTCCCGTEEEETTS-HHHHHHHHHHHHH
T ss_pred             HHHHhhhcccccccccCccCHHHHHHHHHHHHh
Confidence            455554222222799999999999999999974

It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....

>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.90  E-value=0.015  Score=34.50  Aligned_cols=60  Identities=17%  Similarity=0.177  Sum_probs=47.4

Q ss_pred             CeEEeCCCCHHHHHHHhhhHhcCcc-------------------------ccCHHhHHHHHHHHhhcCccchhhcChhhH
Q psy12679         13 PIVILRDVKEHDMEALLSFMYNGEV-------------------------RIGQDQLQEFLKTAQTLQVRGLTDVPPKDH   67 (76)
Q Consensus        13 ~~i~l~~v~~~~~~~ll~f~Ytg~l-------------------------~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l   67 (76)
                      -.+..++|...+|..+++|+-..+-                         .++.+.+.++.-||++|.++.|.+.||...
T Consensus        39 ~p~p~pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKiv  118 (158)
T COG5201          39 YPIPAPNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIV  118 (158)
T ss_pred             CCCcccchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHH
Confidence            3467789999999999999964432                         134556778999999999999999999887


Q ss_pred             Hhhhh
Q psy12679         68 YKFLN   72 (76)
Q Consensus        68 ~~~~~   72 (76)
                      ...+.
T Consensus       119 aemir  123 (158)
T COG5201         119 AEMIR  123 (158)
T ss_pred             HHHHc
Confidence            65543

>KOG2714|consensus

Probab=95.47  E-value=0.019  Score=39.91  Aligned_cols=46  Identities=13%  Similarity=0.217  Sum_probs=39.3

Q ss_pred             EEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHH-HHhhcCccchhh
Q psy12679         15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLK-TAQTLQVRGLTD   61 (76)
Q Consensus        15 i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~-aA~~lqi~~l~~   61 (76)
                      |.| |=+|+.|..||+|+=||++.++.-....++. =|.+|++.++++
T Consensus        56 iFI-DRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA~fYGl~~llr  102 (465)
T KOG2714|consen   56 IFI-DRDPDLFAVILNLLRTGDLDASGVFPERLLHDEAMFYGLTPLLR  102 (465)
T ss_pred             eEe-cCCchHHHHHHHHHhcCCCCCccCchhhhhhhhhhhcCcHHHHH
Confidence            444 4799999999999999999997766666666 999999999887

>KOG0511|consensus

Probab=95.05  E-value=0.025  Score=39.11  Aligned_cols=57  Identities=18%  Similarity=0.180  Sum_probs=46.8

Q ss_pred             ChhhccCC--CCC----CCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679          1 MMKYIYAN--PCE----HPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVR   57 (76)
Q Consensus         1 Fr~lf~~~--e~~----~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~   57 (76)
                      |+.||.++  ++.    .+...+++....+.+.++.|+|+.+..+.++-..+++-.|+++.+.
T Consensus       316 fk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~  378 (516)
T KOG0511|consen  316 FKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALA  378 (516)
T ss_pred             HHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhh
Confidence            67888773  321    2345677888999999999999999999999999999999998765

>KOG3840|consensus

Probab=93.32  E-value=0.085  Score=35.65  Aligned_cols=47  Identities=15%  Similarity=0.176  Sum_probs=38.4

Q ss_pred             CCeEEe-CCCCHHHHHHHhhhHhcCccccC-HHhHHHHHHHHhhcCccc
Q psy12679         12 HPIVIL-RDVKEHDMEALLSFMYNGEVRIG-QDQLQEFLKTAQTLQVRG   58 (76)
Q Consensus        12 ~~~i~l-~~v~~~~~~~ll~f~Ytg~l~i~-~~~v~~ll~aA~~lqi~~   58 (76)
                      ..+..+ .|++..+|+.||+|--||.+.-+ .-.|.++-+|+++|-|+.
T Consensus       138 rgEyeVAdGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLlipF  186 (438)
T KOG3840|consen  138 RDEFEVADGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLVPF  186 (438)
T ss_pred             CCceehhcchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEeec
Confidence            345554 68999999999999999998754 357899999999998764

>KOG1987|consensus

Probab=92.40  E-value=0.06  Score=34.93  Aligned_cols=61  Identities=16%  Similarity=0.077  Sum_probs=50.4

Q ss_pred             CeEEeCCCCHHHHHHHhhhHhcCccccCHHhHH---HHHHHHhhcCccchhhcChhhHHhhhhh
Q psy12679         13 PIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQ---EFLKTAQTLQVRGLTDVPPKDHYKFLNA   73 (76)
Q Consensus        13 ~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~---~ll~aA~~lqi~~l~~~C~~~l~~~~~~   73 (76)
                      ..+.+.+.+++.++.+..|.|+..-.-..+.+.   ..+.+|..++.+.+...|...+...++.
T Consensus       140 ~~~~~~d~~~~~~~~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~  203 (297)
T KOG1987|consen  140 KLITLLEEKPEVLEALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIET  203 (297)
T ss_pred             ccccccccchhhHhhhceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHh
Confidence            344677899999999999999987666666665   8899999999999999999988776543

>KOG0783|consensus

Probab=90.17  E-value=0.45  Score=36.22  Aligned_cols=52  Identities=15%  Similarity=0.314  Sum_probs=36.4

Q ss_pred             CCCeEEeCCCCHHHHHHHhhhHhcCccc--------------cCHHhHHH-------HHHHHhhcCccchhhc
Q psy12679         11 EHPIVILRDVKEHDMEALLSFMYNGEVR--------------IGQDQLQE-------FLKTAQTLQVRGLTDV   62 (76)
Q Consensus        11 ~~~~i~l~~v~~~~~~~ll~f~Ytg~l~--------------i~~~~v~~-------ll~aA~~lqi~~l~~~   62 (76)
                      ....|.+.++.|..|+.||+|+||..+-              +-++|...       +...+.++++..+...
T Consensus       608 ~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~el~~~  680 (1267)
T KOG0783|consen  608 SHSTIRVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAELLPF  680 (1267)
T ss_pred             cCceeeeccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHhhhhh
Confidence            3457778999999999999999999542              22334444       6666677766665543

>KOG2715|consensus

Probab=87.14  E-value=0.46  Score=29.56  Aligned_cols=55  Identities=13%  Similarity=0.163  Sum_probs=45.8

Q ss_pred             EEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHh
Q psy12679         15 VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYK   69 (76)
Q Consensus        15 i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~   69 (76)
                      -.+-|-+|.-|.-+|+|+-.|++.++.-.-+.+|+-|.++.++++++.-.+.+.+
T Consensus        66 AYlIDRDP~~FgpvLNylRhgklvl~~l~eeGvL~EAefyn~~~li~likd~i~d  120 (210)
T KOG2715|consen   66 AYLIDRDPFYFGPVLNYLRHGKLVLNKLSEEGVLEEAEFYNDPSLIQLIKDRIQD  120 (210)
T ss_pred             ceEeccCcchHHHHHHHHhcchhhhhhhhhhccchhhhccCChHHHHHHHHHHHH
Confidence            3455678999999999999999999996667799999999999888776655543

>KOG2838|consensus

Probab=85.18  E-value=0.45  Score=31.89  Aligned_cols=64  Identities=13%  Similarity=0.161  Sum_probs=47.0

Q ss_pred             CCeEEeCC-CCHHHHH-HHhhhHhcCccccC----------------------------HHhHHHHHHHHhhcCccchhh
Q psy12679         12 HPIVILRD-VKEHDME-ALLSFMYNGEVRIG----------------------------QDQLQEFLKTAQTLQVRGLTD   61 (76)
Q Consensus        12 ~~~i~l~~-v~~~~~~-~ll~f~Ytg~l~i~----------------------------~~~v~~ll~aA~~lqi~~l~~   61 (76)
                      ..+|.+.+ |-|..+. .++.|+||..+.++                            .....++++.|.+|.+..+++
T Consensus       299 PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~qaaeAleL~~IAlFfEfemLaQ  378 (401)
T KOG2838|consen  299 PKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDLQAAEALELIEIALFFEFEMLAQ  378 (401)
T ss_pred             CceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            34566544 5566665 47899999988542                            134567889999999999999


Q ss_pred             cChhhHHhhhhhcC
Q psy12679         62 VPPKDHYKFLNARK   75 (76)
Q Consensus        62 ~C~~~l~~~~~~~~   75 (76)
                      +|+.-+.+...+++
T Consensus       379 a~e~Vir~acaadl  392 (401)
T KOG2838|consen  379 ACEDVIRKACAADL  392 (401)
T ss_pred             HHHHHHHhhhhhhc
Confidence            99998888776653

>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=84.10  E-value=3.4  Score=19.86  Aligned_cols=35  Identities=20%  Similarity=0.396  Sum_probs=29.3

Q ss_pred             CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCc
Q psy12679         18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQV   56 (76)
Q Consensus        18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi   56 (76)
                      -|++...+..+|+    |.-.++++..+.++++|..++-
T Consensus         9 agvS~~TVSr~ln----~~~~vs~~tr~rI~~~a~~lgY   43 (46)
T PF00356_consen    9 AGVSKSTVSRVLN----GPPRVSEETRERILEAAEELGY   43 (46)
T ss_dssp             HTSSHHHHHHHHT----TCSSSTHHHHHHHHHHHHHHTB
T ss_pred             HCcCHHHHHHHHh----CCCCCCHHHHHHHHHHHHHHCC
Confidence            4678888777666    7789999999999999998875

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....

