Psyllid ID: psy12782

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200---
Protein Sequence
MTNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTATN
Secondary Structure (PSIPRED)
cccccccccEEEEEccEEccccccccccEEEEEEEEEEccccccccccccccEEEEEEccccccccccccccccccccccccccEEEEEcccccccccccccccEEEEEEEccHHHHHHHHHcccccccccccEEEEccccccccccccccccEEEEEEccEEEEEEEEEEcccccccccccEEEEccccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcEEccccccccccEEEEEEEEEEccccccccccccccEEEEEEccccEEcccEcEEEcccccccccccEEEEEEcccccccccccccEcEEEEEEEEcHHHHHcccccccccccccccEEEEcccccccEccccccccEEEEEEccEEEEEEEEEEccccccccccEEEEEHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MTNTASARQVQVTLGDYvinsaveplpaytfgvrkinvhpyfkftpqadrydvavlrldrpvqymphiapiclpekgedflgqfgwaagwgalqagsrlrpktlqavdvpiidnrqcerwhksngINVVIYDEMmcagyrggakdscqgdsggplmmerTGRWFLIGIVSAGyscaqqgqpgiyhrVAYTVDWISYIMNTATN
Flexible Loop (DISEMBL)
mtntasarqvQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVpiidnrqcerwhksNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTATN
Low Complexity Region (SEG)
MTNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDflgqfgwaagwgalqagSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTATN
Disordered region (IsUnstruct)
*********VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSC*****GPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN****
Disordered Region (DISOPRED)
*****SARQVQVTLGDYVINSAV*P*PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI**IM*****
Disordered Region (DISEMBL)
*********VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTATN
Disordered Region (DISPRO)
*****SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTATN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	203	2.2.26 [Sep-21-2011]
Q05319	787	Serine proteinase stubble	no	N/A	0.901	0.232	0.406	1e-35
P03951	625	Coagulation factor XI OS=	yes	N/A	0.773	0.251	0.393	3e-31
Q9DBI0	811	Transmembrane protease se	yes	N/A	0.798	0.199	0.412	7e-30
P14272	638	Plasma kallikrein OS=Ratt	yes	N/A	0.763	0.242	0.361	1e-29
P69525	1065	Transmembrane protease se	no	N/A	0.926	0.176	0.373	1e-29
P03952	638	Plasma kallikrein OS=Homo	no	N/A	0.763	0.242	0.368	3e-29
P69526	1061	Transmembrane protease se	no	N/A	0.926	0.177	0.373	4e-29
P26262	638	Plasma kallikrein OS=Mus	no	N/A	0.763	0.242	0.355	4e-29
Q5NTB3	625	Coagulation factor XI OS=	no	N/A	0.773	0.251	0.381	4e-29
P97435	1069	Enteropeptidase OS=Mus mu	no	N/A	0.783	0.148	0.388	1e-28

>sp|Q05319|STUB_DROME Serine proteinase stubble OS=Drosophila melanogaster GN=Sb PE=2 SV=2

 Score =  149 bits (377), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/187 (40%), Positives = 107/187 (57%), Gaps = 4/187 (2%)

Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHI 68
           Q+++ +G+Y  +   E LP    GV K  VHP + F      YD+A+++L++P+++ PH+
Sbjct: 599 QIRIRVGEYDFSHVQEQLPYIERGVAKKVVHPKYSFL--TYEYDLALVKLEQPLEFAPHV 656

Query: 69  APICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
           +PICLPE     +G      GWG L  G  L P  LQ V VPI+ N  C+      G   
Sbjct: 657 SPICLPETDSLLIGMNATVTGWGRLSEGGTL-PSVLQEVSVPIVSNDNCKSMFMRAGRQE 715

Query: 129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMME-RTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
            I D  +CAGY  G +DSCQGDSGGPL  + + GR+FL GI+S G  CA+   PG+  R+
Sbjct: 716 FIPDIFLCAGYETGGQDSCQGDSGGPLQAKSQDGRFFLAGIISWGIGCAEANLPGVCTRI 775

Query: 188 AYTVDWI 194
           +    WI
Sbjct: 776 SKFTPWI 782

Hormone dependent protease required for epithelial morphogenesis, including the formation of bristles, legs, and wings. Has a dual function, detaches imaginal disk cells from extracellular matrices through its extracellular proteolytic domain and transmits an outside-to-inside signal to its intracellular domain to modify the cytoskeleton during morphogenesis.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|P03951|FA11_HUMAN Coagulation factor XI OS=Homo sapiens GN=F11 PE=1 SV=1

 Score =  134 bits (338), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/165 (39%), Positives = 98/165 (59%), Gaps = 8/165 (4%)

Query: 31  FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE-DFLGQFGWAAG 89
           FGV++I +H  +K       YD+A+L+L+  V Y     PICLP KG+ + +    W  G
Sbjct: 461 FGVQEIIIHDQYKMAESG--YDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTG 518

Query: 90  WGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQG 149
           WG  +   +++  TLQ   +P++ N +C++ ++ + I      +M+CAGYR G KD+C+G
Sbjct: 519 WGYRKLRDKIQ-NTLQKAKIPLVTNEECQKRYRGHKIT----HKMICAGYREGGKDACKG 573

Query: 150 DSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           DSGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct: 574 DSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 618

Factor XI triggers the middle phase of the intrinsic pathway of blood coagulation by activating factor IX.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 2

EC: 7

>sp|Q9DBI0|TMPS6_MOUSE Transmembrane protease serine 6 OS=Mus musculus GN=Tmprss6 PE=1 SV=4

 Score =  130 bits (326), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 71/172 (41%), Positives = 98/172 (56%), Gaps = 10/172 (5%)

Query: 30  TFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFL-GQFGWAA 88
           +F V ++ +HPY +    +  YDVA+L+LD PV Y   + P+CLP +   F  GQ  W  
Sbjct: 648 SFKVSRLFLHPYHE--EDSHDYDVALLQLDHPVVYSATVRPVCLPARSHFFEPGQHCWIT 705

Query: 89  GWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
           GWGA + G  +   TLQ VDV ++    C     S      +   M+CAGYR G KD+CQ
Sbjct: 706 GWGAQREGGPVS-NTLQKVDVQLVPQDLC-----SEAYRYQVSPRMLCAGYRKGKKDACQ 759

Query: 149 GDSGGPLMM-ERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           GDSGGPL+  E +GRWFL G+VS G  C +    G+Y RV   ++WI  ++ 
Sbjct: 760 GDSGGPLVCREPSGRWFLAGLVSWGLGCGRPNFFGVYTRVTRVINWIQQVLT 811

Serine protease which hydrolyzes a range of proteins including type I collagen, fibronectin and fibrinogen. Can also activate urokinase-type plasminogen activator with low efficiency (By similarity). May play a specialized role in matrix remodeling processes in liver. Required to sense iron deficiency. Overexpression suppresses activation of the HAMP promoter.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P14272|KLKB1_RAT Plasma kallikrein OS=Rattus norvegicus GN=Klkb1 PE=1 SV=1

 Score =  129 bits (325), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 100/163 (61%), Gaps = 8/163 (4%)

Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE-DFLGQFGWAAGWG 91
           ++++ +H  +K +  +  YD+A+++L  P+ Y     PICLP K + + +    W  GWG
Sbjct: 466 IKELIIHQKYKMSEGS--YDIALIKLQTPLNYTEFQKPICLPSKADTNTIYTNCWVTGWG 523

Query: 92  ALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDS 151
             +     +   LQ   +P++ N +C++ ++    + VI  +M+CAGY+ G  D+C+GDS
Sbjct: 524 YTKERGETQ-NILQKATIPLVPNEECQKKYR----DYVITKQMICAGYKEGGIDACKGDS 578

Query: 152 GGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GGPL+ + +GRW L+GI S G  CA++ QPG+Y +VA  +DWI
Sbjct: 579 GGPLVCKHSGRWQLVGITSWGEGCARKEQPGVYTKVAEYIDWI 621

The enzyme cleaves Lys-Arg and Arg-Ser bonds. It activates, in a reciprocal reaction, factor XII after its binding to a negatively charged surface. It also releases bradykinin from HMW kininogen and may also play a role in the renin-angiotensin system by converting prorenin into renin.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 3

EC: 4

>sp|P69525|TMPS9_MOUSE Transmembrane protease serine 9 OS=Mus musculus GN=Tmprss9 PE=2 SV=1

 Score =  129 bits (324), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 110/201 (54%), Gaps = 13/201 (6%)

Query: 3   NTASARQVQVTLGDY-VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
           N     QVQ  LG   ++     P+     G+R++ +HP  ++ P    +DVA+L L +P
Sbjct: 549 NHTKVEQVQAHLGTVSLLGVGGSPV---KLGLRRVALHP--RYNPGILDFDVALLELAQP 603

Query: 62  VQYMPHIAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
           + +  +I P+CLP     F +G+    +GWG +Q G+  +P  LQ   V II+ + C   
Sbjct: 604 LVFNKYIQPVCLPLAIHKFPVGRKCMISGWGNMQEGNATKPDILQKASVGIIEQKMCGAL 663

Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT-GRWFLIGIVSAGYSCAQQG 179
           +     N  + D M+CAG+  G  DSCQGDSGGPL  E T G ++L GIVS G  CAQ  
Sbjct: 664 Y-----NFSLTDRMLCAGFLEGRVDSCQGDSGGPLACEETPGVFYLAGIVSWGIGCAQAK 718

Query: 180 QPGIYHRVAYTVDWISYIMNT 200
           +PG+Y R+    DWI   M++
Sbjct: 719 KPGVYARITRLKDWILKAMSS 739

Serase-1 and serase-2 are serine proteases that hydrolyze the peptides N-t-Boc-Gln-Ala-Arg-AMC and N-t-Boc-Gln-Gly-Arg-AMC. In contrast, N-t-Boc-Ala-Phe-Lys-AMC and N-t-Boc-Ala-Pro-Ala-AMC are not significantly hydrolyzed.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P03952|KLKB1_HUMAN Plasma kallikrein OS=Homo sapiens GN=KLKB1 PE=1 SV=1

 Score =  128 bits (321), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 99/163 (60%), Gaps = 8/163 (4%)

Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE-DFLGQFGWAAGWG 91
           +++I +H  +K +     +D+A+++L  P+ Y     PICLP KG+   +    W  GWG
Sbjct: 466 IKEIIIHQNYKVS--EGNHDIALIKLQAPLNYTEFQKPICLPSKGDTSTIYTNCWVTGWG 523

Query: 92  ALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDS 151
             +    ++   LQ V++P++ N +C++ ++    +  I   M+CAGY+ G KD+C+GDS
Sbjct: 524 FSKEKGEIQ-NILQKVNIPLVTNEECQKRYQ----DYKITQRMVCAGYKEGGKDACKGDS 578

Query: 152 GGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GGPL+ +  G W L+GI S G  CA++ QPG+Y +VA  +DWI
Sbjct: 579 GGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWI 621

The enzyme cleaves Lys-Arg and Arg-Ser bonds. It activates, in a reciprocal reaction, factor XII after its binding to a negatively charged surface. It also releases bradykinin from HMW kininogen and may also play a role in the renin-angiotensin system by converting prorenin into renin.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 3

EC: 4

>sp|P69526|TMPS9_RAT Transmembrane protease serine 9 OS=Rattus norvegicus GN=Tmprss9 PE=3 SV=1

 Score =  127 bits (320), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/201 (37%), Positives = 109/201 (54%), Gaps = 13/201 (6%)

Query: 3   NTASARQVQVTLGDY-VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
           N     QVQ  LG   ++     P+     G+R + +HP  ++ P    +DVA+L L +P
Sbjct: 549 NHTKLEQVQAHLGTVSLLGVGGSPV---KLGLRSVALHP--RYNPGILDFDVALLELAQP 603

Query: 62  VQYMPHIAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
           + +  +I P+CLP     F +G+    +GWG +Q G+  +P  LQ   V II+ + C   
Sbjct: 604 LVFNKYIQPVCLPLAIHKFPVGRKCMISGWGNMQEGNATKPDILQKASVGIIEQKMCGAL 663

Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT-GRWFLIGIVSAGYSCAQQG 179
           +     N  + D M+CAG+  G  DSCQGDSGGPL  E T G ++L GIVS G  CAQ  
Sbjct: 664 Y-----NFSLTDRMLCAGFLEGRVDSCQGDSGGPLACEETPGVFYLAGIVSWGIGCAQAK 718

Query: 180 QPGIYHRVAYTVDWISYIMNT 200
           +PG+Y R+    DWI   M++
Sbjct: 719 KPGVYARITRLKDWILKAMSS 739

Serase-1 and serase-2 are serine proteases that hydrolyze the peptides N-t-Boc-Gln-Ala-Arg-AMC and N-t-Boc-Gln-Gly-Arg-AMC. In contrast, N-t-Boc-Ala-Phe-Lys-AMC and N-t-Boc-Ala-Pro-Ala-AMC are not significantly hydrolyzed.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P26262|KLKB1_MOUSE Plasma kallikrein OS=Mus musculus GN=Klkb1 PE=1 SV=2

 Score =  127 bits (320), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/163 (35%), Positives = 99/163 (60%), Gaps = 8/163 (4%)

Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE-DFLGQFGWAAGWG 91
           ++++ +H  +K +     YD+A+++L  P+ Y     PICLP K + + +    W  GWG
Sbjct: 466 IKELIIHQEYKVS--EGNYDIALIKLQTPLNYTEFQKPICLPSKADTNTIYTNCWVTGWG 523

Query: 92  ALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDS 151
             +     +   LQ   +P++ N +C++ ++    + VI  +M+CAGY+ G  D+C+GDS
Sbjct: 524 YTKEQGETQ-NILQKATIPLVPNEECQKKYR----DYVINKQMICAGYKEGGTDACKGDS 578

