Psyllid ID: psy12737

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60
Protein Sequence
MFKNFACGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ
Secondary Structure (PSIPRED)
ccccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccccccccccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHEccccccccHHHHHHHHHHHHHHcccccccccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
MFKNFACGAVQLLVNfssrttsmdVQRNIESVVEKrtkdvfgpppdkklILFIDDLNMPQ
Flexible Loop (DISEMBL)
mfknfacgAVQLlvnfssrttsmdvQRNIESvvekrtkdvfgpppdkklilfiddlnmpq
Low Complexity Region (SEG)
MFKNFACGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ
Disordered region (IsUnstruct)
***NFACGAVQLLVNFSS*****************************KLILFID******
Disordered Region (DISOPRED)
********AVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ
Disordered Region (DISEMBL)
MFKNFACGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ
Disordered Region (DISPRO)
*FKNFACGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFKNFACGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	60	2.2.26 [Sep-21-2011]
Q8IVF4	4471	Dynein heavy chain 10, ax	yes	N/A	0.85	0.011	0.666	1e-15
Q9SMH3	4625	Dynein-1-alpha heavy chai	N/A	N/A	0.85	0.011	0.666	4e-14
Q9MBF8	4513	Dynein-1-beta heavy chain	N/A	N/A	0.816	0.010	0.551	3e-09
Q8VHE6	4621	Dynein heavy chain 5, axo	no	N/A	0.766	0.009	0.586	1e-08
Q8WXX0	4024	Dynein heavy chain 7, axo	no	N/A	0.8	0.011	0.5	1e-08
Q8TE73	4624	Dynein heavy chain 5, axo	no	N/A	0.866	0.011	0.528	2e-08
Q9P2D7	4330	Dynein heavy chain 1, axo	no	N/A	0.983	0.013	0.457	2e-08
Q3V0Q1	3086	Dynein heavy chain 12, ax	no	N/A	0.766	0.014	0.565	2e-08
Q63170	4057	Dynein heavy chain 7, axo	no	N/A	0.8	0.011	0.541	2e-08
Q923J6	3092	Dynein heavy chain 12, ax	no	N/A	0.766	0.014	0.565	2e-08

>sp|Q8IVF4|DYH10_HUMAN Dynein heavy chain 10, axonemal OS=Homo sapiens GN=DNAH10 PE=1 SV=4

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 46/51 (90%)

Query: 10   VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
            + L+VNFSSRTTSMD+QRN+E+ VEKRTKD +GPP  K+L++F+DD+NMP+
Sbjct: 2478 IVLMVNFSSRTTSMDIQRNLEANVEKRTKDTYGPPMGKRLLVFMDDMNMPR 2528

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly (By similarity). Probable inner arm dynein heavy chain.
Homo sapiens (taxid: 9606)

>sp|Q9SMH3|DYH1A_CHLRE Dynein-1-alpha heavy chain, flagellar inner arm I1 complex OS=Chlamydomonas reinhardtii GN=DHC1 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 10   VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
            + L VNFSSRT+S+DVQR IE   EKRTKD +GPP  K+L++FIDDLNMP+
Sbjct: 2611 IVLNVNFSSRTSSLDVQRAIEDSTEKRTKDTYGPPMGKRLLMFIDDLNMPR 2661

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for assembly of the I1 inner arm complex and its targeting to the appropriate axoneme location. Also required for phototaxis.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q9MBF8|DYH1B_CHLRE Dynein-1-beta heavy chain, flagellar inner arm I1 complex OS=Chlamydomonas reinhardtii GN=DHC10 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/49 (55%), Positives = 36/49 (73%)

Query: 12   LLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
            + +NFS++T+S  +Q  IE  +EKRTK VF P   K+L+ FIDDLNMPQ
Sbjct: 2522 MTINFSAQTSSNSLQDTIEGKLEKRTKGVFAPAGGKRLVCFIDDLNMPQ 2570

Force generating protein of eukaryotic cilia and flagella. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for assembly of the I1 inner arm complex and its targeting to the appropriate axoneme location. Also required for phototaxis.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8VHE6|DYH5_MOUSE Dynein heavy chain 5, axonemal OS=Mus musculus GN=Dnah5 PE=1 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query: 14   VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            +NFSS TT +  QR IES V+KR    +GPP  KK+ +FIDDLNMP
Sbjct: 2614 LNFSSATTPVMFQRTIESYVDKRMGTTYGPPAGKKMAVFIDDLNMP 2659

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for structural and functional integrity of the cilia of ependymal cells lining the brain ventricles.

