Psyllid ID: psy12745

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MTDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSYPVKSLMGAPPTSICALLMLFGLKELTVEERVITRPTSIQEIEEEGDDMTHSMVSGGCE
Secondary Structure (PSIPRED)
ccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHccccccHHHHHccccccHHHHHHHccccHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEHHHHcHHHHHHHHHHHHHHHHHHHHcccccEEEEcccEEEcHHHHEHEHHHHHHHHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHcccccccccHHEEcccccccccccccEEEcccccEEEEEEEccccHHHHHcccccHHHHHHccccc
Coil and Loop (DISEMBL)
mtdisetkrdtKKIIYWRRVdwnrshafshtpfvKGLVIAYFIIpikwtypvfDFFLMCSWRIFLIVSTFPSLAGALLVFfipespkflmthgrsddaLDVFQSMYarntgkpkdsypvkslmgapptSICALLMLFGlkeltveervitrptsiQEIEEegddmthsmvsggce
Flexible Loop (DISEMBL)
mtdisetkrdtkkiiywrrvdwnrshAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSYPVKSLMGAPPTSICALLMLFGLKeltveervitrptsiqeieeegddmthSMVSGGCE
Low Complexity Region (SEG)
MTDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSYPVKSLMGAPPTSICALLMLFGLKELTVEERVITRPTSIQEIEEEGDDMTHSMVSGGCE
Disordered region (IsUnstruct)
***********KKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDALDVFQSMY***************LMGAPPTSICALLMLFGLKELTVEERVIT*************************
Disordered Region (DISOPRED)
MTDI***KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSYPV*************************************************MVSGG**
Disordered Region (DISEMBL)
*********DTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSYPVKSLMGAPPTSICALLMLFGLKELTVEERVITRPTSIQEIEEE**************
Disordered Region (DISPRO)
********RDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSYPVKSLMGAPPTSICALLMLFGLKELTVEERVITRPTSIQEIEE***************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSYPVKSLMGAPPTSICALLMLFGLKELTVEERVITRPTSIQEIEEEGDDMTHSMVSGGCE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q69ZS6	727	Synaptic vesicle glycopro	yes	N/A	0.485	0.116	0.303	5e-07
Q9Z2I6	727	Synaptic vesicle glycopro	yes	N/A	0.485	0.116	0.303	5e-07
Q496J9	727	Synaptic vesicle glycopro	yes	N/A	0.485	0.116	0.303	5e-07
Q63564	683	Synaptic vesicle glycopro	no	N/A	0.485	0.124	0.292	8e-06
Q8BG39	683	Synaptic vesicle glycopro	no	N/A	0.485	0.124	0.292	8e-06
Q7L1I2	683	Synaptic vesicle glycopro	no	N/A	0.485	0.124	0.292	9e-06
Q29397	742	Synaptic vesicle glycopro	no	N/A	0.491	0.115	0.3	2e-05
Q9JIS5	742	Synaptic vesicle glycopro	no	N/A	0.491	0.115	0.3	2e-05
Q4R4X3	742	Synaptic vesicle glycopro	N/A	N/A	0.491	0.115	0.3	2e-05
Q02563	742	Synaptic vesicle glycopro	no	N/A	0.491	0.115	0.3	2e-05

>sp|Q69ZS6|SV2C_MOUSE Synaptic vesicle glycoprotein 2C OS=Mus musculus GN=Sv2c PE=1 SV=2

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 38  VIAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSD 96
            +A+ IIP   W++ +   +   SWR+F+IV   P ++  + + F+PESP+FL+  G+ D
Sbjct: 295 AMAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHD 354

Query: 97  DA---LDVFQSMYARNTGKPKDSYPVKSL 122
           +A   L +      R  G+P+  + V  +
Sbjct: 355 EAWMILKLIHDTNMRARGQPEKVFTVNKI 383

Receptor for the botulinium neurotoxin type A/BOTA.
Mus musculus (taxid: 10090)

>sp|Q9Z2I6|SV2C_RAT Synaptic vesicle glycoprotein 2C OS=Rattus norvegicus GN=Sv2c PE=1 SV=1

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 38  VIAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSD 96
            +A+ IIP   W++ +   +   SWR+F+IV   P ++  + + F+PESP+FL+  G+ D
Sbjct: 295 AMAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHD 354

Query: 97  DA---LDVFQSMYARNTGKPKDSYPVKSL 122
           +A   L +      R  G+P+  + V  +
Sbjct: 355 EAWMILKLIHDTNMRARGQPEKVFTVNKI 383

Receptor for the botulinium neurotoxin type A/BOTA.

Rattus norvegicus (taxid: 10116)

>sp|Q496J9|SV2C_HUMAN Synaptic vesicle glycoprotein 2C OS=Homo sapiens GN=SV2C PE=2 SV=1

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 4/89 (4%)

Query: 38  VIAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSD 96
            +A+ IIP   W++ +   +   SWR+F+IV   P ++  + + F+PESP+FL+  G+ D
Sbjct: 295 AMAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHD 354

Query: 97  DA---LDVFQSMYARNTGKPKDSYPVKSL 122
           +A   L +      R  G+P+  + V  +
Sbjct: 355 EAWMILKLIHDTNMRARGQPEKVFTVNKI 383

Plays a role in the control of regulated secretion in neural and endocrine cells, enhancing selectively low-frequency neurotransmission. Positively regulates vesicle fusion by maintaining the readily releasable pool of secretory vesicles.

Homo sapiens (taxid: 9606)

>sp|Q63564|SV2B_RAT Synaptic vesicle glycoprotein 2B OS=Rattus norvegicus GN=Sv2b PE=1 SV=1

 Score = 50.1 bits (118), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 38  VIAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSD 96
            +A+ IIP   W + +   +   SWR+F+IV   P+    + + F+PESP+FL+  G+ D
Sbjct: 252 AMAWSIIPHYGWGFSMGTNYHFHSWRVFVIVCALPATVSMVALKFMPESPRFLLEMGKHD 311

Query: 97  DALDVFQSMYARN---TGKPKDSYPVKSL 122
           +A  + + ++  N    G P+  + V  +
Sbjct: 312 EAWMILKQVHDTNMRAKGTPEKVFTVSHI 340

Receptor for the botulinium neurotoxin type A/BOTA.

Rattus norvegicus (taxid: 10116)

>sp|Q8BG39|SV2B_MOUSE Synaptic vesicle glycoprotein 2B OS=Mus musculus GN=Sv2b PE=1 SV=1

 Score = 50.1 bits (118), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 38  VIAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSD 96
            +A+ IIP   W + +   +   SWR+F+IV   P+    + + F+PESP+FL+  G+ D
Sbjct: 252 AMAWSIIPHYGWGFSMGTNYHFHSWRVFVIVCALPATVSMVALKFMPESPRFLLEMGKHD 311

Query: 97  DALDVFQSMYARN---TGKPKDSYPVKSL 122
           +A  + + ++  N    G P+  + V  +
Sbjct: 312 EAWMILKQVHDTNMRAKGTPEKVFTVSHI 340

Receptor for the botulinium neurotoxin type A/BOTA.

Mus musculus (taxid: 10090)

>sp|Q7L1I2|SV2B_HUMAN Synaptic vesicle glycoprotein 2B OS=Homo sapiens GN=SV2B PE=2 SV=1

 Score = 49.7 bits (117), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 38  VIAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSD 96
            +A+ IIP   W + +   +   SWR+F+IV   P     + + F+PESP+FL+  G+ D
Sbjct: 252 AMAWSIIPHYGWGFSMGTNYHFHSWRVFVIVCALPCTVSMVALKFMPESPRFLLEMGKHD 311

Query: 97  DALDVFQSMYARN---TGKPKDSYPVKSL 122
           +A  + + ++  N    G P+  + V ++
Sbjct: 312 EAWMILKQVHDTNMRAKGTPEKVFTVSNI 340

Probably plays a role in the control of regulated secretion in neural and endocrine cells.

Homo sapiens (taxid: 9606)

>sp|Q29397|SV2A_BOVIN Synaptic vesicle glycoprotein 2A OS=Bos taurus GN=SV2A PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 34  VKGLVIAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTH 92
           V    +A+ IIP   W++ +   +   SWR+F++V  FPS+     +   PESP+F + +
Sbjct: 305 VYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLEN 364

Query: 93  GRSDDALDVFQSMY---ARNTGKPKDSYPV 119
           G+ D+A  V + ++    R  G P+  + V
Sbjct: 365 GKHDEAWMVLKQVHDTNMRAKGHPERVFSV 394

Plays a role in the control of regulated secretion in neural and endocrine cells, enhancing selectively low-frequency neurotransmission. Positively regulates vesicle fusion by maintaining the readily releasable pool of secretory vesicles.

Bos taurus (taxid: 9913)

>sp|Q9JIS5|SV2A_MOUSE Synaptic vesicle glycoprotein 2A OS=Mus musculus GN=Sv2a PE=1 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 34  VKGLVIAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTH 92
           V    +A+ IIP   W++ +   +   SWR+F++V  FPS+     +   PESP+F + +
Sbjct: 305 VYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLEN 364

Query: 93  GRSDDALDVFQSMY---ARNTGKPKDSYPV 119
           G+ D+A  V + ++    R  G P+  + V
Sbjct: 365 GKHDEAWMVLKQVHDTNMRAKGHPERVFSV 394

Receptor for the botulinium neurotoxin type A/BOTA.

Mus musculus (taxid: 10090)

>sp|Q4R4X3|SV2A_MACFA Synaptic vesicle glycoprotein 2A OS=Macaca fascicularis GN=SV2A PE=2 SV=1

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 34  VKGLVIAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTH 92
           V    +A+ IIP   W++ +   +   SWR+F++V  FPS+     +   PESP+F + +
Sbjct: 305 VYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLEN 364

Query: 93  GRSDDALDVFQSMYARN---TGKPKDSYPV 119
           G+ D+A  V + ++  N    G P+  + V
Sbjct: 365 GKHDEAWMVLKQVHDTNMRAKGHPERVFSV 394

Plays a role in the control of regulated secretion in neural and endocrine cells, enhancing selectively low-frequency neurotransmission. Positively regulates vesicle fusion by maintaining the readily releasable pool of secretory vesicles.

Macaca fascicularis (taxid: 9541)

>sp|Q02563|SV2A_RAT Synaptic vesicle glycoprotein 2A OS=Rattus norvegicus GN=Sv2a PE=1 SV=2

 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 34  VKGLVIAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTH 92
           V    +A+ IIP   W++ +   +   SWR+F++V  FPS+     +   PESP+F + +
Sbjct: 305 VYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVLVCAFPSVFAIGALTTQPESPRFFLEN 364

Query: 93  GRSDDALDVFQSMYARN---TGKPKDSYPV 119
           G+ D+A  V + ++  N    G P+  + V
Sbjct: 365 GKHDEAWMVLKQVHDTNMRAKGHPERVFSV 394

Receptor for the botulinium neurotoxin type A/BOTA.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
345483310	521	PREDICTED: synaptic vesicle glycoprotein	0.56	0.188	0.46	8e-18
380030801	634	PREDICTED: synaptic vesicle glycoprotein	0.52	0.143	0.478	6e-17
195451649	572	GK13908 [Drosophila willistoni] gi|19416	0.52	0.159	0.417	2e-16
91076170	556	PREDICTED: similar to synaptic vesicle p	0.502	0.158	0.472	2e-16
307206948	500	Synaptic vesicle glycoprotein 2B [Harpeg	0.485	0.17	0.476	3e-16
328792189	534	PREDICTED: synaptic vesicle glycoprotein	0.52	0.170	0.467	3e-16
332374370	532	unknown [Dendroctonus ponderosae]	0.485	0.159	0.435	1e-15
156549453	516	PREDICTED: synaptic vesicle glycoprotein	0.48	0.162	0.494	1e-15
198471039	567	GA23013 [Drosophila pseudoobscura pseudo	0.52	0.160	0.445	2e-15
195055494	878	GH17356 [Drosophila grimshawi] gi|193892	0.514	0.102	0.439	2e-15

>gi|345483310|ref|XP_001606599.2| PREDICTED: synaptic vesicle glycoprotein 2B-like [Nasonia vitripennis]

 Score = 95.5 bits (236), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/100 (46%), Positives = 71/100 (71%), Gaps = 2/100 (2%)

Query: 34  VKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHG 93
           + G V+A  IIP  W++ V+  F + SW+I+L VS  P+L G LL+ F PESPKFLM+ G
Sbjct: 185 IIGSVLALVIIPQDWSF-VYGNFYIRSWQIYLAVSGLPTLVGTLLLGFFPESPKFLMSQG 243

Query: 94  RSDDALDVFQSMYARNTGKPKDSYPVKSLMGAPPTSICAL 133
           R+D+AL +F+++Y+ N+G+ K++YP++ L+     S CAL
Sbjct: 244 RNDEALKIFRTIYSVNSGESKENYPIR-LLENETASGCAL 282

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030801|ref|XP_003699030.1| PREDICTED: synaptic vesicle glycoprotein 2B-like [Apis florea]

 Score = 92.4 bits (228), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 39  IAYFIIPIKWTYPVFD-FFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
           +A  IIP +W+  ++D  F+  SWR FL   + P L G + +F  PESPKFLM+ GR DD
Sbjct: 196 LALIIIPQEWSIVLWDGAFVYNSWRFFLSACSIPILIGVVCLFMFPESPKFLMSQGRMDD 255

Query: 98  ALDVFQSMYARNTGKPKDSYPVKSLMGAPPTS 129
           AL VFQ +Y+ NTGKP   YP++ L   PP++
Sbjct: 256 ALKVFQRIYSINTGKPPKEYPIQYLRNDPPST 287

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195451649|ref|XP_002073016.1| GK13908 [Drosophila willistoni] gi|194169101|gb|EDW84002.1| GK13908 [Drosophila willistoni]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 61/91 (67%)

Query: 38  VIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
           ++A+ + P  W + +F +  + SW+I+L++   PSL   LL   +PESP+FLM  GR+++
Sbjct: 204 LLAWAVFPRDWDFQIFGYLDIHSWQIYLLICGLPSLISGLLFIIMPESPRFLMAQGRNEE 263

Query: 98  ALDVFQSMYARNTGKPKDSYPVKSLMGAPPT 128
           AL  FQ++Y  NT KPK+SYP+K+L+   P 
Sbjct: 264 ALKAFQTIYHYNTRKPKESYPIKTLIQEVPN 294

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076170|ref|XP_971503.1| PREDICTED: similar to synaptic vesicle protein [Tribolium castaneum] gi|270014563|gb|EFA11011.1| hypothetical protein TcasGA2_TC004597 [Tribolium castaneum]

 Score = 90.5 bits (223), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 66/91 (72%), Gaps = 3/91 (3%)

Query: 33  FVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTH 92
           FV GL  A+ +IP    +  ++ F   SWRIFL++   PSL  A+L+FF+PESPKFL++ 
Sbjct: 212 FVAGL--AWLVIPTGIGF-YYESFTYNSWRIFLLICAIPSLIVAILLFFLPESPKFLLSR 268

Query: 93  GRSDDALDVFQSMYARNTGKPKDSYPVKSLM 123
           GRS++A+++F+ +Y+ NTG+ K+ YPVK L+
Sbjct: 269 GRSEEAIEIFKIIYSTNTGRDKEEYPVKQLI 299

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206948|gb|EFN84792.1| Synaptic vesicle glycoprotein 2B [Harpegnathos saltator]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 62/86 (72%), Gaps = 1/86 (1%)

Query: 38  VIAYFIIPIKWTYPVFD-FFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSD 96
           V+A+ ++P  W+  ++D  F+  SWRIFL +   P++ G L + F PESPKFLMT  R++
Sbjct: 184 VMAWLVVPQPWSIVLWDGAFVYNSWRIFLSLCGVPTMIGVLCLCFFPESPKFLMTQNRNE 243

Query: 97  DALDVFQSMYARNTGKPKDSYPVKSL 122
           +AL+VF+ +Y+ NTG PKDSYP+ +L
Sbjct: 244 EALEVFKRIYSTNTGLPKDSYPIGAL 269

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328792189|ref|XP_394182.4| PREDICTED: synaptic vesicle glycoprotein 2C-like [Apis mellifera]

 Score = 90.1 bits (222), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 60/92 (65%), Gaps = 1/92 (1%)

Query: 39  IAYFIIPIKWTYPVFD-FFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
           +A  IIP +W+  ++D  F+  SWR FL   + P L G + +F  PESPKFLM+  R DD
Sbjct: 195 LALIIIPQEWSIVLWDGAFVYNSWRFFLSACSIPILIGVVCLFMFPESPKFLMSQDRMDD 254

Query: 98  ALDVFQSMYARNTGKPKDSYPVKSLMGAPPTS 129
           AL VFQ +Y+ NTGKP + YP++ L   PP++
Sbjct: 255 ALKVFQRIYSINTGKPPEQYPIQYLQNDPPST 286

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374370|gb|AEE62326.1| unknown [Dendroctonus ponderosae]

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/85 (43%), Positives = 60/85 (70%)

Query: 38  VIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
           V+A +I+P+     + D F++ SW I+L +  F  L  A+   F+PESPKFLMT G+++ 
Sbjct: 189 VLAIYILPLNIRINLGDIFVIHSWNIYLFICAFVPLTSAIAFLFLPESPKFLMTTGKNEK 248

Query: 98  ALDVFQSMYARNTGKPKDSYPVKSL 122
           AL VF+ +Y+ NTG+P++++P+KSL
Sbjct: 249 ALKVFKKIYSMNTGQPEETFPIKSL 273

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156549453|ref|XP_001603639.1| PREDICTED: synaptic vesicle glycoprotein 2B-like [Nasonia vitripennis]

 Score = 87.8 bits (216), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 1/85 (1%)

Query: 39  IAYFIIPIKWTYPVFDFFL-MCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
           +A+ IIP KW + + D ++ + SWR+FL + T P LA ++ ++F PESP+FLM   R DD
Sbjct: 176 LAWVIIPHKWQWDLMDGWIEITSWRLFLALCTIPGLAASVALYFFPESPRFLMAKKRHDD 235

Query: 98  ALDVFQSMYARNTGKPKDSYPVKSL 122
           AL VFQ +Y+ NTGK   +YPVK L
Sbjct: 236 ALRVFQRIYSINTGKDPSTYPVKFL 260

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198471039|ref|XP_002133644.1| GA23013 [Drosophila pseudoobscura pseudoobscura] gi|198145738|gb|EDY72271.1| GA23013 [Drosophila pseudoobscura pseudoobscura]

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/92 (44%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 39  IAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDA 98
           +A  I+P  W   ++ F  M +W++F+ V+  PSL  ++L    PESPKFLM+ GR+ +A
Sbjct: 200 LAMIILPQNWNINIWSF-KMTAWQMFVGVTALPSLLSSMLFPLFPESPKFLMSRGRNQEA 258

Query: 99  LDVFQSMYARNTGKPKDSYPVKSLMGAPPTSI 130
           L+ FQ MYA NT KPKDS+P K L    P  +
Sbjct: 259 LEAFQFMYALNTRKPKDSFPFKVLANEVPEQV 290

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195055494|ref|XP_001994652.1| GH17356 [Drosophila grimshawi] gi|193892415|gb|EDV91281.1| GH17356 [Drosophila grimshawi]

 Score = 87.8 bits (216), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 57/91 (62%)

Query: 38  VIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
           ++A+   P +W +  F    + +W IFL +    SL   L++  +PESP+FLM HGR+ +
Sbjct: 160 LMAWATFPRQWDFVFFGSLNIHNWHIFLFICCLASLTSGLIMCLMPESPRFLMAHGRNVE 219

Query: 98  ALDVFQSMYARNTGKPKDSYPVKSLMGAPPT 128
           AL V Q +Y  NTGKPKDSYP+KSL+   P 
Sbjct: 220 ALHVLQRIYHINTGKPKDSYPIKSLILEAPN 250

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
FB|FBgn0051272	563	CG31272 [Drosophila melanogast	0.651	0.202	0.386	1.2e-16
FB|FBgn0040350	558	CG3690 [Drosophila melanogaste	0.714	0.224	0.359	4.3e-16
FB|FBgn0037829	522	CG14691 [Drosophila melanogast	0.508	0.170	0.388	3.5e-14
FB|FBgn0029896	632	CG3168 [Drosophila melanogaste	0.462	0.128	0.441	7.2e-13
ZFIN|ZDB-GENE-000607-80	541	id:ibd5037 "id:ibd5037" [Danio	0.502	0.162	0.393	2.1e-12
FB|FBgn0030331	545	CG15221 [Drosophila melanogast	0.474	0.152	0.321	1.5e-08
FB|FBgn0051103	506	CG31103 [Drosophila melanogast	0.537	0.185	0.294	2e-07
UNIPROTKB|F1NCT9	752	SV2C "Uncharacterized protein"	0.48	0.111	0.295	2.7e-07
UNIPROTKB|B3KT41	676	SV2C "cDNA FLJ37598 fis, clone	0.48	0.124	0.295	3e-07
UNIPROTKB|Q496J9	727	SV2C "Synaptic vesicle glycopr	0.48	0.115	0.295	3.3e-07

FB|FBgn0051272 CG31272 [Drosophila melanogaster (taxid:7227)]

 Score = 199 (75.1 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
 Identities = 46/119 (38%), Positives = 67/119 (56%)

Query:    38 VIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
             ++A+ I P  W +  +   +  SW+IFL V   PSL   L+   +PESP+FLM  GR+++
Sbjct:   202 LLAWGIFPRDWDFEFWGLQVH-SWQIFLFVLGIPSLISGLIFCSMPESPRFLMAQGRNEE 260