Query: 152 GGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GGPL+ + +GRW L+GI S G  CA++ QPG+Y +V+  +DWI
Sbjct: 579 GGPLVCKHSGRWQLVGITSWGEGCARKDQPGVYTKVSEYMDWI 621

The enzyme cleaves Lys-Arg and Arg-Ser bonds. It activates, in a reciprocal reaction, factor XII after its binding to a negatively charged surface. It also releases bradykinin from HMW kininogen and may also play a role in the renin-angiotensin system by converting prorenin into renin.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q5NTB3|FA11_BOVIN Coagulation factor XI OS=Bos taurus GN=F11 PE=1 SV=1

 Score =  127 bits (320), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 96/165 (58%), Gaps = 8/165 (4%)

Query: 31  FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE-DFLGQFGWAAG 89
           FGV++I +H  ++       YD+A+L+L+  + Y     PICLP KG+ + +    W  G
Sbjct: 461 FGVQEIIIHDQYEKAESG--YDIALLKLETAMNYTDSQWPICLPSKGDRNVMYTECWVTG 518

Query: 90  WGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQG 149
           WG  +   +++  TLQ   VP++ N +C+  ++ + I      +M+CAGYR G KD+C+G
Sbjct: 519 WGYRKLRDKIQ-NTLQKAKVPLMTNEECQAGYREHRIT----SKMVCAGYREGGKDACKG 573

Query: 150 DSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           DSGGPL  +    W L+GI S G  C Q+ +PG+Y  V   VDWI
Sbjct: 574 DSGGPLSCKHNEVWHLVGITSWGEGCGQRERPGVYSNVVEYVDWI 618

Factor XI triggers the middle phase of the intrinsic pathway of blood coagulation by activating factor IX.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 2

EC: 7

>sp|P97435|ENTK_MOUSE Enteropeptidase OS=Mus musculus GN=Tmprss15 PE=2 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 100/170 (58%), Gaps = 11/170 (6%)

Query: 33   VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWG 91
            V +I ++P++    + +  D+A++ L+  V Y  +I PICLPE+ + F+ G+    AGWG
Sbjct: 908  VDQIVINPHYDRRRKVN--DIAMMHLEFKVNYTDYIQPICLPEENQIFIPGRTCSIAGWG 965

Query: 92   --ALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQG 149
               + AGS +    L+  DVP+I N +C++      I     + M+CAGY  G  DSCQG
Sbjct: 966  YDKINAGSTV--DVLKEADVPLISNEKCQQQLPEYNIT----ESMICAGYEEGGIDSCQG 1019

Query: 150  DSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
            DSGGPLM +   RWFL+G+ S G  CA    PG+Y RV+  ++WI   ++
Sbjct: 1020 DSGGPLMCQENNRWFLVGVTSFGVQCALPNHPGVYVRVSQFIEWIHSFLH 1069

Responsible for initiating activation of pancreatic proteolytic proenzymes (trypsin, chymotrypsin and carboxypeptidase A). It catalyzes the conversion of trypsinogen to trypsin which in turn activates other proenzymes including chymotrypsinogen, procarboxypeptidases, and proelastases.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
328699375	770	PREDICTED: hypothetical protein LOC10016	0.970	0.255	0.913	1e-107
242023435	229	tripsin, putative [Pediculus humanus cor	0.965	0.855	0.908	1e-105
345483903	612	PREDICTED: hypothetical protein LOC10011	0.965	0.320	0.877	1e-102
307197097	512	Serine proteinase stubble [Harpegnathos	0.965	0.382	0.887	1e-102
340724408	515	PREDICTED: proclotting enzyme-like [Bomb	0.965	0.380	0.887	1e-102
307180587	613	Serine proteinase stubble [Camponotus fl	0.965	0.319	0.882	1e-102
328785080	518	PREDICTED: transmembrane protease serine	0.965	0.378	0.887	1e-102
383854890	522	PREDICTED: proclotting enzyme-like [Mega	0.965	0.375	0.882	1e-102
380022300	524	PREDICTED: transmembrane protease serine	0.965	0.374	0.887	1e-102
350397693	515	PREDICTED: proclotting enzyme-like [Bomb	0.965	0.380	0.887	1e-102

>gi|328699375|ref|XP_001945864.2| PREDICTED: hypothetical protein LOC100167464 [Acyrthosiphon pisum]

 Score =  392 bits (1007), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/197 (91%), Positives = 194/197 (98%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           ASARQVQVTLGDYVINSAVEPLPAYTFGVRKI+VHP+FKFTPQADR+DVAVLRLDRPVQY
Sbjct: 572 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKISVHPFFKFTPQADRFDVAVLRLDRPVQY 631

Query: 65  MPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
           MPHIAPICLP+KGEDFLG +GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN
Sbjct: 632 MPHIAPICLPDKGEDFLGHYGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 691

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
           GINV+IYDEMMCAGYR G+KDSCQGDSGGPLM+E+TGRW+LIGIVSAGYSCAQ+GQPGIY
Sbjct: 692 GINVIIYDEMMCAGYREGSKDSCQGDSGGPLMLEKTGRWYLIGIVSAGYSCAQRGQPGIY 751

Query: 185 HRVAYTVDWISYIMNTA 201
           HRVA TVDWISYI+N++
Sbjct: 752 HRVALTVDWISYIINSS 768

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023435|ref|XP_002432139.1| tripsin, putative [Pediculus humanus corporis] gi|212517521|gb|EEB19401.1| tripsin, putative [Pediculus humanus corporis]

 Score =  385 bits (989), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 178/196 (90%), Positives = 190/196 (96%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           ASARQVQVTLGDYVINSA+EPLPAYTFGVR+I VHPYFKFTPQADR+DVAVLRLDRPVQY
Sbjct: 34  ASARQVQVTLGDYVINSAIEPLPAYTFGVREIRVHPYFKFTPQADRFDVAVLRLDRPVQY 93

Query: 65  MPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
           MPHIAPICLPEK EDFLGQ+GWAAGWGALQAGSRLRPKTLQAVDVP+IDNRQCE+WHKSN
Sbjct: 94  MPHIAPICLPEKNEDFLGQYGWAAGWGALQAGSRLRPKTLQAVDVPVIDNRQCEKWHKSN 153

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
           GINVVIYDEMMCAGYR G KDSCQGDSGGPLMME+  RW+LIGIVSAGYSCAQ+GQPGIY
Sbjct: 154 GINVVIYDEMMCAGYRNGGKDSCQGDSGGPLMMEKANRWYLIGIVSAGYSCAQRGQPGIY 213

Query: 185 HRVAYTVDWISYIMNT 200
           HRVA+TVDWISYI+N+
Sbjct: 214 HRVAHTVDWISYIINS 229

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483903|ref|XP_001602310.2| PREDICTED: hypothetical protein LOC100118310 [Nasonia vitripennis]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 172/196 (87%), Positives = 187/196 (95%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           ASARQVQVTLGDYV+NSA E LPAYTFGVR+I VHPYFKFTPQADR+DVAVLRLDRPV Y
Sbjct: 417 ASARQVQVTLGDYVVNSATESLPAYTFGVREIRVHPYFKFTPQADRFDVAVLRLDRPVHY 476

Query: 65  MPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
           MPHIAPICLPEK EDFLGQ+GWAAGWGALQAGSRLRPKTLQAVDVP+IDNR CERWH++N
Sbjct: 477 MPHIAPICLPEKNEDFLGQYGWAAGWGALQAGSRLRPKTLQAVDVPVIDNRVCERWHRTN 536

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
           GINVVIYDEMMCAGYRGG KDSCQGDSGGPLM+E+TG+W+LIGIVSAGYSCAQ GQPGIY
Sbjct: 537 GINVVIYDEMMCAGYRGGGKDSCQGDSGGPLMLEKTGKWYLIGIVSAGYSCAQPGQPGIY 596

Query: 185 HRVAYTVDWISYIMNT 200
           HRVA TVDWI+Y++N+
Sbjct: 597 HRVAKTVDWITYVINS 612

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307197097|gb|EFN78465.1| Serine proteinase stubble [Harpegnathos saltator]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/196 (88%), Positives = 187/196 (95%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           ASARQVQVTLGDYV+NSA E LPAYTFGVR+I VHPYFKFTPQADR+DVAVLRLDRPV Y
Sbjct: 317 ASARQVQVTLGDYVVNSASESLPAYTFGVREIRVHPYFKFTPQADRFDVAVLRLDRPVHY 376

Query: 65  MPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
           MPHIAPICLPEK EDFLGQ+GWAAGWGALQAGSRLRPKTLQAVDVP+IDNR CERWH+SN
Sbjct: 377 MPHIAPICLPEKNEDFLGQYGWAAGWGALQAGSRLRPKTLQAVDVPVIDNRVCERWHRSN 436

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
           GINVVIYDEMMCAGYRGG KDSCQGDSGGPLM+E+TGRW+LIGIVSAGYSCAQ GQPGIY
Sbjct: 437 GINVVIYDEMMCAGYRGGGKDSCQGDSGGPLMLEKTGRWYLIGIVSAGYSCAQPGQPGIY 496

Query: 185 HRVAYTVDWISYIMNT 200
           HRVA TVDWI+Y++N+
Sbjct: 497 HRVAKTVDWITYVINS 512

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724408|ref|XP_003400574.1| PREDICTED: proclotting enzyme-like [Bombus terrestris]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/196 (88%), Positives = 187/196 (95%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           ASARQVQVTLGDYV+NSA E LPAYTFGVR+I VHPYFKFTPQADR+DVAVLRLDRPV Y
Sbjct: 320 ASARQVQVTLGDYVVNSASETLPAYTFGVREIRVHPYFKFTPQADRFDVAVLRLDRPVHY 379

Query: 65  MPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
           MPHIAPICLPEK EDFLGQ+GWAAGWGALQAGSRLRPKTLQAVDVP+IDNR CERWH+SN
Sbjct: 380 MPHIAPICLPEKNEDFLGQYGWAAGWGALQAGSRLRPKTLQAVDVPVIDNRICERWHRSN 439

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
           GINVVIYDEMMCAGYRGG KDSCQGDSGGPLM+E+TGRW+LIGIVSAGYSCAQ GQPGIY
Sbjct: 440 GINVVIYDEMMCAGYRGGGKDSCQGDSGGPLMLEKTGRWYLIGIVSAGYSCAQPGQPGIY 499

Query: 185 HRVAYTVDWISYIMNT 200
           HRVA TVDWI+Y++N+
Sbjct: 500 HRVAKTVDWITYVINS 515

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180587|gb|EFN68542.1| Serine proteinase stubble [Camponotus floridanus]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/196 (88%), Positives = 187/196 (95%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           ASARQVQVTLGDYV+NSA E LPAYTFGVR+I VHPYFKFTPQADR+DVAVLRLDRPV Y
Sbjct: 418 ASARQVQVTLGDYVVNSASESLPAYTFGVREIRVHPYFKFTPQADRFDVAVLRLDRPVHY 477

Query: 65  MPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
           MPHIAPICLPEK EDFLGQ+GWAAGWGALQAGSRLRPKTLQAVDVP+IDNR CERWH+SN
Sbjct: 478 MPHIAPICLPEKNEDFLGQYGWAAGWGALQAGSRLRPKTLQAVDVPVIDNRLCERWHRSN 537

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
           GINVVIYDEMMCAGYRGG K+SCQGDSGGPLM+E+TGRW+LIGIVSAGYSCAQ GQPGIY
Sbjct: 538 GINVVIYDEMMCAGYRGGGKESCQGDSGGPLMLEKTGRWYLIGIVSAGYSCAQPGQPGIY 597

Query: 185 HRVAYTVDWISYIMNT 200
           HRVA TVDWI+Y++N+
Sbjct: 598 HRVAKTVDWITYVINS 613

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785080|ref|XP_394005.3| PREDICTED: transmembrane protease serine 6 [Apis mellifera]

 Score =  375 bits (963), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/196 (88%), Positives = 187/196 (95%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           ASARQVQVTLGDYV+NSA E LPAYTFGVR+I VHPYFKFTPQADR+DVAVLRLDRPV Y
Sbjct: 323 ASARQVQVTLGDYVVNSASETLPAYTFGVREIRVHPYFKFTPQADRFDVAVLRLDRPVHY 382

Query: 65  MPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
           MPHIAPICLPEK EDFLGQ+GWAAGWGALQAGSRLRPKTLQAVDVP+IDNR CERWH+SN
Sbjct: 383 MPHIAPICLPEKNEDFLGQYGWAAGWGALQAGSRLRPKTLQAVDVPVIDNRICERWHRSN 442

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
           GINVVIYDEMMCAGYRGG KDSCQGDSGGPLM+E+TGRW+LIGIVSAGYSCAQ GQPGIY
Sbjct: 443 GINVVIYDEMMCAGYRGGGKDSCQGDSGGPLMLEKTGRWYLIGIVSAGYSCAQPGQPGIY 502

Query: 185 HRVAYTVDWISYIMNT 200
           HRVA TVDWI+Y++N+
Sbjct: 503 HRVAKTVDWITYVINS 518

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854890|ref|XP_003702953.1| PREDICTED: proclotting enzyme-like [Megachile rotundata]

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 173/196 (88%), Positives = 187/196 (95%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           A+ARQVQVTLGDYV+NSA E LPAYTFGVR+I VHPYFKFTPQADR+DVAVLRLDRPV Y
Sbjct: 327 AAARQVQVTLGDYVVNSASESLPAYTFGVREIRVHPYFKFTPQADRFDVAVLRLDRPVHY 386