Mus musculus (taxid: 10090)

>sp|Q8WXX0|DYH7_HUMAN Dynein heavy chain 7, axonemal OS=Homo sapiens GN=DNAH7 PE=1 SV=2

 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/48 (50%), Positives = 37/48 (77%)

Query: 12   LLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            LL+NFS++TT+   Q  + S ++KR K VFGPP  K++++F+DD+NMP
Sbjct: 2002 LLINFSAQTTAAQTQNIVMSKLDKRRKGVFGPPLGKRMVVFVDDVNMP 2049

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Homo sapiens (taxid: 9606)

>sp|Q8TE73|DYH5_HUMAN Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 36/53 (67%), Gaps = 1/53 (1%)

Query: 7    CGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            C  ++ L NFSS TT +  QR IES V+KR    +GPP  KK+ +FIDD+NMP
Sbjct: 2611 CHMIKSL-NFSSATTPLMFQRTIESYVDKRMGTTYGPPAGKKMTVFIDDVNMP 2662

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Required for structural and functional integrity of the cilia of ependymal cells lining the brain ventricles.

Homo sapiens (taxid: 9606)

>sp|Q9P2D7|DYH1_HUMAN Dynein heavy chain 1, axonemal OS=Homo sapiens GN=DNAH1 PE=2 SV=4

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 37/59 (62%)

Query: 1    MFKNFACGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            + KN A   +   + FS+RT++   Q  I+S ++KR K VFGPP  +  I FIDDLNMP
Sbjct: 2241 LLKNLALDYISHFLTFSARTSANQTQDFIDSKLDKRRKGVFGPPLGRNFIFFIDDLNMP 2299

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Homo sapiens (taxid: 9606)

>sp|Q3V0Q1|DYH12_MOUSE Dynein heavy chain 12, axonemal OS=Mus musculus GN=Dnah12 PE=1 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 14   VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            VNFS+RT++  VQ  I + ++KR K VFGPP  KK ++FIDD+NMP
Sbjct: 1914 VNFSARTSANQVQNIIMARLDKRRKGVFGPPMGKKCVIFIDDMNMP 1959

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Mus musculus (taxid: 10090)

>sp|Q63170|DYH7_RAT Dynein heavy chain 7, axonemal OS=Rattus norvegicus GN=Dnah7 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 37/48 (77%)

Query: 12   LLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            L+VNFS++TT+   Q  I S ++KR K VFGPP  K++I+F+DD+NMP
Sbjct: 2035 LIVNFSAQTTAAQTQNIIMSKLDKRRKGVFGPPLGKRMIVFVDDVNMP 2082

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Rattus norvegicus (taxid: 10116)

>sp|Q923J6|DYH12_RAT Dynein heavy chain 12, axonemal OS=Rattus norvegicus GN=Dnah12 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 35/46 (76%)

Query: 14   VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            VNFS+RT++  VQ  I + ++KR K VFGPP  KK ++FIDD+NMP
Sbjct: 1920 VNFSARTSANQVQNIIMARLDKRRKGVFGPPMGKKCVVFIDDMNMP 1965

Force generating protein of respiratory cilia. Produces force towards the minus ends of microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP. Involved in sperm motility; implicated in sperm flagellar assembly.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
383849047	4926	PREDICTED: dynein heavy chain 10, axonem	0.816	0.009	0.836	2e-17
380012717	4856	PREDICTED: LOW QUALITY PROTEIN: dynein h	0.816	0.010	0.775	7e-17
340718948	4900	PREDICTED: dynein heavy chain 10, axonem	0.816	0.01	0.795	1e-16
350419926	4896	PREDICTED: dynein heavy chain 10, axonem	0.816	0.010	0.795	1e-16
307174812	4794	Dynein heavy chain 10, axonemal [Campono	0.816	0.010	0.795	2e-16
328788110	4882	PREDICTED: dynein heavy chain 10, axonem	0.816	0.010	0.755	5e-16
332028786	2997	Dynein heavy chain 10, axonemal [Acromyr	0.816	0.016	0.816	5e-16
322788571	2327	hypothetical protein SINV_09493 [Solenop	0.816	0.021	0.795	5e-16
242015590	4870	ciliary dynein heavy chain, putative [Pe	0.85	0.010	0.784	2e-15
198435709	4611	PREDICTED: similar to hCG1811879 [Ciona	0.85	0.011	0.705	3e-15