Query:    98 ALDVFQSMYARNTGKPKDSYPVKSLMGAPPTSICALLMLFGLKELTVEERVITRPTSIQ 156
             AL  F+ +Y  NT KPKDSYP+K+L+   P    A   +      T+EE+    PT  Q
Sbjct:   261 ALQAFKQIYHVNTRKPKDSYPIKALIQEVPNRKAAQNEVI----YTIEEKSGEVPTKRQ 315

GO:0030672 "synaptic vesicle membrane" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0005215 "transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016298 "lipase activity" evidence=ISS

GO:0006629 "lipid metabolic process" evidence=ISS

FB|FBgn0040350 CG3690 [Drosophila melanogaster (taxid:7227)]

 Score = 209 (78.6 bits), Expect = 4.3e-16, P = 4.3e-16
 Identities = 50/139 (35%), Positives = 75/139 (53%)

Query:    39 IAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDA 98
             +A  I+P  W   ++   L  SW+ F+ V+  PSL   +L FF PESPKFLM+ GR+ +A
Sbjct:   190 LAMLILPETWNIQIWTLSLT-SWQFFVAVTALPSLLSFVLFFFFPESPKFLMSKGRNREA 248

Query:    99 LDVFQSMYARNTGKPKDSYPVKSLMGAPPTSICALLMLFGLKELTVEERVITR---PTSI 155
             LD F+ MY  N+ KPKDS+P+K L            ++  +K+   +E + T    PT  
Sbjct:   249 LDAFKFMYHLNSRKPKDSFPIKLLANE---------VIVPVKKHAKDETIPTELKLPTEC 299

Query:   156 QEIEE-EGDDMTHSMVSGG 173
              E+++ E  D   S +  G
Sbjct:   300 VEVQDPENQDSKKSSLRSG 318

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0037829 CG14691 [Drosophila melanogaster (taxid:7227)]

 Score = 176 (67.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
 Identities = 35/90 (38%), Positives = 52/90 (57%)

Query:    38 VIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
             +++Y ++P+   + V       +W++FL VS+ PSL    L  F+PESPKFLM+ G    
Sbjct:   172 LLSYLLLPVPILFTVSSMKFR-TWQVFLAVSSAPSLLSGFLHIFLPESPKFLMSQGNYKK 230

Query:    98 ALDVFQSMYARNTGKPKDSYPVKSLMGAPP 127
             ALD  Q +Y  N  K ++SYP+K L    P
Sbjct:   231 ALDSLQRIYKLNKRKSRESYPIKHLTDPTP 260

GO:0008021 "synaptic vesicle" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0029896 CG3168 [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 7.2e-13, P = 7.2e-13
 Identities = 38/86 (44%), Positives = 54/86 (62%)

Query:    39 IAYFIIP--IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSD 96
             +A+ IIP  I +T P F +    SWRIFL+V + PS     L+F++PESPKFL+T G+ D
Sbjct:   295 LAWLIIPRTIGFTTPYFTYN---SWRIFLLVCSLPSFLVGFLLFYLPESPKFLLTRGKKD 351

Query:    97 DALDVFQSMYARNTGKPKDSYPVKSL 122
              AL +F+ ++  NT +  D Y V  L
Sbjct:   352 RALAIFRGIFVTNTKRRPDEYMVYDL 377

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-000607-80 id:ibd5037 "id:ibd5037" [Danio rerio (taxid:7955)]

 Score = 159 (61.0 bits), Expect = 2.1e-12, Sum P(2) = 2.1e-12
 Identities = 35/89 (39%), Positives = 51/89 (57%)

Query:    39 IAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLV-FFIPESPKFLMTHGRSDD 97
             +A+ +IP       + +    SWR+F+++ + PSL+ AL+   F+PESPKFLM  GR  +
Sbjct:   210 VAWLVIPRTSLNADWGWLDFQSWRLFVVLCSIPSLSSALIFRLFMPESPKFLMEAGREME 269

Query:    98 ALDVFQSMYARNTGKPKDSYPVKSLMGAP 126
             AL VFQ +Y  N       +PV  LM  P
Sbjct:   270 ALTVFQKIYKLNNRGATKPFPVSGLMIRP 298

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

FB|FBgn0030331 CG15221 [Drosophila melanogaster (taxid:7227)]

 Score = 139 (54.0 bits), Expect = 1.5e-08, P = 1.5e-08
 Identities = 27/84 (32%), Positives = 49/84 (58%)

Query:    39 IAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDA 98
             +A  I+P++    V       SWR+ L+ +    L   + +  +PE+PK+L+  GR D++
Sbjct:   192 MAIGILPLRIETIVLGMHFS-SWRVLLLANVSIPLLALVGISALPETPKYLLVQGRGDES 250

Query:    99 LDVFQSMYARNTGKPKDSYPVKSL 122
             L+V +S++A N+G+    YPVK +
Sbjct:   251 LEVLRSIFANNSGRDPSEYPVKEV 274

GO:0008513 "secondary active organic cation transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0035208 "positive regulation of hemocyte proliferation" evidence=IGI

FB|FBgn0051103 CG31103 [Drosophila melanogaster (taxid:7227)]

 Score = 128 (50.1 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 28/95 (29%), Positives = 47/95 (49%)

Query:    18 RRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL 77
             R V  N S  F     +     A+ ++   W   + DF     WR+ L+VS  P   G L
Sbjct:   154 RAVAINYSTMFVSVTAIYVPATAWLVLSSNWAITMGDFVFR-PWRLLLLVSLLPGFIGGL 212

Query:    78 LVFFIPESPKFLMTHGRSDDALDVFQSMYARNTGK 112
             ++ + PESPKFL++  ++++A++    +   N GK
Sbjct:   213 ILLYYPESPKFLLSQEKNNEAIEAVAWISKFNRGK 247

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NCT9 SV2C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 129 (50.5 bits), Expect = 2.7e-07, P = 2.7e-07
 Identities = 26/88 (29%), Positives = 51/88 (57%)

Query:    39 IAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
             +A+ IIP   W++ +   +   SWR+F+IV   P ++  + + F+PESP+FL+  G+ D+
Sbjct:   321 MAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEIGKHDE 380

Query:    98 ALDVFQSMYARNT---GKPKDSYPVKSL 122
             A  + + ++  N    G+P+  + V  +
Sbjct:   381 AWMILKQIHDTNMRARGQPEKVFTVNRI 408

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008021 "synaptic vesicle" evidence=IEA

UNIPROTKB|B3KT41 SV2C "cDNA FLJ37598 fis, clone BRCOC2008642, highly similar to Synaptic vesicle glycoprotein 2C" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 3.0e-07, P = 3.0e-07
 Identities = 26/88 (29%), Positives = 51/88 (57%)

Query:    39 IAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
             +A+ IIP   W++ +   +   SWR+F+IV   P ++  + + F+PESP+FL+  G+ D+
Sbjct:   296 MAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDE 355

Query:    98 ALDVFQSMYARNT---GKPKDSYPVKSL 122
             A  + + ++  N    G+P+  + V  +
Sbjct:   356 AWMILKLIHDTNMRARGQPEKVFTVNKI 383

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q496J9 SV2C "Synaptic vesicle glycoprotein 2C" [Homo sapiens (taxid:9606)]

 Score = 128 (50.1 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 26/88 (29%), Positives = 51/88 (57%)

Query:    39 IAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
             +A+ IIP   W++ +   +   SWR+F+IV   P ++  + + F+PESP+FL+  G+ D+
Sbjct:   296 MAWAIIPHYGWSFSMGSAYQFHSWRVFVIVCALPCVSSVVALTFMPESPRFLLEVGKHDE 355

Query:    98 ALDVFQSMYARNT---GKPKDSYPVKSL 122
             A  + + ++  N    G+P+  + V  +
Sbjct:   356 AWMILKLIHDTNMRARGQPEKVFTVNKI 383

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	175
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	4e-09
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-08
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-05
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	0.001
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	0.001

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 54.6 bits (131), Expect = 4e-09
 Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 4/85 (4%)

Query: 39  IAYFIIP-IKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDD 97
           +A+ IIP   W++ +   +   SWR+F+IV  FP +     + F+PESP+F + +G+ D+
Sbjct: 310 MAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDE 369

Query: 98  ALDVFQSMYARNT---GKPKDSYPV 119
           A  + + ++  N    G P+  + V
Sbjct: 370 AWMILKLIHDTNMRAKGHPEKVFSV 394

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)

Query: 51  PVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDALDVFQSMYARNT 110
           P+  +F+   WR   +  + P+    LL +F+PESP++L++ GR ++AL + Q + A+  
Sbjct: 233 PLVAYFIP-DWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRI-AKIN 290

Query: 111 GKP 113
           GK 
Sbjct: 291 GKK 293

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 14/43 (32%), Positives = 26/43 (60%)

Query: 61  WRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDALDVFQ 103
           WRI L +   P++   + + F+PESP++L+  G+ ++A  V  
Sbjct: 169 WRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLA 211

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 13/41 (31%), Positives = 25/41 (60%)

Query: 61  WRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDALDV 101
           WR        P+L   +L++F+PE+P++LM+ G+ + A  +
Sbjct: 193 WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGI 233

Length = 479

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 61  WRIFLIVSTFPSLAGALLVFFIPESPKFLMTHGRSDDA 98
           WRI L +   P+    L +FF+PESP++L+  GR ++A
Sbjct: 195 WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEA 232

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
KOG0569|consensus	485		99.79
KOG0254|consensus	513		99.67
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.59
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.33
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.33
KOG0253|consensus	528		99.13
KOG0255|consensus	521		99.07
TIGR00898	505	2A0119 cation transport protein.	99.05
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.96
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.66
PRK10642	490	proline/glycine betaine transporter; Provisional	98.6
PRK09952	438	shikimate transporter; Provisional	98.55
PRK10642	490	proline/glycine betaine transporter; Provisional	98.53
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.28
KOG2533|consensus	495		98.15
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.11
TIGR00891	405	2A0112 putative sialic acid transporter.	97.95
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.79
PRK15075	434	citrate-proton symporter; Provisional	97.67
TIGR00895	398	2A0115 benzoate transport.	97.63
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.63
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.58
KOG0252|consensus	538		97.55
TIGR00901	356	2A0125 AmpG-related permease.	97.48
PRK03893	496	putative sialic acid transporter; Provisional	97.46
PRK11902	402	ampG muropeptide transporter; Reviewed	97.43
PRK11010	491	ampG muropeptide transporter; Validated	97.38
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.34
PRK12307	426	putative sialic acid transporter; Provisional	97.33
TIGR00893	399	2A0114 d-galactonate transporter.	97.16
PRK11663	434	regulatory protein UhpC; Provisional	96.94
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	96.79
PRK03545	390	putative arabinose transporter; Provisional	96.76
PRK15403	413	multidrug efflux system protein MdtM; Provisional	96.65
PTZ00207	591	hypothetical protein; Provisional	96.51
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.51
PRK14995	495	methyl viologen resistance protein SmvA; Provision	96.5
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	96.42
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.39
PRK10091	382	MFS transport protein AraJ; Provisional	96.32
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.25
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	96.22
PRK10213	394	nepI ribonucleoside transporter; Reviewed	96.21
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	96.2
KOG2532|consensus	466		96.19
TIGR00900	365	2A0121 H+ Antiporter protein.	96.19
PRK12382	392	putative transporter; Provisional	96.15
PRK10489	417	enterobactin exporter EntS; Provisional	95.98
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	95.93
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.88
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	95.88
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	95.8
PRK05122	399	major facilitator superfamily transporter; Provisi	95.78
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	95.71
TIGR00805	633	oat sodium-independent organic anion transporter.	95.69
PRK11043	401	putative transporter; Provisional	95.6
PRK10473	392	multidrug efflux system protein MdtL; Provisional	95.57
PRK11195	393	lysophospholipid transporter LplT; Provisional	95.41
PRK11652	394	emrD multidrug resistance protein D; Provisional	95.35
PRK09874	408	drug efflux system protein MdtG; Provisional	95.22
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	95.19
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	95.02
PRK11646	400	multidrug resistance protein MdtH; Provisional	94.97
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	94.65
PRK15011	393	sugar efflux transporter B; Provisional	94.43
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	94.33
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	94.0
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	93.92
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	93.88
PRK10077	479	xylE D-xylose transporter XylE; Provisional	93.85
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	93.67
TIGR00892	455	2A0113 monocarboxylate transporter 1.	93.66
PLN00028	476	nitrate transmembrane transporter; Provisional	93.65
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	93.57
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	93.52
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	93.43
PRK03699	394	putative transporter; Provisional	93.33
PRK15011	393	sugar efflux transporter B; Provisional	93.14
KOG1330|consensus	493		92.98
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	92.97
PRK10504	471	putative transporter; Provisional	92.95
PRK05122	399	major facilitator superfamily transporter; Provisi	91.92
PRK10054	395	putative transporter; Provisional	91.78
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	91.68
PF13347	428	MFS_2: MFS/sugar transport protein	91.45
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	91.34
TIGR00892	455	2A0113 monocarboxylate transporter 1.	91.16
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	90.81
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	90.64
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	90.51
PRK10207	489	dipeptide/tripeptide permease B; Provisional	90.29
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	89.95
PRK09874	408	drug efflux system protein MdtG; Provisional	89.69
PRK09584	500	tppB putative tripeptide transporter permease; Rev	89.29
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	89.08
KOG2615|consensus	451		88.91
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	88.68
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	88.38
TIGR00898	505	2A0119 cation transport protein.	88.34
TIGR00896	355	CynX cyanate transporter. This family of proteins	87.57
KOG3626|consensus	735		87.49
TIGR00897	402	2A0118 polyol permease family. This family of prot	87.34
PRK12382	392	putative transporter; Provisional	86.95
PRK09705	393	cynX putative cyanate transporter; Provisional	86.57
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	86.47
TIGR00893	399	2A0114 d-galactonate transporter.	86.14
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	85.77
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	85.69
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	85.59
TIGR00788	468	fbt folate/biopterin transporter. The only functio	85.5
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	85.46
PRK09528	420	lacY galactoside permease; Reviewed	85.18
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	85.18
TIGR00897	402	2A0118 polyol permease family. This family of prot	84.36
PRK03633	381	putative MFS family transporter protein; Provision	84.01
PRK11462	460	putative transporter; Provisional	82.7
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	81.84
PRK10489	417	enterobactin exporter EntS; Provisional	81.47
PRK09669	444	putative symporter YagG; Provisional	80.68

>KOG0569|consensus

Probab=99.79  E-value=1.4e-19  Score=151.21  Aligned_cols=144  Identities=17%  Similarity=0.223  Sum_probs=111.7

Q ss_pred             cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745          2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF   81 (175)
Q Consensus         2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~   81 (175)
                      .|++ |++.||..+++.+++..+|.       +++..++.--        +.|  ++..|++.+.+..+|+++..+...+
T Consensus       142 ~E~s-P~~~RG~~g~~~~~~~~~g~-------ll~~~~~l~~--------ilG--t~~~W~~l~~~~~i~~~~~l~~l~~  203 (485)
T KOG0569|consen  142 TEIS-PKNLRGALGTLLQIGVVIGI-------LLGQVLGLPS--------LLG--TEDLWPYLLAFPLIPALLQLALLPF  203 (485)
T ss_pred             hhcC-hhhhccHHHHHHHHHHHHHH-------HHHHHHccHH--------hcC--CCcchHHHHHHHHHHHHHHHHHHhc
Confidence            4555 99999999999999999999       9887776654        233  5678999999999999999999999


Q ss_pred             cCCChHHHHh-cCChHHHHHHHHHHhhccCCCCCC----------------cccccccccCCchhHH--HHHHHHhccee
Q psy12745         82 IPESPKFLMT-HGRSDDALDVFQSMYARNTGKPKD----------------SYPVKSLMGAPPTSIC--ALLMLFGLKEL  142 (175)
Q Consensus        82 lpESP~~L~~-~g~~~~a~~~l~~l~~~~~~~~~~----------------~~~~~~l~~~~~~~~~--~~~~~~~~~~~  142 (175)
                      +|||||||+. |||.|+|++.++++++.++++.+.                ..++.++++.+..++.  ..+++...||+
T Consensus       204 ~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~  283 (485)
T KOG0569|consen  204 LPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQF  283 (485)
T ss_pred             CCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHh
Confidence            9999999987 899999999999998876432211                1123344444333322  33445556999


Q ss_pred             ecceeEeechhhHHhhhc-cCC
Q psy12745        143 TVEERVITRPTSIQEIEE-EGD  163 (175)
Q Consensus       143 ~~~~~i~~~~~~i~~~~~-~~~  163 (175)
                      +|.+.+.+|.+.+++++| +.+
T Consensus       284 sGi~ai~~Yst~i~~~aG~~~~  305 (485)
T KOG0569|consen  284 SGINAIFFYSTSIFKTAGFTPE  305 (485)
T ss_pred             cCcceeHHHHHHHHHHcCCCHH
Confidence            999999999999999998 444

>KOG0254|consensus

Probab=99.67  E-value=3e-16  Score=133.23  Aligned_cols=151  Identities=20%  Similarity=0.277  Sum_probs=110.7

Q ss_pred             cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745          2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF   81 (175)
Q Consensus         2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~   81 (175)
                      +|++ |++.||.+.+..++.+++|.       +++.++++.....           .++||+++.+..+|+++..+..++
T Consensus       168 sEia-p~~~RG~l~~~~~l~~~~Gi-------~~~~~~~~~~~~~-----------~~~Wr~~~~~~~i~~~~~~~~~~~  228 (513)
T KOG0254|consen  168 SEIA-PAHIRGTLVSLYQLFITIGI-------LLGYCINYGTSKV-----------YAGWRIPLGLALIPAVILALGMLF  228 (513)
T ss_pred             hhcC-ChhhhHHHHHHHHHHHHHHH-------HHHHHHhhhhccC-----------CccHHHHHHHHHHHHHHHHHHHHh
Confidence            4555 88899999999999999999       9998888876211           158999999999999998877888


Q ss_pred             cCCChHHHHhcCChHHHHHHHHHHhhccCCCCCCcc---c---------------ccccccCC-chhHHHHHHHHhccee
Q psy12745         82 IPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSY---P---------------VKSLMGAP-PTSICALLMLFGLKEL  142 (175)
Q Consensus        82 lpESP~~L~~~g~~~~a~~~l~~l~~~~~~~~~~~~---~---------------~~~l~~~~-~~~~~~~~~~~~~~~~  142 (175)
                      +||||+||.++|+.++|++.++++++.++.+...+.   .               ..+++++. ++.....+.+..+||+
T Consensus       229 ~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~l~~fqq~  308 (513)
T KOG0254|consen  229 LPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFSPKVRKRLIIGLLLQLFQQL  308 (513)
T ss_pred             CCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcCcchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999884322211111   0               11222211 1222233455556999


Q ss_pred             ecceeEeechhhHHhhhc-cCCchhhhhhc
Q psy12745        143 TVEERVITRPTSIQEIEE-EGDDMTHSMVS  171 (175)
Q Consensus       143 ~~~~~i~~~~~~i~~~~~-~~~~~~~~~v~  171 (175)
                      +|.+.+.+|.+.+|+..+ +.+....+++.
T Consensus       309 tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~  338 (513)
T KOG0254|consen  309 TGINYVFYYSTTIFKSAGLKSDTFLASIIL  338 (513)
T ss_pred             hCCceEEeehHHHHHhcCCCCchHHHHHHH
Confidence            999999999999999998 44434444443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.59  E-value=2e-17  Score=137.45  Aligned_cols=142  Identities=22%  Similarity=0.357  Sum_probs=102.7

Q ss_pred             cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745          2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF   81 (175)
Q Consensus         2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~   81 (175)
                      .|++ |+++||+..++.++.+.+|.       +++.++++......         ++++||+.+.++.+|+++.++...+
T Consensus       128 ~E~~-~~~~R~~~~~~~~~~~~~G~-------~~~~~~~~~~~~~~---------~~~~Wr~~~~~~~~~~l~~~~~~~~  190 (451)
T PF00083_consen  128 SEIA-PPKHRGFLSSLFQLFWALGI-------LLASLIGYIVSYYS---------DNWGWRILLIFGAIPSLLVLLLRFF  190 (451)
T ss_pred             cccc-cccccccccccccccccccc-------cccccccccccccc---------ccccccccccccccccccccccccc
Confidence            3444 78899999999999999999       88888887763321         2368999999999999888888889


Q ss_pred             cCCChHHHHhcCChHHHHHHHHHHhhccCCCCCCcc-------------cccccccCCc--hhHHHHHHHHhcceeecce
Q psy12745         82 IPESPKFLMTHGRSDDALDVFQSMYARNTGKPKDSY-------------PVKSLMGAPP--TSICALLMLFGLKELTVEE  146 (175)
Q Consensus        82 lpESP~~L~~~g~~~~a~~~l~~l~~~~~~~~~~~~-------------~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~  146 (175)
                      +|||||||.+|||.|||++.++++++.+..+.+...             ..+++++.+.  ........+...+++++.+
T Consensus       191 ~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~  270 (451)
T PF00083_consen  191 LPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGIN  270 (451)
T ss_pred             cccccceecccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccccccccc
Confidence            999999999999999999999997655322211111             1222333322  1122222333347788888