Query: 65  MPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
           MPHIAPICLPEK EDFLGQ+GWAAGWGALQAGSRLRPKTLQAVDVP+IDNR CERWH+SN
Sbjct: 387 MPHIAPICLPEKNEDFLGQYGWAAGWGALQAGSRLRPKTLQAVDVPVIDNRVCERWHRSN 446

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
           GINVVIYDEMMCAGYRGG KDSCQGDSGGPLM+E+TGRW+LIGIVSAGYSCAQ GQPGIY
Sbjct: 447 GINVVIYDEMMCAGYRGGGKDSCQGDSGGPLMLEKTGRWYLIGIVSAGYSCAQPGQPGIY 506

Query: 185 HRVAYTVDWISYIMNT 200
           HRVA TVDWI+Y++N+
Sbjct: 507 HRVAKTVDWITYVINS 522

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022300|ref|XP_003694988.1| PREDICTED: transmembrane protease serine 6-like [Apis florea]

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/196 (88%), Positives = 187/196 (95%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           ASARQVQVTLGDYV+NSA E LPAYTFGVR+I VHPYFKFTPQADR+DVAVLRLDRPV Y
Sbjct: 329 ASARQVQVTLGDYVVNSASETLPAYTFGVREIRVHPYFKFTPQADRFDVAVLRLDRPVHY 388

Query: 65  MPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
           MPHIAPICLPEK EDFLGQ+GWAAGWGALQAGSRLRPKTLQAVDVP+IDNR CERWH+SN
Sbjct: 389 MPHIAPICLPEKNEDFLGQYGWAAGWGALQAGSRLRPKTLQAVDVPVIDNRICERWHRSN 448

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
           GINVVIYDEMMCAGYRGG KDSCQGDSGGPLM+E+TGRW+LIGIVSAGYSCAQ GQPGIY
Sbjct: 449 GINVVIYDEMMCAGYRGGGKDSCQGDSGGPLMLEKTGRWYLIGIVSAGYSCAQPGQPGIY 508

Query: 185 HRVAYTVDWISYIMNT 200
           HRVA TVDWI+Y++N+
Sbjct: 509 HRVAKTVDWITYVINS 524

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350397693|ref|XP_003484959.1| PREDICTED: proclotting enzyme-like [Bombus impatiens]

 Score =  375 bits (962), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 174/196 (88%), Positives = 187/196 (95%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           ASARQVQVTLGDYV+NSA E LPAYTFGVR+I VHPYFKFTPQADR+DVAVLRLDRPV Y
Sbjct: 320 ASARQVQVTLGDYVVNSASETLPAYTFGVREIRVHPYFKFTPQADRFDVAVLRLDRPVHY 379

Query: 65  MPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
           MPHIAPICLPEK EDFLGQ+GWAAGWGALQAGSRLRPKTLQAVDVP+IDNR CERWH+SN
Sbjct: 380 MPHIAPICLPEKNEDFLGQYGWAAGWGALQAGSRLRPKTLQAVDVPVIDNRICERWHRSN 439

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
           GINVVIYDEMMCAGYRGG KDSCQGDSGGPLM+E+TGRW+LIGIVSAGYSCAQ GQPGIY
Sbjct: 440 GINVVIYDEMMCAGYRGGGKDSCQGDSGGPLMLEKTGRWYLIGIVSAGYSCAQPGQPGIY 499

Query: 185 HRVAYTVDWISYIMNT 200
           HRVA TVDWI+Y++N+
Sbjct: 500 HRVAKTVDWITYVINS 515

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	203
FB|FBgn0033365	855	CG8170 [Drosophila melanogaste	0.980	0.232	0.708	3e-78
FB|FBgn0033363	389	CG13744 [Drosophila melanogast	0.862	0.449	0.429	7.4e-34
FB|FBgn0033362	561	CG8172 [Drosophila melanogaste	0.921	0.333	0.370	4.2e-32
FB|FBgn0003319	787	Sb "Stubble" [Drosophila melan	0.901	0.232	0.374	1.1e-29
FB|FBgn0265011	1041	Np "Notopleural" [Drosophila m	0.881	0.171	0.357	7.2e-27
UNIPROTKB|F1PNV5	636	KLKB1 "Uncharacterized protein	0.768	0.245	0.355	1.1e-26
FB|FBgn0033359	1693	CG8213 [Drosophila melanogaste	0.891	0.106	0.367	2.4e-26
UNIPROTKB|E9PGP2	573	F11 "Coagulation factor XI" [H	0.763	0.270	0.383	2.8e-26
UNIPROTKB|P03951	625	F11 "Coagulation factor XI" [H	0.763	0.248	0.383	3.7e-26
UNIPROTKB|Q9GZN4	317	PRSS22 "Brain-specific serine	0.482	0.309	0.418	5.1e-26

FB|FBgn0033365 CG8170 [Drosophila melanogaster (taxid:7227)]

 Score = 787 (282.1 bits), Expect = 3.0e-78, P = 3.0e-78
 Identities = 141/199 (70%), Positives = 162/199 (81%)

Query:     5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
             A+ RQV VTLGDYVINSAVEPLPAYTFGVR+I+VHPYFKFTPQADR+D++VL L+R V +
Sbjct:   656 ATPRQVHVTLGDYVINSAVEPLPAYTFGVRRIDVHPYFKFTPQADRFDISVLTLERTVHF 715

Query:    65 MPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
             MPHIAPICLPEK ED                 SRLRPKTLQAVDVP+I+NR CERWH+ N
Sbjct:   716 MPHIAPICLPEKNEDFLGKFGWAAGWGALNPGSRLRPKTLQAVDVPVIENRICERWHRQN 775

Query:   125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
             GINVVIY EM+CAGYR G KDSCQGDSGGPLM ++ GRW+LIG+VSAGYSCA +GQPGIY
Sbjct:   776 GINVVIYQEMLCAGYRNGGKDSCQGDSGGPLMHDKNGRWYLIGVVSAGYSCASRGQPGIY 835

Query:   185 HRVAYTVDWISYIMNTATN 203
             H V+ TVDW+SY++    N
Sbjct:   836 HSVSKTVDWVSYVVGLTMN 854

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0033363 CG13744 [Drosophila melanogaster (taxid:7227)]

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 76/177 (42%), Positives = 95/177 (53%)

Query:    24 EPLPAYTFGVRKINVHPYFKFT-PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXX 82
             EPLP    GV +  +HP F F   Q DRYD+A+L+L +P  +  HI PICLP+       
Sbjct:   208 EPLPVEKHGVLQKIIHPRFNFRMTQPDRYDIALLKLAQPTSFTEHILPICLPQYPIRLIG 267

Query:    83 XXXXXXX-XXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRG 141
                                   LQ   VPII    C RWH+S  INV I  EM CAG+  
Sbjct:   268 RKGLIAGWGKTEAHMGHAGTNMLQVASVPIITTLDCIRWHESKQINVEIKAEMFCAGHSD 327

Query:   142 GAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
             G  D+C GDSGGPL+++  GR+ L+GI SAG+ C    QPGIYH V  TV WI  ++
Sbjct:   328 GHMDACLGDSGGPLVIKERGRFVLVGITSAGFGCGVDHQPGIYHNVQKTVRWIQEVV 384

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0033362 CG8172 [Drosophila melanogaster (taxid:7227)]

 Score = 355 (130.0 bits), Expect = 4.2e-32, P = 4.2e-32
 Identities = 70/189 (37%), Positives = 101/189 (53%)

Query:    10 VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
             +++ LG++ +    E L    +G+ +  VHP++   P     DVA++RLDR V Y  HI 
Sbjct:   370 MKIRLGEWDVRGQEERLNHEEYGIERKEVHPHYN--PADFVNDVALIRLDRNVVYKQHII 427

Query:    70 PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
             P+CLP                          P  LQ VDV +I N +C+RW ++ G    
Sbjct:   428 PVCLPPSTTKLTGKMATVAGWGRTRHGQSTVPSVLQEVDVEVISNDRCQRWFRAAGRREA 487

Query:   130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
             I+D  +CAGY+ G +DSCQGDSGGPL +   GR  LIG+VS G  C ++  PG+Y  +  
Sbjct:   488 IHDVFLCAGYKDGGRDSCQGDSGGPLTLTMDGRKTLIGLVSWGIGCGREHLPGVYTNIQR 547

Query:   190 TVDWISYIM 198
              V WI+ +M
Sbjct:   548 FVPWINKVM 556

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

FB|FBgn0003319 Sb "Stubble" [Drosophila melanogaster (taxid:7227)]

 Score = 338 (124.0 bits), Expect = 1.1e-29, P = 1.1e-29
 Identities = 70/187 (37%), Positives = 100/187 (53%)

Query:     9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHI 68
             Q+++ +G+Y  +   E LP    GV K  VHP + F      YD+A+++L++P+++ PH+
Sbjct:   599 QIRIRVGEYDFSHVQEQLPYIERGVAKKVVHPKYSFLTY--EYDLALVKLEQPLEFAPHV 656

Query:    69 APICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
             +PICLPE                       L P  LQ V VPI+ N  C+      G   
Sbjct:   657 SPICLPETDSLLIGMNATVTGWGRLSEGGTL-PSVLQEVSVPIVSNDNCKSMFMRAGRQE 715

Query:   129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMME-RTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
              I D  +CAGY  G +DSCQGDSGGPL  + + GR+FL GI+S G  CA+   PG+  R+
Sbjct:   716 FIPDIFLCAGYETGGQDSCQGDSGGPLQAKSQDGRFFLAGIISWGIGCAEANLPGVCTRI 775

Query:   188 AYTVDWI 194
             +    WI
Sbjct:   776 SKFTPWI 782

GO:0007010 "cytoskeleton organization" evidence=NAS;IMP

GO:0005886 "plasma membrane" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0016335 "morphogenesis of larval imaginal disc epithelium" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0051017 "actin filament bundle assembly" evidence=IMP

FB|FBgn0265011 Np "Notopleural" [Drosophila melanogaster (taxid:7227)]

 Score = 314 (115.6 bits), Expect = 7.2e-27, P = 7.2e-27
 Identities = 68/190 (35%), Positives = 105/190 (55%)

Query:    14 LGDYVINSAVEPLPAYTFGVRKINV---HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAP 70
             LG+Y +    EP   Y +  R++ +   HP  +F P+   YD+A+LR   PV + P+I P
Sbjct:   856 LGEYDLAEEEEP---YGYQERRVQIVASHP--QFDPRTFEYDLALLRFYEPVIFQPNIIP 910

Query:    71 ICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVI 130
             +C+P+  E+                   L P  LQ V VP+I+N  CE  ++S G    I
Sbjct:   911 VCVPDNDENFIGQTAFVTGWGRLYEDGPL-PSVLQEVAVPVINNTICESMYRSAGYIEHI 969

Query:   131 YDEMMCAGYRGGAKDSCQGDSGGPLMMERTG--RWFLIGIVSAGYSCAQQGQPGIYHRVA 188
                 +CAG++ G  DSC+GDSGGP++++R    R+ L G++S G  CA+  QPG+Y R++
Sbjct:   970 PHIFICAGWKKGGYDSCEGDSGGPMVLQRESDKRFHLGGVISWGIGCAEANQPGVYTRIS 1029

Query:   189 YTVDWISYIM 198
                DWI+ I+
Sbjct:  1030 EFRDWINQIL 1039

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

UNIPROTKB|F1PNV5 KLKB1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 308 (113.5 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 58/163 (35%), Positives = 93/163 (57%)

Query:    33 VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
             +++I +H  +K T     YD+A+++L+ P+ Y     PICLP K +D             
Sbjct:   466 IKEIIIHQNYKIT-DGGSYDIALIKLEAPLNYTEFQKPICLPSK-DDTNTTYTNCWVTGW 523

Query:    93 XXXXSRLR-PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDS 151
                  R     +LQ  ++P++ N +C++ ++   +N     +M+CAGY+ G KD+C+GDS
Sbjct:   524 GFTKERGEIQNSLQKANIPLVPNEECQKKYRDYEVN----KQMICAGYKEGGKDACKGDS 579

Query:   152 GGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
             GGPL+ +  G W L+GI S G  C ++ QPG+Y +VA  VDWI
Sbjct:   580 GGPLVCKHNGNWHLVGITSWGEGCGRREQPGVYTKVAEYVDWI 622

GO:0051919 "positive regulation of fibrinolysis" evidence=IEA

GO:0031639 "plasminogen activation" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

FB|FBgn0033359 CG8213 [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 2.4e-26, P = 2.4e-26
 Identities = 68/185 (36%), Positives = 96/185 (51%)

Query:    14 LGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICL 73
             +G++ I+  +E   + T  V+++ VH   ++ P     D+A+L LD PVQ+  HI PIC+
Sbjct:  1508 MGEFDISGDLESKRSVTKNVKRVIVHR--QYDPATFENDLALLELDSPVQFDTHIVPICM 1565

Query:    74 PEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDE 133
             P    D                   + P  LQ V VPII+N  C+    + G N  I   
Sbjct:  1566 PNDVADFTGRMATVTGWGRLKYGGGV-PSVLQEVQVPIIENSVCQEMFHTAGHNKKILTS 1624

Query:   134 MMCAGYRGGAKDSCQGDSGGPLMMERT-GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVD 192
              +CAGY  G KDSC+GDSGGPL+++R  GR+ L G VS G  CA    PG+Y R  +   
Sbjct:  1625 FLCAGYANGQKDSCEGDSGGPLVLQRPDGRYELAGTVSHGIKCAAPYLPGVYMRTTFYKP 1684