>gi|383849047|ref|XP_003700158.1| PREDICTED: dynein heavy chain 10, axonemal-like [Megachile rotundata]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 47/49 (95%)

Query: 11   QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            QLL+NFSSRTTSMDVQRNIESVVEKRT++ +GPPP KKL+LFIDD+NMP
Sbjct: 2932 QLLINFSSRTTSMDVQRNIESVVEKRTRETYGPPPGKKLLLFIDDMNMP 2980

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380012717|ref|XP_003690424.1| PREDICTED: LOW QUALITY PROTEIN: dynein heavy chain 10, axonemal-like [Apis florea]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 48/49 (97%)

Query: 11   QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            QL++NFSSRTTSMDVQRNIE+VVEKRT++++GPPP KKL++FIDD+NMP
Sbjct: 2863 QLMINFSSRTTSMDVQRNIEAVVEKRTREIYGPPPGKKLLIFIDDMNMP 2911

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718948|ref|XP_003397922.1| PREDICTED: dynein heavy chain 10, axonemal-like [Bombus terrestris]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 47/49 (95%)

Query: 11   QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            QLL+NFSSRTTSMDVQ+NIE+VVEKRT++ +GPPP KKL+LFIDD+NMP
Sbjct: 2906 QLLINFSSRTTSMDVQKNIEAVVEKRTRETYGPPPGKKLLLFIDDMNMP 2954

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419926|ref|XP_003492347.1| PREDICTED: dynein heavy chain 10, axonemal-like [Bombus impatiens]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 47/49 (95%)

Query: 11   QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            QLL+NFSSRTTSMDVQ+NIE+VVEKRT++ +GPPP KKL+LFIDD+NMP
Sbjct: 2902 QLLINFSSRTTSMDVQKNIEAVVEKRTRETYGPPPGKKLLLFIDDMNMP 2950

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174812|gb|EFN65120.1| Dynein heavy chain 10, axonemal [Camponotus floridanus]

 Score = 90.1 bits (222), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/49 (79%), Positives = 48/49 (97%)

Query: 11   QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            QLL+NFSSRTTS+DVQRNIESVVEKR++++FGPPP KKL++FIDD+NMP
Sbjct: 2803 QLLLNFSSRTTSIDVQRNIESVVEKRSREIFGPPPGKKLVVFIDDMNMP 2851

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788110|ref|XP_003251067.1| PREDICTED: dynein heavy chain 10, axonemal-like [Apis mellifera]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/49 (75%), Positives = 46/49 (93%)

Query: 11   QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            QL++NFSSRTTSMDVQRNIE+ VEKRT++ +GPPP KKL++FIDD+NMP
Sbjct: 2889 QLMINFSSRTTSMDVQRNIEAAVEKRTRETYGPPPGKKLLIFIDDMNMP 2937

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028786|gb|EGI68815.1| Dynein heavy chain 10, axonemal [Acromyrmex echinatior]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/49 (81%), Positives = 46/49 (93%)

Query: 11   QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
            QLL+NFSSRTTSMDVQ NIESVVEKR+++VFG PP KKLI+FIDD+NMP
Sbjct: 1037 QLLINFSSRTTSMDVQTNIESVVEKRSREVFGAPPGKKLIIFIDDMNMP 1085

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322788571|gb|EFZ14199.1| hypothetical protein SINV_09493 [Solenopsis invicta]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 47/49 (95%)

Query: 11  QLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMP 59
           QLL+NFSSRTTSMDVQRNIESVV+KR+++V+G PP KKLI+FIDD+NMP
Sbjct: 371 QLLINFSSRTTSMDVQRNIESVVDKRSREVYGAPPGKKLIVFIDDMNMP 419

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015590|ref|XP_002428436.1| ciliary dynein heavy chain, putative [Pediculus humanus corporis] gi|212513048|gb|EEB15698.1| ciliary dynein heavy chain, putative [Pediculus humanus corporis]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/51 (78%), Positives = 45/51 (88%)

Query: 10   VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
            +QL VNFSSRT SMDVQ+NIES VEKRTKD++GPP  KK I+FIDDLNMPQ
Sbjct: 2877 LQLNVNFSSRTNSMDVQKNIESAVEKRTKDIYGPPIGKKFIVFIDDLNMPQ 2927