Q ss_pred             eEeechhhHHhhhc
Q psy12745        147 RVITRPTSIQEIEE  160 (175)
Q Consensus       147 ~i~~~~~~i~~~~~  160 (175)
                      .+.+|.+.+++..+
T Consensus       271 ~~~~~~~~i~~~~~  284 (451)
T PF00083_consen  271 FIFYYSPSIFENAG  284 (451)
T ss_pred             cccccccccccccc
Confidence            89999999998887

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.33  E-value=4.6e-12  Score=107.26  Aligned_cols=95  Identities=15%  Similarity=0.177  Sum_probs=72.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccC-Ccccc----------cccccchHHHHHHhhHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWT-YPVFD----------FFLMCSWRIFLIVSTFPSLAG   75 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~-~~~~~----------~~~~~~Wr~~~~~~~i~~~~~   75 (175)
                      |++.||+..++.+..+.+|.       +++..++..+...... .+..+          ...+++||+++.++++|+++.
T Consensus       145 p~~~Rg~~~~~~~~~~~~g~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~  217 (502)
T TIGR00887       145 TKKWRGAMMAAVFAMQGFGI-------LAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA  217 (502)
T ss_pred             ChhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH
Confidence            88899999999999999999       8888887765432110 00000          012368999999999999988


Q ss_pred             HHHHhhcCCChHHHHhcCChH-HHHHHHHHHhhc
Q psy12745         76 ALLVFFIPESPKFLMTHGRSD-DALDVFQSMYAR  108 (175)
Q Consensus        76 ~~~~~~lpESP~~L~~~g~~~-~a~~~l~~l~~~  108 (175)
                      ++.++++|||||||..|||.| ++++.+++..+.
T Consensus       218 ~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~  251 (502)
T TIGR00887       218 LYFRLTIPETPRYTADVAKDVEQAASDMSAVLQV  251 (502)
T ss_pred             HHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhcc
Confidence            888889999999999988875 477777776543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.33  E-value=4.6e-12  Score=111.71  Aligned_cols=97  Identities=26%  Similarity=0.593  Sum_probs=79.2

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccc-cCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIK-WTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpES   85 (175)
                      |++.||...++...++.+|.       +++.++++.+.+.. +...........+||++++++++|+++.++..+++|||
T Consensus       285 p~~~Rg~~~g~~~~~~~iG~-------ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPES  357 (742)
T TIGR01299       285 AQEKRGEHLSWLCMFWMIGG-------IYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPES  357 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            78899999999999999999       99998888776532 11111111123589999999999988888888899999


Q ss_pred             hHHHHhcCChHHHHHHHHHHhhccC
Q psy12745         86 PKFLMTHGRSDDALDVFQSMYARNT  110 (175)
Q Consensus        86 P~~L~~~g~~~~a~~~l~~l~~~~~  110 (175)
                      |+||..+||.++|.++++++++.|.
T Consensus       358 PrwL~~~gr~~eA~~iL~~i~~~n~  382 (742)
T TIGR01299       358 PRFFLENGKHDEAWMILKLIHDTNM  382 (742)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcCCC
Confidence            9999999999999999999987764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253|consensus

Probab=99.13  E-value=2.5e-10  Score=92.51  Aligned_cols=86  Identities=20%  Similarity=0.373  Sum_probs=76.6

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |...|+..+-+. ..|.+|.       ++...++++.++.            .|||+.+++..+|..+.....+++||||
T Consensus       195 p~~~r~~~~V~~-~~waig~-------v~ea~law~vm~~------------~gwr~~l~~~~~pl~~~a~f~~w~~ESp  254 (528)
T KOG0253|consen  195 PSSHRWLLTVMS-FFWAIGQ-------VFEALLAWGVMSN------------FGWRYLLFTSSTPLMFAARFLVWVYESP  254 (528)
T ss_pred             cCcCCCcchhHH-HHHHHHH-------HHHHHHHHHHHHh------------hhHHHHHHHHHhHHHHHHHHHhhcccCc
Confidence            676787777776 9999999       9999999999654            5999999988899888888899999999


Q ss_pred             HHHHhcCChHHHHHHHHHHhhccCCC
Q psy12745         87 KFLMTHGRSDDALDVFQSMYARNTGK  112 (175)
Q Consensus        87 ~~L~~~g~~~~a~~~l~~l~~~~~~~  112 (175)
                      ||++.+|+++||.+.++++++.|+.+
T Consensus       255 Rf~~~~G~~~kAletL~kiArmNg~q  280 (528)
T KOG0253|consen  255 RFYLAKGDDYKALETLHKIARMNGKQ  280 (528)
T ss_pred             chhhhcCChHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999988764

>KOG0255|consensus

Probab=99.07  E-value=6.3e-10  Score=94.57  Aligned_cols=85  Identities=24%  Similarity=0.395  Sum_probs=72.4

Q ss_pred             cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745          2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF   81 (175)
Q Consensus         2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~   81 (175)
                      +|+- +++.|+..+++....+..|.       +...+.++..               .+||+.+++..+|+++.++..++
T Consensus       197 ~E~~-~~~~R~~~~~~~~~~~~~~~-------~~~~~~a~~~---------------~~Wr~~~~~~~~~~~~~~~~~~l  253 (521)
T KOG0255|consen  197 AEIV-SPKQRGLALTLGGFFFVGGL-------MLPAGAAYIT---------------RDWRWLFWIISIPSGLFLLLWFL  253 (521)
T ss_pred             eeec-CcchhhHHHHHHHHHHHHHH-------HHHHHHHHHH---------------hhHHHHHHHHHHHHHHHHHHHHc
Confidence            4555 55699999999777888888       8777888887               58999999999999988777666


Q ss_pred             cCCChHHHHhcCChHHHHHHHHHHhhcc
Q psy12745         82 IPESPKFLMTHGRSDDALDVFQSMYARN  109 (175)
Q Consensus        82 lpESP~~L~~~g~~~~a~~~l~~l~~~~  109 (175)
                      .||||||+..+||.++|.+.+++..+.|
T Consensus       254 ~~Es~rwl~~~g~~~~a~~~l~~~a~~n  281 (521)
T KOG0255|consen  254 PPESPRWLLSKGRIDEAIKILKKIAKLN  281 (521)
T ss_pred             cCcChHHHHHcCchHHHHHHHHHHHhhc
Confidence            7799999999999999999999998765

>TIGR00898 2A0119 cation transport protein

Probab=99.05  E-value=7.9e-10  Score=93.30  Aligned_cols=83  Identities=29%  Similarity=0.515  Sum_probs=73.1

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++|+...++.+.++.+|.       +++.++++.+               .+||+.+++.+++.++..+..+++||||
T Consensus       210 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~~---------------~~wr~~~~~~~i~~~~~~~~~~~~~esp  267 (505)
T TIGR00898       210 PKKQRAIVGTLIQVFFSLGL-------VLLPLVAYFI---------------PDWRWLQLAVSLPTFLFFLLSWFVPESP  267 (505)
T ss_pred             ChhhhHHHHHHHHHHHHHHH-------HHHHHHHHHh---------------hHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            78899999999999999999       9999998876               3599999999998888777778899999


Q ss_pred             HHHHhcCChHHHHHHHHHHhhccCC
Q psy12745         87 KFLMTHGRSDDALDVFQSMYARNTG  111 (175)
Q Consensus        87 ~~L~~~g~~~~a~~~l~~l~~~~~~  111 (175)
                      +|+..+++.+++.+.+++..+.|+.
T Consensus       268 ~~l~~~~~~~~a~~~l~~~~~~~~~  292 (505)
T TIGR00898       268 RWLISQGRIEEALKILQRIAKINGK  292 (505)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            9999999999999999988776543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.96  E-value=3e-09  Score=89.01  Aligned_cols=90  Identities=19%  Similarity=0.444  Sum_probs=70.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++||+..+..+.++.+|.       +++.+++..+.+.....    ....++||++|++.++++++..+..+++||||
T Consensus       150 ~~~~rg~~~~~~~~~~~~G~-------~~~~~~~~~~~~~~~~~----~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~  218 (479)
T PRK10077        150 PAHIRGKLVSFNQFAIIFGQ-------LVVYFVNYFIARSGDAS----WLNTDGWRYMFASEAIPALLFLMLLYFVPETP  218 (479)
T ss_pred             ChhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHhccCccc----ccccCChHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            77899999999999999999       88888777664321100    01347999999999888888777778899999


Q ss_pred             HHHHhcCChHHHHHHHHHHhh
Q psy12745         87 KFLMTHGRSDDALDVFQSMYA  107 (175)
Q Consensus        87 ~~L~~~g~~~~a~~~l~~l~~  107 (175)
                      +|+..+++.|++++.+++..+
T Consensus       219 ~~l~~~~~~~~~~~~~~~~~~  239 (479)
T PRK10077        219 RYLMSRGKQEQAEGILRKIMG  239 (479)
T ss_pred             HHHHHcCCHHHHHHHHHHHcC
Confidence            999888998888777766543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.66  E-value=1.2e-07  Score=78.10  Aligned_cols=81  Identities=21%  Similarity=0.276  Sum_probs=64.6

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHH---HHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIA---YFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIP   83 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lp   83 (175)
                      |+++|++..++.+.++++|.       +++.+++   ...            ....+||+.|.+..++.++.++..+++|
T Consensus       157 ~~~~r~~~~~~~~~~~~~G~-------~~~~~~~~~~~~~------------~~~~~w~~~f~~~~~~~~~~~~~~~~l~  217 (481)
T TIGR00879       157 PKALRGALTSLYQLAITFGI-------LVAYGFGSGKVSL------------NNTLGWRIPLGLQLIPAGLLFLGLFFLP  217 (481)
T ss_pred             ChhhhhhhhhHHHHHHHHHH-------HHHHHHHHHhhcC------------CCCccHHHHHHHHHHHHHHHHHHHhcCC
Confidence            77899999999999999999       8888887   222            1236999999998777777777778899


Q ss_pred             CChHHHHhcCChHHHHHHHHHHh
Q psy12745         84 ESPKFLMTHGRSDDALDVFQSMY  106 (175)
Q Consensus        84 ESP~~L~~~g~~~~a~~~l~~l~  106 (175)
                      |+|+++..+++.+++.+.+++..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~  240 (481)
T TIGR00879       218 ESPRWLVGKGRVEEARKSLARLR  240 (481)
T ss_pred             CChHHHHHcCChHHHHHHHHHHh
Confidence            99999988888777766665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.60  E-value=9.4e-08  Score=80.85  Aligned_cols=75  Identities=21%  Similarity=0.260  Sum_probs=55.3

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++||+..++.+.+..+|.       +++..+...+.....+..    ...++||++|+++.+++++.++.+.++||||
T Consensus       148 p~~~Rg~~~~~~~~~~~~G~-------~lg~~~~~~~~~~~~~~~----~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp  216 (490)
T PRK10642        148 PDRKRGFMGSWLDFGSIAGF-------VLGAGVVVLISTIVGEAN----FLDWGWRIPFFIALPLGIIGLYLRHALEETP  216 (490)
T ss_pred             CCCCCcHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCHHH----hcCccHHHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            88899999999999988888       888766554422111000    1247999999998877776667777899999


Q ss_pred             HHHHhc
Q psy12745         87 KFLMTH   92 (175)
Q Consensus        87 ~~L~~~   92 (175)
                      +|+..+
T Consensus       217 ~~~~~~  222 (490)
T PRK10642        217 AFQQHV  222 (490)
T ss_pred             hHHHHH
Confidence            997544

>PRK09952 shikimate transporter; Provisional

Probab=98.55  E-value=1e-07  Score=79.59  Aligned_cols=75  Identities=16%  Similarity=0.100  Sum_probs=56.7

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++||+..+..+.++.+|.       +++..+...+.+...+.+.    ..++||++|++++++.++....+..+||||
T Consensus       155 p~~~rg~~~~~~~~g~~~G~-------~l~~~~~~~l~~~~~~~~~----~~~gWr~~f~~~~~~~l~~~~l~~~~~es~  223 (438)
T PRK09952        155 PKNKKAFYSSGVQVGYGVGL-------LLSTGLVSLISMMTTDEQF----LSWGWRIPFLFSIVLVLIALWVRNGMEESA  223 (438)
T ss_pred             CCCCCcHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCHHHh----hccChHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            88899999999999999999       8887766555332211111    237999999999888777667777899999


Q ss_pred             HHHHhc
Q psy12745         87 KFLMTH   92 (175)
Q Consensus        87 ~~L~~~   92 (175)
                      +|..++
T Consensus       224 ~~~~~~  229 (438)
T PRK09952        224 EFEQQQ  229 (438)
T ss_pred             hHHHHH
Confidence            997544

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=98.53  E-value=1.4e-07  Score=79.79  Aligned_cols=82  Identities=6%  Similarity=0.013  Sum_probs=60.8

Q ss_pred             CCCCchhhHHH-hHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCC
Q psy12745          7 TKRDTKKIIYW-RRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpES   85 (175)
                      |++.||...++ .+++...|.       +...++++....            ..+|+.++++..+++++.++..+++|||
T Consensus       372 p~~~Rg~~~g~~~~~~~~~g~-------~~p~i~g~l~~~------------~~~~~~~~~~~~~~~~i~~~~~~~~pes  432 (490)
T PRK10642        372 PTHIRYSALAAAFNISVLVAG-------LTPTLAAWLVES------------TQNLMMPAYYLMVVAVIGLITGVTMKET  432 (490)
T ss_pred             CCccchHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------hCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence            88899987775 566655555       544455555411            1368888887777777777777788999


Q ss_pred             hHHHHhc-----CChHHHHHHHHHHhh
Q psy12745         86 PKFLMTH-----GRSDDALDVFQSMYA  107 (175)
Q Consensus        86 P~~L~~~-----g~~~~a~~~l~~l~~  107 (175)
                      |+|+.++     ||.|||++++++++.
T Consensus       433 ~~~~~~~~~~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        433 ANRPLKGATPAASDIQEAKEILVEHYD  459 (490)
T ss_pred             cCCCCCCccccccchhhHHHHhhcccc
Confidence            9999865     999999999999973

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.28  E-value=1.9e-06  Score=71.72  Aligned_cols=72  Identities=10%  Similarity=0.070  Sum_probs=53.8

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++||+..+..+.+...|.       +++.++...+.....+.+.    ..++||++|+++++++++.++.+..+||||
T Consensus       154 p~~~rg~~~~~~~~~~~~G~-------~~~~~~~~~~~~~~~~~~~----~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~  222 (432)
T PRK10406        154 VEGRKGFYASFQYVTLIGGQ-------LLALLVVVVLQQTLEDAEL----REWGWRIPFALGAVLAVVALWLRRQLDETS  222 (432)
T ss_pred             CCCcccHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCHHHH----hccchHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            78899999999888888888       8777665544322111111    137999999999998888777788899999


Q ss_pred             HHH
Q psy12745         87 KFL   89 (175)
Q Consensus        87 ~~L   89 (175)
                      ++.
T Consensus       223 ~~~  225 (432)
T PRK10406        223 QQE  225 (432)
T ss_pred             hHH
Confidence            874

>KOG2533|consensus

Probab=98.15  E-value=1.6e-06  Score=73.65  Aligned_cols=72  Identities=19%  Similarity=0.360  Sum_probs=57.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      .+++||...++......+|.       ++|+++++++..+.      +.....+||++|++.++.+++.. +..+++|+.
T Consensus       164 ~~~e~g~r~~~~~a~~~~g~-------i~ggliA~g~~~~~------~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~  230 (495)
T KOG2533|consen  164 GKSERGLRMGIWYASASLGN-------IFGGLIAYGVFKLN------GSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDN  230 (495)
T ss_pred             ChhhhhhhHHHHHHhcchhh-------HHHHHHHHHhhhhc------CCCCcCCceeehhHHHHHHHHHHheEEEEecCC
Confidence            57789999999999999999       99999999975422      21245799999999998888764 556779999


Q ss_pred             hH--HHHh
Q psy12745         86 PK--FLMT   91 (175)
Q Consensus        86 P~--~L~~   91 (175)
                      |.  |+.+
T Consensus       231 P~~~~fl~  238 (495)
T KOG2533|consen  231 PSKAWFLT  238 (495)
T ss_pred             hhhccccc
Confidence            97  5433

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.11  E-value=6.6e-06  Score=67.40  Aligned_cols=64  Identities=13%  Similarity=0.059  Sum_probs=52.7

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH-HHHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA-GALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~-~~~~~~~lpES   85 (175)
                      |+++|++..++.+.+..+|.       +++..++..+.+            ..+||..|++.++++++ .++.++++||+
T Consensus       108 ~~~~r~~a~~~~~~~~~lG~-------~l~~~~~~~l~~------------~~gWr~~f~~~~~l~~~~~~~~~~~lp~~  168 (368)
T TIGR00903       108 REERRDLVISLLSFAMYLGI-------IFALAAGLKIYT------------AGGLQLLIIPIAAVAAAGIILVLAALPAL  168 (368)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------ccchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            78899999999999999999       999988888743            36999999987676655 45557779999


Q ss_pred             hHHH
Q psy12745         86 PKFL   89 (175)
Q Consensus        86 P~~L   89 (175)
                      |++.
T Consensus       169 p~~~  172 (368)
T TIGR00903       169 PFQA  172 (368)
T ss_pred             CCCC
Confidence            9873

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.95  E-value=3.7e-05  Score=62.37  Aligned_cols=70  Identities=19%  Similarity=0.252  Sum_probs=55.2

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++|++..++.+.++.+|.       +++..++..+....          ..+||+.+++..++.++.++....+||+|
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~-------~~~~~l~~~l~~~~----------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  192 (405)
T TIGR00891       130 PKHLRNKASGLLISGYAVGA-------VVAAQVYSLVVPVW----------GDGWRALFFISILPIIFALWLRKNIPEAE  192 (405)
T ss_pred             ChhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhc----------CccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            77899999999999999999       88888877664321          13599999998887777777777899999


Q ss_pred             HHHHhcC
Q psy12745         87 KFLMTHG   93 (175)
Q Consensus        87 ~~L~~~g   93 (175)
                      ++..+++
T Consensus       193 ~~~~~~~  199 (405)
T TIGR00891       193 DWKEKHA  199 (405)
T ss_pred             hHHHHhh
Confidence            8865443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.79  E-value=5.1e-05  Score=61.06  Aligned_cols=74  Identities=18%  Similarity=0.160  Sum_probs=53.9

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++|+...+..+.+..+|.       +++..++..+........    ...++||+++++..++.++..+....+||+|
T Consensus       126 ~~~~r~~~~~~~~~~~~~G~-------~i~~~~~~~~~~~~~~~~----~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  194 (394)
T TIGR00883       126 PPGKRGFYGSFQQVGAPVGL-------LLAALTVLLLSYLLGDDA----LLEWGWRIPFLVSAVLVLIGLYLRRNLEETP  194 (394)
T ss_pred             CcccchHHHHHHHHHHHHHH-------HHHHHHHHHHHHhcCHHH----hhccchHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            77899999999999999999       888877665532110000    1247999999988877776666667789998


Q ss_pred             HHHHh
Q psy12745         87 KFLMT   91 (175)
Q Consensus        87 ~~L~~   91 (175)
                      ++..+
T Consensus       195 ~~~~~  199 (394)
T TIGR00883       195 VFEKA  199 (394)
T ss_pred             hHHHH
Confidence            77543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK15075 citrate-proton symporter; Provisional

Probab=97.67  E-value=0.00011  Score=61.12  Aligned_cols=73  Identities=15%  Similarity=0.174  Sum_probs=50.7

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++||+..++......+|.       +++..++..+.....+..    .+.++||++|+++.++..+.++.+...||++
T Consensus       147 p~~~rg~~~~~~~~~~~~g~-------~~g~~~g~~l~~~~~~~~----~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~  215 (434)
T PRK15075        147 TPGRKGFYTSWQSASQQVAV-------VFAALLGYLLNQWLSPAQ----MAEWGWRIPFLIGCLIVPFIFLIRRSLEETE  215 (434)
T ss_pred             CcccchHHHHHHHHHHHHHH-------HHHHHHHHHHHHhCCHHH----HhccchHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            88899999999988888888       777777666532210000    1247999999987666555555566788987


Q ss_pred             HHHH
Q psy12745         87 KFLM   90 (175)
Q Consensus        87 ~~L~   90 (175)
                      ++..
T Consensus       216 ~~~~  219 (434)
T PRK15075        216 EFLA  219 (434)
T ss_pred             HHHH
Confidence            6653

>TIGR00895 2A0115 benzoate transport

Probab=97.63  E-value=0.00016  Score=58.28  Aligned_cols=80  Identities=23%  Similarity=0.341  Sum_probs=58.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHH-HHHHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSL-AGALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~-~~~~~~~~lpES   85 (175)
                      |+++|+...++......+|.       .+++.++..+.            +..+||..+.+.++... ...+...++||+
T Consensus       135 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~l~------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (398)
T TIGR00895       135 PKRFRGTAVGLMFCGYPIGA-------AVGGFLAGWLI------------PVFGWRSLFYVGGIAPLLLLLLLMRFLPES  195 (398)
T ss_pred             CHHhhchhHhhHhhHHHHHH-------HHHHHHHHHHh------------hcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence            77899999999999999999       88888776552            23689999888754444 345556778999


Q ss_pred             hHHHHhcCChHHHHHHHHHHh
Q psy12745         86 PKFLMTHGRSDDALDVFQSMY  106 (175)
Q Consensus        86 P~~L~~~g~~~~a~~~l~~l~  106 (175)
                      |++..++ +.+++.+..++..
T Consensus       196 ~~~~~~~-~~~~~~~~~~~~~  215 (398)
T TIGR00895       196 IDFLVSK-RPETVRRIVNAIA  215 (398)
T ss_pred             ChHHHhc-CHHHHHHHHHHHH
Confidence            9987665 4555555555543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.63  E-value=5.8e-05  Score=62.55  Aligned_cols=68  Identities=15%  Similarity=0.359  Sum_probs=51.6