Query:   193 WISYI 197
             W+  I
Sbjct:  1685 WLRSI 1689

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

UNIPROTKB|E9PGP2 F11 "Coagulation factor XI" [Homo sapiens (taxid:9606)]

 Score = 303 (111.7 bits), Expect = 2.8e-26, P = 2.8e-26
 Identities = 64/167 (38%), Positives = 92/167 (55%)

Query:    31 FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXX 90
             FGV++I +H  +K       YD+A+L+L+  V Y     PICLP KG+            
Sbjct:   409 FGVQEIIIHDQYKMAESG--YDIALLKLETTVNYTDSQRPICLPSKGD---RNVIYTDCW 463

Query:    91 XXXXXXSRLRPK---TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSC 147
                    +LR K   TLQ   +P++ N +C++ ++ + I      +M+CAGYR G KD+C
Sbjct:   464 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICAGYREGGKDAC 519

Query:   148 QGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
             +GDSGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct:   520 KGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 566

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0007596 "blood coagulation" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|P03951 F11 "Coagulation factor XI" [Homo sapiens (taxid:9606)]

 Score = 303 (111.7 bits), Expect = 3.7e-26, P = 3.7e-26
 Identities = 64/167 (38%), Positives = 92/167 (55%)

Query:    31 FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXX 90
             FGV++I +H  +K       YD+A+L+L+  V Y     PICLP KG+            
Sbjct:   461 FGVQEIIIHDQYKMAESG--YDIALLKLETTVNYTDSQRPICLPSKGD---RNVIYTDCW 515

Query:    91 XXXXXXSRLRPK---TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSC 147
                    +LR K   TLQ   +P++ N +C++ ++ + I      +M+CAGYR G KD+C
Sbjct:   516 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICAGYREGGKDAC 571

Query:   148 QGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
             +GDSGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct:   572 KGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 618

GO:0006508 "proteolysis" evidence=IEA

GO:0008201 "heparin binding" evidence=IEA

GO:0070009 "serine-type aminopeptidase activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS;TAS

GO:0016020 "membrane" evidence=NAS

GO:0007596 "blood coagulation" evidence=NAS;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=TAS

GO:0007597 "blood coagulation, intrinsic pathway" evidence=TAS

GO:0005615 "extracellular space" evidence=IDA

GO:0031639 "plasminogen activation" evidence=IDA

GO:0051919 "positive regulation of fibrinolysis" evidence=IDA

UNIPROTKB|Q9GZN4 PRSS22 "Brain-specific serine protease 4" [Homo sapiens (taxid:9606)]

 Score = 223 (83.6 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
 Identities = 41/98 (41%), Positives = 60/98 (61%)

Query:   101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
             P+TLQ + VPIID+  C   +        I ++M+CAGY  G +D+C GDSGGPLM +  
Sbjct:   192 PQTLQKLKVPIIDSEVCSHLYWRGAGQGPITEDMLCAGYLEGERDACLGDSGGPLMCQVD 251

Query:   161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
             G W L GI+S G  CA++ +PG+Y  ++    W+  I+
Sbjct:   252 GAWLLAGIISWGEGCAERNRPGVYISLSAHRSWVEKIV 289

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	203
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	8e-67
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	6e-62
pfam00089	218	pfam00089, Trypsin, Trypsin	1e-42
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	1e-09

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score =  204 bits (521), Expect = 8e-67
 Identities = 76/191 (39%), Positives = 103/191 (53%), Gaps = 9/191 (4%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           +     V LG + ++S           V+K+ VHP   + P     D+A+L+L RPV   
Sbjct: 48  APSNYTVRLGSHDLSSNEGG--GQVIKVKKVIVHP--NYNPSTYDNDIALLKLKRPVTLS 103

Query: 66  PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
            ++ PICLP  G +   G     +GWG    G  L P  LQ V+VPI+ N +C+R +   
Sbjct: 104 DNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPL-PDVLQEVNVPIVSNAECKRAYSYG 162

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
           G    I D M+CAG   G KD+CQGDSGGPL+    GR  L+GIVS G  CA+   PG+Y
Sbjct: 163 G---TITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVY 219

Query: 185 HRVAYTVDWIS 195
            RV+  +DWI 
Sbjct: 220 TRVSSYLDWIQ 230

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score =  191 bits (488), Expect = 6e-62
 Identities = 75/190 (39%), Positives = 103/190 (54%), Gaps = 10/190 (5%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
               ++V LG + ++S           V K+ +HP   + P     D+A+L+L  PV   
Sbjct: 49  DPSNIRVRLGSHDLSS---GEEGQVIKVSKVIIHP--NYNPSTYDNDIALLKLKEPVTLS 103

Query: 66  PHIAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
            ++ PICLP    +   G     +GWG    G+   P TLQ V+VPI+ N  C R +   
Sbjct: 104 DNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGG 163

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
           G    I D M+CAG   G KD+CQGDSGGPL+    GRW L+GIVS G  CA+ G+PG+Y
Sbjct: 164 G---AITDNMLCAGGLEGGKDACQGDSGGPLVCND-GRWVLVGIVSWGSGCARPGKPGVY 219

Query: 185 HRVAYTVDWI 194
            RV+  +DWI
Sbjct: 220 TRVSSYLDWI 229

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score =  142 bits (359), Expect = 1e-42
 Identities = 72/190 (37%), Positives = 96/190 (50%), Gaps = 18/190 (9%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           +A+ V+V LG + I           F V+K+ VHP   + P  D  D+A+L+L  PV   
Sbjct: 46  NAKSVRVVLGAHNIVLREGGEQ--KFDVKKVIVHP--NYNPDTD-NDIALLKLKSPVTLG 100

Query: 66  PHIAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
             + PICLP    D  +G     +GWG  +      P TLQ V VP++    C   +   
Sbjct: 101 DTVRPICLPTASSDLPVGTTCTVSGWGNTKTLGL--PDTLQEVTVPVVSRETCRSAY--- 155

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
                + D M+CAG   G KD+CQGDSGGPL+        LIGIVS GY CA    PG+Y
Sbjct: 156 --GGTVTDNMICAGA--GGKDACQGDSGGPLVCSDG---ELIGIVSWGYGCASGNYPGVY 208

Query: 185 HRVAYTVDWI 194
             V+  +DWI
Sbjct: 209 TPVSSYLDWI 218

Length = 218

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 51/180 (28%), Positives = 73/180 (40%), Gaps = 19/180 (10%)

Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFG-WA---- 87
           VR I VH ++  +P     D+AVL L R    +P +  I   +  + FL      +    
Sbjct: 108 VRTIYVHEFY--SPGNLGNDIAVLELARAAS-LPRVK-ITSFDASDTFLNSVTTVSPMTN 163

Query: 88  AGWGALQ--AGSRLRPKT--LQAVDVPIIDNRQCERWHKSNGINVVIYDEM--MCAGYRG 141
             +G        R  PK   L  V V  +    C + +K           +   CAG   
Sbjct: 164 GTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQ-YKGCANASDGATGLTGFCAGRPP 222

Query: 142 GAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMNT 200
             KD+CQGDSGGP+  +        G+VS G   C     PG+Y  V+   DWI+ + N 
Sbjct: 223 --KDACQGDSGGPIFHKGEEGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMTNG 280

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	203
KOG3627|consensus	256		100.0
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	100.0
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	99.97
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	99.96
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.85
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	98.99
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	97.08
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	96.7
PRK10898	353	serine endoprotease; Provisional	96.2
PRK10139	455	serine endoprotease; Provisional	95.95
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	95.82
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	95.51
PRK10942	473	serine endoprotease; Provisional	95.07
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	92.9
PF00947	127	Pico_P2A: Picornavirus core protein 2A; InterPro:	90.58

>KOG3627|consensus

Probab=100.00  E-value=1.7e-33  Score=220.25  Aligned_cols=186  Identities=45%  Similarity=0.783  Sum_probs=152.8

Q ss_pred             eeEEEeeeeeecccCCCCC-ceEEeeEEEEeCCCCCCCCCCCC-CCeEEEEECCCcCCCCCccceecCCCCC---CccCc
Q psy12782          9 QVQVTLGDYVINSAVEPLP-AYTFGVRKINVHPYFKFTPQADR-YDVAVLRLDRPVQYMPHIAPICLPEKGE---DFLGQ   83 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~-~~~~~v~~i~~hp~y~~~~~~~~-~DiALl~L~~~~~~~~~i~picl~~~~~---~~~~~   83 (203)
                      .+.|++|++......+... .+...|.++++||+|+  ..... ||||||+|.+++.|++.|+|+|||....   .....
T Consensus        64 ~~~V~~G~~~~~~~~~~~~~~~~~~v~~~i~H~~y~--~~~~~~nDiall~l~~~v~~~~~i~piclp~~~~~~~~~~~~  141 (256)
T KOG3627|consen   64 LYTVRLGEHDINLSVSEGEEQLVGDVEKIIVHPNYN--PRTLENNDIALLRLSEPVTFSSHIQPICLPSSADPYFPPGGT  141 (256)
T ss_pred             ceEEEECccccccccccCchhhhceeeEEEECCCCC--CCCCCCCCEEEEEECCCcccCCcccccCCCCCcccCCCCCCC
Confidence            7889999887666533211 2555588999999997  45555 9999999999999999999999986554   23458


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcE
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW  163 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~  163 (203)
                      .|.++|||.........+..|+..++.+++.+.|...+....   .+.+.++|++......+.|+||+||||++..++++
T Consensus       142 ~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~~~---~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~~~~  218 (256)
T KOG3627|consen  142 TCLVSGWGRTESGGGPLPDTLQEVDVPIISNSECRRAYGGLG---TITDTMLCAGGPEGGKDACQGDSGGPLVCEDNGRW  218 (256)
T ss_pred             EEEEEeCCCcCCCCCCCCceeEEEEEeEcChhHhcccccCcc---ccCCCEEeeCccCCCCccccCCCCCeEEEeeCCcE
Confidence            899999998876633347789999999999999998876421   25567899997555677899999999999987789


Q ss_pred             EEEEEEEecCC-CCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        164 FLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       164 ~lvGv~s~~~~-c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      +++||+||+.. |.....|++||+|+.|.+||++.+.
T Consensus       219 ~~~GivS~G~~~C~~~~~P~vyt~V~~y~~WI~~~~~  255 (256)
T KOG3627|consen  219 VLVGIVSWGSGGCGQPNYPGVYTRVSSYLDWIKENIG  255 (256)
T ss_pred             EEEEEEEecCCCCCCCCCCeEEeEhHHhHHHHHHHhc
Confidence            99999999988 9888899999999999999999875

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=100.00  E-value=5.4e-33  Score=213.25  Aligned_cols=183  Identities=40%  Similarity=0.714  Sum_probs=155.2

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCC-CccCcee
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE-DFLGQFG   85 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~-~~~~~~~   85 (203)
                      +..+.|++|.........  ..+.+.|.++++||+|+  .....+|||||+|++|+.++..++|+|||.... ...+..+
T Consensus        49 ~~~~~v~~g~~~~~~~~~--~~~~~~v~~~~~hp~y~--~~~~~~DiAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~  124 (232)
T cd00190          49 PSNYTVRLGSHDLSSNEG--GGQVIKVKKVIVHPNYN--PSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTC  124 (232)
T ss_pred             CccEEEEeCcccccCCCC--ceEEEEEEEEEECCCCC--CCCCcCCEEEEEECCcccCCCcccceECCCccccCCCCCEE
Confidence            467999999988876443  37889999999999997  456889999999999999999999999998852 2357899


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFL  165 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~l  165 (203)
                      .++|||....... ....++...+.+++...|...+..   ...+.+.++|+.........|.||+||||++..+++++|
T Consensus       125 ~~~G~g~~~~~~~-~~~~~~~~~~~~~~~~~C~~~~~~---~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~l  200 (232)
T cd00190         125 TVSGWGRTSEGGP-LPDVLQEVNVPIVSNAECKRAYSY---GGTITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVL  200 (232)
T ss_pred             EEEeCCcCCCCCC-CCceeeEEEeeeECHHHhhhhccC---cccCCCceEeeCCCCCCCccccCCCCCcEEEEeCCEEEE
Confidence            9999998765522 367899999999999999987763   124789999998664457899999999999998899999


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCCCCHHHHHHh
Q psy12782        166 IGIVSAGYSCAQQGQPGIYHRVAYTVDWISYI  197 (203)
Q Consensus       166 vGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~  197 (203)
                      +||+|++..|...+.|.+|++|+.|++||+++
T Consensus       201 vGI~s~g~~c~~~~~~~~~t~v~~~~~WI~~~  232 (232)
T cd00190         201 VGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT  232 (232)
T ss_pred             EEEEehhhccCCCCCCCEEEEcHHhhHHhhcC
Confidence            99999998887667799999999999999864

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=99.97  E-value=8.8e-30  Score=195.51  Aligned_cols=179  Identities=41%  Similarity=0.781  Sum_probs=150.3

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC-ccCcee
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED-FLGQFG   85 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~-~~~~~~   85 (203)
                      +..+.|++|........+   .+.+.|.++++||+|+  .....+|||||+|++|+.++..++|+||+..... ..+..+
T Consensus        50 ~~~~~v~~g~~~~~~~~~---~~~~~v~~~~~~p~~~--~~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~~~~~~~~~  124 (229)
T smart00020       50 PSNIRVRLGSHDLSSGEE---GQVIKVSKVIIHPNYN--PSTYDNDIALLKLKSPVTLSDNVRPICLPSSNYNVPAGTTC  124 (229)
T ss_pred             CcceEEEeCcccCCCCCC---ceEEeeEEEEECCCCC--CCCCcCCEEEEEECcccCCCCceeeccCCCcccccCCCCEE
Confidence            468999999988776432   3789999999999997  4678899999999999999999999999987322 357899