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198435709|ref|XP_002125770.1| PREDICTED: similar to hCG1811879 [Ciona intestinalis]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/51 (70%), Positives = 47/51 (92%)

Query: 10   VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
            + L +NFSSRTTSMDVQRN+E+ VEKRTKD++GPPP K+L++F+DD+NMPQ
Sbjct: 2617 LMLHINFSSRTTSMDVQRNLEANVEKRTKDLYGPPPGKRLVVFMDDMNMPQ 2667

Source: Ciona intestinalis

Species: Ciona intestinalis

Genus: Ciona

Family: Cionidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
UNIPROTKB|Q8IVF4	4471	DNAH10 "Dynein heavy chain 10,	0.85	0.011	0.666	2.6e-13
UNIPROTKB|F1RFM8	4479	DNAH10 "Uncharacterized protei	0.85	0.011	0.666	2.6e-13
UNIPROTKB|F1NQP3	4033	F1NQP3 "Uncharacterized protei	0.816	0.012	0.693	3.8e-13
UNIPROTKB|F1LR86	3322	Dnah10 "Protein Dnah10" [Rattu	0.85	0.015	0.647	3.9e-13
UNIPROTKB|J9JHE6	4028	DNAH10 "Uncharacterized protei	0.85	0.012	0.647	6.1e-13
UNIPROTKB|F1PMG2	4291	DNAH10 "Uncharacterized protei	0.85	0.011	0.647	6.6e-13
UNIPROTKB|E2RMJ8	4436	DNAH10 "Uncharacterized protei	0.85	0.011	0.647	6.8e-13
UNIPROTKB|F1MSP8	4470	Bt.11479 "Uncharacterized prot	0.85	0.011	0.647	8.7e-13
ZFIN|ZDB-GENE-060531-163	3330	si:dkeyp-86b9.1 "si:dkeyp-86b9	0.85	0.015	0.647	1e-12
FB|FBgn0013813	5080	Dhc98D "Dynein heavy chain at	0.85	0.010	0.627	3.9e-11

UNIPROTKB|Q8IVF4 DNAH10 "Dynein heavy chain 10, axonemal" [Homo sapiens (taxid:9606)]

 Score = 194 (73.4 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 34/51 (66%), Positives = 46/51 (90%)

Query:    10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
             + L+VNFSSRTTSMD+QRN+E+ VEKRTKD +GPP  K+L++F+DD+NMP+
Sbjct:  2478 IVLMVNFSSRTTSMDIQRNLEANVEKRTKDTYGPPMGKRLLVFMDDMNMPR 2528

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

UNIPROTKB|F1RFM8 DNAH10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 194 (73.4 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 34/51 (66%), Positives = 46/51 (90%)

Query:    10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
             + L+VNFSSRTTSMD+QRN+E+ VEKRTKD +GPP  K+L++F+DD+NMP+
Sbjct:  2479 IVLMVNFSSRTTSMDIQRNLEANVEKRTKDTYGPPMGKRLLVFMDDMNMPK 2529

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1NQP3 F1NQP3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 192 (72.6 bits), Expect = 3.8e-13, P = 3.8e-13
 Identities = 34/49 (69%), Positives = 45/49 (91%)

Query:    12 LLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
             L++NFSSRTTSMD+QRN+E+ VEKR+KD +GPP  K+LI+F+DDLNMP+
Sbjct:  2323 LVINFSSRTTSMDIQRNLETNVEKRSKDAYGPPMGKRLIIFMDDLNMPR 2371

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1LR86 Dnah10 "Protein Dnah10" [Rattus norvegicus (taxid:10116)]

 Score = 191 (72.3 bits), Expect = 3.9e-13, P = 3.9e-13
 Identities = 33/51 (64%), Positives = 46/51 (90%)

Query:    10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
             + L+VNFSSRTTS+D+QRN+E+ VEKRTKD +GPP  K+L++F+DD+NMP+
Sbjct:  1326 IVLMVNFSSRTTSLDIQRNLEANVEKRTKDTYGPPMGKRLLVFMDDMNMPK 1376

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

UNIPROTKB|J9JHE6 DNAH10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 6.1e-13, P = 6.1e-13
 Identities = 33/51 (64%), Positives = 45/51 (88%)