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES   85 (175)
                      |+++||...++.+..+.+|.       +++..++..+....      +..+..+||+.|.+.++++++. .+..+++||+
T Consensus       126 ~~~~rg~~~~~~~~~~~~g~-------~~~~~~~~~l~~~~------~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~  192 (412)
T TIGR02332       126 PAYFRARANALFMIAMPVTM-------ALGLILSGYILALD------GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDS  192 (412)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhCC------CCCCccchhHHHHHHHHHHHHHHHHHhhccCCC
Confidence            77899999999999999999       99888877663210      0012369999999988887765 4456678999


Q ss_pred             hH
Q psy12745         86 PK   87 (175)
Q Consensus        86 P~   87 (175)
                      |+
T Consensus       193 p~  194 (412)
T TIGR02332       193 PD  194 (412)
T ss_pred             cc
Confidence            94

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.58  E-value=0.00032  Score=57.43  Aligned_cols=67  Identities=19%  Similarity=0.166  Sum_probs=51.4

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES   85 (175)
                      |+++|+...++.+.+..+|.       +++..++..+.            ...+||..+++.++..++. ++...++||+
T Consensus       133 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  193 (406)
T PRK11551        133 GPRLRGTAVSLMYCGVPFGG-------ALASVIGVLAA------------GDAAWRHIFYVGGVGPLLLVPLLMRWLPES  193 (406)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHc------------cccCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            67899999999999999999       88888876552            2368999998877655554 4455678999


Q ss_pred             hHHHHhc
Q psy12745         86 PKFLMTH   92 (175)
Q Consensus        86 P~~L~~~   92 (175)
                      |++..++
T Consensus       194 ~~~~~~~  200 (406)
T PRK11551        194 RAFAQAA  200 (406)
T ss_pred             hhHHhcc
Confidence            9886443

>KOG0252|consensus

Probab=97.55  E-value=5.6e-05  Score=63.31  Aligned_cols=84  Identities=17%  Similarity=0.180  Sum_probs=60.9

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccc----cccccchHHHHHHhhHHHHHHHHHHhhc
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFD----FFLMCSWRIFLIVSTFPSLAGALLVFFI   82 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~----~~~~~~Wr~~~~~~~i~~~~~~~~~~~l   82 (175)
                      .+++||...+.....++.|.       +.|.+++..+.... .....+    .+.+--||+.+.++.+|++..+.-|..|
T Consensus       174 n~~~RGa~iaavFa~Qg~Gi-------laG~ivt~Iv~~~f-e~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M  245 (538)
T KOG0252|consen  174 NKKTRGAFIAAVFAMQGFGI-------LAGGIVALIVSAIF-EKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKM  245 (538)
T ss_pred             hhccccceeEEEEEecchhH-------hhccHHHHHHHHHH-hccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            78899999999999999998       77777766654321 000011    0233569999999999999999999999


Q ss_pred             CCChHHHH-hcCChHHH
Q psy12745         83 PESPKFLM-THGRSDDA   98 (175)
Q Consensus        83 pESP~~L~-~~g~~~~a   98 (175)
                      |||+||-. ..++.++|
T Consensus       246 ~Et~~Y~al~~~~~~~a  262 (538)
T KOG0252|consen  246 PETARYTALVSKKLKQA  262 (538)
T ss_pred             CcchhHHHHhhcCHhhh
Confidence            99999973 33444444

>TIGR00901 2A0125 AmpG-related permease

Probab=97.48  E-value=0.00032  Score=56.50  Aligned_cols=72  Identities=14%  Similarity=0.191  Sum_probs=52.8

Q ss_pred             ccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh-
Q psy12745          3 DISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF-   81 (175)
Q Consensus         3 ~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~-   81 (175)
                      |.. |+++|++..++...++.+|.       ++++.++..+.+.....+    ...++||.+|++.++..++..+..++ 
T Consensus       110 ~~~-~~~~r~~~~~~~~~~~~~G~-------~~~~~l~~~l~~~~g~~~----~~~~~wr~~f~i~ai~~l~~~~~~~~~  177 (356)
T TIGR00901       110 EIL-SDEELGYGSTIYIVGYRAGM-------LLSGSLALVLASPEFANT----GLITLWGYIFFWTALLILPGLLVTLFL  177 (356)
T ss_pred             HhC-CHhhhchHHHHHHHHHHHHH-------HHHHHHHHHHhhhccccc----ccccccHHHHHHHHHHHHHHHHHHHHh
Confidence            444 78899999999999999999       999988877654431111    13467999999998877776555443 


Q ss_pred             cCCCh
Q psy12745         82 IPESP   86 (175)
Q Consensus        82 lpESP   86 (175)
                      .||++
T Consensus       178 ~~e~~  182 (356)
T TIGR00901       178 AKEPQ  182 (356)
T ss_pred             ccCCC
Confidence            57864

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.46  E-value=0.00032  Score=59.02  Aligned_cols=67  Identities=16%  Similarity=0.307  Sum_probs=53.1

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++|++..++....+.+|.       +++..++..+.+            ..+||+.+.+..++.++.++....+||++
T Consensus       138 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~~w~~~f~~~~~~~~~~~~~~~~~p~~~  198 (496)
T PRK03893        138 PKHLRNKASGFLISGFSIGA-------VVAAQVYSLVVP------------VWGWRALFFIGILPIIFALWLRKNLPEAE  198 (496)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhc------------cCCHHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            67789999999999999999       888888776633            36999999987776666666677789999


Q ss_pred             HHHHhc
Q psy12745         87 KFLMTH   92 (175)
Q Consensus        87 ~~L~~~   92 (175)
                      +|...+
T Consensus       199 ~~~~~~  204 (496)
T PRK03893        199 DWKEKH  204 (496)
T ss_pred             hhhhhc
Confidence            885443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.43  E-value=0.00058  Score=56.18  Aligned_cols=64  Identities=14%  Similarity=0.146  Sum_probs=50.4

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++|++..++...++.+|.       +++..++..+...           ..+||.+|++.++..++..+..+++||++
T Consensus       124 ~~~~r~~~~~~~~~g~~~g~-------i~g~~l~~~l~~~-----------~~gw~~~f~i~a~~~l~~~l~~~~~~e~~  185 (402)
T PRK11902        124 HPEERGAGAAVKVLGYRLAM-------LVSGGLALWLADR-----------VLGWGNTYLLMAGLMLAGALTTLWAPEPE  185 (402)
T ss_pred             ChhhhhHHHHHHHHHHHHHH-------HHHhHHHHHHHhc-----------ccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            78889999999999999999       9988887776432           14999999988777666555566788876


Q ss_pred             HH
Q psy12745         87 KF   88 (175)
Q Consensus        87 ~~   88 (175)
                      +.
T Consensus       186 ~~  187 (402)
T PRK11902        186 VP  187 (402)
T ss_pred             cc
Confidence            53

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.38  E-value=0.00068  Score=57.66  Aligned_cols=63  Identities=6%  Similarity=0.083  Sum_probs=51.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++||+..++...++.+|.       +++..++..+...           .++||.+|++.++..++..+..+++||+|
T Consensus       137 ~~~~rg~~~~i~~~g~~lG~-------llg~~l~~~l~~~-----------~~GWr~~f~i~a~l~ll~~l~~~~~~e~~  198 (491)
T PRK11010        137 PAEERGAGAAISVLGYRLAM-------LVSGGLALWLADR-----------YLGWQGMYWLMAALLIPCIIATLLAPEPT  198 (491)
T ss_pred             ChhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHhc-----------ccCHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            77899999999999999999       9988887776331           25999999998887777666666789987


Q ss_pred             H
Q psy12745         87 K   87 (175)
Q Consensus        87 ~   87 (175)
                      +
T Consensus       199 ~  199 (491)
T PRK11010        199 D  199 (491)
T ss_pred             c
Confidence            4

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.34  E-value=0.00025  Score=59.39  Aligned_cols=62  Identities=15%  Similarity=0.254  Sum_probs=49.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCccccccccc-chHHHHHHhhHHHHHHHHH-HhhcCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMC-SWRIFLIVSTFPSLAGALL-VFFIPE   84 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~-~Wr~~~~~~~i~~~~~~~~-~~~lpE   84 (175)
                      |+++|++..++...+..+|.       +++..++..+..            .+ +||++|++.++++++..+. ..+.+|
T Consensus       161 ~~~~r~~~~~~~~~~~~~g~-------~i~~~l~~~l~~------------~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       161 PPKERSRLLGMSTSGFQLGT-------FIFLPISGWLCE------------SWGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------ccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            78899999999999999999       888888766632            23 8999999998877765444 445678


Q ss_pred             ChH
Q psy12745         85 SPK   87 (175)
Q Consensus        85 SP~   87 (175)
                      +|+
T Consensus       222 ~p~  224 (465)
T TIGR00894       222 DPS  224 (465)
T ss_pred             Ccc
Confidence            885

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.33  E-value=0.00051  Score=56.60  Aligned_cols=65  Identities=15%  Similarity=0.137  Sum_probs=49.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++|++..++...++.+|.       +++..+...+.            +..+||+++++..++.++.+......||++
T Consensus       136 ~~~~r~~~~~~~~~~~~lg~-------~~~~~l~~~l~------------~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~  196 (426)
T PRK12307        136 PKHLKSKASAFLVSGFGIGN-------IIAAYFMPSFA------------EAYGWRAAFFVGLLPVLLVIYIRARAPESK  196 (426)
T ss_pred             CHhHhhHhhhHHHHHHhHHH-------HHHHHHHHHHc------------ccCCHHHHHHHHHHHHHHHHHHHHHCCCCh
Confidence            77899999999999999999       88876655542            235899999987666555555556679998


Q ss_pred             HHHH
Q psy12745         87 KFLM   90 (175)
Q Consensus        87 ~~L~   90 (175)
                      +|..
T Consensus       197 ~~~~  200 (426)
T PRK12307        197 EWEE  200 (426)
T ss_pred             HHHH
Confidence            7753

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.16  E-value=0.00043  Score=55.41  Aligned_cols=62  Identities=15%  Similarity=0.247  Sum_probs=47.9

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH-HHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL-LVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~-~~~~lpES   85 (175)
                      |+++|++..++.+....+|.       ++++.++..+..            ..+||+.+.+.+++.++..+ ..++.||+
T Consensus       112 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (399)
T TIGR00893       112 PASERATAVSIFNSAQGLGG-------IIGGPLVGWILI------------HFSWQWAFIIEGVLGIIWGVLWLKFIPDP  172 (399)
T ss_pred             CHHHHHHHHHHHHHhchHHH-------HHHHHHHHHHHH------------hCCchHHHHHHHHHHHHHHHHhhheecCC
Confidence            77899999999999999999       999888776532            35899999988777666543 34456776


Q ss_pred             hH
Q psy12745         86 PK   87 (175)
Q Consensus        86 P~   87 (175)
                      |+
T Consensus       173 ~~  174 (399)
T TIGR00893       173 PQ  174 (399)
T ss_pred             CC
Confidence            63

>PRK11663 regulatory protein UhpC; Provisional

Probab=96.94  E-value=0.0019  Score=53.86  Aligned_cols=64  Identities=9%  Similarity=0.130  Sum_probs=50.1

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES   85 (175)
                      |+++||+..++.+...++|.       ++++.++..+..            ..+||+.+.+.+++.++. ++..+++||+
T Consensus       141 ~~~~rg~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~gw~~~f~~~~i~~~~~~~~~~~~~~~~  201 (434)
T PRK11663        141 SRTERGGWWAIWNTAHNVGG-------ALIPLVVGAIAL------------HYGWRYGMMIAGIIAIVVGLFLCWRLRDK  201 (434)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------cccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            77899999999999999999       888877666532            369999999887766554 4455678999


Q ss_pred             hHHH
Q psy12745         86 PKFL   89 (175)
Q Consensus        86 P~~L   89 (175)
                      |++.
T Consensus       202 p~~~  205 (434)
T PRK11663        202 PQAM  205 (434)
T ss_pred             Hhhc
Confidence            9764

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=96.79  E-value=0.0036  Score=51.87  Aligned_cols=58  Identities=16%  Similarity=0.251  Sum_probs=48.2

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIP   83 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lp   83 (175)
                      |+++|++.++....+.+++.       ++|.-++.++-            +.+|||..|..-+..+++.+ ..+..+|
T Consensus       131 pp~~~~~Aiaiv~~G~tlA~-------v~GvPLGt~ig------------~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         131 PPGKRGRALALVFTGLTLAT-------VLGVPLGTFLG------------QLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             CccchhhHHHHHHHHHHHHH-------HHhccHHHHHH------------HHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            88899999999999999999       88888877773            34799999998888888754 4566688

>PRK03545 putative arabinose transporter; Provisional

Probab=96.76  E-value=0.0035  Score=51.25  Aligned_cols=61  Identities=18%  Similarity=0.203  Sum_probs=47.6

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      |+++|++..++.+.+.++|.       ++++.++..+..            ..+||+.|.+.++.+++.. +..+++||.
T Consensus       127 ~~~~r~~~~g~~~~~~~~g~-------~ig~~l~~~l~~------------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  187 (390)
T PRK03545        127 PAGKKAQALSLLATGTALAM-------VLGLPLGRVIGQ------------YLGWRTTFLAIGGGALITLLLLIKLLPLL  187 (390)
T ss_pred             ChhhhhhHHHHHHHHHHHHH-------HHHhhHHHHHHH------------HhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            78899999999999999999       888888766632            2599999999887766643 445557876


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      |
T Consensus       188 ~  188 (390)
T PRK03545        188 P  188 (390)
T ss_pred             C
Confidence            5

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=96.65  E-value=0.0057  Score=50.72  Aligned_cols=62  Identities=11%  Similarity=0.185  Sum_probs=48.2

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-HhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~lpES   85 (175)
                      |+++|++..++......+|.       +++..++..+..            ..+||+.|++.++..++..+. .+++||+
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~-------~~g~~lg~~l~~------------~~gw~~~f~~~~~~~~i~~~~~~~~lp~~  194 (413)
T PRK15403        134 GQTKGIKLMAIITSIVLVAP-------IIGPLSGAALMH------------FVHWKVLFAIIAVMGLIAFVGLLLAMPET  194 (413)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------hcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            67788999999888889998       888888877632            259999999888876665443 5568998


Q ss_pred             hH
Q psy12745         86 PK   87 (175)
Q Consensus        86 P~   87 (175)
                      ++
T Consensus       195 ~~  196 (413)
T PRK15403        195 VK  196 (413)
T ss_pred             cc
Confidence            64

>PTZ00207 hypothetical protein; Provisional

Probab=96.51  E-value=0.0065  Score=53.00  Aligned_cols=81  Identities=7%  Similarity=-0.088  Sum_probs=51.8

Q ss_pred             CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHH--HhhcCC
Q psy12745          8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALL--VFFIPE   84 (175)
Q Consensus         8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~--~~~lpE   84 (175)
                      +++||...++...+.++|.       .+.+.+...+..             .+|+..+++.++.+++. ++.  ....|+
T Consensus       150 p~~RG~a~Gi~~~~~gLGs-------aI~~~l~~~l~~-------------~~~~~~fl~l~vl~~vv~ll~~~~vr~p~  209 (591)
T PTZ00207        150 PSNRGAVVAIMKTFTGLGS-------AILGSIQLAFFS-------------DNTSAYFFFLMSFALVVGILAIVFMRLPP  209 (591)
T ss_pred             hhhhHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHHHHHhheeCCc
Confidence            3689999999999999999       654444333311             35766666555544442 333  333588


Q ss_pred             ChHHHHhcCChHHHHHHHHHHhhc
Q psy12745         85 SPKFLMTHGRSDDALDVFQSMYAR  108 (175)
Q Consensus        85 SP~~L~~~g~~~~a~~~l~~l~~~  108 (175)
                      +|+|..++++.+++++..+++++.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~  233 (591)
T PTZ00207        210 FHLTGYQEKHLDEEEKAQRLMRKG  233 (591)
T ss_pred             chhhcccccCCCHHHHHHHhhhhh
Confidence            888877776667777766665443

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.51  E-value=0.0044  Score=49.88  Aligned_cols=63  Identities=11%  Similarity=0.275  Sum_probs=42.7

Q ss_pred             CCCCchhh--HHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH-HHhhcC
Q psy12745          7 TKRDTKKI--IYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL-LVFFIP   83 (175)
Q Consensus         7 p~~~Rg~~--~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~-~~~~lp   83 (175)
                      |++.|+..  .+......++|.       ++++.++..+..            ..+||+.|++.+++.++..+ ..+++|
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~g~-------~ig~~~~~~l~~------------~~~~~~~f~~~~~~~~~~~~~~~~~~~  177 (375)
T TIGR00899       117 DRTGREAVMFSSVMRAQISLAW-------VIGPPLAFWLAL------------GFGFTVMFLTAALAFVLCGVLVWLFLP  177 (375)
T ss_pred             hhcchhhHHHHHHHHHHHhHHH-------HHhhhHHHHHHH------------hcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            44455532  466666777888       888877766632            35899999998887666544 455689


Q ss_pred             CChHH
Q psy12745         84 ESPKF   88 (175)
Q Consensus        84 ESP~~   88 (175)
                      |+|+.
T Consensus       178 ~~~~~  182 (375)
T TIGR00899       178 SYPRG  182 (375)
T ss_pred             CcccC
Confidence            98854

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=96.50  E-value=0.005  Score=52.30  Aligned_cols=62  Identities=8%  Similarity=0.130  Sum_probs=49.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES   85 (175)
                      |+++|++..++....+.+|.       ++++.++..+..            ..+||+.|++.....++. .+..+++||+
T Consensus       125 ~~~~r~~~~g~~~~~~~~g~-------~~gp~lgg~l~~------------~~gwr~~f~i~~~~~~~~~~l~~~~l~~~  185 (495)
T PRK14995        125 EEKQRNMALGVWAAVGSGGA-------AFGPLVGGILLE------------HFYWGSVFLINVPIVLVVMGLTARYVPRQ  185 (495)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhc------------cCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            67799999999999999999       999999888743            359999999876655553 4455668887


Q ss_pred             hH
Q psy12745         86 PK   87 (175)
Q Consensus        86 P~   87 (175)
                      |+
T Consensus       186 ~~  187 (495)
T PRK14995        186 AG  187 (495)
T ss_pred             CC
Confidence            63

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=96.42  E-value=0.0037  Score=52.02  Aligned_cols=62  Identities=13%  Similarity=0.282  Sum_probs=47.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHH--HHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIA--YFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIP   83 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~--~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lp   83 (175)
                      |++.||...++.+.+.++|.       .+...+.  ..+.            .+.+||..|++.++.+++. ++..+.+.
T Consensus       147 sr~eRG~~~siWn~shNiGG-------al~~~~~~la~~~------------~~~~w~~~f~~pgiiaiival~~~~~~r  207 (448)
T COG2271         147 SRKERGTWWSIWNTSHNIGG-------ALAPLVALLAFFA------------FHGGWRAAFYFPGIIAIIVALILLFLLR  207 (448)
T ss_pred             CccccCceEEEehhhhhccc-------chHHHHHHHHHHH------------hccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            78899999999999999999       5555554  2221            2359999999999988875 45566678


Q ss_pred             CChH
Q psy12745         84 ESPK   87 (175)
Q Consensus        84 ESP~   87 (175)
                      |+|+
T Consensus       208 d~Pq  211 (448)
T COG2271         208 DRPQ  211 (448)
T ss_pred             CCcc
Confidence            8883

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.39  E-value=0.011  Score=49.22  Aligned_cols=64  Identities=8%  Similarity=0.137  Sum_probs=47.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES   85 (175)
                      |+++||...++.+...++|.       .+++.+......           ...+||..|++.++++++. ++..+++||+
T Consensus       148 ~~~~rg~~~~~~~~~~~~g~-------~~~~~l~~~~~~-----------~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~  209 (438)
T TIGR00712       148 SQSERGTIVSIWNCAHNIGG-------GIPPLLVLLGMA-----------WFNDWHAALYFPAICAIIVALFAFAMMRDT  209 (438)
T ss_pred             CcccchhHHHHHHHHHHhHh-------HHHHHHHHHHHH-----------HhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            77899999999999999988       776655433211           1248999999988876664 4556678998


Q ss_pred             hHH
Q psy12745         86 PKF   88 (175)
Q Consensus        86 P~~   88 (175)
                      |+.
T Consensus       210 ~~~  212 (438)
T TIGR00712       210 PQS  212 (438)
T ss_pred             HHh
Confidence            865

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=96.32  E-value=0.01  Score=48.43  Aligned_cols=61  Identities=11%  Similarity=0.236  Sum_probs=45.4

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      |+++|++..+....+..+|.       .++..++..+.            +..+||+.+.+.++..++.. ...+++||.
T Consensus       121 ~~~~~~~~~~~~~~~~~~g~-------~~g~~l~~~l~------------~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~  181 (382)
T PRK10091        121 KPGKVTAAVAGMVSGMTVAN-------LLGIPLGTYLS------------QEFSWRYTFLLIAVFNIAVLASIYFWVPDI  181 (382)
T ss_pred             ChHHhhHHHHHHHHHHHHHH-------HHhccHHHHHh------------hhccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            66789999998888888888       77777766552            23689999999887766543 345568886