>KOG2723|consensus

Probab=82.81  E-value=1.6  Score=28.03  Aligned_cols=49  Identities=6%  Similarity=0.158  Sum_probs=39.3

Q ss_pred             eEEeCCCCHHHHHHHhhhHhcCccccCH--HhHHHHHHHHhhcCccchhhcC
Q psy12679         14 IVILRDVKEHDMEALLSFMYNGEVRIGQ--DQLQEFLKTAQTLQVRGLTDVP   63 (76)
Q Consensus        14 ~i~l~~v~~~~~~~ll~f~Ytg~l~i~~--~~v~~ll~aA~~lqi~~l~~~C   63 (76)
                      ...|. =+...|+.+++|+=|..+.+++  .++..+.+-|++++++.....+
T Consensus        52 ~~fID-RDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l  102 (221)
T KOG2723|consen   52 RYFID-RDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYL  102 (221)
T ss_pred             cEEEc-CCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHH
Confidence            44443 4677999999999997777777  7889999999999999766543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	6e-08
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	6e-08
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	8e-08
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	9e-08
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	1e-07
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	1e-07
2vpk_A	116	Myoneurin; transcription regulation, transcription	1e-07
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	1e-07
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	2e-07
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	2e-07
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	3e-07
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	4e-07
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	5e-07
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	5e-07
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	1e-06
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	5e-06
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	5e-05
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	5e-05
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	2e-04
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	2e-04

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124

 Score = 45.3 bits (108), Expect = 6e-08
 Identities = 11/53 (20%), Positives = 23/53 (43%)

Query: 10  CEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
            E  I +  +V     E L+ F Y  ++ + ++ + E  K  + L V  + + 
Sbjct: 65  GELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEES 117

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135

 Score = 45.3 bits (108), Expect = 6e-08
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 15  VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           V+L          LL F Y G + +      + L  A+ L+V    ++
Sbjct: 63  VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVEL 110

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138

 Score = 45.0 bits (107), Expect = 8e-08
 Identities = 10/53 (18%), Positives = 23/53 (43%)

Query: 10  CEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
            E  + +  +V     E L+ F Y  ++ + +D + E  +  + L V  + + 
Sbjct: 72  AELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEES 124

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127

 Score = 44.5 bits (106), Expect = 9e-08
 Identities = 11/49 (22%), Positives = 21/49 (42%)

Query: 14  IVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           I +  ++       LL FMY   + + +  +   + TA  LQ+  + D 
Sbjct: 70  INLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 118

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120

 Score = 44.5 bits (106), Expect = 1e-07
 Identities = 9/53 (16%), Positives = 23/53 (43%)

Query: 10  CEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
            +  +  +  V    + AL+ F Y   + +    + + L  A+ L++  ++ V
Sbjct: 62  DQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHV 114

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119

 Score = 44.2 bits (105), Expect = 1e-07
 Identities = 10/48 (20%), Positives = 21/48 (43%)

Query: 15  VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
            +   +       LL+F+Y   V +   +L+   + A+ L V+ L + 
Sbjct: 63  ALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEA 110

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116

 Score = 44.1 bits (105), Expect = 1e-07
 Identities = 11/52 (21%), Positives = 22/52 (42%)

Query: 11  EHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
            +  +    VK    + LL F+Y G + +    ++E  + A  L+V  +   
Sbjct: 58  NNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTK 109

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119

 Score = 44.2 bits (105), Expect = 1e-07
 Identities = 10/49 (20%), Positives = 22/49 (44%)

Query: 14  IVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           +V L       +  +L FMY  ++ +  + + + L  A  LQ++ +   
Sbjct: 63  VVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITA 111

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125

 Score = 43.8 bits (104), Expect = 2e-07
 Identities = 10/49 (20%), Positives = 25/49 (51%)

Query: 14  IVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           + +  +V       LL F Y  ++ + ++ ++E ++ A+ L++  L D 
Sbjct: 72  VSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDS 120

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119

 Score = 43.8 bits (104), Expect = 2e-07
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 15  VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           V+L          LL F Y G + +      + L  A+ L+V    ++
Sbjct: 62  VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVEL 109

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144

 Score = 43.8 bits (104), Expect = 3e-07
 Identities = 10/48 (20%), Positives = 27/48 (56%)

Query: 15  VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           + L  +    M  +L ++++G++R+ +D +Q+ ++ A  L +  L  +
Sbjct: 91  IELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTL 138

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121

 Score = 42.6 bits (101), Expect = 4e-07
 Identities = 8/48 (16%), Positives = 20/48 (41%)

Query: 15  VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
             L  +     + +L + Y   ++   + L + L  A+ L++  L + 
Sbjct: 65  YTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQ 112

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129

 Score = 42.6 bits (101), Expect = 5e-07
 Identities = 10/49 (20%), Positives = 22/49 (44%)

Query: 14  IVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           + +   V+    + +LSF Y G + +        + TA  LQ++ + + 
Sbjct: 71  VELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEK 119

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256

 Score = 43.7 bits (104), Expect = 5e-07
 Identities = 10/48 (20%), Positives = 27/48 (56%)

Query: 15  VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           + L  +    M  +L ++++G++R+ +D +Q+ ++ A  L +  L  +
Sbjct: 75  IELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTL 122

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116

 Score = 41.5 bits (98), Expect = 1e-06
 Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 14  IVILRDVKEHDMEALLSFMYNGE-VRIGQDQLQEFLKTAQTLQVRGLTDV 62
           +V L  ++      +L+++Y+ + VR+  D L E +K+ Q L V+ +  +
Sbjct: 67  VVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAAL 116

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109

 Score = 39.9 bits (94), Expect = 5e-06
 Identities = 12/48 (25%), Positives = 21/48 (43%)

Query: 15  VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           + + DV+      LL +MY+ E+ +  D +   L  A+   V  L   
Sbjct: 53  IHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKA 100

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279

 Score = 38.4 bits (90), Expect = 5e-05
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 15  VILRDVKEHD------MEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           V +R            +EA++ +MY G +R+    + E L+ A    +  L + 
Sbjct: 77  VEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEF 130

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312

 Score = 38.3 bits (89), Expect = 5e-05
 Identities = 9/48 (18%), Positives = 19/48 (39%)

Query: 15  VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
           V + DV+    + ++ F+Y G+         + L  A    +  L  +
Sbjct: 216 VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVM 263

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145

 Score = 36.0 bits (84), Expect = 2e-04
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 15  VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGL 59
           V + DV+    + ++ F+Y G+         + L  A    +  L
Sbjct: 67  VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 111

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172

 Score = 36.1 bits (84), Expect = 2e-04
 Identities = 9/45 (20%), Positives = 18/45 (40%)

Query: 15  VILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGL 59
           V + DV+    + ++ F+Y G+         + L  A    +  L
Sbjct: 76  VEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERL 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
2z8h_A	138	Transcription regulator protein BACH1; BTB, POZ, d	99.79
2vkp_A	109	BTB/POZ domain-containing protein 6; protein-bindi	99.78
3ga1_A	129	Nucleus accumbens-associated protein 1; BTB/POZ do	99.77
3ohu_A	125	Transcription regulator protein BACH2; BTB/POZ dom	99.77
3b84_A	119	Zinc finger and BTB domain-containing protein 48;	99.76
2if5_A	120	Zinc finger and BTB domain-containing protein 7A;	99.76
2yy9_A	135	Zinc finger and BTB domain-containing protein 48;	99.75
1buo_A	121	POZ domain, protein (promyelocytic leukemia zinc f	99.75
2vpk_A	116	Myoneurin; transcription regulation, transcription	99.75
1r29_A	127	B-cell lymphoma 6 protein; BTB domain, transcripti	99.74
2ihc_A	124	Transcription regulator protein BACH1; BRIC-A-BRAC	99.74
2ppi_A	144	Gigaxonin; BTB domain, protein degradation, struct	99.73
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	99.73
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	99.72
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	99.72
4eoz_A	145	Speckle-type POZ protein; E3 ubiquitin ligase, nuc	99.71
2q81_A	119	MIZ-1 protein; BTB/POZ domain, transcription; HET:	99.7
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	99.67
3m5b_A	119	Zinc finger and BTB domain-containing protein 32;	99.65
2ast_A	159	S-phase kinase-associated protein 1A; SCF-substrat	99.6
3fkc_A	116	Transcriptional regulator kaiso; zinc finger and B	99.59
1fs1_B	141	SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le	99.39
2p1m_A	160	SKP1-like protein 1A; F-BOX, leucine rich repeat,	99.32
4ajy_C	97	Transcription elongation factor B polypeptide 1; E	99.15
3v7d_A	169	Suppressor of kinetochore protein 1; WD 40 domain,	98.77
2fnj_C	96	Transcription elongation factor B polypeptide 1; b	98.46
1hv2_A	99	Elongin C, ELC1; protein-peptide complex, signalin	98.42
3drz_A	107	BTB/POZ domain-containing protein KCTD5; potassium	98.35
1vcb_B	112	Protein (elongin C); tumor suppressor, cancer, ubi	98.15
3drx_A	202	BTB/POZ domain-containing protein KCTD5; golgi, gr	97.56
1s1g_A	124	Potassium voltage-gated channel subfamily D membe;	97.42
2nz0_B	140	Potassium voltage-gated channel subfamily D membe;	97.29
1nn7_A	105	Potassium channel KV4.2; teteramerization domain,	96.99
3kvt_A	115	Potassium channel protein SHAW; tetramerization do	96.84
1t1d_A	100	Protein (potassium channel KV1.1); potassium chann	96.01
2eqx_A	105	Kelch repeat and BTB domain-containing protein 4;	93.81
3htm_A	172	Speckle-type POZ protein; BTB, SPOP, ubiquitin, li	92.01
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	90.85
3hqi_A	312	Speckle-type POZ protein; SPOP, ubiquitin, puckere	89.98
1uxc_A	65	FRUR (1-57), fructose repressor; DNA-binding prote	83.53
3i3n_A	279	Kelch-like protein 11; structural genomics, BTB, K	81.32
3hve_A	256	Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis	81.1