Query:    10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
             + L+ NFSSRTTSMD+QRN+E+ VEKRTKD +GPP  K+L++F+DD+NMP+
Sbjct:  2035 IVLMANFSSRTTSMDIQRNLEANVEKRTKDTYGPPMGKRLLVFMDDMNMPK 2085

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1PMG2 DNAH10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 6.6e-13, P = 6.6e-13
 Identities = 33/51 (64%), Positives = 45/51 (88%)

Query:    10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
             + L+ NFSSRTTSMD+QRN+E+ VEKRTKD +GPP  K+L++F+DD+NMP+
Sbjct:  2298 IVLMANFSSRTTSMDIQRNLEANVEKRTKDTYGPPMGKRLLVFMDDMNMPK 2348

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|E2RMJ8 DNAH10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 6.8e-13, P = 6.8e-13
 Identities = 33/51 (64%), Positives = 45/51 (88%)

Query:    10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
             + L+ NFSSRTTSMD+QRN+E+ VEKRTKD +GPP  K+L++F+DD+NMP+
Sbjct:  2439 IVLMANFSSRTTSMDIQRNLEANVEKRTKDTYGPPMGKRLLVFMDDMNMPK 2489

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1MSP8 Bt.11479 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 189 (71.6 bits), Expect = 8.7e-13, P = 8.7e-13
 Identities = 33/51 (64%), Positives = 46/51 (90%)

Query:    10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
             + L+V+FSSRTTSMD+QRN+E+ VEKRTKD +GPP  K+L++F+DD+NMP+
Sbjct:  2477 IVLMVSFSSRTTSMDIQRNLEANVEKRTKDTYGPPMGKRLLVFMDDMNMPK 2527

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

ZFIN|ZDB-GENE-060531-163 si:dkeyp-86b9.1 "si:dkeyp-86b9.1" [Danio rerio (taxid:7955)]

 Score = 187 (70.9 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 33/51 (64%), Positives = 44/51 (86%)

Query:    10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
             + + +NFSSRTTSMD+QR +E+ VEKRTKD FGPP  K+L++F+DDLNMP+
Sbjct:  1331 IMMTINFSSRTTSMDLQRTLEANVEKRTKDTFGPPMGKRLLVFMDDLNMPR 1381

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

FB|FBgn0013813 Dhc98D "Dynein heavy chain at 89D" [Drosophila melanogaster (taxid:7227)]

 Score = 174 (66.3 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 32/51 (62%), Positives = 41/51 (80%)

Query:    10 VQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
             V L +NFSSRT+S+DVQ  +E+ VEKRTKD +GPP  K++  FIDD+NMPQ
Sbjct:  3035 VILNINFSSRTSSLDVQHTLEAAVEKRTKDTYGPPMGKRIACFIDDMNMPQ 3085

GO:0005875 "microtubule associated complex" evidence=ISS;NAS

GO:0003774 "motor activity" evidence=ISS

GO:0005858 "axonemal dynein complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=IEA;ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8IVF4	DYH10_HUMAN	No assigned EC number	0.6666	0.85	0.0114	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	60
pfam12775	272	pfam12775, AAA_7, P-loop containing dynein motor r	1e-09

>gnl|CDD|193251 pfam12775, AAA_7, P-loop containing dynein motor region D3

 Score = 51.1 bits (122), Expect = 1e-09
 Identities = 22/47 (46%), Positives = 31/47 (65%)

Query: 14  VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ 60
           V F+  TTS  +Q  +E  +EK+    +GPP  KKL+ FIDD+NMP+
Sbjct: 67  VPFNYYTTSAMLQAVLEKPLEKKAGRNYGPPGTKKLVYFIDDMNMPE 113

the 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This particular family is the D3 and is an ATP binding site. Length = 272

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	60
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	99.78
KOG3595|consensus	1395		99.17
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	96.17
cd03714	119	RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) oc	84.25
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	84.18
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	82.7

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=99.78  E-value=5.7e-20  Score=123.32  Aligned_cols=55  Identities=55%  Similarity=0.814  Sum_probs=49.2

Q ss_pred             ccCcceEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccCCCCC
Q psy12737          6 ACGAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ   60 (60)
Q Consensus         6 ~~~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDlNmP~   60 (60)
                      ++.|.+..++||++|+|..+|+.||++++||+|++||||.||++|+||||+|||+
T Consensus        59 ~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~  113 (272)
T PF12775_consen   59 SDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQ  113 (272)
T ss_dssp             TCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S-
T ss_pred             ccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCC
Confidence            3457788999999999999999999999999999999999999999999999995