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      +
T Consensus       182 ~  182 (382)
T PRK10091        182 R  182 (382)
T ss_pred             C
Confidence            5

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.25  E-value=0.0093  Score=52.07  Aligned_cols=63  Identities=13%  Similarity=0.182  Sum_probs=36.5

Q ss_pred             cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH--H
Q psy12745          2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL--V   79 (175)
Q Consensus         2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~--~   79 (175)
                      +|+. |.|.|+....+.........       ..+..++..+.            ...+|||.+++.++...+.+++  .
T Consensus       156 sEl~-p~k~R~~~~~~~~~~~i~~~-------~~~~~ia~~~~------------~~~~WRw~~~~~~i~~~i~~vl~~~  215 (599)
T PF06609_consen  156 SELV-PNKWRGLGLAIASIPFIITT-------WISPLIAQLFA------------AHSGWRWIFYIFIIWSGIALVLIFF  215 (599)
T ss_pred             HHhc-ccchhhhHhHHHHHHHHhhh-------cccHHHHHHhc------------cCCCcchHHHHHHHHHHHHHHHHHH
Confidence            3555 67788776665554433333       34455555442            2359999999998866654333  3


Q ss_pred             hhcCC
Q psy12745         80 FFIPE   84 (175)
Q Consensus        80 ~~lpE   84 (175)
                      ++.|.
T Consensus       216 fY~PP  220 (599)
T PF06609_consen  216 FYFPP  220 (599)
T ss_pred             HhCCC
Confidence            34453

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=96.22  E-value=0.015  Score=39.45  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=45.1

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      |+++|+...+..+....+|.       .+++.+...+..            ..+|+..+.+..+..++.. ...++.||+
T Consensus        81 ~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        81 PPEERGVALGLMSAGIALGP-------LLGPPLGGVLAQ------------FLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             ChhhhhHHHHHHHHhHHHHH-------HHhHHhHHHHhc------------ccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            77899999999999999999       888888777632            3589998888777666544 344455664

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=96.21  E-value=0.011  Score=48.72  Aligned_cols=62  Identities=13%  Similarity=0.134  Sum_probs=48.4

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      |+++|++..+.....+++|.       +++..++..+..            ..+||+.|++.++.+++.. +....+||+
T Consensus       138 ~~~~~~~a~~~~~~~~~~g~-------~ig~~l~~~l~~------------~~gw~~~f~~~~~l~~~~~l~~~~~~p~~  198 (394)
T PRK10213        138 PPRTVPKALSVIFGAVSIAL-------VIAAPLGSFLGE------------LIGWRNVFNAAAVMGVLCIFWIIKSLPSL  198 (394)
T ss_pred             CHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------hcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            67799999999999999999       999988887743            3699999998877666543 334457887


Q ss_pred             hH
Q psy12745         86 PK   87 (175)
Q Consensus        86 P~   87 (175)
                      |+
T Consensus       199 ~~  200 (394)
T PRK10213        199 PG  200 (394)
T ss_pred             Cc
Confidence            63

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=96.20  E-value=0.015  Score=46.89  Aligned_cols=62  Identities=13%  Similarity=0.233  Sum_probs=47.3

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      |+++|++..++.+....+|.       ++++.++..+..            ..+||..+.+.++..++.. +..++.||+
T Consensus       123 ~~~~~~~~~~~~~~~~~~g~-------~~g~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (385)
T TIGR00710       123 PGEELSRIYSILMPVLALAP-------AVAPLLGGYILV------------WLSWHAIFAFLSLAGILLSALIFFILPET  183 (385)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            77899999999999999999       888888766532            3589999988777666543 445567887


Q ss_pred             hH
Q psy12745         86 PK   87 (175)
Q Consensus        86 P~   87 (175)
                      ++
T Consensus       184 ~~  185 (385)
T TIGR00710       184 LP  185 (385)
T ss_pred             CC
Confidence            64

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG2532|consensus

Probab=96.19  E-value=0.012  Score=50.01  Aligned_cols=63  Identities=13%  Similarity=0.170  Sum_probs=49.5

Q ss_pred             cCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHH-hhcCC
Q psy12745          6 ETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLV-FFIPE   84 (175)
Q Consensus         6 ~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~-~~lpE   84 (175)
                      .|+++|+++.++...+..+|.       +++..++-.+...           ..||+.+|++.++.+++..++. ++-.|
T Consensus       157 ~P~~Ers~~~ail~~g~q~g~-------v~~mp~sg~lc~s-----------~~GW~sifY~~g~~g~i~~~~w~~~~~d  218 (466)
T KOG2532|consen  157 APPNERSTFIAILTAGSQLGT-------IITMPVSGLLCES-----------SLGWPSIFYVFGIVGLIWFILWFLFYSD  218 (466)
T ss_pred             CCHHHHHHHHHHHHHHHHHHH-------HHHHHhHHHHhcc-----------CCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence            499999999999999999999       8887555555322           3699999999999888866553 44578


Q ss_pred             Ch
Q psy12745         85 SP   86 (175)
Q Consensus        85 SP   86 (175)
                      +|
T Consensus       219 ~P  220 (466)
T KOG2532|consen  219 SP  220 (466)
T ss_pred             Cc
Confidence            88

>TIGR00900 2A0121 H+ Antiporter protein

Probab=96.19  E-value=0.0095  Score=47.37  Aligned_cols=52  Identities=10%  Similarity=-0.027  Sum_probs=41.9

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL   77 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~   77 (175)
                      |+++|++..++.+....+|.       ++++.++..+..            ..+||+.+.+.++..++..+
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~-------~~g~~l~~~l~~------------~~g~~~~~~~~~~~~~~~~~  173 (365)
T TIGR00900       122 PEEQLTQANSLSQAVRSLFY-------IVGPGIGGLMYA------------TLGIKWAIWVDAVGFAISAL  173 (365)
T ss_pred             CHHHHHHHHhHHHHHHHHHH-------HHHHHHHHHHHH------------HhhHHHHHHHHHHHHHHHHH
Confidence            67799999999999999999       999988877743            35899999888776555433

>PRK12382 putative transporter; Provisional

Probab=96.15  E-value=0.019  Score=46.83  Aligned_cols=61  Identities=8%  Similarity=0.182  Sum_probs=44.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++|++..++.+.+...|.       ++++.++..+..            ..+||..+.+..+..++.+......||.|
T Consensus       142 ~~~~r~~a~~~~~~~~~~g~-------~~g~~~~~~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (392)
T PRK12382        142 GPKHSGKVMSWNGMAMYGAL-------AAGAPLGLLLHS------------HFGFAALALTTMVLPLLAWAFNGTVRKVP  202 (392)
T ss_pred             CccccchhhhHHHHHHHHHH-------HHHHHHHHHHHh------------ccChHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            67899999999999999988       888888766632            25899987776555444444444456654

>PRK10489 enterobactin exporter EntS; Provisional

Probab=95.98  E-value=0.018  Score=47.51  Aligned_cols=62  Identities=8%  Similarity=0.002  Sum_probs=48.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++|++..++......+|.       ++++.++..+..            ..+||+.+.+..+..++..+..+.+||+|
T Consensus       140 ~~~~~~~~~~~~~~~~~~g~-------~~g~~l~g~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  200 (417)
T PRK10489        140 GRENLMQAGAITMLTVRLGS-------VISPALGGLLIA------------AGGVAWNYGLAAAGTFITLLPLLRLPALP  200 (417)
T ss_pred             CHHHHHHHHHHHHHHHhHHH-------HhHHHHHHHHHH------------HHhhHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            67789999999989999999       888888776633            24899988888777666666666788876


Q ss_pred             H
Q psy12745         87 K   87 (175)
Q Consensus        87 ~   87 (175)
                      +
T Consensus       201 ~  201 (417)
T PRK10489        201 P  201 (417)
T ss_pred             C
Confidence            4

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=95.93  E-value=0.027  Score=45.42  Aligned_cols=61  Identities=20%  Similarity=0.417  Sum_probs=47.1

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES   85 (175)
                      |+++|++..++.+....+|.       .+++.++..+..            .++||+.+.+.++..++. ++..+++||+
T Consensus       109 ~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (377)
T PRK11102        109 PKEEFSRMMSFVTLVMTIAP-------LLAPIIGGWLLV------------WFSWHAIFWVLALAAILAAALVFFFIPET  169 (377)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            67789999999999999999       888888766632            368999998877766654 3445667887


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      +
T Consensus       170 ~  170 (377)
T PRK11102        170 L  170 (377)
T ss_pred             C
Confidence            5

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.88  E-value=0.014  Score=48.09  Aligned_cols=73  Identities=15%  Similarity=0.113  Sum_probs=49.6

Q ss_pred             cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHh
Q psy12745          2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVF   80 (175)
Q Consensus         2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~   80 (175)
                      .|++.++++|++..++.+.+.++|.       ++++.+...+....     .+..+..+||+++.+.++.+++.. +..+
T Consensus       125 ~~~~~~~~~R~~~~~~~~~~~~~g~-------~l~~~~~~~l~~~~-----~~~~~~~g~~~~~~i~~~l~~~~~~~~~~  192 (437)
T TIGR00792       125 PAITLDPRERESLSTFRRFGATLGG-------LLVAVIVLPLVSYF-----GGGDDKFGWFMFALVLALIGVVSLIICFF  192 (437)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh-----CCCcccccHHHHHHHHHHHHHHHHHHHHc
Confidence            4666677889999999999999988       77766644443211     000124689999988888776654 4455


Q ss_pred             hcCCCh
Q psy12745         81 FIPESP   86 (175)
Q Consensus        81 ~lpESP   86 (175)
                      +.+|.+
T Consensus       193 ~~~e~~  198 (437)
T TIGR00792       193 GTKERY  198 (437)
T ss_pred             CCEecC
Confidence            678865

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=95.88  E-value=0.0061  Score=48.30  Aligned_cols=61  Identities=23%  Similarity=0.504  Sum_probs=46.7

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-HhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~lpES   85 (175)
                      |+++|++..+..+....+|.       ++++.++..+..            ..+||+.+++.++..++..++ ..+++|.
T Consensus       115 ~~~~~~~~~~~~~~~~~~g~-------~~g~~l~~~l~~------------~~~~~~~~~~~~~~~~~~~il~~~~~~~~  175 (352)
T PF07690_consen  115 PPEERGRAFGILSAGFSLGS-------ILGPLLGGFLIS------------YFGWRWAFLISAILSLIAAILFILFLPEP  175 (352)
T ss_dssp             CTCCHHHHHHHHHHHHHHHH-------HHHHHHHHHCCC------------HCHHCCHHHHHHHHHHHHHHHHHCCC---
T ss_pred             hhhhhhhccccccchhhhhh-------hcccchhhhhhh------------ccccccccccccchhhhhhhhHhhhhhhc
Confidence            67899999999999999999       999999888732            358999999998877776543 3455555


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      |
T Consensus       176 ~  176 (352)
T PF07690_consen  176 P  176 (352)
T ss_dssp             S
T ss_pred             c
Confidence            5

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=95.80  E-value=0.039  Score=45.30  Aligned_cols=63  Identities=16%  Similarity=0.131  Sum_probs=44.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH-HHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL-LVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~-~~~~lpES   85 (175)
                      |+++|++..++......+|.       ++++.++..+..            ..+||+.+++.++..++..+ ..+.+||+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~-------~~g~~i~~~l~~------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  191 (406)
T PRK15402        131 EEADAIKITALMANVALLAP-------LLGPLVGAALIH------------VLPWRGMFVLFAALAALSFFGLWRAMPET  191 (406)
T ss_pred             ChhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------ccCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            66778887777777777777       777777665532            25899999887777665443 44567888


Q ss_pred             hHH
Q psy12745         86 PKF   88 (175)
Q Consensus        86 P~~   88 (175)
                      ++.
T Consensus       192 ~~~  194 (406)
T PRK15402        192 AGR  194 (406)
T ss_pred             Ccc
Confidence            643

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=95.78  E-value=0.034  Score=45.40  Aligned_cols=61  Identities=16%  Similarity=0.197  Sum_probs=44.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++|++..++.+....+|.       +++..++..+..            ..+||..+++..+.+++..+.....||++
T Consensus       142 ~~~~r~~~~~~~~~~~~~g~-------~~g~~l~~~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (399)
T PRK05122        142 GALHTGRVISWNGIATYGAL-------AIGAPLGVLLYH------------WGGLAGLGLLIMLLALLGLLLARPRPAVP  202 (399)
T ss_pred             ChhhhccchhhhhhhhhHHH-------HHHHHHHHHHHH------------cccHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            77899999999988888888       888888766633            36899998877666555444444455543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=95.71  E-value=0.0097  Score=49.77  Aligned_cols=62  Identities=11%  Similarity=0.201  Sum_probs=47.2

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      |+++|++..++......+|.       .+++.++..+.            +..+||+.|++..+++++.. +..+++||.
T Consensus       120 ~~~~r~~~~~~~~~~~~~g~-------~~g~~~~~~l~------------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~  180 (485)
T TIGR00711       120 PPEKRGRAMAIWGLTVLVAP-------ALGPTLGGWII------------ENYHWRWIFLINVPIGIIVVVVAFFILPRD  180 (485)
T ss_pred             CHHHHHHHHHHHHHHHHHHh-------hhhhccHhHhc------------cCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence            77799999999999999999       88888876662            23699999998877666543 445567775


Q ss_pred             hH
Q psy12745         86 PK   87 (175)
Q Consensus        86 P~   87 (175)
                      ++
T Consensus       181 ~~  182 (485)
T TIGR00711       181 KP  182 (485)
T ss_pred             cc
Confidence            53

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.69  E-value=0.031  Score=49.27  Aligned_cols=72  Identities=14%  Similarity=0.123  Sum_probs=48.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCC-----c---cccccccc--chHHHHHHhhHHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTY-----P---VFDFFLMC--SWRIFLIVSTFPSLAGA   76 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~-----~---~~~~~~~~--~Wr~~~~~~~i~~~~~~   76 (175)
                      |+++|++..++.+....+|.       ++|.+++..+.......     +   .......|  +||..|++.+++.++..
T Consensus       202 ~~~~~~~~~~i~~~~~~iG~-------~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~  274 (633)
T TIGR00805       202 KSKNSPLYIGILESIAVFGP-------AFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTS  274 (633)
T ss_pred             CccccHHHHHHHHHHHHhhh-------HHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999       99988877776532110     0   00000112  38888888887777655


Q ss_pred             HHHhhcCCC
Q psy12745         77 LLVFFIPES   85 (175)
Q Consensus        77 ~~~~~lpES   85 (175)
                      +..+++|+.
T Consensus       275 v~l~~~p~~  283 (633)
T TIGR00805       275 IPFFFFPKA  283 (633)
T ss_pred             HHHHhCccc
Confidence            555566654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK11043 putative transporter; Provisional

Probab=95.60  E-value=0.045  Score=44.75  Aligned_cols=61  Identities=8%  Similarity=0.040  Sum_probs=42.6

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++|+...+.......+|.       .+++.++..+..            ..+||..+.+..+..++..+..++++|++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~-------~~g~~i~~~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        124 PAQKANRVFATIMPLVALSP-------ALAPLLGAWLLN------------HFGWQAIFATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------cCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            66677777777666777777       777777665532            35999999988777776655555666654

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=95.57  E-value=0.038  Score=45.09  Aligned_cols=61  Identities=15%  Similarity=0.149  Sum_probs=46.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      |+++|++..++.+....+|.       ++++.++..+..            ..+||..+.+.++.+++.. +...++||+
T Consensus       121 ~~~~r~~~~~~~~~~~~i~~-------~~~~~i~~~l~~------------~~g~~~~~~~~~~~~~i~~~~~~~~~~~~  181 (392)
T PRK10473        121 DDRRRAKVLSLLNGITCIIP-------VLAPVLGHLIML------------KFPWQSLFYTMAAMGILVLLLSLFILKET  181 (392)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------CcChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            67799999999998888888       888888776632            3589999988877666543 345667887


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      +
T Consensus       182 ~  182 (392)
T PRK10473        182 R  182 (392)
T ss_pred             C
Confidence            5

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=95.41  E-value=0.029  Score=46.20  Aligned_cols=62  Identities=19%  Similarity=0.108  Sum_probs=47.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++|++..++.+....+|.       ++|+.++-.+..             +.|+.++.+.....++..+..+++||+|
T Consensus       118 ~~~~~~~a~~~~~~~~~~~~-------~~Gp~lgG~l~~-------------~~~~~~~~i~~~~~~~~~~~~~~l~~~~  177 (393)
T PRK11195        118 PGEKLVKANGWMEGSTIAAI-------LLGTVLGGALAD-------------PHAEAALAVCALIYLLAALFNLFIPRLG  177 (393)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence            77899999999999999999       999988877632             3477777766555444455567789987


Q ss_pred             HH
Q psy12745         87 KF   88 (175)
Q Consensus        87 ~~   88 (175)
                      ..
T Consensus       178 ~~  179 (393)
T PRK11195        178 AR  179 (393)
T ss_pred             cc
Confidence            54

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=95.35  E-value=0.042  Score=44.85  Aligned_cols=62  Identities=10%  Similarity=0.119  Sum_probs=45.1

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES   85 (175)
                      |+++|+...+..+.+..+|.       ++++.++..+..            ..+||..+.+.++..++. .+..+++||+
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~-------~~g~~i~~~l~~------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~  186 (394)
T PRK11652        126 EGTQLRHANSLLNMGILVSP-------LLAPLIGGLLTT------------LFGWRACYLFLLLLGAGVTFSMARWMPET  186 (394)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------ccChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            55678888888888888888       888877766532            358999999887766554 3445668998


Q ss_pred             hH
Q psy12745         86 PK   87 (175)
Q Consensus        86 P~   87 (175)
                      |+
T Consensus       187 ~~  188 (394)
T PRK11652        187 RP  188 (394)
T ss_pred             Cc
Confidence            64

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=95.22  E-value=0.041  Score=44.85  Aligned_cols=61  Identities=8%  Similarity=0.008  Sum_probs=45.6

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      |+++|++..+.......+|.       ++++.++..+..            ..+||..+.+.++..++.. +..+++||.
T Consensus       136 ~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (408)
T PRK09874        136 PRNKSGWALGTLSTGGVSGA-------LLGPLAGGLLAD------------SYGLRPVFFITASVLFLCFLVTLFCIREN  196 (408)
T ss_pred             CHhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhCHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            77889999999999889988       888887766632            3589999988877665543 344556776


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      +
T Consensus       197 ~  197 (408)
T PRK09874        197 F  197 (408)
T ss_pred             c
Confidence            4

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=95.19  E-value=0.055  Score=45.31  Aligned_cols=64  Identities=11%  Similarity=0.210  Sum_probs=44.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES   85 (175)
                      |+++|+...++.+.+.++|..      +.+.++...+..            ..+||+.|++.+++.++. ++..+++||+
T Consensus       150 ~~~~r~~~~~~~~~~~~~g~~------~~~~l~~~~~~~------------~~gw~~~f~i~~~~~~~~~~l~~~~~~~~  211 (452)
T PRK11273        150 SQKERGGIVSVWNCAHNVGGG------LPPLLFLLGMAW------------FNDWHAALYMPAFAAILVALFAFAMMRDT  211 (452)
T ss_pred             ChHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHH------------hccHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            778999999999898888761      334443333311            148999999887766654 4556678999


Q ss_pred             hHH
Q psy12745         86 PKF   88 (175)
Q Consensus        86 P~~   88 (175)
                      |+.
T Consensus       212 ~~~  214 (452)
T PRK11273        212 PQS  214 (452)
T ss_pred             Hhh
Confidence            865

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=95.02  E-value=0.017  Score=46.16  Aligned_cols=62  Identities=13%  Similarity=0.239  Sum_probs=46.1

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHH-HHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGL-VIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPE   84 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~-~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpE   84 (175)
                      |+++|+...++.+....+|.       ++++ +++..+.            ...+||+.+++.++..++. ++..++.||
T Consensus       113 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (379)
T TIGR00881       113 SRSERGTWVSFWNCSHNVGG-------GLLPPLVLFGIA------------ELYSWHWVFIVPGIIAIIVSLICFLLLRD  173 (379)
T ss_pred             CHhhheeeEeehhccchhHH-------HHHHHHHHHHHH------------hcCCchhHHHHHHHHHHHHHHHHheeeCC
Confidence            77789999999999999999       8888 4555442            2358999998877766554 444556788


Q ss_pred             ChH
Q psy12745         85 SPK   87 (175)
Q Consensus        85 SP~   87 (175)
                      +|+
T Consensus       174 ~~~  176 (379)
T TIGR00881       174 SPQ  176 (379)
T ss_pred             Ccc
Confidence            775

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=94.97  E-value=0.081  Score=43.64  Aligned_cols=58  Identities=9%  Similarity=0.211  Sum_probs=45.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPE   84 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpE   84 (175)
                      |+++|++..++.....++|.       .+++.++-.+.             .++||+.|++.++..++.. +..+++||
T Consensus       129 ~~~~~~~a~~~~~~~~~~g~-------~ig~~l~g~l~-------------~~g~~~~f~~~~~~~~~~~i~~~~~~~~  187 (400)
T PRK11646        129 RPHQRGRFFSLLMMQDSAGA-------VIGALLGSWLL-------------QYDFRLVCATGAVLFVLAAAFNAWLLPA  187 (400)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------------HhhHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            77899999999999999999       88888877763             2699999998877655543 33445666