>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}

Probab=99.79  E-value=5.6e-20  Score=107.09  Aligned_cols=75  Identities=16%  Similarity=0.198  Sum_probs=69.0

Q ss_pred             ChhhccCCCCCCCeEEeC-CCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679          1 MMKYIYANPCEHPIVILR-DVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK   75 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~-~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~   75 (76)
                      ||+||.+.......|.++ ++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.+++.|++++.+.+++.+
T Consensus        62 F~~~f~~~~~e~~~i~l~~~v~~~~~~~lL~~~Ytg~~~i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~sn  137 (138)
T 2z8h_A           62 FHSRIVGQTDAELTVTLPEEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDST  137 (138)
T ss_dssp             HHHHHTTCCCTTEEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSCCC
T ss_pred             HHHHHhcCCCCCceEEeCCCCCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccccc
Confidence            788998765555689995 999999999999999999999999999999999999999999999999999998765

>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}

Probab=99.78  E-value=1.3e-19  Score=101.44  Aligned_cols=70  Identities=20%  Similarity=0.274  Sum_probs=62.7

Q ss_pred             ChhhccCC--CCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhh
Q psy12679          1 MMKYIYAN--PCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFL   71 (76)
Q Consensus         1 Fr~lf~~~--e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~   71 (76)
                      |++||.+.  ++. ..|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.+++.|++++.+.+
T Consensus        38 F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~l  109 (109)
T 2vkp_A           38 FYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETSL  109 (109)
T ss_dssp             HHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC
Confidence            78899873  445 89999999999999999999999999999999999999999999999999999998764

>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}

Probab=99.77  E-value=1.6e-19  Score=104.03  Aligned_cols=70  Identities=19%  Similarity=0.302  Sum_probs=56.5

Q ss_pred             ChhhccCCCCCCCeEEeC-CCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhh
Q psy12679          1 MMKYIYANPCEHPIVILR-DVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLN   72 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~-~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~   72 (76)
                      ||+||.+.  ...+|.++ ++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.+++.|++++.+..|
T Consensus        59 F~~~f~~~--~~~~i~l~~~~~~~~f~~ll~~iYtg~~~i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~~~S  129 (129)
T 3ga1_A           59 FRDLFNNS--RSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLKVSS  129 (129)
T ss_dssp             HHHHHHHC--CCSEEECCTTCCHHHHHHHHHHHHHSEEECCTTTHHHHHHHHHHTTBTTSSCC----------
T ss_pred             HHHHHcCC--CCCEEEECCCCCHHHHHHHHHHHhCCccccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcC
Confidence            68888765  66799996 999999999999999999999999999999999999999999999999987654

>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A

Probab=99.77  E-value=3.4e-19  Score=102.01  Aligned_cols=67  Identities=18%  Similarity=0.322  Sum_probs=62.5

Q ss_pred             ChhhccCCCCCCCeEEeCC-CCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhH
Q psy12679          1 MMKYIYANPCEHPIVILRD-VKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDH   67 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~~-v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l   67 (76)
                      ||+||.+.......|.+++ +++++|+.+|+|+|||++.++.+++.+++.+|++|+++.+++.|+++|
T Consensus        58 F~~~f~~~~~e~~~i~l~~~~~~~~f~~~l~~iYtg~~~~~~~~v~~ll~~A~~l~i~~L~~~C~~~L  125 (125)
T 3ohu_A           58 FWQALVGQTKNDLVVSLPEEVTARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL  125 (125)
T ss_dssp             HHHHHTTCCCSSCEEECCTTCCHHHHHHHHHHHTTSEEEECTTTHHHHHHHHHHHTBSSCTTSSCCCC
T ss_pred             HHHHhcCCCCCCcEEEeCCCCCHHHHHHHHHhHcCCceEECHHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence            7889988655578999998 999999999999999999999999999999999999999999999875

>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}

Probab=99.76  E-value=1.7e-19  Score=102.84  Aligned_cols=68  Identities=18%  Similarity=0.173  Sum_probs=61.2

Q ss_pred             ChhhccCCCCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhh
Q psy12679          1 MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKF   70 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~   70 (76)
                      ||+||.+..  ...|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|++++.+.
T Consensus        50 F~~~f~~~~--~~~i~l~~~~~~~f~~ll~~iYtg~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~  117 (119)
T 3b84_A           50 FQSLYGDGS--GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPKT  117 (119)
T ss_dssp             HHHHHTTTT--CCCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCC---
T ss_pred             HHHHHCCCC--CCeEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHc
Confidence            688887654  67899999999999999999999999999999999999999999999999999999764

>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A

Probab=99.76  E-value=5.5e-19  Score=100.45  Aligned_cols=67  Identities=15%  Similarity=0.270  Sum_probs=61.2

Q ss_pred             ChhhccCC--CCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhH
Q psy12679          1 MMKYIYAN--PCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDH   67 (76)
Q Consensus         1 Fr~lf~~~--e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l   67 (76)
                      |++||.+.  ++....|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|++++
T Consensus        51 F~~~f~~~~~e~~~~~i~l~~~~~~~f~~ll~~~Yt~~~~~~~~~~~~ll~~A~~~~i~~L~~~C~~~L  119 (120)
T 2if5_A           51 FKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL  119 (120)
T ss_dssp             HHHHHHC-----CCSEEECCSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhcCCccccCCceEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            78899873  56678999999999999999999999999999999999999999999999999999987

>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}

Probab=99.75  E-value=1.8e-19  Score=104.74  Aligned_cols=72  Identities=15%  Similarity=0.156  Sum_probs=59.9

Q ss_pred             ChhhccCCCCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhc
Q psy12679          1 MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNAR   74 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~   74 (76)
                      ||+||.+..  ...|.|+++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.+++.|++++.+.+..+
T Consensus        51 F~~mf~~~~--~~~i~l~~~~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~  122 (135)
T 2yy9_A           51 FQRIYGDGT--GGSVVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQ  122 (135)
T ss_dssp             HHHTCC------CCEEECGGGHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHCCC------
T ss_pred             HHHHHcCCC--CCeEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCC
Confidence            788887643  568999999999999999999999999999999999999999999999999999998877643

>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A

Probab=99.75  E-value=1.1e-18  Score=99.52  Aligned_cols=67  Identities=15%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             ChhhccCCCCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhh
Q psy12679          1 MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKF   70 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~   70 (76)
                      |++||.++   ...|.++++++++|+.+|+|+|||++.++++++.+++.+|++|+++++++.|++++.+.
T Consensus        54 F~~~f~~~---~~~i~l~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~  120 (121)
T 1buo_A           54 FEILFHRN---SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLETI  120 (121)
T ss_dssp             HHHHTTSC---CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCC---CcEEEeCCCCHHHHHHHHHhhcCCCcCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence            68888763   56899999999999999999999999999999999999999999999999999999764

>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}

Probab=99.75  E-value=7.2e-19  Score=99.55  Aligned_cols=67  Identities=19%  Similarity=0.273  Sum_probs=61.1

Q ss_pred             ChhhccCCCCCCCeEEeC--CCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHh
Q psy12679          1 MMKYIYANPCEHPIVILR--DVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYK   69 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~--~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~   69 (76)
                      |++||.+.  ....|.|+  ++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.+++.|++++.+
T Consensus        48 F~~~f~~~--~~~~i~l~~~~~~~~~f~~ll~~~Yt~~~~~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~  116 (116)
T 2vpk_A           48 FGAIYRST--SENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMED  116 (116)
T ss_dssp             HHHHHTTC--CCSCEECCTTTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHHcCC--CCCeEEeecCCCCHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHhCCHHHHHHHHHHHhC
Confidence            78889875  46678888  999999999999999999999999999999999999999999999999853

>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A

Probab=99.74  E-value=1.4e-18  Score=99.69  Aligned_cols=69  Identities=17%  Similarity=0.266  Sum_probs=63.6

Q ss_pred             ChhhccCCCC-CCCeEEe-CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHh
Q psy12679          1 MMKYIYANPC-EHPIVIL-RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYK   69 (76)
Q Consensus         1 Fr~lf~~~e~-~~~~i~l-~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~   69 (76)
                      |++||.+... ....|.| +++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.+++.|++++.+
T Consensus        55 F~~~f~~~~~e~~~~i~l~~~~~~~~f~~ll~~~Ytg~~~~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~  125 (127)
T 1r29_A           55 FYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA  125 (127)
T ss_dssp             HHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHhcCCccCCCCEEEeCCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            7889987422 6789999 9999999999999999999999999999999999999999999999999975

>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}

Probab=99.74  E-value=8.9e-19  Score=100.40  Aligned_cols=68  Identities=16%  Similarity=0.241  Sum_probs=60.1

Q ss_pred             ChhhccCCCCCCCeEEe-CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHH
Q psy12679          1 MMKYIYANPCEHPIVIL-RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHY   68 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l-~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~   68 (76)
                      |++||.+.......|.+ .++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.+++.|++++.
T Consensus        55 F~~mf~~~~~e~~~i~l~~~v~~~~f~~lL~~iYtg~~~i~~~~v~~ll~~A~~~~~~~L~~~C~~~l~  123 (124)
T 2ihc_A           55 FHSRIVGQADGELNITLPEEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK  123 (124)
T ss_dssp             HHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHHTBSSCCGGGGGTC-
T ss_pred             HHHHHcCCCCCCceEeecCCcCHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHCCHHHHHHHHHHHh
Confidence            78899876545568899 599999999999999999999999999999999999999999999999874