>KOG3595|consensus

Probab=99.17  E-value=1.8e-11  Score=95.84  Aligned_cols=47  Identities=53%  Similarity=0.820  Sum_probs=46.0

Q ss_pred             EecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccCCCCC
Q psy12737         14 VNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLNMPQ   60 (60)
Q Consensus        14 i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDlNmP~   60 (60)
                      +|||++||++.+|.+++++++|++++.||||.+|.+++||||+|||.
T Consensus       159 ~~fs~~ts~~~~q~~~~~~~~k~~~~~~~~~~~~~~~~f~ddinmp~  205 (1395)
T KOG3595|consen  159 LNFSSVTSSELLQEIIESKLDKRRSGNYGPPLGKKLVLFVDDINMPA  205 (1395)
T ss_pred             EeeeeeccHHHHHHHHHHHHHHhcccCCCCCCCceeEEEEeccCCch
Confidence            99999999999999999999999999999999999999999999994

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=96.17  E-value=0.0071  Score=50.48  Aligned_cols=52  Identities=29%  Similarity=0.343  Sum_probs=42.7

Q ss_pred             cceEEEecCcccCHHHHHHHHhhhceecc--C-CeeeC-CCCcEEEEEEccCCCCC
Q psy12737          9 AVQLLVNFSSRTTSMDVQRNIESVVEKRT--K-DVFGP-PPDKKLILFIDDLNMPQ   60 (60)
Q Consensus         9 ~~~~~i~fSa~Tts~~~q~~ie~kl~kr~--~-~~~gp-p~gk~~v~FvDDlNmP~   60 (60)
                      +.++.+|||-.|++...-..+|...++=+  | .++-| |.-|-+|+|+|+||||.
T Consensus      1521 ~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeInLp~ 1576 (3164)
T COG5245        1521 TEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEINLPY 1576 (3164)
T ss_pred             eeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeeccCCcc
Confidence            56899999999999999999999988744  2 34455 46688999999999994

>cd03714 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons

Probab=84.25  E-value=2.2  Score=24.73  Aligned_cols=44  Identities=11%  Similarity=0.123  Sum_probs=31.9

Q ss_pred             CcceEEEecCcccCHHHHHHHHhhhceeccCCeeeCCCCcEEEEEEccCC
Q psy12737          8 GAVQLLVNFSSRTTSMDVQRNIESVVEKRTKDVFGPPPDKKLILFIDDLN   57 (60)
Q Consensus         8 ~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~~~~~gpp~gk~~v~FvDDlN   57 (60)
                      .|....++|--..++.-.|+.+..-+..-+      ..+..++.|+||+.
T Consensus        28 ~~~~~~mp~Gl~~sp~~f~~~~~~i~~~~~------~~~~~v~~Y~DDil   71 (119)
T cd03714          28 TYQFKALPFGLSLAPRVFTKVVEALLAPLR------LLGVRIFSYLDDLL   71 (119)
T ss_pred             cEEEEecCCcccchHHHHHHHHHHHHHHhh------cCCeEEEEEecCeE
Confidence            456677889988999999987776654322      22457889999984

Members of the subfamily include the Dictyostelium DIRS-1, Volvox carteri kangaroo, and Panagrellus redivivus PAT elements. These elements differ from LTR and conventional non-LTR retrotransposons. They contain split direct repeat (SDR) termini, and have been proposed to integrate via double-stranded closed-circle DNA intermediates assisted by an encoded recombinase which is similar to gamma-site-specific integrase.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=84.18  E-value=0.4  Score=28.15  Aligned_cols=49  Identities=22%  Similarity=0.168  Sum_probs=28.8

Q ss_pred             ceEEEecCcccCHHHHHHHHhhh--ceeccCCeeeCCCCcEEEEEEccCCC
Q psy12737         10 VQLLVNFSSRTTSMDVQRNIESV--VEKRTKDVFGPPPDKKLILFIDDLNM   58 (60)
Q Consensus        10 ~~~~i~fSa~Tts~~~q~~ie~k--l~kr~~~~~gpp~gk~~v~FvDDlNm   58 (60)
                      -...+++++.|+...+.....-.  ..+...+.+.....+..++++||+|.
T Consensus        26 ~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~   76 (139)
T PF07728_consen   26 PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINR   76 (139)
T ss_dssp             EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG
T ss_pred             ceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCccc
Confidence            46679999999999887433321  11111222222223678999999985