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFL  165 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~l  165 (203)
                      .++|||............++...+.+++.+.|...+...   ..+.+.++|++........|.+|+||||++..+ +|+|
T Consensus       125 ~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~---~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~-~~~l  200 (229)
T smart00020      125 TVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGG---GAITDNMLCAGGLEGGKDACQGDSGGPLVCNDG-RWVL  200 (229)
T ss_pred             EEEeCCCCCCCCCcCCCEeeEEEEEEeCHHHhhhhhccc---cccCCCcEeecCCCCCCcccCCCCCCeeEEECC-CEEE
Confidence            999999876432233567899999999999999876541   237889999986654578999999999999877 9999


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCCCCHHHH
Q psy12782        166 IGIVSAGYSCAQQGQPGIYHRVAYTVDWI  194 (203)
Q Consensus       166 vGv~s~~~~c~~~~~~~v~t~v~~~~~WI  194 (203)
                      +||++++..|...+.|.+|++|++|.+||
T Consensus       201 ~Gi~s~g~~C~~~~~~~~~~~i~~~~~WI  229 (229)
T smart00020      201 VGIVSWGSGCARPGKPGVYTRVSSYLDWI  229 (229)
T ss_pred             EEEEEECCCCCCCCCCCEEEEeccccccC
Confidence            99999999898667899999999999998

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.96  E-value=4.7e-28  Score=184.49  Aligned_cols=173  Identities=39%  Similarity=0.770  Sum_probs=144.4

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC-ccCcee
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED-FLGQFG   85 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~-~~~~~~   85 (203)
                      .+++.|++|...+.....  ..+.+.|++++.||+|+.  ....+|||||+|++++.+.+.+.|+|++..... ..+..+
T Consensus        47 ~~~~~v~~g~~~~~~~~~--~~~~~~v~~~~~h~~~~~--~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~  122 (220)
T PF00089_consen   47 ASDIKVRLGTYSIRNSDG--SEQTIKVSKIIIHPKYDP--STYDNDIALLKLDRPITFGDNIQPICLPSAGSDPNVGTSC  122 (220)
T ss_dssp             GGSEEEEESESBTTSTTT--TSEEEEEEEEEEETTSBT--TTTTTSEEEEEESSSSEHBSSBEESBBTSTTHTTTTTSEE
T ss_pred             cccccccccccccccccc--cccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccc
Confidence            357889999844444333  268999999999999983  446899999999999999999999999995432 357899


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFL  165 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~l  165 (203)
                      .+.||+......  ....++...+.+++.+.|...++.     .+.+.++|++.. .....|.||+||||++.+.   +|
T Consensus       123 ~~~G~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~~~~-----~~~~~~~c~~~~-~~~~~~~g~sG~pl~~~~~---~l  191 (220)
T PF00089_consen  123 IVVGWGRTSDNG--YSSNLQSVTVPVVSRKTCRSSYND-----NLTPNMICAGSS-GSGDACQGDSGGPLICNNN---YL  191 (220)
T ss_dssp             EEEESSBSSTTS--BTSBEEEEEEEEEEHHHHHHHTTT-----TSTTTEEEEETT-SSSBGGTTTTTSEEEETTE---EE
T ss_pred             cccccccccccc--cccccccccccccccccccccccc-----cccccccccccc-cccccccccccccccccee---ee
Confidence            999999865554  256799999999999999987543     278999999865 4578999999999999865   89


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCCCCHHHH
Q psy12782        166 IGIVSAGYSCAQQGQPGIYHRVAYTVDWI  194 (203)
Q Consensus       166 vGv~s~~~~c~~~~~~~v~t~v~~~~~WI  194 (203)
                      +||.+++..|...+.|.+|++|+.|++||
T Consensus       192 vGI~s~~~~c~~~~~~~v~~~v~~~~~WI  220 (220)
T PF00089_consen  192 VGIVSFGENCGSPNYPGVYTRVSSYLDWI  220 (220)
T ss_dssp             EEEEEEESSSSBTTSEEEEEEGGGGHHHH
T ss_pred             cceeeecCCCCCCCcCEEEEEHHHhhccC
Confidence            99999998898877899999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.85  E-value=3.2e-20  Score=145.42  Aligned_cols=185  Identities=26%  Similarity=0.356  Sum_probs=131.7

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCC-CccceecCC--CCCCccCcee
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP-HIAPICLPE--KGEDFLGQFG   85 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~-~i~picl~~--~~~~~~~~~~   85 (203)
                      +..+..+...++....   .+-.+|++++.|..|.  ..++.||||+++|+++..... .+....-+.  ..........
T Consensus        87 s~d~~~vv~~l~d~Sq---~~rg~vr~i~~~efY~--~~n~~ND~Av~~l~~~a~~pr~ki~~~~~sdt~l~sv~~~s~~  161 (413)
T COG5640          87 SSDVNRVVVDLNDSSQ---AERGHVRTIYVHEFYS--PGNLGNDIAVLELARAASLPRVKITSFDASDTFLNSVTTVSPM  161 (413)
T ss_pred             cccceEEEeccccccc---ccCcceEEEeeecccc--cccccCcceeeccccccccchhheeeccCcccceecccccccc
Confidence            3445555555555433   6778999999999996  789999999999999765431 122211111  1111124555


Q ss_pred             EEeecccccCCCCC--Cc--cCceEEEEeeeChhhHhhHhhhC-CCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeC
Q psy12782         86 WAAGWGALQAGSRL--RP--KTLQAVDVPIIDNRQCERWHKSN-GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT  160 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~--~~--~~l~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~  160 (203)
                      ...+|+........  .+  ..+++..+...+...|..+.... .......-.-+|++...  ++.|+||+|||++....
T Consensus       162 ~n~t~~~~~~~~v~~~~p~gt~l~e~~v~fv~~stc~~~~g~an~~dg~~~lT~~cag~~~--~daCqGDSGGPi~~~g~  239 (413)
T COG5640         162 TNGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCAQYKGCANASDGATGLTGFCAGRPP--KDACQGDSGGPIFHKGE  239 (413)
T ss_pred             cceeeeeeeecCCCCCCCccceeeeeeeeeechHHhhhhccccccCCCCCCccceecCCCC--cccccCCCCCceEEeCC
Confidence            66677654422211  12  47899999999999999987511 11122333449998664  79999999999999987


Q ss_pred             CcEEEEEEEEecCC-CCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        161 GRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       161 ~~~~lvGv~s~~~~-c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      ....++||+|||++ |+.+..|.|||+|+.|.+||...++.
T Consensus       240 ~G~vQ~GVvSwG~~~Cg~t~~~gVyT~vsny~~WI~a~~~~  280 (413)
T COG5640         240 EGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWIAAMTNG  280 (413)
T ss_pred             CccEEEeEEEecCCCCCCCCcceeEEehhHHHHHHHHHhcC
Confidence            77899999999997 99999999999999999999998764

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=98.99  E-value=1.1e-08  Score=81.32  Aligned_cols=140  Identities=23%  Similarity=0.416  Sum_probs=93.6

Q ss_pred             eEEeeEEEEeCCCC--CCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeEEeecccccCCCCCCccCce
Q psy12782         29 YTFGVRKINVHPYF--KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQ  105 (203)
Q Consensus        29 ~~~~v~~i~~hp~y--~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~~~Gwg~~~~~~~~~~~~l~  105 (203)
                      ...+|.++++--.-  .........+++||+|+++  ++....|+|||+..... .++...+.|+.        ....+.
T Consensus       137 ~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~--~~~~~~~~Cl~~~~~~~~~~~~~~~yg~~--------~~~~~~  206 (282)
T PF03761_consen  137 FSIKVKKAYILNGCKKIKKNFNRPYSPMILELEED--FSKNVSPPCLADSSTNWEKGDEVDVYGFN--------STGKLK  206 (282)
T ss_pred             ccceeEEEEEEecCCCcccccccccceEEEEEccc--ccccCCCEEeCCCccccccCceEEEeecC--------CCCeEE
Confidence            34566666553222  1113455679999999999  77889999999887644 45666677761        133455


Q ss_pred             EEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEE
Q psy12782        106 AVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH  185 (203)
Q Consensus       106 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t  185 (203)
                      ...+.+.....                   |..........|.+|+||||+...+|+|+|+||.+.+...+..+ ...|.
T Consensus       207 ~~~~~i~~~~~-------------------~~~~~~~~~~~~~~d~Gg~lv~~~~gr~tlIGv~~~~~~~~~~~-~~~f~  266 (282)
T PF03761_consen  207 HRKLKITNCTK-------------------CAYSICTKQYSCKGDRGGPLVKNINGRWTLIGVGASGNYECNKN-NSYFF  266 (282)
T ss_pred             EEEEEEEEeec-------------------cceeEecccccCCCCccCeEEEEECCCEEEEEEEccCCCccccc-ccEEE
Confidence            55555544322                   22222233678999999999999999999999999876322212 57899


Q ss_pred             eCCCCHHHHHHhh
Q psy12782        186 RVAYTVDWISYIM  198 (203)
Q Consensus       186 ~v~~~~~WI~~~i  198 (203)
                      +|..|.+=|.+.+
T Consensus       267 ~v~~~~~~IC~lt  279 (282)
T PF03761_consen  267 NVSWYQDEICELT  279 (282)
T ss_pred             EHHHhhhhhccce
Confidence            9999888776554

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.08  E-value=0.0022  Score=49.06  Aligned_cols=76  Identities=21%  Similarity=0.235  Sum_probs=53.7

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGW   86 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~   86 (203)
                      .=+.|.+|..-.....+.+-+|.++|..+..=|         +.+++||.|++|+.|+.+|+|..||....+. ....|.
T Consensus        55 ~YvsallG~~Kt~~~v~Gp~EQI~rVD~~~~V~---------~S~v~LLHL~~~~~fTr~VlP~flp~~~~~~~~~~~CV  125 (267)
T PF09342_consen   55 HYVSALLGGGKTYLSVDGPHEQISRVDCFKDVP---------ESNVLLLHLEQPANFTRYVLPTFLPETSNENESDDECV  125 (267)
T ss_pred             ceEEEEecCcceecccCCChheEEEeeeeeecc---------ccceeeeeecCcccceeeecccccccccCCCCCCCceE
Confidence            346677776553333344457777777763333         5589999999999999999999999743333 466899


Q ss_pred             Eeeccc
Q psy12782         87 AAGWGA   92 (203)
Q Consensus        87 ~~Gwg~   92 (203)
                      .+|-..
T Consensus       126 AVg~d~  131 (267)
T PF09342_consen  126 AVGHDD  131 (267)
T ss_pred             EEEccc
Confidence            998653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=96.70  E-value=0.034  Score=46.95  Aligned_cols=123  Identities=24%  Similarity=0.295  Sum_probs=61.9

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCccc
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV  129 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~  129 (203)
                      ..|||||+++.+    ..+.++.|........++.+.+.|+-....      ..+..-.+.-..+.   . ....     
T Consensus       104 ~~DlAllkv~~~----~~~~~~~l~~~~~~~~G~~v~aiG~p~g~~------~~~t~G~vs~~~~~---~-~~~~-----  164 (428)
T TIGR02037       104 RTDIAVLKIDAK----KNLPVIKLGDSDKLRVGDWVLAIGNPFGLG------QTVTSGIVSALGRS---G-LGIG-----  164 (428)
T ss_pred             CCCEEEEEecCC----CCceEEEccCCCCCCCCCEEEEEECCCcCC------CcEEEEEEEecccC---c-cCCC-----
Confidence            359999999865    345577776554434789999999753211      11111111111110   0 0000     


Q ss_pred             ccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCC-CCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       130 ~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~-c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      ....++=     .......|.+||||+... |+  ++||.+.... ...........-+......+++.++
T Consensus       165 ~~~~~i~-----tda~i~~GnSGGpl~n~~-G~--viGI~~~~~~~~g~~~g~~faiP~~~~~~~~~~l~~  227 (428)
T TIGR02037       165 DYENFIQ-----TDAAINPGNSGGPLVNLR-GE--VIGINTAIYSPSGGNVGIGFAIPSNMAKNVVDQLIE  227 (428)
T ss_pred             CccceEE-----ECCCCCCCCCCCceECCC-Ce--EEEEEeEEEcCCCCccceEEEEEhHHHHHHHHHHHh
Confidence            0111111     123556789999998653 43  9999876432 1111112334444445555555443

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10898 serine endoprotease; Provisional

Probab=96.20  E-value=0.17  Score=41.67  Aligned_cols=27  Identities=33%  Similarity=0.634  Sum_probs=20.2

Q ss_pred             CCCCcCCCCCeeEEeeCCcEEEEEEEEecC
Q psy12782        144 KDSCQGDSGGPLMMERTGRWFLIGIVSAGY  173 (203)
Q Consensus       144 ~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~  173 (203)
                      .....|.+||||+..+ |+  ++||.+...
T Consensus       193 a~i~~GnSGGPl~n~~-G~--vvGI~~~~~  219 (353)
T PRK10898        193 ASINHGNSGGALVNSL-GE--LMGINTLSF  219 (353)
T ss_pred             cccCCCCCcceEECCC-Ce--EEEEEEEEe
Confidence            4567789999999753 32  999998653

>PRK10139 serine endoprotease; Provisional

Probab=95.95  E-value=0.17  Score=43.10  Aligned_cols=123  Identities=20%  Similarity=0.228  Sum_probs=62.3