>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}

Probab=99.73  E-value=1.2e-18  Score=102.34  Aligned_cols=68  Identities=16%  Similarity=0.282  Sum_probs=61.3

Q ss_pred             ChhhccCC----CCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHH
Q psy12679          1 MMKYIYAN----PCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHY   68 (76)
Q Consensus         1 Fr~lf~~~----e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~   68 (76)
                      ||+||.+.    ++....|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|+++|.
T Consensus        73 F~~mf~~~~~e~e~~~~~I~l~~v~~~~f~~lL~fiYtg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~  144 (144)
T 2ppi_A           73 IRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE  144 (144)
T ss_dssp             HHHHHHHCC-----CCCEEECCSSCHHHHHHHHHHHTTSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHTTC-
T ss_pred             HHHHHcCCCccccCCCcEEEeCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHhC
Confidence            78899763    256789999999999999999999999999999999999999999999999999999873

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=99.73  E-value=1.9e-18  Score=108.75  Aligned_cols=75  Identities=16%  Similarity=0.274  Sum_probs=64.3

Q ss_pred             ChhhccCC----CCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679          1 MMKYIYAN----PCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK   75 (76)
Q Consensus         1 Fr~lf~~~----e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~   75 (76)
                      |++||.++    ++....|.++++++++|+.+++|+|||++.++.+++.+++.+|++|+++.+++.|++++.+.+++++
T Consensus        57 F~~mf~~~~~~~e~~~~~i~l~~v~~~~f~~ll~~~Yt~~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n  135 (256)
T 3hve_A           57 IRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAEN  135 (256)
T ss_dssp             HHHTC-----------CEEECSSCCHHHHHHHHHHHHHSCCCCC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSST
T ss_pred             HHHHhCCCCCcccCCCCeEEeCCCCHHHHHHHHhhccCCCCcccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhh
Confidence            78999763    4567899999999999999999999999999999999999999999999999999999999988764

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=99.72  E-value=2.4e-18  Score=102.43  Aligned_cols=75  Identities=13%  Similarity=0.206  Sum_probs=69.3

Q ss_pred             ChhhccCC--CCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679          1 MMKYIYAN--PCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK   75 (76)
Q Consensus         1 Fr~lf~~~--e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~   75 (76)
                      ||+||.+.  ++....|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.+++.|++++.+.++.++
T Consensus        60 F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~l~~~Yt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n  136 (172)
T 3htm_A           60 FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVEN  136 (172)
T ss_dssp             HHHHHHSCCCGGGTTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTT
T ss_pred             HHHHHccCccccCCCeEEecCCCHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHH
Confidence            78899873  5567899999999999999999999999999999999999999999999999999999999887754

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=99.72  E-value=3.3e-18  Score=108.83  Aligned_cols=75  Identities=19%  Similarity=0.297  Sum_probs=66.0

Q ss_pred             ChhhccCC--CCCCCeEEeC------CCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhh
Q psy12679          1 MMKYIYAN--PCEHPIVILR------DVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLN   72 (76)
Q Consensus         1 Fr~lf~~~--e~~~~~i~l~------~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~   72 (76)
                      ||+||.++  |+....|.++      ++++++|+.+++|+|||++.++.+++.+++.+|++|+++.+++.|++++.+.++
T Consensus        61 F~~mf~~~~~e~~~~~i~l~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~  140 (279)
T 3i3n_A           61 FTPLLSGQFSESRSGRVEMRKWSSEPGPEPDTVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLH  140 (279)
T ss_dssp             SGGGCCC--------EEECCCCSSTTCSCHHHHHHHHHHHHHSEEEEETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHhcCCCccccCCeEEeccccccCCCCHHHHHHHHHhhCcCCcccCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCC
Confidence            89999874  6677899998      999999999999999999999999999999999999999999999999999988


Q ss_pred             hcC
Q psy12679         73 ARK   75 (76)
Q Consensus        73 ~~~   75 (76)
                      +++
T Consensus       141 ~~n  143 (279)
T 3i3n_A          141 LSN  143 (279)
T ss_dssp             TTT
T ss_pred             cch
Confidence            764

>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}

Probab=99.71  E-value=7.7e-19  Score=102.13  Aligned_cols=75  Identities=13%  Similarity=0.206  Sum_probs=61.4

Q ss_pred             ChhhccCC--CCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679          1 MMKYIYAN--PCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK   75 (76)
Q Consensus         1 Fr~lf~~~--e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~   75 (76)
                      |++||.+.  ++....|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|++++.+.++.++
T Consensus        51 F~~~f~~~~~e~~~~~i~l~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n  127 (145)
T 4eoz_A           51 FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVEN  127 (145)
T ss_dssp             HHHHHHSSSHHHHHTEEEECSSCHHHHHHHHHHHHHSCCTTGGGTHHHHHHHHHHTTCHHHHHHHHCC---------
T ss_pred             HHHHHcCCCcCCCCceEEecCCCHHHHHHHHHhhccCccCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHH
Confidence            78888774  4456799999999999999999999999999999999999999999999999999999999888764

>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A

Probab=99.70  E-value=1.7e-18  Score=98.63  Aligned_cols=65  Identities=15%  Similarity=0.268  Sum_probs=60.0

Q ss_pred             ChhhccCCCCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHH
Q psy12679          1 MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHY   68 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~   68 (76)
                      |++||.+   +..+|.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|++++.
T Consensus        53 F~~~f~~---~~~~i~l~~~~~~~f~~ll~~~Ytg~~~i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~  117 (119)
T 2q81_A           53 FKMLFVD---QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKS  117 (119)
T ss_dssp             HHHHHHH---CCSGGGGGGCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHcC---CCCEEEeCCCCHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            6788876   3457889999999999999999999999999999999999999999999999999985

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=99.67  E-value=5e-17  Score=104.56  Aligned_cols=75  Identities=13%  Similarity=0.206  Sum_probs=67.8

Q ss_pred             ChhhccC--CCCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhhcC
Q psy12679          1 MMKYIYA--NPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNARK   75 (76)
Q Consensus         1 Fr~lf~~--~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~~~   75 (76)
                      |++||.+  .|+...+|.|+++++++|+.+|+|+|||++.++.+++.+++.+|++|+++.+++.|+++|.+.++.++
T Consensus       200 F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n  276 (312)
T 3hqi_A          200 FSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVEN  276 (312)
T ss_dssp             HHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTT
T ss_pred             HHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHH
Confidence            7889987  46677899999999999999999999999999999999999999999999999999999999887764

>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0

Probab=99.65  E-value=7.6e-17  Score=92.16  Aligned_cols=59  Identities=17%  Similarity=0.286  Sum_probs=54.5

Q ss_pred             CCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHh
Q psy12679         11 EHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYK   69 (76)
Q Consensus        11 ~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~   69 (76)
                      ....|.++++++++|+.+|+|+|||++.++.+|+.+++.+|++||++.+++.|++++.+
T Consensus        59 ~~~~i~l~~v~~~~f~~ll~fiYtg~~~i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~  117 (119)
T 3m5b_A           59 RGQWALGEGISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQSLEEACWRARGD  117 (119)
T ss_dssp             CEEEECCSSCCHHHHHHHHHHHTTCCEEECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             CCCEEEeCCCCHHHHHHHHHHHcCCCcCcCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence            45688999999999999999999999999999999999999999999999999998754

>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A

Probab=99.59  E-value=1.6e-15  Score=86.06  Aligned_cols=58  Identities=21%  Similarity=0.414  Sum_probs=53.4

Q ss_pred             ChhhccCCCCCCCeEEeCCCCHHHHHHHhhhHhcCcc-ccCHHhHHHHHHHHhhcCccchhh
Q psy12679          1 MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEV-RIGQDQLQEFLKTAQTLQVRGLTD   61 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l-~i~~~~v~~ll~aA~~lqi~~l~~   61 (76)
                      |++||.++   ...|.++++++++|+.+++|+|||++ .++++++.+++.+|++|+++.+++
T Consensus        57 F~~~f~~~---~~~i~l~~~~~~~f~~~l~~~Ytg~~~~~~~~~~~~ll~~A~~l~i~~L~~  115 (116)
T 3fkc_A           57 FHQLFSVA---GQVVELSFIRAEIFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA  115 (116)
T ss_dssp             HHHHTTSC---CSEEEECSSCHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHHTCHHHHT
T ss_pred             HHHHHcCC---CCEEEeCCCCHHHHHHHHHhhcCCCcCCCCHHHHHHHHHHHHHhCccccCc
Confidence            67888764   56899999999999999999999999 799999999999999999999875

>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D

Probab=99.39  E-value=1.9e-13  Score=80.13  Aligned_cols=72  Identities=18%  Similarity=0.283  Sum_probs=63.0

Q ss_pred             ChhhccCCCCCCCeEEeCCCCHHHHHHHhhhHhcCc--------------------------cccCHHhHHHHHHHHhhc
Q psy12679          1 MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGE--------------------------VRIGQDQLQEFLKTAQTL   54 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~--------------------------l~i~~~~v~~ll~aA~~l   54 (76)
                      ||+||.+..  ...|.|++|++.+++.+++|+|.+.                          +.++.+++.+++.||++|
T Consensus        27 ik~ml~~~~--~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~vd~~~l~eLi~AAnyL  104 (141)
T 1fs1_B           27 IKTMLEDLG--MDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYL  104 (141)
T ss_dssp             HHHHHHHTC--CSSEECTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcC--CCceecCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            356775422  5689999999999999999999987                          788999999999999999