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=82.70  E-value=1.4  Score=29.13  Aligned_cols=13  Identities=38%  Similarity=0.925  Sum_probs=11.1

Q ss_pred             CCcEEEEEEccCC
Q psy12737         45 PDKKLILFIDDLN   57 (60)
Q Consensus        45 ~gk~~v~FvDDlN   57 (60)
                      .++++|+||||+-
T Consensus       170 ~~~~iViiIDdLD  182 (325)
T PF07693_consen  170 SKKRIVIIIDDLD  182 (325)
T ss_pred             CCceEEEEEcchh
Confidence            6789999999973

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	60
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	1e-14
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	4e-14

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score = 64.5 bits (157), Expect = 1e-14
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 4/51 (7%)

Query: 14   VNFSSRTTSMDVQRNIESVVEKRTKD---VFGPPPD-KKLILFIDDLNMPQ 60
            +NFS  TT+  +   +       T        P  D K L+LF D++N+P+
Sbjct: 1299 INFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPK 1349

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 63.4 bits (154), Expect = 4e-14
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 12   LLVNFSSRTTSMDVQRNIESVVEKRT----KDVFGPPPD-KKLILFIDDLNMPQ 60
            + +NFSS TT   + +  +   E +     + V  P    K L++F D++N+P 
Sbjct: 1334 VSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPS 1387

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	60
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	99.3
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	99.08

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=99.30  E-value=2.6e-12  Score=104.82  Aligned_cols=57  Identities=28%  Similarity=0.473  Sum_probs=48.0

Q ss_pred             cccccCcceEEEecCcccCHHHHHHHHhhhceecc----CCeeeCCC-CcEEEEEEccCCCCC
Q psy12737          3 KNFACGAVQLLVNFSSRTTSMDVQRNIESVVEKRT----KDVFGPPP-DKKLILFIDDLNMPQ   60 (60)
Q Consensus         3 ~~~~~~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~----~~~~gpp~-gk~~v~FvDDlNmP~   60 (60)
                      ..++ ++....||||++|++..+|..+++++++|+    |..|||+. ||++|+||||+|||+
T Consensus      1326 ~~l~-~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~ 1387 (3245)
T 3vkg_A         1326 RAFP-DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPS 1387 (3245)
T ss_dssp             GGCT-TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCC
T ss_pred             HhCC-CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCC
Confidence            3444 356789999999999999999999999876    34677774 999999999999995

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=99.08  E-value=1.1e-10  Score=94.45  Aligned_cols=53  Identities=26%  Similarity=0.318  Sum_probs=46.2

Q ss_pred             CcceEEEecCcccCHHHHHHHHhhhceecc---CCeeeCC-CCcEEEEEEccCCCCC
Q psy12737          8 GAVQLLVNFSSRTTSMDVQRNIESVVEKRT---KDVFGPP-PDKKLILFIDDLNMPQ   60 (60)
Q Consensus         8 ~~~~~~i~fSa~Tts~~~q~~ie~kl~kr~---~~~~gpp-~gk~~v~FvDDlNmP~   60 (60)
                      .+....+|||++|++..+|+.+++++++++   +..|||+ .||++|+||||+|||+
T Consensus      1293 ~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~ 1349 (2695)
T 4akg_A         1293 LYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPK 1349 (2695)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSC
T ss_pred             CCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEeccccccc
Confidence            467789999999999999999999998643   5567885 8999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	60
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	82.23

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=82.23  E-value=0.55  Score=26.17  Aligned_cols=24  Identities=13%  Similarity=0.200  Sum_probs=18.1

Q ss_pred             ccCCeeeCCCCcEEEEEEccCCCC
Q psy12737         36 RTKDVFGPPPDKKLILFIDDLNMP   59 (60)
Q Consensus        36 r~~~~~gpp~gk~~v~FvDDlNmP   59 (60)
                      ...-+||++.+|+.|+..-|.+.|
T Consensus        16 ~~~~i~g~~~ak~~I~~FsD~~CP   39 (150)
T d1t3ba1          16 DEMIVYPAKNEKHVVTVFMDITCH   39 (150)
T ss_dssp             GGSEEECCTTCSEEEEEEECTTCH
T ss_pred             ccceEECCCCCCEEEEEEECCCCH
Confidence            346789999999876666677776