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCccc
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV  129 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~  129 (203)
                      ..||||||++.+-    ...++.|.+......++.+...|+-...      ...   +..-+++..  .+.....    .
T Consensus       137 ~~DlAvlkv~~~~----~l~~~~lg~s~~~~~G~~V~aiG~P~g~------~~t---vt~GivS~~--~r~~~~~----~  197 (455)
T PRK10139        137 QSDIALLQIQNPS----KLTQIAIADSDKLRVGDFAVAVGNPFGL------GQT---ATSGIISAL--GRSGLNL----E  197 (455)
T ss_pred             CCCEEEEEecCCC----CCceeEecCccccCCCCEEEEEecCCCC------CCc---eEEEEEccc--cccccCC----C
Confidence            4699999998642    3446667655433468888888863211      111   112222221  0000000    0


Q ss_pred             ccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCC-CCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSC-AQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       130 ~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c-~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      -....+     ........|.+||||+... |  .++||.+....- ......+...-+..-...+++.++
T Consensus       198 ~~~~~i-----qtda~in~GnSGGpl~n~~-G--~vIGi~~~~~~~~~~~~gigfaIP~~~~~~v~~~l~~  260 (455)
T PRK10139        198 GLENFI-----QTDASINRGNSGGALLNLN-G--ELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLID  260 (455)
T ss_pred             CcceEE-----EECCccCCCCCcceEECCC-C--eEEEEEEEEEcCCCCccceEEEEEhHHHHHHHHHHhh
Confidence            001112     1224567899999999754 2  299999874321 111123444555444555555554

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=95.82  E-value=0.12  Score=40.13  Aligned_cols=54  Identities=19%  Similarity=0.335  Sum_probs=37.8

Q ss_pred             CCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCC-CCHHHHHHhhc
Q psy12782        143 AKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA-YTVDWISYIMN  199 (203)
Q Consensus       143 ~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~-~~~~WI~~~i~  199 (203)
                      ..+.+.|++|+|++...+   +++||..-+..-.......-.+|+. ..++||.+.++
T Consensus       197 ~~dT~pG~SGSpv~~~~~---~vigv~~~g~~~~~~~~~n~~vr~t~~~~~~I~~~~~  251 (251)
T COG3591         197 DADTLPGSSGSPVLISKD---EVIGVHYNGPGANGGSLANNAVRLTPEILNFIQQNIK  251 (251)
T ss_pred             EecccCCCCCCceEecCc---eEEEEEecCCCcccccccCcceEecHHHHHHHHHhhC
Confidence            357899999999999776   7999999887532222233344444 46799988763

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=95.51  E-value=0.26  Score=40.59  Aligned_cols=37  Identities=22%  Similarity=0.230  Sum_probs=24.3

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecc
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWG   91 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg   91 (203)
                      ..||||||++.+-     +.++.+........++.+.+.|+.
T Consensus       124 ~~DlAvlkv~~~~-----~~~~~l~~s~~~~~G~~V~aiG~P  160 (351)
T TIGR02038       124 LTDLAVLKIEGDN-----LPTIPVNLDRPPHVGDVVLAIGNP  160 (351)
T ss_pred             CCCEEEEEecCCC-----CceEeccCcCccCCCCEEEEEeCC
Confidence            4599999998642     334445333333368999999985

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10942 serine endoprotease; Provisional

Probab=95.07  E-value=0.35  Score=41.47  Aligned_cols=37  Identities=24%  Similarity=0.451  Sum_probs=24.5

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeec
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGW   90 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gw   90 (203)
                      ..||||||++.+-.    ..++.|.+......++.+.+.|.
T Consensus       158 ~~DlAvlki~~~~~----l~~~~lg~s~~l~~G~~V~aiG~  194 (473)
T PRK10942        158 RSDIALIQLQNPKN----LTAIKMADSDALRVGDYTVAIGN  194 (473)
T ss_pred             CCCEEEEEecCCCC----CceeEecCccccCCCCEEEEEcC
Confidence            46999999975322    34566655443346888888885

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.90  E-value=0.079  Score=47.80  Aligned_cols=32  Identities=34%  Similarity=0.737  Sum_probs=22.6

Q ss_pred             CCCCcCCCCCeeEEee--CCcEEEEEEEEecCCC
Q psy12782        144 KDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSC  175 (203)
Q Consensus       144 ~~~c~~d~G~pl~~~~--~~~~~lvGv~s~~~~c  175 (203)
                      ...-.|||||||+.-+  +++|+|+||.+.+...
T Consensus       211 n~~~~GDSGSPlF~YD~~~kKWvl~Gv~~~~~~~  244 (769)
T PF02395_consen  211 NYGSPGDSGSPLFAYDKEKKKWVLVGVLSGGNGY  244 (769)
T ss_dssp             EB--TT-TT-EEEEEETTTTEEEEEEEEEEECCC
T ss_pred             cccccCcCCCceEEEEccCCeEEEEEEEcccccc
Confidence            3567899999998755  6789999999987554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=90.58  E-value=0.34  Score=33.46  Aligned_cols=35  Identities=31%  Similarity=0.416  Sum_probs=27.2

Q ss_pred             CcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCC
Q psy12782        147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYT  190 (203)
Q Consensus       147 c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~  190 (203)
                      -.||-||+|.|+..    ++||++.|-+     ....|++|+.+
T Consensus        88 ~PGdCGg~L~C~HG----ViGi~Tagg~-----g~VaF~dir~~  122 (127)
T PF00947_consen   88 EPGDCGGILRCKHG----VIGIVTAGGE-----GHVAFADIRDL  122 (127)
T ss_dssp             STT-TCSEEEETTC----EEEEEEEEET-----TEEEEEECCCG
T ss_pred             CCCCCCceeEeCCC----eEEEEEeCCC-----ceEEEEechhh
Confidence            36799999999987    9999998732     24679999884

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	203
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		3e-28
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		1e-27
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		1e-27
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		1e-27
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		2e-27
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		7e-27
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		1e-26
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		1e-26
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		2e-26
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		2e-26
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		2e-26
2any_A	241	Expression, Crystallization And The Three-Dimension		9e-26
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		1e-25
2anw_A	241	Expression, Crystallization And Three-Dimensional S		1e-25
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		1e-24
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		4e-24
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		2e-23
1pfx_C	235	Porcine Factor Ixa Length = 235		3e-23
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		7e-23
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		9e-23
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		3e-22
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		4e-22
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		5e-22
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		5e-22
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		5e-22
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		6e-22
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		6e-22
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		6e-22
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		6e-22
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		6e-22
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		7e-22
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		9e-22
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		1e-21
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		1e-21
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		1e-21
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		1e-21
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		1e-21
1kig_H	241	Bovine Factor Xa Length = 241		1e-21
2bok_A	241	Factor Xa- Cation Length = 241		1e-21
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		1e-21
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		1e-21
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		2e-21
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		2e-21
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		2e-21
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		2e-21
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		2e-21
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		2e-21
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		2e-21
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		2e-21
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		3e-21
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		3e-21
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		3e-21
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		3e-21
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		4e-21
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		4e-21
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		4e-21
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		4e-21
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		4e-21
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		4e-21
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		4e-21
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		4e-21
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		4e-21
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		4e-21
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		4e-21
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		5e-21
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		5e-21
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		5e-21
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		5e-21
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		5e-21
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		5e-21
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		5e-21
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		5e-21
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		5e-21
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		5e-21
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		5e-21
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		6e-21
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		6e-21
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		6e-21
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		7e-21
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		9e-21
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		9e-21
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		1e-20
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		1e-20
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		1e-20
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		1e-20
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		1e-20
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		1e-20
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		2e-20
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		2e-20
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		2e-20
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		3e-20
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		4e-20
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		4e-20
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		5e-20
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		7e-20
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		1e-19
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		2e-19
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		2e-19
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		2e-19
1aut_C	250	Human Activated Protein C Length = 250		2e-19
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		3e-19
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		3e-19
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		3e-19
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		4e-19
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		4e-19
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		5e-19
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		5e-19
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		6e-19
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		7e-19
1lto_A	245	Human Alpha1-Tryptase Length = 245		1e-18
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		1e-18
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		2e-18
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		2e-18
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		2e-18
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		2e-18
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		3e-18
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		3e-18
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		4e-18
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		4e-18
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		5e-18
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		5e-18
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		6e-18
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		6e-18
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		6e-18
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		6e-18
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		6e-18
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		6e-18
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		6e-18
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		6e-18
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		7e-18
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		7e-18
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		7e-18
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		9e-18
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		9e-18
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		9e-18
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		1e-17
2b9l_A	394	Crystal Structure Of Prophenoloxidase Activating Fa		1e-17
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		1e-17
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		2e-17
2a31_A	223	Trypsin In Complex With Borate Length = 223		2e-17
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		2e-17
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		2e-17
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		2e-17
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		2e-17
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		2e-17
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		2e-17
1dpo_A	223	Structure Of Rat Trypsin Length = 223		2e-17
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		2e-17
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		2e-17
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		2e-17
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		2e-17
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		3e-17
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		3e-17
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		4e-17
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		5e-17
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		5e-17
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		5e-17
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		6e-17
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		7e-17
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		7e-17
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		7e-17
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		8e-17
3qk1_A	229	Crystal Structure Of Enterokinase-Like Trypsin Vari		8e-17
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		8e-17
2qy0_B	242	Active Dimeric Structure Of The Catalytic Domain Of		9e-17
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		1e-16
1g3b_A	228	Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Ba		1e-16
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		1e-16
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		1e-16
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		1e-16
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		1e-16
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		1e-16
1tgs_Z	229	Three-Dimensional Structure Of The Complex Between		1e-16
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		2e-16
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		2e-16
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		3e-16
1ntp_A	223	Use Of The Neutron Diffraction HD EXCHANGE TECHNIQU		3e-16
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		3e-16
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		3e-16
1md7_A	328	Monomeric Structure Of The Zymogen Of Complement Pr		3e-16
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		3e-16
1gj7_B	253	Engineering Inhibitors Highly Selective For The S1		4e-16
3ig6_B	253	Low Molecular Weigth Human Urokinase Type Plasminog		4e-16
1lmw_B	253	Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-A		4e-16
1gi8_B	245	A Novel Serine Protease Inhibition Motif Involving		5e-16
1owe_A	245	Substituted 2-Naphthamidine Inhibitors Of Urokinase		5e-16
1owd_A	245	Substituted 2-naphthamidine Inhibitors Of Urokinase		5e-16
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		5e-16
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		5e-16
1o5a_B	253	Dissecting And Designing Inhibitor Selectivity Dete		9e-16
2ftm_A	224	Crystal Structure Of A Bpti Variant (Cys38->ser) In		2e-15
1mtn_C	97	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		2e-15
1afq_C	96	Crystal Structure Of Bovine Gamma-Chymotrypsin Comp		2e-15
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		3e-15
1v2u_T	223	Benzamidine In Complex With Bovine Trypsin Varinat		4e-15
3plk_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		5e-15
1ept_C	98	Refined 1.8 Angstroms Resolution Crystal Structure		5e-15
2nwn_A	253	New Pharmacophore For Serine Protease Inhibition Re		5e-15
1v2s_T	223	Benzamidine In Complex With Bovine Trypsin Variant		6e-15
1fv9_A	245	Crystal Structure Of Human Microurokinase In Comple		6e-15
3pmj_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		6e-15
1ejn_A	253	Urokinase Plasminogen Activator B-Chain Inhibitor C		6e-15
3pwb_A	223	Bovine Trypsin Variant X(Tripleglu217ile227) In Com		7e-15
3uqv_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		7e-15
4fu7_A	246	Crystal Structure Of The Urokinase Length = 246		7e-15
3mwi_U	246	The Complex Crystal Structure Of Urokianse And 5-Ni		7e-15
1w0z_U	247	Urokinase Type Plasminogen Activator Length = 247		7e-15
1v2o_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		7e-15
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		7e-15
1v2q_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		8e-15
1v2n_T	223	Potent Factor Xa Inhibitor In Complex With Bovine T		8e-15
1v2j_T	223	Benzamidine In Complex With Bovine Trypsin Variant		9e-15
1v2k_T	223	Factor Xa Specific Inhibitor In Complex With Bovine		1e-14
2o8u_A	253	Crystal Structure And Binding Epitopes Of Urokinase		1e-14
2aip_A	231	Crystal Structure Of Native Protein C Activator Fro		2e-14
3uns_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		2e-14
4b1t_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		2e-14
4b2a_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		2e-14
1h9h_E	231	Complex Of Eeti-Ii With Porcine Trypsin Length = 23		3e-14
2eek_A	220	Crystal Structure Of Atlantic Cod Trypsin Complexed		3e-14
1uhb_B	98	Crystal Structure Of Porcine Alpha Trypsin Bound Wi		3e-14
3unq_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		3e-14
4b2c_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		4e-14
4b2b_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		4e-14
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		4e-14
3v0x_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		5e-14
3uwi_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		6e-14
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		6e-14
2ra3_A	224	Human Cationic Trypsin Complexed With Bovine Pancre		6e-14
2jet_C	99	Crystal Structure Of A Trypsin-Like Mutant (S189d,		9e-14
1trn_A	224	Crystal Structure Of Human Trypsin 1: Unexpected Ph		1e-13
1eai_A	240	Complex Of Ascaris Chymotrpsin/elastase Inhibitor W		1e-13
2est_E	240	Crystallographic Study Of The Binding Of A Trifluor		1e-13
1hax_B	240	Snapshots Of Serine Protease Catalysis: (A) Acyl-En		1e-13
2pks_C	102	Thrombin In Complex With Inhibitor Length = 102		2e-13
2hnt_F	105	Crystallographic Structure Of Human Gamma-Thrombin		2e-13
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		2e-13
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		3e-13
1kdq_B	99	Crystal Structure Analysis Of The Mutant S189d Rat		4e-13
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		4e-13
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		4e-13
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		4e-13
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		5e-13
1bbr_E	109	The Structure Of Residues 7-16 Of The A Alpha Chain		5e-13
1gdu_A	224	Fusarium Oxysporum Trypsin At Atomic Resolution Len		7e-13
1xvm_A	224	Trypsin From Fusarium Oxysporum- Room Temperature T		7e-13
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		8e-13
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		8e-13
1fon_A	240	Crystal Structure Of Bovine Procarboxypeptidase A-S		8e-13
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		1e-12
4dg4_A	224	Human Mesotrypsin-S39y Complexed With Bovine Pancre		1e-12
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		1e-12
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		1e-12
3i77_A	230	3599170-Loops Of Fxa In Sgt Length = 230		1e-12
1orf_A	234	The Oligomeric Structure Of Human Granzyme A Reveal		2e-12
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		2e-12
1op8_A	234	Crystal Structure Of Human Granzyme A Length = 234		2e-12
1ppz_A	224	Trypsin Complexes At Atomic And Ultra-High Resoluti		2e-12
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		3e-12
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		3e-12
1pyt_C	253	Ternary Complex Of Procarboxypeptidase A, Proprotei		4e-12
1elt_A	236	Structure Of Native Pancreatic Elastase From North		4e-12
3i78_A	229	3599170186220-Loops Of Fxa In Sgt Length = 229		6e-12
3beu_A	224	Na+-Dependent Allostery Mediates Coagulation Factor		7e-12
1ton_A	235	Rat Submaxillary Gland Serine Protease, Tonin. Stru		8e-12
2psx_A	227	Crystal Structure Of Human Kallikrein 5 In Complex		9e-12
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		1e-11
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		1e-11
2kai_B	152	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		1e-11
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		1e-11
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		1e-11
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		1e-11
1sgf_A	240	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		2e-11
3s9a_A	234	Russell's Viper Venom Serine Proteinase, Rvv-V (Clo		2e-11
1os8_A	223	Recombinant Streptomyces Griseus Trypsin Length = 2		2e-11
2fmj_A	222	220-Loop Mutant Of Streptomyces Griseus Trypsin Len		2e-11
1sgt_A	223	Refined Crystal Structure Of Streptomyces Griseus T		3e-11
4gso_A	232	Structure Of Jararacussin-I Length = 232		3e-11
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		3e-11
2xrc_A	565	Human Complement Factor I Length = 565		3e-11
1oss_A	223	T190p Streptomyces Griseus Trypsin In Complex With		5e-11
2zch_P	237	Crystal Structure Of Human Prostate Specific Antige		8e-11
2zgc_A	240	Crystal Structure Of Active Human Granzyme M Length		8e-11
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		1e-10
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		1e-10
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		1e-10
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		2e-10
1si5_H	240	Protease-Like Domain From 2-Chain Hepatocyte Growth		3e-10
1shy_A	234	The Crystal Structure Of Hgf Beta-Chain In Complex		3e-10
2zgj_A	240	Crystal Structure Of D86n-gzmm Complexed With Its O		3e-10
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		5e-10
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		5e-10
1mza_A	240	Crystal Structure Of Human Pro-Granzyme K Length =		5e-10
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		7e-10
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		1e-09
4f4o_C	347	Structure Of The Haptoglobin-Haemoglobin Complex Le		3e-09
1bqy_A	234	Plasminogen Activator (tsv-pa) From Snake Venom Len		1e-08
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		3e-08
2asu_B	234	Crystal Structure Of The Beta-Chain Of HgflMSP Leng		5e-08
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		2e-07
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		2e-07
1m9u_A	241	Crystal Structure Of Earthworm Fibrinolytic Enzyme		3e-07
4e7n_A	238	Crystal Structure Of Ahv_tl-I, A Glycosylated Snake		4e-07
2bdg_A	223	Human Kallikrein 4 Complex With Nickel And P-aminob		5e-07
3s69_A	234	Crystal Structure Of Saxthrombin Length = 234		2e-06
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		2e-06
3rp2_A	224	The Structure Of Rat Mast Cell Protease Ii At 1.9-A		2e-06
3g01_A	227	Structure Of Grc Mutant E192rE193G Length = 227		4e-06
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		6e-06
1dle_A	298	Factor B Serine Protease Domain Length = 298		7e-06
1rrk_A	497	Crystal Structure Analysis Of The Bb Segment Of Fac		7e-06
2win_I	507	C3 Convertase (C3bbb) Stabilized By Scin Length = 5		7e-06
3hrz_D	741	Cobra Venom Factor (Cvf) In Complex With Human Fact		7e-06
2xwb_F	732	Crystal Structure Of Complement C3b In Complex With		7e-06
2ok5_A	752	Human Complement Factor B Length = 752		8e-06
1fi8_A	228	Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Ie		9e-06
1fq3_A	227	Crystal Structure Of Human Granzyme B Length = 227		1e-05
1iau_A	227	Human Granzyme B In Complex With Ac-Iepd-Cho Length		2e-05
3fzz_A	227	Structure Of Grc Length = 227		2e-05
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		3e-05
1pjp_A	226	The 2.2 A Crystal Structure Of Human Chymase In Com		3e-05
3n7o_A	226	X-Ray Structure Of Human Chymase In Complex With Sm		4e-05
2odp_A	509	Complement Component C2a, The Catalytic Fragment Of		5e-05
1klt_A	226	Crystal Structure Of Pmsf-Treated Human Chymase At		5e-05
2i6q_A	517	Complement Component C2a Length = 517		5e-05
1bbr_H	150	The Structure Of Residues 7-16 Of The A Alpha Chain		5e-05
4afq_A	226	Human Chymase - Fynomer Complex Length = 226		5e-05
1nn6_A	228	Human Pro-Chymase Length = 228		5e-05
2hnt_E	81	Crystallographic Structure Of Human Gamma-Thrombin		1e-04
1bhx_B	147	X-Ray Structure Of The Complex Of Human Alpha Throm		2e-04
1gvz_A	237	Prostate Specific Antigen (Psa) From Stallion Semin		2e-04
1kyn_B	235	Cathepsin-G Length = 235		3e-04
1au8_A	224	Human Cathepsin G Length = 224		4e-04