Q ss_pred             CccchhhcChhhHHhhhhhc
Q psy12679         55 QVRGLTDVPPKDHYKFLNAR   74 (76)
Q Consensus        55 qi~~l~~~C~~~l~~~~~~~   74 (76)
                      +|++|.+.|++++...+.-+
T Consensus       105 ~I~~Lldl~c~~vA~~ikgk  124 (141)
T 1fs1_B          105 DIKGLLDVTCKTVANMIKGK  124 (141)
T ss_dssp             TCHHHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHHHHHHHHcCC
Confidence            99999999999998887643

>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*

Probab=99.32  E-value=4.5e-13  Score=80.01  Aligned_cols=72  Identities=17%  Similarity=0.293  Sum_probs=42.1

Q ss_pred             ChhhccCCCCCCCeEEeCCCCHHHHHHHhhhHhcCc---------------------------cccCHHhHHHHHHHHhh
Q psy12679          1 MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGE---------------------------VRIGQDQLQEFLKTAQT   53 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~---------------------------l~i~~~~v~~ll~aA~~   53 (76)
                      ||+||.+. .....|.|++|++.+++.+++|+|++.                           +.++.+++.+|+.||++
T Consensus        29 ik~ml~~~-~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~l~eLi~AAny  107 (160)
T 2p1m_A           29 IAHMVEDD-CVDNGVPLPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKIDQATLFELILAANY  107 (160)
T ss_dssp             TC-------------CCTTSCHHHHHHHHHC------------------------------------------CHHHHHH
T ss_pred             HHHHHHcc-CCCCceeCCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46677553 234589999999999999999999997                           56889999999999999


Q ss_pred             cCccchhhcChhhHHhhhhh
Q psy12679         54 LQVRGLTDVPPKDHYKFLNA   73 (76)
Q Consensus        54 lqi~~l~~~C~~~l~~~~~~   73 (76)
                      |+|++|.+.|++++...+.-
T Consensus       108 L~I~~Lldl~c~~vA~~ikg  127 (160)
T 2p1m_A          108 LNIKNLLDLTCQTVADMIKG  127 (160)
T ss_dssp             TTCHHHHHHHHHHHHHTTTT
T ss_pred             HhHHHHHHHHHHHHHHHHcC
Confidence            99999999999999888743

>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*

Probab=99.15  E-value=4.9e-11  Score=65.85  Aligned_cols=55  Identities=18%  Similarity=0.263  Sum_probs=46.0

Q ss_pred             ChhhccC----CCCCCCeEEeCCCCHHHHHHHhhhHh-----c---Cccc---cCHHhHHHHHHHHhhcC
Q psy12679          1 MMKYIYA----NPCEHPIVILRDVKEHDMEALLSFMY-----N---GEVR---IGQDQLQEFLKTAQTLQ   55 (76)
Q Consensus         1 Fr~lf~~----~e~~~~~i~l~~v~~~~~~~ll~f~Y-----t---g~l~---i~~~~v~~ll~aA~~lq   55 (76)
                      ||+||.+    .|+....|.|++|++.+++.+++|+|     +   +++.   |+++++.+|+.||++|+
T Consensus        27 ik~m~~~~~~~~E~~~~~I~l~~V~~~iL~kViey~~~h~~~~~~~~~i~~~~i~~~~l~eLl~AAnyL~   96 (97)
T 4ajy_C           27 IKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD   96 (97)
T ss_dssp             HHHHHCCC--------CEEECTTSCHHHHHHHHHHHHHHHHHTTCCSCCCCCCCCGGGHHHHHHHHHHHT
T ss_pred             HHHHHHhCCCccccCCCceECCCCCHHHHHHHHHHHHHhcccCCCcCCCCcCcCCHHHHHHHHHHHhhhC
Confidence            5788875    24457799999999999999999999     5   7887   99999999999999997

>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*

Probab=98.77  E-value=1.6e-08  Score=60.80  Aligned_cols=61  Identities=15%  Similarity=0.279  Sum_probs=53.7

Q ss_pred             CCeEEeCCCCHHHHHHHhhhHhcCc-------------------------cccCHHhHHHHHHHHhhcCccchhhcChhh
Q psy12679         12 HPIVILRDVKEHDMEALLSFMYNGE-------------------------VRIGQDQLQEFLKTAQTLQVRGLTDVPPKD   66 (76)
Q Consensus        12 ~~~i~l~~v~~~~~~~ll~f~Ytg~-------------------------l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~   66 (76)
                      ...|.|++|++.+++.+++|++...                         +.++.+.+.+|+.||++|+|++|.+.||++
T Consensus        49 ~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~vd~~~LfeLi~AAnyLdIk~Lldl~c~~  128 (169)
T 3v7d_A           49 EIVMPVPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKV  128 (169)
T ss_dssp             -CEEECTTCCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCceeeCCCCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcCCHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            3689999999999999999998764                         357889999999999999999999999999


Q ss_pred             HHhhhh
Q psy12679         67 HYKFLN   72 (76)
Q Consensus        67 l~~~~~   72 (76)
                      +...+.
T Consensus       129 vA~~ik  134 (169)
T 3v7d_A          129 VAEMIR  134 (169)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            866554

>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B

Probab=98.46  E-value=1.2e-07  Score=52.14  Aligned_cols=55  Identities=16%  Similarity=0.186  Sum_probs=43.6

Q ss_pred             hhhccC----CCCCCCeEEeCCCCHHHHHHHhhhHhcCc-----------cccCHHhHHHHHHHHhhcCc
Q psy12679          2 MKYIYA----NPCEHPIVILRDVKEHDMEALLSFMYNGE-----------VRIGQDQLQEFLKTAQTLQV   56 (76)
Q Consensus         2 r~lf~~----~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~-----------l~i~~~~v~~ll~aA~~lqi   56 (76)
                      |+|+..    .+.....|.|++|++.+++.+++|+|...           -.++.+.+.+++.||++|+|
T Consensus        27 k~ml~~~~~~~e~~~~~Ipl~~V~~~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~l~eLi~AAnyLdI   96 (96)
T 2fnj_C           27 KAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC   96 (96)
T ss_dssp             HHHHHCC--------CEEECSSCCHHHHHHHHHHHHHHHHHHSCCSCCCCCCCCTTTHHHHHHHHHHHTC
T ss_pred             HHHHHccCCcccccCCceeCCCCCHHHHHHHHHHHHHccccCCCcccCCCcccCHHHHHHHHHHHHHhCc
Confidence            567754    13344689999999999999999999865           25889999999999999986

>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1

Probab=98.42  E-value=3.8e-07  Score=50.39  Aligned_cols=55  Identities=16%  Similarity=0.184  Sum_probs=45.5

Q ss_pred             hhhccCC-CCCCCeEEeCCCCHHHHHHHhhhHhcCc--------------cccCHHhHHHHHHHHhhcCc
Q psy12679          2 MKYIYAN-PCEHPIVILRDVKEHDMEALLSFMYNGE--------------VRIGQDQLQEFLKTAQTLQV   56 (76)
Q Consensus         2 r~lf~~~-e~~~~~i~l~~v~~~~~~~ll~f~Ytg~--------------l~i~~~~v~~ll~aA~~lqi   56 (76)
                      |.|+... +.....|.|++|++.+++.+++|+|...              -.++.+.+.+++.||++|+|
T Consensus        30 k~ml~~~~e~~~~~Iplp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI   99 (99)
T 1hv2_A           30 KAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             HHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHhcccccCCCceecCCcCHHHHHHHHHHHHHhcccCCCccccccCCCccCCHHHHHHHHHHHHHhCc
Confidence            5667542 3344689999999999999999999865              25889999999999999986

>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}

Probab=98.35  E-value=4.9e-07  Score=50.50  Aligned_cols=56  Identities=14%  Similarity=0.264  Sum_probs=47.7

Q ss_pred             CCeEEeCCCCHHHHHHHhhhHhcCccccCHH-hHHHHHHHHhhcCccchhhcChhhHH
Q psy12679         12 HPIVILRDVKEHDMEALLSFMYNGEVRIGQD-QLQEFLKTAQTLQVRGLTDVPPKDHY   68 (76)
Q Consensus        12 ~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~-~v~~ll~aA~~lqi~~l~~~C~~~l~   68 (76)
                      ..++.+ |-+|..|+.||+|+.+|++.++.+ ....+++-|.+++++++++.|.+.+.
T Consensus        49 ~~~~fi-DRdp~~F~~IL~~lr~g~l~~p~~~~~~~l~~Ea~fy~l~~L~~~l~~~i~  105 (107)
T 3drz_A           49 TGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIR  105 (107)
T ss_dssp             TSCEEE-CSCHHHHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CceEEe-cCChHHHHHHHHHhCCCeeCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            346666 689999999999999999988654 35789999999999999999988764

>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1

Probab=98.15  E-value=2.7e-06  Score=47.94  Aligned_cols=55  Identities=16%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             hhhccCC----CCCCCeEEeCCCCHHHHHHHhhhHhcCcc-----------ccCHHhHHHHHHHHhhcCc
Q psy12679          2 MKYIYAN----PCEHPIVILRDVKEHDMEALLSFMYNGEV-----------RIGQDQLQEFLKTAQTLQV   56 (76)
Q Consensus         2 r~lf~~~----e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l-----------~i~~~~v~~ll~aA~~lqi   56 (76)
                      |.|+...    +.....|.|++|++.+++.+++|++...-           .++.+.+.+|+.||++|+|
T Consensus        43 k~ml~~~~~~~e~~~~~IplpnV~s~iL~kVieyc~~h~~~~~~~~~i~~w~vd~~~lfeLi~AAnyLdI  112 (112)
T 1vcb_B           43 KAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC  112 (112)
T ss_dssp             HHHSSCC--------CEEECSSCCHHHHHHHHHHHHHHHHHSSCSSCCCCCCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhcCCcccccCCceeCCCCCHHHHHHHHHHHHHhhhccCCcCCCCCcccCHHHHHHHHHHHHHhCc
Confidence            5566531    23346899999999999999999987652           6899999999999999986