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=94.65  E-value=0.074  Score=42.36  Aligned_cols=60  Identities=12%  Similarity=-0.073  Sum_probs=41.2

Q ss_pred             CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-HhhcCCCh
Q psy12745          8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VFFIPESP   86 (175)
Q Consensus         8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~lpESP   86 (175)
                      +++|++..++...+.++|.       +++..+...+.            +..+||+.+++.++..++..+. .++++|.|
T Consensus       121 ~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (377)
T TIGR00890       121 PDKRGLASGIIIGGYGLGS-------FILSPLITSVI------------NLEGVPAAFIYMGIIFLLVIVLGAFLIGYPP  181 (377)
T ss_pred             CcccHHHHHHHHHhcchhH-------hHHHHHHHHHH------------hcccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence            3579999999999999988       65444433331            2368999999888877665433 44555544

>PRK15011 sugar efflux transporter B; Provisional

Probab=94.43  E-value=0.094  Score=42.99  Aligned_cols=56  Identities=14%  Similarity=0.237  Sum_probs=40.1

Q ss_pred             hhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCCh
Q psy12745         12 KKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPESP   86 (175)
Q Consensus        12 g~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpESP   86 (175)
                      +...+..+...++|.       ++++.++..+..            ..+||..|++.++..++.. +...++||+|
T Consensus       142 ~~~~~~~~~~~~lg~-------~~g~~i~~~l~~------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        142 VMFSSFLRAQVSLAW-------VIGPPLAYALAM------------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHHHHHHH-------HHhhHHHHHHHH------------hcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            344567777888888       888888877633            2599999998877666543 4455678875

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=94.33  E-value=0.18  Score=41.18  Aligned_cols=59  Identities=12%  Similarity=0.029  Sum_probs=39.1

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPE   84 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpE   84 (175)
                      +++.++...+....+..+|.       +++......+..            ..+||.+|++.++..++..+...+++|
T Consensus       127 ~~~~~~~~~~~~~~g~~lG~-------~~g~~~~~~l~~------------~~gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       127 NGRTLAKGNAVQIAGVMIGF-------FGGGAGTLVLFG------------KFGQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             CHhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            44555667777777778888       877765544422            359999999888776665444444443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=94.00  E-value=0.16  Score=47.23  Aligned_cols=72  Identities=8%  Similarity=-0.030  Sum_probs=44.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhh-HHHHHHHHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVST-FPSLAGALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~-i~~~~~~~~~~~lpES   85 (175)
                      |+++|++..++.+.+..+|.       +++++++..+..........   ...+|++.+.+.. +..++.++..+++||+
T Consensus       133 ~~~~r~~~~~~~~~~~~ig~-------~lg~~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (1146)
T PRK08633        133 GKENLSRANGLLEAFTIVAI-------LAGTALFSFLFESVNGNTPS---EILGRIAPAGLVLLAVAVLGLIFAYRLPKV  202 (1146)
T ss_pred             CcccchhhhhHHHHHHHHHH-------HHHHHHHHHHHHhhcccccc---ccccchHHHHHHHHHHHHHHHHHHhcCcCC
Confidence            67899999999999999999       99998887774421000000   0123444443333 3333444556678998


Q ss_pred             hHH
Q psy12745         86 PKF   88 (175)
Q Consensus        86 P~~   88 (175)
                      |.+
T Consensus       203 ~~~  205 (1146)
T PRK08633        203 PAA  205 (1146)
T ss_pred             CCC
Confidence            865

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=93.92  E-value=0.13  Score=48.12  Aligned_cols=61  Identities=15%  Similarity=0.086  Sum_probs=48.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++|+...++.+...++|.       ++|+.++-.+...            .+||+.|++..+..++.++..+++||++
T Consensus       138 ~~~~~~~a~~~~~~~~~ig~-------~igp~l~g~l~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        138 NKDELLGANALVEAGTFIAI-------LLGTIIGGLATIS------------GNFVILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             CccccchhhHHHHHHHHHHH-------HHHHHHHHHHHhc------------cccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            67899999999999999999       9999998887443            5899998666666666666666777764

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=93.88  E-value=0.11  Score=40.73  Aligned_cols=57  Identities=14%  Similarity=0.320  Sum_probs=44.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhc
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFI   82 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~l   82 (175)
                      |+++|++..++.+....+|.       .+++.++..+.+.            .+||..+.+.+++.++..+...++
T Consensus       117 ~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~  173 (352)
T cd06174         117 PPKERGRALGLFSAGFGLGA-------LLGPLLGGLLAES------------LGWRWLFLILAILGLLLALLLLFL  173 (352)
T ss_pred             CccchhhhhhHHHHHHHHHH-------HHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999       9999888877433            479999988877766654443333

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=93.85  E-value=0.18  Score=42.21  Aligned_cols=67  Identities=7%  Similarity=-0.087  Sum_probs=42.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      |++.|+...++......+|.       ++++.+.-.+....  . .   .+..+|+..+.+.++.+++.. +..++.||+
T Consensus       394 p~~~r~~~~g~~~~~~~~g~-------~~~~~~~p~~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  460 (479)
T PRK10077        394 PNAIRGKALAIAVAAQWIAN-------YFVSWTFPMMDKNS--W-L---VAHFHNGFSYWIYGCMGVLAALFMWKFVPET  460 (479)
T ss_pred             ChhHHHHHHHHHHHHHHHHH-------HHHHHHhHHHHhcc--c-h---hhhccCccHHHHHHHHHHHHHHHHHhccccC
Confidence            88899999999999888888       77655543221000  0 0   123678887777666555543 444567887


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      .
T Consensus       461 ~  461 (479)
T PRK10077        461 K  461 (479)
T ss_pred             C
Confidence            4

>TIGR00889 2A0110 nucleoside transporter

Probab=93.67  E-value=0.095  Score=43.58  Aligned_cols=66  Identities=8%  Similarity=-0.018  Sum_probs=46.8

Q ss_pred             CCCCchhhHHHhH-HHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCC
Q psy12745          7 TKRDTKKIIYWRR-VDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPE   84 (175)
Q Consensus         7 p~~~Rg~~~~~~~-~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpE   84 (175)
                      |++.||...++.+ ..+.+|.       ++++.++-.+....      +..+..+||..+.+.+++.++. ++..++++|
T Consensus       338 p~~~~g~~~g~~~~~~~~lg~-------~iGp~l~G~l~~~~------g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~  404 (418)
T TIGR00889       338 PVHIRASAQGLFTLMCNGFGS-------LLGYILSGVMVEKM------FAYGTFDWQTMWLFFAGYIAILAVLFMIFFKY  404 (418)
T ss_pred             CHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHh------ccccCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            8889999999996 6788898       88888876664321      0001147999998887776654 455666787


Q ss_pred             C
Q psy12745         85 S   85 (175)
Q Consensus        85 S   85 (175)
                      +
T Consensus       405 ~  405 (418)
T TIGR00889       405 S  405 (418)
T ss_pred             c
Confidence            7

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=93.66  E-value=0.084  Score=44.39  Aligned_cols=51  Identities=6%  Similarity=-0.022  Sum_probs=38.8

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCccccccccc-chHHHHHHhhHHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMC-SWRIFLIVSTFPSLAGA   76 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~-~Wr~~~~~~~i~~~~~~   76 (175)
                      |++++|...++.+....+|.       ++++.++-.+..            .. +|+..+.+.++..++..
T Consensus       363 ~~~~~g~~~g~~~~~~~lg~-------~igp~i~G~l~~------------~~g~~~~~f~~~~~~~li~~  414 (455)
T TIGR00892       363 GAQRFSSAVGLVTIVECCAV-------LIGPPLAGRLVD------------ATKNYKYIFYASGSIVVSAG  414 (455)
T ss_pred             hHHHHhhHHhHHHHHHHHHH-------Hccccceeeeeh------------hcCCcchHHHHhhHHHHHHH
Confidence            77789999999999999999       888877665522            22 69999888877655443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=93.65  E-value=0.13  Score=43.58  Aligned_cols=70  Identities=13%  Similarity=0.080  Sum_probs=40.7

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhc-CCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFI-PES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~l-pES   85 (175)
                      |+++||...++.....++|.       .++..+...+.......   +..+..+||+.|++.+++.++..+..+++ ++.
T Consensus       153 ~~~~rg~a~g~~~~~~~~g~-------~~~~~~~~~i~~~~~~~---~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~  222 (476)
T PLN00028        153 NGKIVGTANGIAAGWGNLGG-------GVTQLLMPLVFPLIKDA---GAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDL  222 (476)
T ss_pred             ChhheeHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcC
Confidence            78899999999877766776       55544432221100000   00012489999999888776654443343 344


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      |
T Consensus       223 p  223 (476)
T PLN00028        223 P  223 (476)
T ss_pred             C
Confidence            4

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=93.57  E-value=0.074  Score=44.73  Aligned_cols=65  Identities=11%  Similarity=0.054  Sum_probs=45.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES   85 (175)
                      |+++||+..++.+...++|.       +++..++..+....         ...+||..|.+.+++.++. ++..++.+++
T Consensus       152 ~~~~rg~a~gi~~~~~~lG~-------~l~~~i~~~~~~~~---------~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~  215 (467)
T PRK09556        152 PRRKRGRFLGFWNISHNLGG-------AGAGGVALWGANYF---------FDGHVIGMFIFPSIIALIIGFIGLRYGSDS  215 (467)
T ss_pred             CccceeeeEEeeecccchhh-------hHHHHHHHHHHHhh---------ccCcchhHHHHHHHHHHHHHHHHHHhCCCC
Confidence            78899999999999999999       88877765442210         0126999888877766654 3344456777


Q ss_pred             hH
Q psy12745         86 PK   87 (175)
Q Consensus        86 P~   87 (175)
                      |+
T Consensus       216 p~  217 (467)
T PRK09556        216 PE  217 (467)
T ss_pred             hh
Confidence            74

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=93.52  E-value=0.13  Score=41.26  Aligned_cols=72  Identities=15%  Similarity=-0.010  Sum_probs=40.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHH-HHhhHH-HHHHHHHHhhcCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFL-IVSTFP-SLAGALLVFFIPE   84 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~-~~~~i~-~~~~~~~~~~lpE   84 (175)
                      |+++|+...++.....++|.       .++..++..+.......  .+.....+||+.+ +..++. .++..+...+.+|
T Consensus       120 ~~~~r~~~~~~~~~~~~~g~-------~~~~~i~~~l~~~~~~~--~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  190 (366)
T TIGR00886       120 PKKIQGTALGLAAGWGNMGG-------GVAQFVMPPIIGSLIFG--AGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD  190 (366)
T ss_pred             CHhhhhHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHhc--ccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence            67799999999887777777       66666654432210000  0001124899988 433333 3333444555677


Q ss_pred             ChH
Q psy12745         85 SPK   87 (175)
Q Consensus        85 SP~   87 (175)
                      +|+
T Consensus       191 ~~~  193 (366)
T TIGR00886       191 TPP  193 (366)
T ss_pred             CCc
Confidence            763

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=93.43  E-value=0.11  Score=42.41  Aligned_cols=58  Identities=12%  Similarity=-0.064  Sum_probs=39.1

Q ss_pred             CCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCC
Q psy12745          9 RDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPES   85 (175)
Q Consensus         9 ~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpES   85 (175)
                      ++|++..+......++|.       .+++.++..+..            ..+||.+|++.++..++..+...+.||.
T Consensus       124 ~~~~~a~~~~~~~~~lg~-------~igp~lgg~l~~------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~  181 (382)
T PRK11128        124 KQIGLDYGKVRLWGSIAF-------VIGSALTGKLVS------------WFGEQAILWILTAGVASMLLGQLLRPTI  181 (382)
T ss_pred             hhccCCcchHHHHHHHHH-------HHHHHHHHHHHH------------HcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence            456766666777777888       888888877733            2599999987766544444444455664

>PRK03699 putative transporter; Provisional

Probab=93.33  E-value=0.26  Score=40.30  Aligned_cols=54  Identities=9%  Similarity=0.107  Sum_probs=38.2

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL   78 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~   78 (175)
                      |+++|+...+..+..+.+|.       ++++.+...+..           ...+||+++.+.+++.++..+.
T Consensus       125 ~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~l~~-----------~~~gw~~~f~~~~~~~~~~~~~  178 (394)
T PRK03699        125 EGKQRGSRLLFTDSFFSMAG-------MIFPIIAAYLLA-----------RSIEWYWVYACIGLVYVAIFIL  178 (394)
T ss_pred             ccchHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh-----------ccccHHHHHHHHHHHHHHHHHH
Confidence            77789999888888888887       777666544321           1258999999877766654443

>PRK15011 sugar efflux transporter B; Provisional

Probab=93.14  E-value=0.24  Score=40.58  Aligned_cols=58  Identities=5%  Similarity=-0.006  Sum_probs=46.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPE   84 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpE   84 (175)
                      |+ +||...++.+...++|.       .+++.++-.+..            ..+|+.++.+..++.++..+..+++||
T Consensus       335 p~-~~g~~~~~~~~~~~lg~-------~~g~~l~G~i~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        335 PG-QAGSATTLYTNTSRVGW-------IIAGSLAGIVAE------------IWNYHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             CC-CcchHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            54 69999999888889999       888888776633            258999999888888877777767765

>KOG1330|consensus

Probab=92.98  E-value=0.0092  Score=50.27  Aligned_cols=62  Identities=13%  Similarity=0.190  Sum_probs=47.8

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      |..+|++..++.++..++|.       .+|.+++..+.+..          . .||+.|...++.+++.. +++++.+|.
T Consensus       151 ~~~~Rs~~~~ify~~ipvGs-------glG~vvgs~va~~~----------~-~Wr~af~~~avl~vi~~~L~~~f~~eP  212 (493)
T KOG1330|consen  151 PDDKRSRVLGIFYFAIPVGS-------GLGYVVGSVVASLT----------F-WWRWAFRGSAVLGVIVGLLVFLFVREP  212 (493)
T ss_pred             cchhhhHHHHHhhhhccccc-------ceeEEeeeeeccCc----------c-ceEEEEEeehHHHHHHHHHHHhhccCc
Confidence            88899999999999999999       77777766653321          1 29999999988888754 556667775


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      +
T Consensus       213 ~  213 (493)
T KOG1330|consen  213 E  213 (493)
T ss_pred             c
Confidence            4

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=92.97  E-value=0.15  Score=45.82  Aligned_cols=60  Identities=12%  Similarity=0.147  Sum_probs=46.8

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |.+.||...++......+|.       ++++.++..+..             .+...++++.++..++..++..++||+-
T Consensus       678 Pt~~Rgta~Gi~~~~~rlGa-------iigp~i~g~L~~-------------~~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       678 PSDKRATAFGFLNALCKAAA-------VLGILIFGSFVG-------------ITKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------------hhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            88899999999999999999       999988755522             2356788877777777666666789974

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10504 putative transporter; Provisional

Probab=92.95  E-value=0.18  Score=42.23  Aligned_cols=61  Identities=10%  Similarity=0.275  Sum_probs=44.4

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      |+++|+...+......++|.       ++++.++..+..            ..+||+.|.+......+.. +.....|++
T Consensus       128 ~~~~~~~~~~~~~~~~~~g~-------~~g~~~~g~l~~------------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~  188 (471)
T PRK10504        128 PREQYMAAMTFVTLPGQVGP-------LLGPALGGLLVE------------YASWHWIFLINIPVGIIGAIATLMLMPNY  188 (471)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HhhhHHHHHHHh------------hccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            77889999999999999999       888888766632            3689999998766555443 334445654


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      +
T Consensus       189 ~  189 (471)
T PRK10504        189 T  189 (471)
T ss_pred             c
Confidence            3

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=91.92  E-value=0.27  Score=40.06  Aligned_cols=57  Identities=11%  Similarity=0.081  Sum_probs=40.8

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhc
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFI   82 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~l   82 (175)
                      |+++||...++.+....+|.       .+++.+.-.+.            +..+|+..+.+.++..++..+...++
T Consensus       332 ~~~~~g~~~g~~~~~~~~g~-------~~~~~~~g~l~------------~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        332 PPQNRGAALGAYSVFLDLSL-------GITGPLAGLVA------------SWFGYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH------------HHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            78899999999999888888       66655544442            23589999988877766655444343

>PRK10054 putative transporter; Provisional

Probab=91.78  E-value=0.23  Score=40.91  Aligned_cols=59  Identities=12%  Similarity=0.112  Sum_probs=44.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~~lpES   85 (175)
                      |+++|++..++.....++|.       ++++.++..+..             .+||.+|.+.++..++.. +..+++||.
T Consensus       126 ~~~~~~~~~g~~~~~~~lg~-------~igp~l~~~l~~-------------~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        126 SSTSKTKIFSLNYTMLNIGW-------TVGPPLGTLLVM-------------QSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             CHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH-------------hccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            67789999999999999999       888888777631             489999988877666543 334445654

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=91.68  E-value=0.62  Score=38.70  Aligned_cols=71  Identities=15%  Similarity=0.069  Sum_probs=44.6

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCC----ccc----------ccccccchHHHHHHhhHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTY----PVF----------DFFLMCSWRIFLIVSTFPS   72 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~----~~~----------~~~~~~~Wr~~~~~~~i~~   72 (175)
                      |+++|++..+..+...++|.       .+++.++..+.......    +..          ...+..+||+++.+.++..
T Consensus       124 ~~~~~~~~~~~~~~~~~lG~-------~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~  196 (410)
T TIGR00885       124 PESTATRRLNLAQSFNPFGS-------IIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVV  196 (410)
T ss_pred             CHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67789999999999999999       88888877664321000    000          0001246999998777765


Q ss_pred             HHHHHHH--hhcCC
Q psy12745         73 LAGALLV--FFIPE   84 (175)
Q Consensus        73 ~~~~~~~--~~lpE   84 (175)
                      ++..+..  ..+||
T Consensus       197 ~~~~~~~~~~~~p~  210 (410)
T TIGR00885       197 LAVALLIMLTKMPA  210 (410)
T ss_pred             HHHHHHHHHhcCCC
Confidence            5543332  23565

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=91.45  E-value=0.24  Score=41.14  Aligned_cols=70  Identities=14%  Similarity=0.171  Sum_probs=47.2

Q ss_pred             cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccc-cchHHHHHHhhHHHHHHHH-HH
Q psy12745          2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLM-CSWRIFLIVSTFPSLAGAL-LV   79 (175)
Q Consensus         2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~-~~Wr~~~~~~~i~~~~~~~-~~   79 (175)
                      .|++..+++|.++.++.+.+..+|.       ++.+.+...+....      +..+. .+|++...+.++..++..+ ..
T Consensus       129 ~~lt~~~~~R~~l~~~~~~~~~~g~-------~l~~~~~~~l~~~~------g~~~~~~~~~~~~~v~~iv~~v~~~i~~  195 (428)
T PF13347_consen  129 PELTPDPDERTRLSSWRMIFSMIGS-------LLASFLAPILVSWF------GGGDTSNGYRWMALVLAIVGLVFFLITF  195 (428)
T ss_pred             ccccccHhhhhhHHHHHHHHHHHHH-------HHHHHHhhhhhhhh------ccCccchHHHHHHHHHHHHHHHHhhhhh
Confidence            5677667799999999999988888       76666655543221      10111 3899998888777776544 45


Q ss_pred             hhcCC
Q psy12745         80 FFIPE   84 (175)
Q Consensus        80 ~~lpE   84 (175)
                      +..+|
T Consensus       196 ~~~ke  200 (428)
T PF13347_consen  196 FFVKE  200 (428)
T ss_pred             heeee
Confidence            55677

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=91.34  E-value=0.52  Score=39.41  Aligned_cols=54  Identities=13%  Similarity=0.081  Sum_probs=35.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL   78 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~   78 (175)
                      |++.||...++.+....+|..      +.++.+.-.+.            +..+|+..|.+..+.+++.++.
T Consensus       377 p~~~~g~~~g~~~~~~~~g~~------~~g~~v~g~l~------------~~~g~~~~f~~~~~~~~~~~~~  430 (452)
T PRK11273        377 PKKAAGTAAGFTGLFGYLGGS------VAASAIVGYTV------------DFFGWDGGFMVMIGGSILAVIL  430 (452)
T ss_pred             ChhhhhhHHHHHHHHHHHHHH------HhhhhhHHHHH------------HHhcchHHHHHHHHHHHHHHHH
Confidence            888999999998877777650      33454433332            3358999888776665654433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=91.16  E-value=0.36  Score=40.56  Aligned_cols=50  Identities=8%  Similarity=-0.067  Sum_probs=38.4

Q ss_pred             CCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH
Q psy12745          9 RDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL   77 (175)
Q Consensus         9 ~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~   77 (175)
                      ++|++..++.+.+..+|.       .+++.++-.+..            ..+||+.|++.++..++..+
T Consensus       139 ~~r~~a~g~~~~~~~~g~-------~~~~~l~~~l~~------------~~gwr~~f~~~~~~~~~~~v  188 (455)
T TIGR00892       139 RRRPLANGLAMAGSPVFL-------STLAPLNQYLFE------------SFGWRGSFLILGGLLLHCCV  188 (455)
T ss_pred             hhHHHHHHHHHhcccHHH-------HHHHHHHHHHHH------------HhChHHHHHHHHHHHHHHHH
Confidence            589999999999999988       777766555532            36999999998887665433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=90.81  E-value=0.3  Score=39.81  Aligned_cols=46  Identities=13%  Similarity=-0.095  Sum_probs=34.1