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score =  121 bits (304), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/167 (38%), Positives = 92/167 (55%), Gaps = 12/167 (7%)
Query: 31  FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXX 90
           FGV++I +H  +K       YD+A+L+L+  V Y     PICLP KG+            
Sbjct: 461 FGVQEIIIHDQYKMAESG--YDIALLKLETTVNYTDSQRPICLPSKGD---RNVIYTDCW 515
Query: 91  XXXXXXSRLRPK---TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSC 147
                  +LR K   TLQ   +P++ N +C++ ++ + I      +M+CAGYR G KD+C
Sbjct: 516 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICAGYREGGKDAC 571
Query: 148 QGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           +GDSGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct: 572 KGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 618

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 92/177 (51%), Gaps = 6/177 (3%)
Query: 18  VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 77
           ++N A        FGV++I +H  +K       YD+A+L+L+  V Y     PICLP KG
Sbjct: 61  ILNQAEIKEDTSFFGVQEIIIHDQYKMAESG--YDIALLKLETTVNYADSQRPICLPSKG 118
Query: 78  EDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCA 137
           +                        TLQ   +P++ N +C++ ++ + I      +M+CA
Sbjct: 119 DRNVIYTDCWVTGWGYRALRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICA 174
Query: 138 GYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GYR G KD+C+GDSGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct: 175 GYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 92/177 (51%), Gaps = 6/177 (3%)
Query: 18  VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 77
           ++N A        FGV++I +H  +K       YD+A+L+L+  V Y     PICLP KG
Sbjct: 61  ILNQAEIAEDTSFFGVQEIIIHDQYKMAESG--YDIALLKLETTVNYADSQRPICLPSKG 118
Query: 78  EDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCA 137
           +                        TLQ   +P++ N +C++ ++ + I      +M+CA
Sbjct: 119 DRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICA 174
Query: 138 GYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GYR G KD+C+GDSGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct: 175 GYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/177 (35%), Positives = 92/177 (51%), Gaps = 6/177 (3%)
Query: 18  VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 77
           ++N A        FGV++I +H  +K       YD+A+L+L+  V Y     PICLP KG
Sbjct: 61  ILNQAEIKEDTSFFGVQEIIIHDQYKMAESG--YDIALLKLETTVNYADSQRPICLPSKG 118
Query: 78  EDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCA 137
           +                        TLQ   +P++ N +C++ ++ + I      +M+CA
Sbjct: 119 DRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICA 174
Query: 138 GYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GYR G KD+C+GDSGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct: 175 GYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 88/164 (53%), Gaps = 6/164 (3%)
Query: 31  FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXX 90
           FGV++I +H  +K       YD+A+L+L+  V Y     PICLP KG+            
Sbjct: 74  FGVQEIIIHDQYKMAESG--YDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTG 131
Query: 91  XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGD 150
                       TLQ   +P++ N +C++ ++ + I      +M+CAGYR G KD+C+GD
Sbjct: 132 WGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICAGYREGGKDACKGD 187
Query: 151 SGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           SGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score =  116 bits (291), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 61/164 (37%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Query: 31  FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXX 90
           FGV++I +H  +K       YD+A+L+L+  V Y     PI LP KGE            
Sbjct: 74  FGVQEIIIHDQYKMAESG--YDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTG 131
Query: 91  XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGD 150
                       TLQ   +P++ N +C++ ++ + I      +M+CAGYR G KD+C+GD
Sbjct: 132 WGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICAGYREGGKDACKGD 187
Query: 151 SGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           SGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 18  VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 77
           ++N A        FGV++I +H  +K       YD+A+L+L+  V Y     PI LP KG
Sbjct: 61  ILNQAEIAEDTSFFGVQEIIIHDQYKMAESG--YDIALLKLETTVNYADSQRPISLPSKG 118
Query: 78  EDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCA 137
           +                        TLQ   +P++ N +C++ ++ + I      +M+CA
Sbjct: 119 DRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICA 174
Query: 138 GYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GYR G KD+C+GDSGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct: 175 GYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 18  VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 77
           ++N A        FGV++I +H  +K       YD+A+L+L+  V Y     PI LP KG
Sbjct: 61  ILNQAEIAEDTSFFGVQEIIIHDQYKMAESG--YDIALLKLETTVNYADSQRPISLPSKG 118
Query: 78  EDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCA 137
           +                        TLQ   +P++ N +C++ ++ + I      +M+CA
Sbjct: 119 DRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICA 174
Query: 138 GYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GYR G KD+C+GDSGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct: 175 GYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 91/177 (51%), Gaps = 6/177 (3%)
Query: 18  VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG 77
           ++N A        FGV++I +H  +K       YD+A+L+L+  V Y     PI LP KG
Sbjct: 61  ILNQAEIKEDTSFFGVQEIIIHDQYKMAESG--YDIALLKLETTVNYADSQRPISLPSKG 118
Query: 78  EDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCA 137
           +                        TLQ   +P++ N +C++ ++ + I      +M+CA
Sbjct: 119 DRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICA 174
Query: 138 GYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GYR G KD+C+GDSGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct: 175 GYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Query: 31  FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXX 90
           FGV++I +H  +K       YD+A+L+L+  V Y     PI LP KG+            
Sbjct: 74  FGVQEIIIHDQYKMAESG--YDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTG 131
Query: 91  XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGD 150
                       TLQ   +P++ N +C++ ++ + I      +M+CAGYR G KD+C+GD
Sbjct: 132 WGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICAGYREGGKDACKGD 187
Query: 151 SGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           SGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/164 (36%), Positives = 87/164 (53%), Gaps = 6/164 (3%)
Query: 31  FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXX 90
           FGV++I +H  +K       YD+A+L+L+  V Y     PI LP KG+            
Sbjct: 74  FGVQEIIIHDQYKMAESG--YDIALLKLETTVNYTDSQRPISLPSKGDRNVIYTDCWVTG 131
Query: 91  XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGD 150
                       TLQ   +P++ N +C++ ++ + I      +M+CAGYR G KD+C+GD
Sbjct: 132 WGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKIT----HKMICAGYREGGKDACKGD 187
Query: 151 SGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           SGGPL  +    W L+GI S G  CAQ+ +PG+Y  V   VDWI
Sbjct: 188 SGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWI 231

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  113 bits (282), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 91/162 (56%), Gaps = 6/162 (3%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
           +++I +H  +K +     +D+A+++L  P++Y     PI LP KG+              
Sbjct: 76  IKEIIIHQNYKVS--EGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWG 133
Query: 93  XXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
                      LQ V++P++ N +C++ ++    +  I   M+CAGY+ G KD+C+GDSG
Sbjct: 134 FSKEKGEIQNILQKVNIPLVTNEECQKRYQ----DYKITQRMVCAGYKEGGKDACKGDSG 189
Query: 153 GPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GPL+ +  G W L+GI S G  CA++ QPG+Y +VA  +DWI
Sbjct: 190 GPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWI 231

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/162 (38%), Positives = 86/162 (53%), Gaps = 8/162 (4%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
           V KI +H  F +    +  D+++L+L   + +  ++API LPE+G               
Sbjct: 79  VSKIILHENFDYNLLDN--DISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTT 136
Query: 93  XXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
               +   P  LQ V VP++ +  C   + ++     I D M+CAG   G KDSCQGDSG
Sbjct: 137 SEGGNT--PDVLQKVTVPLVSDEDCRADYGAD----EILDSMICAGVPEGGKDSCQGDSG 190
Query: 153 GPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GPL    TG  +L GIVS GY CA+ G PG+Y  V+Y VDWI
Sbjct: 191 GPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWI 232