>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A

Probab=97.56  E-value=4.2e-05  Score=47.15  Aligned_cols=57  Identities=14%  Similarity=0.266  Sum_probs=47.9

Q ss_pred             CCeEEeCCCCHHHHHHHhhhHhcCccccCHH-hHHHHHHHHhhcCccchhhcChhhHHh
Q psy12679         12 HPIVILRDVKEHDMEALLSFMYNGEVRIGQD-QLQEFLKTAQTLQVRGLTDVPPKDHYK   69 (76)
Q Consensus        12 ~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~-~v~~ll~aA~~lqi~~l~~~C~~~l~~   69 (76)
                      ...+.+ |-+|..|+.||+|+-+|++.++.+ ....+++-|.+|+|+++++.|.+.+.+
T Consensus        55 ~geyFI-DRDP~~F~~ILnyLRtG~L~lP~~~~~~~l~eEA~FygL~~Lv~~l~~~i~e  112 (202)
T 3drx_A           55 TGAYLI-DRDPTYFGPVLNYLRHGKLVINKDLAEEGVLEEAEFYNITSLIKLVKDKIRE  112 (202)
T ss_dssp             TCCEEE-CSCSTTHHHHHHHHHHSCCCCCTTSCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CccEEe-cCChHHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence            345666 479999999999999999988554 346799999999999999999988754

>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2

Probab=97.42  E-value=0.00015  Score=41.40  Aligned_cols=55  Identities=5%  Similarity=0.004  Sum_probs=44.7

Q ss_pred             CCeEEeCCCCHHHHHHHhhhHhcCccccCHH-hHHHHHHHHhhcCccch-hhcChhhH
Q psy12679         12 HPIVILRDVKEHDMEALLSFMYNGEVRIGQD-QLQEFLKTAQTLQVRGL-TDVPPKDH   67 (76)
Q Consensus        12 ~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~-~v~~ll~aA~~lqi~~l-~~~C~~~l   67 (76)
                      .+.+.+. =++..|+.||+|+-+|++.++.+ .+..+++-|.+|+|+.+ ++.||..-
T Consensus        52 ~g~~FiD-Rdp~~F~~ILnflR~G~l~~p~~~~~~~l~~Ea~fy~i~~l~l~~cC~~~  108 (124)
T 1s1g_A           52 TKEYFFD-RDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEE  108 (124)
T ss_dssp             SCSEEEC-SCHHHHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHTTCCGGGBCHHHHHH
T ss_pred             CCcEEEc-CChHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            4466664 59999999999999999987654 57889999999999887 47776443

>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A

Probab=97.29  E-value=0.00045  Score=40.22  Aligned_cols=57  Identities=9%  Similarity=0.068  Sum_probs=46.2

Q ss_pred             CCeEEeCCCCHHHHHHHhhhHhcCccccCHH-hHHHHHHHHhhcCccch-hhcChhhHHh
Q psy12679         12 HPIVILRDVKEHDMEALLSFMYNGEVRIGQD-QLQEFLKTAQTLQVRGL-TDVPPKDHYK   69 (76)
Q Consensus        12 ~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~-~v~~ll~aA~~lqi~~l-~~~C~~~l~~   69 (76)
                      .+.+.++ =++..|+.||+|+-+|++.++.+ .+..+++-|++|+|+.+ ++.||..-..
T Consensus        74 ~g~yFiD-Rdp~~F~~ILnflR~G~l~~p~~~~~~~l~eEa~fy~i~~l~l~~CC~~~~~  132 (140)
T 2nz0_B           74 TKEYFFD-RDPEVFRCVLNFYRTGKLHYPRYECISAYDDELAFYGILPEIIGDCCYEEYK  132 (140)
T ss_dssp             TTEEEEC-SCHHHHHHHHHHHHHSSBCCCTTSCHHHHHHHHHHHTCCGGGBCTTTHHHHH
T ss_pred             CCeEEEe-CCcHHHHHHHHHHhcCCcCCCCCcCHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            4566664 69999999999999999987654 48889999999999887 6787755443

>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2

Probab=96.99  E-value=0.00037  Score=38.67  Aligned_cols=56  Identities=7%  Similarity=0.076  Sum_probs=44.8

Q ss_pred             CCeEEeCCCCHHHHHHHhhhHhcCccccCHH-hHHHHHHHHhhcCccch-hhcChhhHH
Q psy12679         12 HPIVILRDVKEHDMEALLSFMYNGEVRIGQD-QLQEFLKTAQTLQVRGL-TDVPPKDHY   68 (76)
Q Consensus        12 ~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~-~v~~ll~aA~~lqi~~l-~~~C~~~l~   68 (76)
                      .+.+.+. =+|..|+.||+|+-+|++.++++ .+..+++-|.+++|+++ ++.||..-.
T Consensus        39 ~~~~FiD-Rdp~~F~~ILnflR~g~l~~p~~~~~~~l~~Ea~fy~i~~l~~~~cc~~~~   96 (105)
T 1nn7_A           39 TQQYFFD-RDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEEY   96 (105)
T ss_dssp             GTEEEEC-SCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSCCBCHHHHHHH
T ss_pred             CCcEEEe-CCcHHHHHHHHHHhcCCCCCCCCcCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            3466664 59999999999999999987654 47889999999999887 467775443

>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2

Probab=96.84  E-value=0.00055  Score=38.57  Aligned_cols=54  Identities=7%  Similarity=-0.006  Sum_probs=43.3

Q ss_pred             CCeEEeCCCCHHHHHHHhhhHhcCccccCHH-hHHHHHHHHhhcCccchh-hcChhh
Q psy12679         12 HPIVILRDVKEHDMEALLSFMYNGEVRIGQD-QLQEFLKTAQTLQVRGLT-DVPPKD   66 (76)
Q Consensus        12 ~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~-~v~~ll~aA~~lqi~~l~-~~C~~~   66 (76)
                      ...+.+ |-+|..|+.||+|+-+|++.++.+ .+..+++-|.+++|++.. +.||..
T Consensus        45 ~g~~Fi-DRdp~~F~~ILnylR~G~l~~p~~~~~~~~~~Ea~fy~i~~~~l~~CC~~  100 (115)
T 3kvt_A           45 LNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWM  100 (115)
T ss_dssp             TTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGGGBCGGGSH
T ss_pred             CCcEEE-ecChHHHHHHHHHhcCCCCCCCCcccHHHHHHHHHHhCCChHHHHHHHHH
Confidence            456666 479999999999999999987653 578899999999996654 566643

>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A

Probab=96.01  E-value=0.0041  Score=34.14  Aligned_cols=49  Identities=16%  Similarity=0.232  Sum_probs=39.8

Q ss_pred             CCCeEEeCCCCHHHHHHHhhhHhc-CccccCHH-hHHHHHHHHhhcCccchh
Q psy12679         11 EHPIVILRDVKEHDMEALLSFMYN-GEVRIGQD-QLQEFLKTAQTLQVRGLT   60 (76)
Q Consensus        11 ~~~~i~l~~v~~~~~~~ll~f~Yt-g~l~i~~~-~v~~ll~aA~~lqi~~l~   60 (76)
                      ...++.+ |-+|..|+.||+|+-+ |++.++++ .+..+++-|.+++|++.+
T Consensus        40 ~~~eyFi-DRdp~~F~~ILnflR~~G~l~~p~~~~~~~~~~Ea~fy~i~~~~   90 (100)
T 1t1d_A           40 LRNEYFF-DRNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGENA   90 (100)
T ss_dssp             TTTEEEE-CSCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCHHH
T ss_pred             CceeEEE-cCChHHHHHHHHHHhcCCcccCCCCCCHHHHHHHHHHcCCCHHH
Confidence            3456776 5699999999999999 89977543 578899999999997743

>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.81  E-value=0.033  Score=30.33  Aligned_cols=37  Identities=11%  Similarity=0.004  Sum_probs=32.9

Q ss_pred             CccccCHHhHHHHHHHHhhcCccchhhcChhhHHhhh
Q psy12679         35 GEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFL   71 (76)
Q Consensus        35 g~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~   71 (76)
                      +.-.++++|...++..|+.++.+.+.+.|.+|+.+..
T Consensus         4 ~~~~L~~~NCl~i~~~A~~~~~~~L~~~a~~fi~~nF   40 (105)
T 2eqx_A            4 GSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHL   40 (105)
T ss_dssp             CCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             hhccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4557899999999999999999999999999987654

>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}

Probab=92.01  E-value=0.068  Score=30.78  Aligned_cols=35  Identities=11%  Similarity=-0.008  Sum_probs=31.2

Q ss_pred             ccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhh
Q psy12679         38 RIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLN   72 (76)
Q Consensus        38 ~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~   72 (76)
                      .++.+|+.+++..|..++.+.+.+.|.+++.++..
T Consensus       131 ~l~~~n~~~~~~~A~~~~~~~L~~~~~~~i~~~~~  165 (172)
T 3htm_A          131 NLSVENAAEILILADLHSADQLKTQAVDFINYHAT  165 (172)
T ss_dssp             TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred             hCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            46888999999999999999999999999987654

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=90.85  E-value=0.46  Score=32.59  Aligned_cols=49  Identities=14%  Similarity=0.215  Sum_probs=39.9