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFP   71 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~   71 (175)
                      ++++|++..+......++|.       ++++.++..+..            ..+||..|.+..+.
T Consensus       122 ~~~~~~~~~g~~~~~~slG~-------~~g~~l~g~l~~------------~~g~~~~f~~~~~~  167 (382)
T TIGR00902       122 WQKQFGLDYGKVRLIGSAAF-------IIGSALFGGLIG------------MFDEQNILAILTAG  167 (382)
T ss_pred             HHHHcCCCccHHHHHHHHHH-------HHHHHHHHHHHH------------HcChhHHHHHHHHH
Confidence            34577888888888888888       888887666633            36999998876554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=90.64  E-value=0.46  Score=37.22  Aligned_cols=56  Identities=11%  Similarity=0.053  Sum_probs=44.9

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF   81 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~   81 (175)
                      |+++|+...+..+....+|.       .+++.+...+.+            ..+|+..+.+.++..++..+...+
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~-------~i~~~i~g~l~~------------~~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         295 PPEARGTASGLFNTFGSLGG-------ALGPLLAGLLLD------------TGGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhc------------ccCcchHHHHHHHHHHHHHHHhee
Confidence            67899999999999999999       888888777632            368999999988887776555433

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=90.51  E-value=0.21  Score=40.97  Aligned_cols=61  Identities=13%  Similarity=-0.016  Sum_probs=44.4

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-HhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~lpES   85 (175)
                      |++.|+...++.+...++|.       ++++.+...+..            ..+|+..|++.++.+++..+. .++.||.
T Consensus       413 p~~~~~~~~~~~~~~~~lg~-------~i~~~~~~~~~~------------~~~~~~~f~~~~~~~~~~~i~~~~~~~~~  473 (481)
T TIGR00879       413 PLSLRPKGISIAVAANWLAN-------FIVGFLFPTMLE------------SIGVGGVFIFFGGLNVLGLIFVYFFLPET  473 (481)
T ss_pred             ChHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------hcCccceehhHHHHHHHHHHHHheecccC
Confidence            78899999999999999999       888776555522            257888887777766665443 4556775


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      +
T Consensus       474 ~  474 (481)
T TIGR00879       474 K  474 (481)
T ss_pred             C
Confidence            4

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=90.29  E-value=0.52  Score=40.22  Aligned_cols=42  Identities=10%  Similarity=-0.007  Sum_probs=32.4

Q ss_pred             CchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhH
Q psy12745         10 DTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTF   70 (175)
Q Consensus        10 ~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i   70 (175)
                      +|+...++....+++|.       .+++.++-.+..            ..+||+.|++..+
T Consensus       140 ~~~~~~~~~~~~~nig~-------~~g~~l~g~l~~------------~~gw~~~F~i~~i  181 (489)
T PRK10207        140 RLDGAFTLFYMSINIGS-------LISLSLAPVIAD------------KFGYSVTYNLCGA  181 (489)
T ss_pred             hhhcchhHHHHHHHHHH-------HHHHHHHHHHHH------------hhChHHHHHHHHH
Confidence            45777888899999999       888877666632            3589999988654

>TIGR00806 rfc RFC reduced folate carrier

Probab=89.95  E-value=0.7  Score=39.67  Aligned_cols=61  Identities=8%  Similarity=0.165  Sum_probs=43.5

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHh---hHHHHHHHHHHhhcC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVS---TFPSLAGALLVFFIP   83 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~---~i~~~~~~~~~~~lp   83 (175)
                      |+++|++..+....+..+|.       ++++.++-.+.             ..+||....+.   .....+.++.-+++|
T Consensus       144 P~kER~ratsi~~sg~~vG~-------~Ia~~L~qll~-------------s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP  203 (511)
T TIGR00806       144 PPSRYQRAAAYSRAAVLLGV-------FLSSVLGQLLV-------------TLGWISYSTLNIISLVFMTFSVFLALFLK  203 (511)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-------------hcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence            89999999999999999999       88888877742             25777644433   333333456667888


Q ss_pred             CChH
Q psy12745         84 ESPK   87 (175)
Q Consensus        84 ESP~   87 (175)
                      -.+|
T Consensus       204 ~~~~  207 (511)
T TIGR00806       204 RPKR  207 (511)
T ss_pred             CCch
Confidence            5544

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=89.69  E-value=0.68  Score=37.66  Aligned_cols=53  Identities=15%  Similarity=0.181  Sum_probs=41.7

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL   78 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~   78 (175)
                      |++.||...++.+....+|.       .+++.++..+.            +..+|+..|.+.++..++..+.
T Consensus       341 ~~~~~g~~~~~~~~~~~~g~-------~~gp~~~G~l~------------~~~g~~~~f~~~~~~~l~~~~~  393 (408)
T PRK09874        341 SNQIAGRIFSYNQSFRDIGN-------VTGPLMGAAIS------------ANYGFRAVFLVTAGVVLFNAVY  393 (408)
T ss_pred             CcccceeeehHHHHHHHHHH-------HhhHHHHHHHH------------hhcchhHHHHHHHHHHHHHHHH
Confidence            77789999999888889999       88888877663            2368999999887776665444

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=89.29  E-value=0.72  Score=39.44  Aligned_cols=45  Identities=9%  Similarity=0.131  Sum_probs=32.6

Q ss_pred             CchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHH
Q psy12745         10 DTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSL   73 (175)
Q Consensus        10 ~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~   73 (175)
                      +|+...++...+.++|.       .+++.++..+..            ..+||+.|.+..+..+
T Consensus       147 ~~~~~~~~~~~~~~iG~-------~~gp~i~g~l~~------------~~g~~~~F~i~~i~~~  191 (500)
T PRK09584        147 RLDGAFTMYYMSINIGS-------FFSMLATPWLAA------------KYGWSVAFALSVVGML  191 (500)
T ss_pred             hhhhcchHHHHHHHHHH-------HHHHHHHHHHHH------------hhCHHHHHHHHHHHHH
Confidence            34456667788899999       888887766632            3589999998875433

>TIGR01272 gluP glucose/galactose transporter

Probab=89.08  E-value=1.1  Score=35.79  Aligned_cols=72  Identities=6%  Similarity=-0.165  Sum_probs=44.1

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcc---cc-cccccchHHHHHHhhHHHHHHHHH--Hh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPV---FD-FFLMCSWRIFLIVSTFPSLAGALL--VF   80 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~---~~-~~~~~~Wr~~~~~~~i~~~~~~~~--~~   80 (175)
                      |++++.+..++.+.++.+|.       +++++++-.+.........   .. ......||+++++.+...++..+.  +.
T Consensus        40 ~~~~~~~~l~~~~~~~~~G~-------~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~  112 (310)
T TIGR01272        40 PIETAASRLALTQAFNKLGT-------TVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFL  112 (310)
T ss_pred             CcchHHHHHHHHHHHhhhHH-------HHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            66689999999999999999       9999998877532210000   00 001258999988554433333222  33


Q ss_pred             hcCCC
Q psy12745         81 FIPES   85 (175)
Q Consensus        81 ~lpES   85 (175)
                      -+||.
T Consensus       113 ~~p~~  117 (310)
T TIGR01272       113 PLPEL  117 (310)
T ss_pred             cCCCC
Confidence            35664

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>KOG2615|consensus

Probab=88.91  E-value=0.38  Score=40.07  Aligned_cols=70  Identities=9%  Similarity=0.197  Sum_probs=43.7

Q ss_pred             cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH-HHHHHh
Q psy12745          2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA-GALLVF   80 (175)
Q Consensus         2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~-~~~~~~   80 (175)
                      +|+.+| +.|+..++...+.+.+|.       ++|+.++..+....   ...+   ..-.-.|-++..+.+.. .....+
T Consensus       146 sdV~se-k~r~l~ms~v~~a~~lGf-------ilGPmIGgyla~f~---~~~g---~~p~alP~~~v~i~a~~~v~~~~~  211 (451)
T KOG2615|consen  146 SDVVSE-KYRPLGMSLVGTAFGLGF-------ILGPMIGGYLAQFS---SISG---SYPFALPCLLVFILAAGDVTFFPW  211 (451)
T ss_pred             HhhcCh-hhccceeeeeehhhhcch-------hhcchhhhHHHhhH---hhhc---cCchHHHHHHHHHHHHHHHHHHHH
Confidence            456644 699999999999999999       99998877763310   0111   11122223333344444 455677


Q ss_pred             hcCCC
Q psy12745         81 FIPES   85 (175)
Q Consensus        81 ~lpES   85 (175)
                      ++||+
T Consensus       212 ~lpET  216 (451)
T KOG2615|consen  212 FLPET  216 (451)
T ss_pred             hCCcc
Confidence            89999

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=88.68  E-value=1  Score=38.56  Aligned_cols=76  Identities=9%  Similarity=0.057  Sum_probs=47.8

Q ss_pred             cccccCCCCc-hhhHHHhHHHHhhcCCccchhHHHHHHHHHHHh-----ccccCCcccccccccchHHHHHHhhHHHHHH
Q psy12745          2 TDISETKRDT-KKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFII-----PIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG   75 (175)
Q Consensus         2 ~~is~p~~~R-g~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~-----~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~   75 (175)
                      +|+..|+++| +...++.+.+.++|.       +++++++....     +.....+. + ....+-|..|++.++..++.
T Consensus       140 aDl~p~~~~~~~~a~~~~~~~~~lG~-------ilg~~~g~~~~~~~~~~~~~~~~~-~-~~~~~~~~~F~i~a~~l~i~  210 (477)
T TIGR01301       140 ADLTGGDARRTRIANAYFSFFMAIGN-------VLGYAAGAYSGLYKIFPFTKTEAC-G-VSCANLKSCFLIDIILLAIL  210 (477)
T ss_pred             ccccCchhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHhccccccccc-c-cccchHHHHHHHHHHHHHHH
Confidence            4566444333 678888899999999       98888876541     11100000 0 01137899999988866664


Q ss_pred             -HHHHhhcCCCh
Q psy12745         76 -ALLVFFIPESP   86 (175)
Q Consensus        76 -~~~~~~lpESP   86 (175)
                       .+..++.+|.|
T Consensus       211 ~l~t~~~v~E~~  222 (477)
T TIGR01301       211 TYIALSAVKENP  222 (477)
T ss_pred             HHHHeeeeeccC
Confidence             44466688976

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=88.38  E-value=0.14  Score=44.37  Aligned_cols=34  Identities=15%  Similarity=0.095  Sum_probs=0.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccc
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIK   47 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~   47 (175)
                      ++++-+.+.++......+|.       .+|.+++..+...+
T Consensus       171 ~~~~splYiGi~~~~~~lGP-------a~Gf~lg~~~L~~y  204 (539)
T PF03137_consen  171 SKKNSPLYIGILYAMSILGP-------ALGFLLGSFCLRIY  204 (539)
T ss_dssp             -----------------------------------------
T ss_pred             ccccCccchhhhhHHhhccH-------HHHHHHHHHHHhce
Confidence            67788999999999999999       88888877776543

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00898 2A0119 cation transport protein

Probab=88.34  E-value=0.68  Score=39.11  Aligned_cols=59  Identities=12%  Similarity=0.023  Sum_probs=44.2

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |.+.|+...++.+....+|.       ++++.+.. +             ...++..++.+.++.+++..+...++||+.
T Consensus       440 p~~~r~~~~g~~~~~~~ig~-------~i~p~i~~-~-------------~~~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       440 PTVVRNLGVGVCSTMARVGS-------IISPFLVY-L-------------GEKWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             cHHHHhhhHhHHHHHHHHHH-------HHHhHHHH-H-------------HHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            88899999999999888988       88887766 3             123566677776666666666667889863

>TIGR00896 CynX cyanate transporter

Probab=87.57  E-value=1.2  Score=35.73  Aligned_cols=49  Identities=8%  Similarity=0.003  Sum_probs=34.9

Q ss_pred             CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHH
Q psy12745          8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSL   73 (175)
Q Consensus         8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~   73 (175)
                      +++|++..+..+...++|.       .+++.+...+....          ..+||..+.+.++..+
T Consensus       117 ~~~~~~~~~~~~~~~~~g~-------~i~~~~~~~l~~~~----------~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896       117 PQRVGLMTGLYSMALMGGA-------ALAAAATVPLAQHS----------GGHWQQALAWWALPAL  165 (355)
T ss_pred             cchhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHH
Confidence            3589999999999999998       88887766553221          1359998876655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG3626|consensus

Probab=87.49  E-value=1.7  Score=39.14  Aligned_cols=73  Identities=12%  Similarity=0.154  Sum_probs=47.7

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCC--c--ccccc-ccc--chHHHHHHhhHHHHHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTY--P--VFDFF-LMC--SWRIFLIVSTFPSLAGALLV   79 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~--~--~~~~~-~~~--~Wr~~~~~~~i~~~~~~~~~   79 (175)
                      .+++-..+.++....-.+|-       ++|.+++.++...+.+.  .  ..... ..|  .|..=|++.+...++..+..
T Consensus       267 k~~~SplYlgi~~~~~~lGP-------aiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~  339 (735)
T KOG3626|consen  267 KKKNSPLYLGILYSMAILGP-------AIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL  339 (735)
T ss_pred             cccCCcHHHHHHHHHHHhhh-------HHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence            45577889999999999999       88888888877765433  1  11111 112  46666777766666666666


Q ss_pred             hhcCCCh
Q psy12745         80 FFIPESP   86 (175)
Q Consensus        80 ~~lpESP   86 (175)
                      +++|...
T Consensus       340 f~fPk~l  346 (735)
T KOG3626|consen  340 FFFPKEL  346 (735)
T ss_pred             HhCcccC
Confidence            6776553

>TIGR00897 2A0118 polyol permease family

Probab=87.34  E-value=2.1  Score=35.14  Aligned_cols=31  Identities=10%  Similarity=0.162  Sum_probs=23.2

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFI   43 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~   43 (175)
                      |+++||+..++.+...++|..      ++++.++-.+
T Consensus       135 ~~~~~g~~~g~~~~~~~~g~~------~~g~~~~~~l  165 (402)
T TIGR00897       135 KQDNLSSAVGWFWAVYSIGIG------VFGSYYSSYA  165 (402)
T ss_pred             CHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhc
Confidence            778999999999999888850      3566665444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK12382 putative transporter; Provisional

Probab=86.95  E-value=1.1  Score=36.53  Aligned_cols=53  Identities=4%  Similarity=-0.035  Sum_probs=41.4

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL   78 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~   78 (175)
                      |+++||...++.+....+|.       .+++.+.-.+..            ..+|+..+.+.++..++..+.
T Consensus       332 ~~~~~g~~~g~~~~~~~~g~-------~ig~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~  384 (392)
T PRK12382        332 PSQVRGTALGGYAAFQDIAY-------GVSGPLAGMLAT------------SFGYPSVFLAGAISAVLGIIV  384 (392)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhCchHHHHHHHHHHHHHHHH
Confidence            77899999999999999998       888877666532            358999999888776665443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=86.57  E-value=2.4  Score=34.76  Aligned_cols=50  Identities=12%  Similarity=0.156  Sum_probs=35.3

Q ss_pred             CCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH
Q psy12745          8 KRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG   75 (175)
Q Consensus         8 ~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~   75 (175)
                      +++|++..+....+.+.|.       .++..++..+....           .+||..+.+..++.++.
T Consensus       127 ~~~~~~~~g~~~~~~~~g~-------~~g~~~~~~l~~~~-----------~~w~~~~~~~~~~~~~~  176 (393)
T PRK09705        127 QQRTPLVMGLWSAALMGGG-------GLGAAITPWLVQHS-----------ETWYQTLAWWALPAVVA  176 (393)
T ss_pred             cccchhHHHHHHHHHHHHH-------HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHH
Confidence            3689999999998888888       88887766553221           38998876655554433

>TIGR00899 2A0120 sugar efflux transporter

Probab=86.47  E-value=1.9  Score=34.47  Aligned_cols=57  Identities=4%  Similarity=-0.031  Sum_probs=41.6

Q ss_pred             CCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCC
Q psy12745          9 RDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPE   84 (175)
Q Consensus         9 ~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpE   84 (175)
                      ++|+...++.+....+|.       .+++.++-.+..            ..+|+..+.+.++..++..+...+++|
T Consensus       319 ~~~~~~~~~~~~~~~~g~-------~~g~~~~g~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       319 GRAGAATTLYTNTGRVGW-------IIAGSVGGILAE------------RWSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             chhhHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------hccchhHHHHHHHHHHHHHHHHheecC
Confidence            356788888888888888       888877666532            258999999888877776666555544

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00893 2A0114 d-galactonate transporter

Probab=86.14  E-value=1.9  Score=34.17  Aligned_cols=53  Identities=17%  Similarity=-0.019  Sum_probs=40.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccc-hHHHHHHhhHHHHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCS-WRIFLIVSTFPSLAGALL   78 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~i~~~~~~~~   78 (175)
                      |++.||...++.+....+|.       .+++.+.-.+..            ..+ |+..+.+.++..++..+.
T Consensus       341 ~~~~~g~~~~~~~~~~~~g~-------~~~~~i~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~  394 (399)
T TIGR00893       341 PGNIAGLTGGLINSLGNLGG-------IVGPIVIGAIAA------------TTGSFAGALMVVAALALIGALS  394 (399)
T ss_pred             ChhHHHHHHHHHHHHHHHhh-------hhhhHHhhhhcc------------CCCchhHHHHHHHHHHHHHHHH
Confidence            78899999999999999999       888877666532            245 888888777766554433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=85.77  E-value=1.6  Score=37.09  Aligned_cols=71  Identities=11%  Similarity=0.009  Sum_probs=41.3

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |.+.|+...++.+....+|.       ++++.+.-.+.......  .|.....++...+++.++..++..+..+++||+.
T Consensus       422 p~~~R~~~~g~~~~~~~~~~-------~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       422 PTRYRSTAHGISAASGKAGA-------IIGQFGFLYLAQHGDPT--KGYPTGIWMGHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             chhHHHHHHHHHHHHhhhHH-------HHHHHHhhhhhcccccc--ccccccccchHHHHHHHHHHHHHHHHheEeccCC
Confidence            88899999999998888888       77765543332210000  0000013445555655555555544556789974

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=85.69  E-value=0.93  Score=35.97  Aligned_cols=49  Identities=12%  Similarity=0.023  Sum_probs=39.1

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA   74 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~   74 (175)
                      |+++||...++.+....+|.       .+++.+.-.+.            +..+|+..+.+.++..++
T Consensus       325 ~~~~~~~~~g~~~~~~~~g~-------~~~~~~~g~l~------------~~~g~~~~f~~~~~~~~~  373 (377)
T TIGR00890       325 GPANSAANYGFLYTAKAVAG-------IFGGLIASHAL------------TEIGFEYTFIVTGAFALT  373 (377)
T ss_pred             hhhhhhhHhHHHHHHHHHHH-------HHHHHHHHHHH------------hhhchhhHHHHHHHHHHH
Confidence            78899999999999999999       88887766552            236899998887765554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=85.59  E-value=1.6  Score=35.57  Aligned_cols=58  Identities=12%  Similarity=-0.052  Sum_probs=39.9

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhc
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFI   82 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~l   82 (175)
                      |++.||...++.+....+|.       .+++.+.-.+....           .+|...+.......++..+..+++
T Consensus       338 p~~~~g~~~g~~~~~~~~g~-------~~g~~~~g~l~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        338 PTQVRGTGVGAAVAVGRLGS-------MAGPLLAGQLLALG-----------RSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             chhhhhhhhhHHHHhhhHHH-------HHHhhhHhhhhccC-----------CchHHHHHHHHHHHHHHHHHHHHH
Confidence            78899999999999999998       88888866653321           356666666655555444443333

>TIGR00788 fbt folate/biopterin transporter

Probab=85.50  E-value=1.5  Score=37.17  Aligned_cols=46  Identities=9%  Similarity=0.034  Sum_probs=32.4

Q ss_pred             HhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745         22 WNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus        22 ~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      .++|.       ++++.++-.+..            ..+||..|++.++..++..+...++||.+
T Consensus       167 ~~~G~-------~vg~~l~G~l~~------------~~~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       167 SATGG-------LISSLLGGPLLD------------KTLTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             HHHHH-------HHHHHHHHHHHH------------hcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence            34677       888777766632            25899999888776666665667788863

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=85.46  E-value=1.8  Score=36.71  Aligned_cols=46  Identities=7%  Similarity=-0.050  Sum_probs=35.3

Q ss_pred             CchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH
Q psy12745         10 DTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA   74 (175)
Q Consensus        10 ~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~   74 (175)
                      +|+...++.....++|.       +++..++-.+..            ..+||+.|.+.++..++
T Consensus       138 ~r~~~~~~~~~~~niG~-------~ig~~l~g~l~~------------~~g~~~~f~~~~~~~~~  183 (475)
T TIGR00924       138 RRDGGFTLFYMSINIGS-------FISPLLAGVIAE------------NYGYHVGFNLAAVGMVI  183 (475)
T ss_pred             cccceehhHHHHHHHHH-------HHHHHHHHHHHH------------hcChHHHHHHHHHHHHH
Confidence            58888889999999999       988888766632            35899999887654443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09528 lacY galactoside permease; Reviewed

Probab=85.18  E-value=1.3  Score=36.44  Aligned_cols=51  Identities=10%  Similarity=-0.160  Sum_probs=33.5