Q ss_pred             CCCeEEeCCCCHHHHHHHhhhHhc-CccccCHH-hHHHHHHHHhhcCccchh
Q psy12679         11 EHPIVILRDVKEHDMEALLSFMYN-GEVRIGQD-QLQEFLKTAQTLQVRGLT   60 (76)
Q Consensus        11 ~~~~i~l~~v~~~~~~~ll~f~Yt-g~l~i~~~-~v~~ll~aA~~lqi~~l~   60 (76)
                      ..+++.+ |=+|..|+.+|+|..| |++..+++ .+..+.+-|.++++.+..
T Consensus        91 ~~~~~f~-DR~~~~F~~IL~~~r~~g~l~~p~~~~~~~~~~E~~f~~i~~~~  141 (514)
T 2r9r_B           91 LRNEYFF-DRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEA  141 (514)
T ss_dssp             TTTEEEE-CSCHHHHHHHHHHHHHTSCCCCCTTSCHHHHHHHHHHTTCCHHH
T ss_pred             CCCCEEE-cCChHHHHHHHHHHhcCCccccCCcccHHHHHHHHHhcCCCHHH
Confidence            3456676 5799999999999999 99987554 567789999999997654

>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A

Probab=89.98  E-value=0.13  Score=32.54  Aligned_cols=35  Identities=11%  Similarity=-0.008  Sum_probs=31.0

Q ss_pred             ccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhh
Q psy12679         38 RIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLN   72 (76)
Q Consensus        38 ~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~   72 (76)
                      .++.+|+..++..|..++.+.|.+.|.+++.+++.
T Consensus       271 ~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~  305 (312)
T 3hqi_A          271 NLSVENAAEILILADLHSADQLKTQAVDFINYHAT  305 (312)
T ss_dssp             TCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC-
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            35788999999999999999999999999987654

>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A

Probab=83.53  E-value=2.3  Score=21.01  Aligned_cols=36  Identities=8%  Similarity=0.283  Sum_probs=30.5

Q ss_pred             CCCCHHHHHHHhhhHhcCcc---ccCHHhHHHHHHHHhhcCcc
Q psy12679         18 RDVKEHDMEALLSFMYNGEV---RIGQDQLQEFLKTAQTLQVR   57 (76)
Q Consensus        18 ~~v~~~~~~~ll~f~Ytg~l---~i~~~~v~~ll~aA~~lqi~   57 (76)
                      -||+...+..+|+    |+-   .++++....+.++|..++..
T Consensus        10 aGVS~sTVSrvLn----g~~~~~~vs~et~~rI~~aa~~lgY~   48 (65)
T 1uxc_A           10 AGVSRTTASYVIN----GKAKQYRVSDKTVEKVMAVVREHNYH   48 (65)
T ss_dssp             HTSCHHHHHHHHH----TCTTTTTCTTHHHHHHHHHHHHHTCC
T ss_pred             HCcCHHHHHHHHc----CCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence            4788888888776    777   89999999999999998864

>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A

Probab=81.32  E-value=0.73  Score=28.65  Aligned_cols=35  Identities=6%  Similarity=-0.016  Sum_probs=31.2

Q ss_pred             ccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhh
Q psy12679         38 RIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLN   72 (76)
Q Consensus        38 ~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~   72 (76)
                      .++.+|+..++..|..++.+.+.+.|.+++.+...
T Consensus       138 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~  172 (279)
T 3i3n_A          138 KLHLSNCVAIHSLAHMYTLSQLALKAADMIRRNFH  172 (279)
T ss_dssp             HCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTHH
T ss_pred             cCCcchHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999999876643

>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B

Probab=81.10  E-value=0.51  Score=28.95  Aligned_cols=35  Identities=6%  Similarity=-0.050  Sum_probs=30.6

Q ss_pred             ccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhh
Q psy12679         38 RIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLN   72 (76)
Q Consensus        38 ~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~   72 (76)
                      .++.+|+..++..|..++.+.+.+.|.+++.+...
T Consensus       130 ~l~~~n~~~i~~~A~~~~~~~L~~~~~~~i~~~f~  164 (256)
T 3hve_A          130 CIAAENCIGIRDFALHYCLHHVHYLATEYLETHFR  164 (256)
T ss_dssp             TCCSSTTHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hCCHhhHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	76
d1r29a_	122	d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB	6e-06
d1buoa_	121	d.42.1.1 (A:) Promyelocytic leukaemia zinc finger	6e-06

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 6e-06
 Identities = 11/53 (20%), Positives = 21/53 (39%)

Query: 10  CEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
               I +  ++       LL FMY   + + +  +   + TA  LQ+  + D 
Sbjct: 62  NLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDT 114

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 6e-06
 Identities = 8/55 (14%), Positives = 20/55 (36%)

Query: 8   NPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDV 62
                    L  +     + +L + Y   ++   + L + L  A+ L++  L + 
Sbjct: 58  FHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQ 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d1buoa_	121	Promyelocytic leukaemia zinc finger (PLZF) protein	99.76
d1r29a_	122	B-cell lymphoma 6 (Bcl6) protein BTB domain {Human	99.75
d2c9wc1	96	Elongin C {Human (Homo sapiens) [TaxId: 9606]}	98.04
d1hv2a_	99	Elongin C {Baker's yeast (Saccharomyces cerevisiae	97.91
d1fs1b1	55	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	97.36
d1nexa1	70	Centromere DNA-binding protein complex Cbf3 subuni	97.19
d3kvta_	103	akv3.1 voltage-gated potassium channel {California	97.05
d1nn7a_	105	Potassium channel kv4.2 {Rat (Rattus norvegicus) [	96.9
d1t1da_	100	Shaker potassium channel {California sea hare (Apl	94.85
d1nexa2	72	Centromere DNA-binding protein complex Cbf3 subuni	93.63
d1fs1b2	61	Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa	93.27
d1qpza1	57	Purine repressor (PurR), N-terminal domain {Escher	81.75

>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.2e-19  Score=101.78  Aligned_cols=66  Identities=15%  Similarity=0.207  Sum_probs=60.8

Q ss_pred             ChhhccCCCCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHh
Q psy12679          1 MMKYIYANPCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYK   69 (76)
Q Consensus         1 Fr~lf~~~e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~   69 (76)
                      |++||.++   ..++.++++++++|+.+|+|+|||++.++.+++.+++.+|++|+++++++.|++||.+
T Consensus        54 F~~lf~~~---~~~i~~~~v~~~~f~~ll~~~Ytg~i~l~~~~v~~ll~~A~~l~~~~L~~~C~~~L~~  119 (121)
T d1buoa_          54 FEILFHRN---SQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLET  119 (121)
T ss_dssp             HHHHTTSC---CSEEEECSSCHHHHHHHHHHHHHSCCCCCGGGHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhhccCc---cceeecCCCCHHHHHHHHHheEccccCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            67888653   4689999999999999999999999999999999999999999999999999999954

>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.3e-19  Score=101.49  Aligned_cols=69  Identities=17%  Similarity=0.225  Sum_probs=61.3

Q ss_pred             ChhhccCC--CCCCCeEEeCCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCccchhhcChhhHHh
Q psy12679          1 MMKYIYAN--PCEHPIVILRDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYK   69 (76)
Q Consensus         1 Fr~lf~~~--e~~~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~   69 (76)
                      ||+||.+.  ++....+.++++++++|+.+++|+|||++.++.+++.+++.+|++|+++.+++.|.++|.+
T Consensus        51 F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~~v~~ll~~A~~l~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          51 FYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA  121 (122)
T ss_dssp             HHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecCchhhHHHHHHHHHHHCcHHHHHHHHHHHHh
Confidence            78899774  3334455568999999999999999999999999999999999999999999999999865

>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.9e-06  Score=44.73  Aligned_cols=54  Identities=19%  Similarity=0.244  Sum_probs=38.5

Q ss_pred             hhhccC----CCCCCCeEEeCCCCHHHHHHHhhhHh-----cC---c---cccCHHhHHHHHHHHhhcC
Q psy12679          2 MKYIYA----NPCEHPIVILRDVKEHDMEALLSFMY-----NG---E---VRIGQDQLQEFLKTAQTLQ   55 (76)
Q Consensus         2 r~lf~~----~e~~~~~i~l~~v~~~~~~~ll~f~Y-----tg---~---l~i~~~~v~~ll~aA~~lq   55 (76)
                      |.|+.+    .++....|.|++|++..++.+++|++     ++   +   ..++++.+.+++.||++|+
T Consensus        27 ~~ml~~~~~~~e~~~~~IpL~nV~s~iL~kViey~~~h~~~~~~~~~~~~fdi~~~~l~eLi~AAnyLd   95 (96)
T d2c9wc1          27 KAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD   95 (96)
T ss_dssp             HHC------------CEEECTTCCHHHHHHHHHHHHHHHHTC----CCCCCCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHhccCccccCCCCeeECCCCCHHHHHHHHHHHHhhccCcCCcCCCCCCcCCHHHHHHHHHHHhhhc
Confidence            456643    23446789999999999999999995     22   2   2478999999999999986

>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Elongin C
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=2.3e-05  Score=41.76  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=43.0

Q ss_pred             hhhccCC-CCCCCeEEeCCCCHHHHHHHhhhHhcC--------------ccccCHHhHHHHHHHHhhcCc
Q psy12679          2 MKYIYAN-PCEHPIVILRDVKEHDMEALLSFMYNG--------------EVRIGQDQLQEFLKTAQTLQV   56 (76)
Q Consensus         2 r~lf~~~-e~~~~~i~l~~v~~~~~~~ll~f~Ytg--------------~l~i~~~~v~~ll~aA~~lqi   56 (76)
                      |.|+.+. ......|.+++|++..++.+++|++-.              +..++.+.+.+++.||++|+|
T Consensus        30 ~~ml~~~~~e~~~~Ipl~~V~s~iL~kViey~~~h~~~~~~~~~~~~~~efdvd~~~l~eLi~AAnyLdI   99 (99)
T d1hv2a_          30 KAMIEGPFRESKGRIELKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLSI   99 (99)
T ss_dssp             HHHHHSSTTTCTTEEEETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCCCCCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHccCCCCcCccccCCCChHHHHHHHHHHHHhhhCcCcccccccCCCCCCCHHHHHHHHHHHhhhCC
Confidence            4555442 334668999999999999999999621              235688899999999999986

>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=5.8e-05  Score=36.32  Aligned_cols=36  Identities=28%  Similarity=0.453  Sum_probs=32.3

Q ss_pred             ccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhh
Q psy12679         38 RIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNA   73 (76)
Q Consensus        38 ~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~   73 (76)
                      .++.+.+-+++.||++|+|++|.+.|++.+...+.-
T Consensus         9 ~~d~~~Lf~Li~AAnyL~I~~Lldl~c~~vA~~ikg   44 (55)
T d1fs1b1           9 KVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKG   44 (55)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcC
Confidence            578889999999999999999999999999877654

>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Skp1 dimerisation domain-like
superfamily: Skp1 dimerisation domain-like
family: Skp1 dimerisation domain-like
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00011  Score=36.92  Aligned_cols=36  Identities=22%  Similarity=0.315  Sum_probs=32.0

Q ss_pred             ccCHHhHHHHHHHHhhcCccchhhcChhhHHhhhhh
Q psy12679         38 RIGQDQLQEFLKTAQTLQVRGLTDVPPKDHYKFLNA   73 (76)
Q Consensus        38 ~i~~~~v~~ll~aA~~lqi~~l~~~C~~~l~~~~~~   73 (76)
                      .++.+.+.+++.||++|+|++|.+.|++.+...+.-
T Consensus        10 ~~d~~~L~~li~AAnyL~I~~Ll~l~c~~vA~~ikg   45 (70)
T d1nexa1          10 KVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRG   45 (70)
T ss_dssp             CSCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             hcCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHcc
Confidence            468899999999999999999999999999776653

>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: akv3.1 voltage-gated potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=97.05  E-value=0.00017  Score=38.58  Aligned_cols=56  Identities=9%  Similarity=0.047  Sum_probs=45.6

Q ss_pred             CCeEEeCCCCHHHHHHHhhhHhcCccccCHH-hHHHHHHHHhhcCcc-chhhcChhhHH
Q psy12679         12 HPIVILRDVKEHDMEALLSFMYNGEVRIGQD-QLQEFLKTAQTLQVR-GLTDVPPKDHY   68 (76)
Q Consensus        12 ~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~-~v~~ll~aA~~lqi~-~l~~~C~~~l~   68 (76)
                      ...+.+ |-+|..|+.||+|+-+|++.++++ .+..+++-|.+++|+ .+++.||..-.
T Consensus        42 ~~~~fi-DRdp~~F~~IL~ylR~g~l~~p~~~~~~~l~~Ea~yygi~~~~l~~Cc~~~~   99 (103)
T d3kvta_          42 LNEYFF-DRHPGVFAQIINYYRSGKLHYPTDVCGPLFEEELEFWGLDSNQVEPCCWMTY   99 (103)
T ss_dssp             TTEEEE-CSCTTTHHHHHHHHHHSCBCCCSSSCHHHHHHHHHHHTCCGGGBCGGGSHHH
T ss_pred             CCcEEe-cCCHHHHHHHHHHHccCCcccccccCHHHHHHHHHHcCCCHHHHHHHhHHHH
Confidence            446666 589999999999999999987654 567789999999996 57889975443

>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Potassium channel kv4.2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.90  E-value=0.00018  Score=38.63  Aligned_cols=55  Identities=5%  Similarity=0.030  Sum_probs=42.6

Q ss_pred             CCeEEeCCCCHHHHHHHhhhHhcCccccCHH-hHHHHHHHHhhcCccch-hhcChhhH
Q psy12679         12 HPIVILRDVKEHDMEALLSFMYNGEVRIGQD-QLQEFLKTAQTLQVRGL-TDVPPKDH   67 (76)
Q Consensus        12 ~~~i~l~~v~~~~~~~ll~f~Ytg~l~i~~~-~v~~ll~aA~~lqi~~l-~~~C~~~l   67 (76)
                      .+.+.++ -+|..|+.||+|+-+|++.++++ ....+++-|.+++|++. .+.||..-
T Consensus        39 ~~~~FiD-Rdp~~F~~IL~ylR~G~l~~p~~~~~~~l~~Ea~fygi~~~~l~~cc~~~   95 (105)
T d1nn7a_          39 TQQYFFD-RDPDIFRHILNFYRTGKLHYPRHECISAYDEELAFFGLIPEIIGDCCYEE   95 (105)
T ss_dssp             GTEEEEC-SCTTTHHHHHHHHHHSCBCCCTTSCHHHHHHHHHHHTCCSCCBCHHHHHH
T ss_pred             CCcEEEe-CCHHHHHHHHHHHhcCccccCCCccHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            4566665 69999999999999999987654 46779999999999764 55565443

>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: Tetramerization domain of potassium channels
domain: Shaker potassium channel
species: California sea hare (Aplysia californica) [TaxId: 6500]

Probab=94.85  E-value=0.018  Score=30.21  Aligned_cols=47  Identities=15%  Similarity=0.223  Sum_probs=36.6

Q ss_pred             CCCeEEeCCCCHHHHHHHhhhHhcC-ccccCHH-hHHHHHHHHhhcCccc
Q psy12679         11 EHPIVILRDVKEHDMEALLSFMYNG-EVRIGQD-QLQEFLKTAQTLQVRG   58 (76)
Q Consensus        11 ~~~~i~l~~v~~~~~~~ll~f~Ytg-~l~i~~~-~v~~ll~aA~~lqi~~   58 (76)
                      ....+.+. -+|..|+.||+|+-+| .+..+.+ .+..+++-|++++|.+
T Consensus        40 ~~g~~FiD-Rdp~~F~~IL~flR~~~~l~~~~~~~~~~l~~Ea~y~gi~~   88 (100)
T d1t1da_          40 LRNEYFFD-RNRPSFDAILYFYQSGGRLRRPVNVPLDVFSEEIKFYELGE   88 (100)
T ss_dssp             TTTEEEEC-SCSTTHHHHHHHHHTTSCCCCCTTSCHHHHHHHHHHTTCCH
T ss_pred             CCCeEEEe-cCHHHHHHHHHHHhcCCCcCCCCcccHHHHHHHHHHcCCCH
Confidence            34577774 6999999999999884 5555443 4678999999999976

>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.63  E-value=0.034  Score=27.30  Aligned_cols=25  Identities=4%  Similarity=0.239  Sum_probs=20.8

Q ss_pred             CCCeEEeCCCCHHHHHHHhhhHhcC
Q psy12679         11 EHPIVILRDVKEHDMEALLSFMYNG   35 (76)
Q Consensus        11 ~~~~i~l~~v~~~~~~~ll~f~Ytg   35 (76)
                      ....|.+++|+..+|+.+++|++-.
T Consensus        42 ~~~~Ipl~~V~s~iL~kVieyc~~H   66 (72)
T d1nexa2          42 DEIVMPVPNVRSSVLQKVIEWAEHH   66 (72)
T ss_dssp             --CEEECTTCCHHHHHHHHHHHHHT
T ss_pred             CCCcccCCCcCHHHHHHHHHHHHHc
Confidence            3457999999999999999999754

>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: Cyclin A/CDK2-associated p45, Skp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.27  E-value=0.047  Score=25.99  Aligned_cols=23  Identities=13%  Similarity=0.169  Sum_probs=20.6

Q ss_pred             CCeEEeCCCCHHHHHHHhhhHhc
Q psy12679         12 HPIVILRDVKEHDMEALLSFMYN   34 (76)
Q Consensus        12 ~~~i~l~~v~~~~~~~ll~f~Yt   34 (76)
                      ...|.+++|++..|+.+++|++-
T Consensus        35 ~~~Ipl~~V~s~iL~kVieyc~~   57 (61)
T d1fs1b2          35 MDPVPLPNVNAAILKKVIQWCTH   57 (61)
T ss_dssp             CSSEECTTCCHHHHHHHHHHHHH
T ss_pred             CCCcccCCcCHHHHHHHHHHHHH
Confidence            35799999999999999999974

>d1qpza1 a.35.1.5 (A:2-58) Purine repressor (PurR), N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: lambda repressor-like DNA-binding domains
superfamily: lambda repressor-like DNA-binding domains
family: GalR/LacI-like bacterial regulator
domain: Purine repressor (PurR), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.75  E-value=1.5  Score=20.20  Aligned_cols=36  Identities=6%  Similarity=0.145  Sum_probs=30.6

Q ss_pred             CCCCHHHHHHHhhhHhcCccccCHHhHHHHHHHHhhcCcc
Q psy12679         18 RDVKEHDMEALLSFMYNGEVRIGQDQLQEFLKTAQTLQVR   57 (76)
Q Consensus        18 ~~v~~~~~~~ll~f~Ytg~l~i~~~~v~~ll~aA~~lqi~   57 (76)
                      -|||.......|+    |.-.|++++-+.++++|..|+-.
T Consensus        10 agVS~sTVSr~ln----~~~~vs~~tr~rV~~~a~~lgY~   45 (57)
T d1qpza1          10 ANVSTTTVSHVIN----KTRFVAEETRNAVWAAIKELHYS   45 (57)
T ss_dssp             HTSCHHHHHHHHH----TCSCCCHHHHHHHHHHHHHHTCC
T ss_pred             HCcCHHHHHHHHC----CCCccCHHHHHHHHHHHHHHCCC
Confidence            4788888888776    77789999999999999999864