Q ss_pred             CCCCchhhHHH-hHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH
Q psy12745          7 TKRDTKKIIYW-RRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA   76 (175)
Q Consensus         7 p~~~Rg~~~~~-~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~   76 (175)
                      |++.|+...+. .+....+|.       ++++.+.-.+.+            ..|||..+.+.++..++..
T Consensus       345 ~~~~~a~~~~~~~~~~~~lg~-------~ig~~~~G~l~~------------~~G~~~~f~~~~~~~~i~~  396 (420)
T PRK09528        345 DVRLSATIYLVGFQFAKQLGA-------VFLSTLAGNLYD------------SIGFQGTYLILGGIVLLFT  396 (420)
T ss_pred             CccceeeeeeehHHHHHHHHH-------HHHHHHHHHHHH------------hhCchHHHHHHHHHHHHHH
Confidence            67777765443 456667777       777777655532            3589999997766655543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=85.18  E-value=2.9  Score=35.04  Aligned_cols=70  Identities=11%  Similarity=0.028  Sum_probs=46.0

Q ss_pred             ccccc--CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHH
Q psy12745          2 TDISE--TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALL   78 (175)
Q Consensus         2 ~~is~--p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~   78 (175)
                      +.++.  ||+++|...++.. .-|+|.       .+..+++-.+....         ....||....+-.++.++. .+.
T Consensus       127 ~~~s~~fP~~~qG~AlGI~g-~GN~G~-------av~q~~~P~v~~~~---------g~~~w~~~~~i~~~~l~v~~v~~  189 (417)
T COG2223         127 PNASFFFPKEKQGLALGIAG-AGNLGV-------AVAQLVAPLVAVAF---------GFLAWRNVAGIYVVALAIAAVLA  189 (417)
T ss_pred             ccccccCChhhhhHHHHHhc-cccccH-------HHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHH
Confidence            45666  9999999999988 778888       66666665553321         0012888766665555553 444


Q ss_pred             HhhcCCChHH
Q psy12745         79 VFFIPESPKF   88 (175)
Q Consensus        79 ~~~lpESP~~   88 (175)
                      .+++.|.|..
T Consensus       190 ~~~~~d~p~~  199 (417)
T COG2223         190 WLGMNDVPEH  199 (417)
T ss_pred             HHHhCCChhh
Confidence            5567777754

>TIGR00897 2A0118 polyol permease family

Probab=84.36  E-value=2.7  Score=34.46  Aligned_cols=56  Identities=13%  Similarity=0.020  Sum_probs=42.4

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF   81 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~   81 (175)
                      ++++||...++.+....+|.       .+++.++-.+..            ..+|+..+.+.++..++..+...|
T Consensus       344 ~~~~~g~~~g~~~~~~~lg~-------~~gp~i~g~l~~------------~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       344 APKHKGAAMSVLNLSAGLSA-------FLAPAIAVLFIG------------FFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             CcchhHHHHHHHHHHHHHHH-------HHHHHHHHHHHh------------hcchHHHHHHHHHHHHHHHHHHHH
Confidence            34589999999999999999       888877766633            368999988887776665554444

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=84.01  E-value=1.9  Score=35.00  Aligned_cols=53  Identities=9%  Similarity=0.070  Sum_probs=37.7

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL   78 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~   78 (175)
                      |+++++...+.....+++|.       ++++.++-.+.+            ..+|+..|.+.+...++..+.
T Consensus       315 ~~~~~~~~~~~~~~~~~lG~-------~igp~~~G~l~~------------~~g~~~~f~~~~~~~l~~~~~  367 (381)
T PRK03633        315 EHHELVAMNQALLLSYTVGS-------LLGPSFTAMLMQ------------NYSDNLLFIMIASVSFIYLLM  367 (381)
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhCccHHHHHHHHHHHHHHHH
Confidence            55566666677677888998       888888777643            358888888877766655444

>PRK11462 putative transporter; Provisional

Probab=82.70  E-value=3  Score=35.18  Aligned_cols=72  Identities=11%  Similarity=0.007  Sum_probs=46.1

Q ss_pred             cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHH-HHHh
Q psy12745          2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGA-LLVF   80 (175)
Q Consensus         2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~-~~~~   80 (175)
                      +|++..+++|..+.++.+.+.++|.       ++++++...+....     .+.....+|+....+.++++++.. +...
T Consensus       135 ~~lt~d~~eRt~l~s~r~~~~~iG~-------~~~~~~~~plv~~~-----g~~~~~~g~~~~~~i~~ii~~i~~~i~~~  202 (460)
T PRK11462        135 GVITNDPTQRISLQSWRFVLATAGG-------MLSTVLMMPLVNLI-----GGDNKPLGFQGGIAVLSVVAFMMLAFCFF  202 (460)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHh-----CCCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence            5778778899999999999999988       77766654443221     010122478887777666655544 3333


Q ss_pred             hcCCC
Q psy12745         81 FIPES   85 (175)
Q Consensus        81 ~lpES   85 (175)
                      ..+|.
T Consensus       203 ~~kE~  207 (460)
T PRK11462        203 TTKER  207 (460)
T ss_pred             cceec
Confidence            35554

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=81.84  E-value=2.4  Score=34.58  Aligned_cols=53  Identities=19%  Similarity=0.063  Sum_probs=33.1

Q ss_pred             hHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhh-cCCCh
Q psy12745         14 IIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFF-IPESP   86 (175)
Q Consensus        14 ~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~-lpESP   86 (175)
                      ..+......++|.       .+++.++..+.             +.+||.+|.+.++.+++..+..++ .||+|
T Consensus       134 ~~g~~~~~~~~g~-------~~g~~~~g~l~-------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  187 (396)
T TIGR00882       134 EYGKARMFGCVGW-------ALCASIAGILF-------------SIDPQIVFWLGSGFALILMLLLMFAKPKAP  187 (396)
T ss_pred             ccchhhhhcccHH-------HHHHHHHhhhh-------------ccCchHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            3344455556666       77777765541             258999999887777765444333 56655

>PRK10489 enterobactin exporter EntS; Provisional

Probab=81.47  E-value=2.3  Score=34.98  Aligned_cols=61  Identities=16%  Similarity=0.017  Sum_probs=41.8

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHH-HHHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLA-GALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~-~~~~~~~lpES   85 (175)
                      |++.||...++......+|.       .+++.+.-.+..            ..+++..+...+...++ ..+.....||.
T Consensus       342 p~~~~g~~~g~~~~~~~~g~-------~~g~~l~G~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (417)
T PRK10489        342 PDEMLGRINGLWTAQNVTGD-------AIGAALLGGLGA------------MMTPVASASASGFGLLIIGVLLLLVLGEL  402 (417)
T ss_pred             CHHHHHHHHHHHHHHHhhhH-------hHHHHHHHHHHH------------HhchhhHHHHHHHHHHHHHHHHHHhcccc
Confidence            78889999999998888888       888877666632            24777777655554444 34444455654


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      .
T Consensus       403 ~  403 (417)
T PRK10489        403 R  403 (417)
T ss_pred             c
Confidence            3

>PRK09669 putative symporter YagG; Provisional

Probab=80.68  E-value=3.3  Score=34.51  Aligned_cols=71  Identities=15%  Similarity=0.083  Sum_probs=44.1

Q ss_pred             cccccCCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-Hh
Q psy12745          2 TDISETKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VF   80 (175)
Q Consensus         2 ~~is~p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~   80 (175)
                      +|++.++++|+.+.++...+.++|.       ++++++...+......    + ....+|+..+.+.++.+++..+. .+
T Consensus       135 ~~~t~~~~eR~~l~~~r~~~~~~G~-------~i~~~~~~pl~~~~~~----~-~~~~g~~~~~~i~~ii~~v~~~~~~~  202 (444)
T PRK09669        135 GAITNDPRERHSLQSWRFALSFIGG-------LIVSVIALPLVDILGK----G-DEQKGYFYAMMVMGLLGVVLFFCCFF  202 (444)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhCC----C-chhhhHHHHHHHHHHHHHHHHHHHhC
Confidence            4677666789999999998888888       7776654433221100    0 12358998888777666554433 33


Q ss_pred             hcCC
Q psy12745         81 FIPE   84 (175)
Q Consensus        81 ~lpE   84 (175)
                      ..+|
T Consensus       203 ~~~e  206 (444)
T PRK09669        203 MTKE  206 (444)
T ss_pred             CeEE
Confidence            3444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.47
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	96.98
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.84
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.84
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	95.13
2xut_A	524	Proton/peptide symporter family protein; transport	92.14
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	91.77
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	88.6
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	87.52

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.47  E-value=6e-15  Score=121.69  Aligned_cols=143  Identities=15%  Similarity=0.201  Sum_probs=101.1

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHHhhcCCCh
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLVFFIPESP   86 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~lpESP   86 (175)
                      |+++||+..++.+.++.+|.       +++.++++..........    .+.+.||+++.+..+++++.++.++++||||
T Consensus       156 p~~~rg~~~~~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp  224 (491)
T 4gc0_A          156 PAHIRGKLVSFNQFAIIFGQ-------LLVYCVNYFIARSGDASW----LNTDGWRYMFASECIPALLFLMLLYTVPESP  224 (491)
T ss_dssp             CGGGHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTTSCTTT----TTTTHHHHHHHTTHHHHHHHHHHGGGSCCCH
T ss_pred             CHHhhhhhHHhhhhhhhhhh-------hhhhhcchhhcccccccc----ccchhhHHHhhhhhhhhhhhhhhhhcCCCCh
Confidence            88899999999999999999       999999888754331111    2347899999999999999999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHhhccCCCCCCcccc----------cccccCCchhHHHHHHHHhcceeecceeEeechhhHH
Q psy12745         87 KFLMTHGRSDDALDVFQSMYARNTGKPKDSYPV----------KSLMGAPPTSICALLMLFGLKELTVEERVITRPTSIQ  156 (175)
Q Consensus        87 ~~L~~~g~~~~a~~~l~~l~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~  156 (175)
                      |||..|++.|++++.+++...++..+.+.....          ....................+++.+.+.+.+|.+.++
T Consensus       225 ~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (491)
T 4gc0_A          225 RWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVF  304 (491)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcchHHH
Confidence            999999999999999998866542211110000          0000111112222222333477788888888888888


Q ss_pred             hhhc
Q psy12745        157 EIEE  160 (175)
Q Consensus       157 ~~~~  160 (175)
                      +..+
T Consensus       305 ~~~~  308 (491)
T 4gc0_A          305 KTLG  308 (491)
T ss_dssp             HHSS
T ss_pred             HhcC
Confidence            7766

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=96.98  E-value=0.001  Score=53.22  Aligned_cols=74  Identities=12%  Similarity=-0.029  Sum_probs=46.6

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHh-ccccCCc-----------ccc--cccccchHHHHHHhhHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFII-PIKWTYP-----------VFD--FFLMCSWRIFLIVSTFPS   72 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~-~~~~~~~-----------~~~--~~~~~~Wr~~~~~~~i~~   72 (175)
                      |+++|++..++.+....+|.       ++++.++..+. .......           ..+  .....+||+++++.+++.
T Consensus       147 ~~~~r~~~~~~~~~~~~~g~-------~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  219 (438)
T 3o7q_A          147 PESSGHFRLNLAQTFNSFGA-------IIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIV  219 (438)
T ss_dssp             CSTTHHHHHHHHHHHHHHHH-------HHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHH
Confidence            78899999999999999999       99999887775 3210000           000  000011999997766655


Q ss_pred             HHHHHH--HhhcCCChH
Q psy12745         73 LAGALL--VFFIPESPK   87 (175)
Q Consensus        73 ~~~~~~--~~~lpESP~   87 (175)
                      ++..+.  ....||+++
T Consensus       220 ~~~~~~~~~~~~p~~~~  236 (438)
T 3o7q_A          220 LLVALLIMLTKFPALQS  236 (438)
T ss_dssp             HHHHHHHHHCCCCCCTT
T ss_pred             HHHHHHHHHHcCCcccc
Confidence            554333  333688764

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.84  E-value=0.0003  Score=56.50  Aligned_cols=64  Identities=9%  Similarity=0.158  Sum_probs=50.8

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccc-hHHHHHHhhHHHHHH-HHHHhhcCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCS-WRIFLIVSTFPSLAG-ALLVFFIPE   84 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~-Wr~~~~~~~i~~~~~-~~~~~~lpE   84 (175)
                      |+++|++..++.+....+|.       ++++.++..+..            ..+ ||+++++.+++.++. ++..+++||
T Consensus       149 ~~~~r~~~~~~~~~~~~~g~-------~~g~~~~~~l~~------------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~  209 (451)
T 1pw4_A          149 SQKERGGIVSVWNCAHNVGG-------GIPPLLFLLGMA------------WFNDWHAALYMPAFCAILVALFAFAMMRD  209 (451)
T ss_dssp             TTTHHHHHHHHHHHHHHHHH-------TSHHHHHHHHHH------------HTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred             CchhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HhccHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            77899999999999999999       888888765532            246 999999888877664 445677899


Q ss_pred             ChHHH
Q psy12745         85 SPKFL   89 (175)
Q Consensus        85 SP~~L   89 (175)
                      +|+..
T Consensus       210 ~~~~~  214 (451)
T 1pw4_A          210 TPQSC  214 (451)
T ss_dssp             SSTTT
T ss_pred             CHhhc
Confidence            99764

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.84  E-value=0.00023  Score=56.12  Aligned_cols=63  Identities=11%  Similarity=0.156  Sum_probs=51.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH-HHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL-LVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~-~~~~lpES   85 (175)
                      |+++|++..+..+....+|.       ++++.++..+..            ..+||..+.+.++..++..+ ..+++||+
T Consensus       118 ~~~~~~~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (375)
T 2gfp_A          118 ERTQLRHANSLLNMGILVSP-------LLAPLIGGLLDT------------MWNWRACYLFLLVLCAGVTFSMARWMPET  178 (375)
T ss_dssp             HTSSCCSHHHHHHHHHHHHH-------HHHHHHHHHSSC------------HHHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHH------------hccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence            67799999999999999999       999999887732            35899999988777766554 55678998


Q ss_pred             hHH
Q psy12745         86 PKF   88 (175)
Q Consensus        86 P~~   88 (175)
                      |+.
T Consensus       179 ~~~  181 (375)
T 2gfp_A          179 RPV  181 (375)
T ss_dssp             STT
T ss_pred             CCC
Confidence            754

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=95.13  E-value=0.029  Score=45.55  Aligned_cols=52  Identities=10%  Similarity=0.029  Sum_probs=39.5

Q ss_pred             CCCC--chhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHH
Q psy12745          7 TKRD--TKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGAL   77 (175)
Q Consensus         7 p~~~--Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~   77 (175)
                      |+++  |+...++.+...++|.       ++++.++..+..            ..+||++|.+.++..++..+
T Consensus       138 ~~~~~~r~~~~~~~~~~~~~g~-------~~~~~~~~~l~~------------~~g~~~~f~~~~~~~~~~~~  191 (491)
T 4aps_A          138 DEHDRRRDAGFSIFVFGINLGA-------FIAPLIVGAAQE------------AAGYHVAFSLAAIGMFIGLL  191 (491)
T ss_dssp             SSCTTHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------HSCHHHHHHHHHHHHHHHHH
T ss_pred             CcccccceeeehHHHHHHHHHH-------HHHHHHHHHHHh------------hhhHHHHHHHHHHHHHHHHH
Confidence            5666  7778888889999999       999888877643            36899999988766555433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=92.14  E-value=0.17  Score=41.33  Aligned_cols=53  Identities=2%  Similarity=-0.104  Sum_probs=39.2

Q ss_pred             CCCCchhhHHH---hHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH
Q psy12745          7 TKRDTKKIIYW---RRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL   78 (175)
Q Consensus         7 p~~~Rg~~~~~---~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~   78 (175)
                      |+++|+...+.   .+...++|.       ++++.++..+..            ..+||++|.+.++..++..+.
T Consensus       139 ~~~~r~~~~~~~~~~~~~~~~g~-------~~g~~~~~~l~~------------~~g~~~~f~~~~~~~~~~~~~  194 (524)
T 2xut_A          139 DQSNKSLAQKAFDMFYFTINFGS-------FFASLSMPLLLK------------NFGAAVAFGIPGVLMFVATVF  194 (524)
T ss_dssp             STTTTTHHHHHHHHHHHHHHHHH-------HHHHHTSTHHHH------------TSCHHHHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhc------------cccHHHHHHHHHHHHHHHHHH
Confidence            77788876666   788888888       888877666632            358999999887776654444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=91.77  E-value=0.089  Score=42.56  Aligned_cols=67  Identities=6%  Similarity=-0.149  Sum_probs=38.0

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES   85 (175)
                      |.+.|+...++......+|.       ++++.+.-.+....      ......++...+++.+..+++. ++..+++||+
T Consensus       400 Pt~~R~~~~g~~~~~~~~~~-------~i~~~~~p~l~~~~------~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          400 PNAIRGKALAIAVAAQWLAN-------YFVSWTFPMMDKNS------WLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             CTTTHHHHHHHHHHHHHHHH-------HHHHTHHHHHCHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             CHhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH------HHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            88999999998877777766       55544432221100      0001124445555555555554 4556789998


Q ss_pred             h
Q psy12745         86 P   86 (175)
Q Consensus        86 P   86 (175)
                      -
T Consensus       467 k  467 (491)
T 4gc0_A          467 K  467 (491)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=88.60  E-value=0.51  Score=38.04  Aligned_cols=59  Identities=8%  Similarity=-0.018  Sum_probs=37.6

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-HhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~lpES   85 (175)
                      |++.||...++.+....+|.       .+++.+.-.+             .+.++...+.+.++..++..+. ..+.++.
T Consensus       416 p~~~~g~~~g~~~~~~~~g~-------~i~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          416 PKAFNSQMMSMWFLSSSVGS-------ALNAQLVTLY-------------NAKSEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             TTTCSSSSTHHHHHHHHHHH-------HHHHHHGGGG-------------GGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH-------------hcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999       8887775544             1235555666665555554333 3334443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=87.52  E-value=0.55  Score=37.16  Aligned_cols=54  Identities=13%  Similarity=0.113  Sum_probs=41.7

Q ss_pred             CCCCchhhHHHhHHHHhh-cCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHHH
Q psy12745          7 TKRDTKKIIYWRRVDWNR-SHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALLV   79 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~-G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~   79 (175)
                      |++.||...++.+....+ |.       .+++.+...+..            ..+|+..+++.++..++..+..
T Consensus       376 ~~~~~g~~~~~~~~~~~~~g~-------~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~  430 (451)
T 1pw4_A          376 PKKAAGTAAGFTGLFGYLGGS-------VAASAIVGYTVD------------FFGWDGGFMVMIGGSILAVILL  430 (451)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------SSCSHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHH------------hcCcHHHHHHHHHHHHHHHHHH
Confidence            788899999999999998 99       888877666532            3589999888877666654443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.65
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	93.02

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00017  Score=55.65  Aligned_cols=64  Identities=9%  Similarity=0.162  Sum_probs=47.7

Q ss_pred             CCCCchhhHHHhHHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHH-HHHHhhcCCC
Q psy12745          7 TKRDTKKIIYWRRVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAG-ALLVFFIPES   85 (175)
Q Consensus         7 p~~~Rg~~~~~~~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~-~~~~~~lpES   85 (175)
                      |+++|++..++.+.++.+|.       ++++.++......           ..+||+.+++.+++.++. ++...+++|+
T Consensus       146 ~~~~r~~~~~~~~~~~~~g~-------~i~~~~~~~~~~~-----------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~  207 (447)
T d1pw4a_         146 SQKERGGIVSVWNCAHNVGG-------GIPPLLFLLGMAW-----------FNDWHAALYMPAFCAILVALFAFAMMRDT  207 (447)
T ss_dssp             TTTHHHHHHHHHHHHHHHHH-------TSHHHHHHHHHHH-----------TCCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred             Hhhcccccccccccccchhh-------hhhhhhhhhHhhh-----------hhcccccchhhhhhHHHHHHHHHHhcccc
Confidence            78899999999999999998       7777666554332           258999888887776664 4456667787


Q ss_pred             hHH
Q psy12745         86 PKF   88 (175)
Q Consensus        86 P~~   88 (175)
                      |+.
T Consensus       208 ~~~  210 (447)
T d1pw4a_         208 PQS  210 (447)
T ss_dssp             STT
T ss_pred             hhh
Confidence            754

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=93.02  E-value=0.026  Score=41.60  Aligned_cols=57  Identities=16%  Similarity=-0.002  Sum_probs=39.1

Q ss_pred             CCCCchhhHHHh-HHHHhhcCCccchhHHHHHHHHHHHhccccCCcccccccccchHHHHHHhhHHHHHHHHH-Hhhc
Q psy12745          7 TKRDTKKIIYWR-RVDWNRSHAFSHTPFVKGLVIAYFIIPIKWTYPVFDFFLMCSWRIFLIVSTFPSLAGALL-VFFI   82 (175)
Q Consensus         7 p~~~Rg~~~~~~-~~~~~~G~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~l   82 (175)
                      |++.||...+.. ++...+|.       .+++.++-.+.            +..+|+..+++.++..++..+. .+.+
T Consensus       342 ~~~~~~~~~~~~~~~~~~~g~-------~i~~~~~G~l~------------~~~g~~~~~~~~~~~~~~~~~~~~~~l  400 (417)
T d1pv7a_         342 EVRFSATIYLVCFCFFKQLAM-------IFMSVLAGNMY------------ESIGFQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             CGGGHHHHHHHHHTTTHHHHH-------HHHHHHHHHHH------------HHHCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH------------HHHCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            788999988864 56677888       88877765553            2358999888777766654433 3344