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  112 bits (280), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 90/162 (55%), Gaps = 6/162 (3%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
           +++I +H  +K +     +D+A+++L  P+ Y     PI LP KG+              
Sbjct: 76  IKEIIIHQNYKVS--EGNHDIALIKLQAPLNYTEFQKPISLPSKGDTSTIYTNCWVTGWG 133
Query: 93  XXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
                      LQ V++P++ N +C++ ++    +  I   M+CAGY+ G KD+C+GDSG
Sbjct: 134 FSKEKGEIQNILQKVNIPLVTNEECQKRYQ----DYKITQRMVCAGYKEGGKDACKGDSG 189
Query: 153 GPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GPL+ +  G W L+GI S G  CA++ QPG+Y +VA  +DWI
Sbjct: 190 GPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWI 231

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 84/167 (50%), Gaps = 6/167 (3%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
           + +I ++P++    +    D+A++ L+  V Y  +I PICLPE+ +              
Sbjct: 75  IDQIVINPHY--NKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWG 132
Query: 93  XXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
                      LQ  DVP++ N +C++      I     + M+CAGY  G  DSCQGDSG
Sbjct: 133 ALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNIT----ENMVCAGYEAGGVDSCQGDSG 188
Query: 153 GPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           GPLM +   RW L G+ S GY CA   +PG+Y RV    +WI   ++
Sbjct: 189 GPLMCQENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFLH 235

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score =  107 bits (268), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/167 (33%), Positives = 86/167 (51%), Gaps = 6/167 (3%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
           + +I ++P++    + +  D+A++ L+  V Y  +I PI LPE+ +              
Sbjct: 75  IDEIVINPHYNRRRKDN--DIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWG 132
Query: 93  XXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
                      LQ  DVP++ N +C++      I     + M+CAGY  G  DSCQGDSG
Sbjct: 133 TVVYQGTTADILQEADVPLLSNERCQQQMPEYNIT----ENMICAGYEEGGIDSCQGDSG 188
Query: 153 GPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           GPLM +   RWFL G+ S GY CA   +PG+Y RV+   +WI   ++
Sbjct: 189 GPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFLH 235

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 82/160 (51%), Gaps = 3/160 (1%)
Query: 44  FTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKT 103
           + P    +D+A+LRL +PV    H+ P+CLPE+                       R  T
Sbjct: 82  YVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGAT 141
Query: 104 ---LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
              LQ ++VP +  + C +  +  G +  I + M CAGY  G+KDSC+GDSGGP      
Sbjct: 142 ALVLQVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYR 201
Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
           G W+L GIVS G  CA  G  G+Y RV+  ++W+  +M +
Sbjct: 202 GTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRS 241

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/188 (35%), Positives = 92/188 (48%), Gaps = 9/188 (4%)
Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHI 68
           ++ V  G+Y      EP       +R I  H Y   T     +D+A+L LD P+    ++
Sbjct: 48  KITVVAGEYNTEET-EPTEQRRNVIRAIPHHSY-NATVNKYSHDIALLELDEPLTLNSYV 105
Query: 69  APICLPEKG-EDXXXXXXXXXXXXXXXXXSRLRPKT-LQAVDVPIIDNRQCERWHKSNGI 126
            PIC+ +K   +                 +R R  T LQ + VP++D   C R  K    
Sbjct: 106 TPICIADKEYTNIFLKFGSGYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRSTK---- 161
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              IY  M CAG+  G KDSCQGDSGGP + E  G  FL GI+S G  CA +G+ GIY +
Sbjct: 162 -FTIYSNMFCAGFHEGGKDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAVKGKYGIYTK 220
Query: 187 VAYTVDWI 194
           V+  V+WI
Sbjct: 221 VSRYVNWI 228

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score =  103 bits (257), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 81/160 (50%), Gaps = 3/160 (1%)
Query: 44  FTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKT 103
           + P    +D+A+LRL +PV    H+ P+CLPE+                       R  T
Sbjct: 82  YVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGAT 141
Query: 104 ---LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
              L  ++VP +  + C +  +  G +  I + M CAGY  G+KDSC+GDSGGP      
Sbjct: 142 ALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYR 201
Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
           G W+L GIVS G  CA  G  G+Y RV+  ++W+  +M +
Sbjct: 202 GTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRS 241

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score =  103 bits (256), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 97/197 (49%), Gaps = 12/197 (6%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
           A++ +V +GD   N+A E        V  +  H   +FT +   +D+AVLRL  P+ +  
Sbjct: 47  AKRFKVRVGDR--NTAAEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRM 102
Query: 67  HIAPICLPEK--GEDXXXXXXXXXXXXXXXXXSRLRPKT-LQAVDVPIIDNRQCERWHKS 123
           ++AP CLPE+   E                   + R  T L+ ++VP +D   C+     
Sbjct: 103 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL---- 158
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGI 183
              + +I   M CAGY    +D+CQGDSGGP +      +F+ GIVS G  CA++G+ GI
Sbjct: 159 -SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGI 217
Query: 184 YHRVAYTVDWISYIMNT 200
           Y +V   + WI   M T
Sbjct: 218 YTKVTAFLKWIDRSMKT 234

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+PG Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKPGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score =  100 bits (250), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/172 (31%), Positives = 89/172 (51%), Gaps = 11/172 (6%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++                
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 93  XXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR---GGAKDSCQG 149
                + +P  LQ V++PI++   C+     +   + I D M CAGY+   G   D+C+G
Sbjct: 140 GWGNLKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEG 194
Query: 150 DSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           DSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  +++
Sbjct: 195 DSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 246

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 12/197 (6%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
           A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ +  
Sbjct: 62  AKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRM 117
Query: 67  HIAPICLPEK--GEDXXXXXXXXXXXXXXXXXSRLRPKT-LQAVDVPIIDNRQCERWHKS 123
           ++AP CLPE+   E                   + R  T L+ ++VP +D   C+     
Sbjct: 118 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL---- 173
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGI 183
              + +I   M CAGY    +D+CQGDSGGP +      +F+ GIVS G  CA++G+ GI
Sbjct: 174 -SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGI 232
Query: 184 YHRVAYTVDWISYIMNT 200
           Y +V   + WI   M T
Sbjct: 233 YTKVTAFLKWIDRSMKT 249

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 92/181 (50%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  CA++G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCARKGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score =  100 bits (249), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 84/166 (50%), Gaps = 15/166 (9%)
Query: 36  INVHPYFKFTPQADRY--DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXX 93
           I + P+  +    ++Y  D+A+L LD P+    ++ PIC+ +K                 
Sbjct: 71  IRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADK---EYTNIFLKFGSGYV 127
Query: 94  XXXSRLRPK-----TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
               R+  K      LQ + VP++D   C R  K       IY+ M CAG+  G +DSCQ
Sbjct: 128 SGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTK-----FTIYNNMFCAGFHEGGRDSCQ 182
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GDSGGP + E  G  FL GI+S G  CA +G+ GIY +V+  V+WI
Sbjct: 183 GDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 12/197 (6%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
           A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ +  
Sbjct: 47  AKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRM 102
Query: 67  HIAPICLPEK--GEDXXXXXXXXXXXXXXXXXSRLRPKT-LQAVDVPIIDNRQCERWHKS 123
           ++AP CLPE+   E                   + R  T L+ ++VP +D   C+     
Sbjct: 103 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL---- 158
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGI 183
              + +I   M CAGY    +D+CQGDSGGP +      +F+ GIVS G  CA++G+ GI
Sbjct: 159 -SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGI 217
Query: 184 YHRVAYTVDWISYIMNT 200
           Y +V   + WI   M T
Sbjct: 218 YTKVTAFLKWIDRSMKT 234

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 12/197 (6%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
           A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ +  
Sbjct: 47  AKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRM 102
Query: 67  HIAPICLPEK--GEDXXXXXXXXXXXXXXXXXSRLRPKT-LQAVDVPIIDNRQCERWHKS 123
           ++AP CLPE+   E                   + R  T L+ ++VP +D   C+     
Sbjct: 103 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL---- 158
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGI 183
              + +I   M CAGY    +D+CQGDSGGP +      +F+ GIVS G  CA++G+ GI
Sbjct: 159 -SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGI 217
Query: 184 YHRVAYTVDWISYIMNT 200
           Y +V   + WI   M T
Sbjct: 218 YTKVTAFLKWIDRSMKT 234

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 12/197 (6%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
           A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ +  
Sbjct: 47  AKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRM 102
Query: 67  HIAPICLPEK--GEDXXXXXXXXXXXXXXXXXSRLRPKT-LQAVDVPIIDNRQCERWHKS 123
           ++AP CLPE+   E                   + R  T L+ ++VP +D   C+     
Sbjct: 103 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL---- 158
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGI 183
              + +I   M CAGY    +D+CQGDSGGP +      +F+ GIVS G  CA++G+ GI
Sbjct: 159 -SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGI 217
Query: 184 YHRVAYTVDWISYIMNT 200
           Y +V   + WI   M T
Sbjct: 218 YTKVTAFLKWIDRSMKT 234

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 12/197 (6%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
           A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ +  
Sbjct: 47  AKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRM 102
Query: 67  HIAPICLPEK--GEDXXXXXXXXXXXXXXXXXSRLRPKT-LQAVDVPIIDNRQCERWHKS 123
           ++AP CLPE+   E                   + R  T L+ ++VP +D   C+     
Sbjct: 103 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL---- 158
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGI 183
              + +I   M CAGY    +D+CQGDSGGP +      +F+ GIVS G  CA++G+ GI
Sbjct: 159 -SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGI 217
Query: 184 YHRVAYTVDWISYIMNT 200
           Y +V   + WI   M T
Sbjct: 218 YTKVTAFLKWIDRSMKT 234

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score =  100 bits (248), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 12/197 (6%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
           A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ +  
Sbjct: 47  AKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRM 102
Query: 67  HIAPICLPEK--GEDXXXXXXXXXXXXXXXXXSRLRPKT-LQAVDVPIIDNRQCERWHKS 123
           ++AP CLPE+   E                   + R  T L+ ++VP +D   C+     
Sbjct: 103 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL---- 158
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGI 183
              + +I   M CAGY    +D+CQGDSGGP +      +F+ GIVS G  CA++G+ GI
Sbjct: 159 -SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGI 217
Query: 184 YHRVAYTVDWISYIMNT 200
           Y +V   + WI   M T
Sbjct: 218 YTKVTAFLKWIDRSMKT 234

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 96/197 (48%), Gaps = 12/197 (6%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
           A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ +  
Sbjct: 47  AKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRM 102
Query: 67  HIAPICLPEK--GEDXXXXXXXXXXXXXXXXXSRLRPKT-LQAVDVPIIDNRQCERWHKS 123
           ++AP CLPE+   E                   + R  T L+ ++VP +D   C+     
Sbjct: 103 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL---- 158
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGI 183
              + +I   M CAGY    +D+CQGDSGGP +      +F+ GIVS G  CA++G+ GI
Sbjct: 159 -SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGI 217
Query: 184 YHRVAYTVDWISYIMNT 200
           Y +V   + WI   M T
Sbjct: 218 YTKVTAFLKWIDRSMKT 234

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 99.8 bits (247), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVSAG  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVSAG  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 84/166 (50%), Gaps = 15/166 (9%)
Query: 36  INVHPYFKFTPQADRY--DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXX 93
           I + P+  +    ++Y  D+A+L LD P+    ++ PIC+ +K                 
Sbjct: 71  IRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADK---EYTNIFLKFGSGYV 127
Query: 94  XXXSRLRPK-----TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
               R+  K      LQ + VP++D   C R  K       IY+ M CAG+  G +DSCQ
Sbjct: 128 SGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTK-----FTIYNNMFCAGFHEGGRDSCQ 182
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GD+GGP + E  G  FL GI+S G  CA +G+ GIY +V+  V+WI
Sbjct: 183 GDAGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 9/189 (4%)
Query: 11  QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAP 70
           +V LG + ++S  E     T   + I  HP   +  +  + D+A+L+L RP+ +  +I P
Sbjct: 53  EVKLGAHQLDSYSEDAKVSTL--KDIIPHP--SYLQEGSQGDIALLQLSRPITFSRYIRP 108
Query: 71  ICLPEKGEDXXXXXXXXXXX--XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
           I LP                        S L PK LQ ++VP+I    C   +  +    
Sbjct: 109 ISLPAANASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPE 168
Query: 129 ---VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
               + ++M+CAGY  G KD+CQGDSGGPL     G W+L GIVS G +C  + +PG+Y 
Sbjct: 169 EPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYT 228
Query: 186 RVAYTVDWI 194
             +    WI
Sbjct: 229 LASSYASWI 237

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 16/199 (8%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
           A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ +  
Sbjct: 47  AKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRM 102
Query: 67  HIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPK-----TLQAVDVPIIDNRQCERWH 121
           ++AP CLPE+  D                  R   K      L+ ++VP +D   C+   
Sbjct: 103 NVAPACLPER--DWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKL-- 158
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
                + +I   M CAGY    +D+CQGDSGGP +      +F+ GIVS G  CA++G+ 
Sbjct: 159 ---SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKY 215
Query: 182 GIYHRVAYTVDWISYIMNT 200
           GIY +V   + WI   M T
Sbjct: 216 GIYTKVTAFLKWIDRSMKT 234

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 12/197 (6%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
           A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ +  
Sbjct: 47  AKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRM 102
Query: 67  HIAPICLPEK--GEDXXXXXXXXXXXXXXXXXSRLRPKT-LQAVDVPIIDNRQCERWHKS 123
           ++AP CLPE+   E                   + R  T L+ ++VP +D   C+     
Sbjct: 103 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL---- 158
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGI 183
              + +I   M CAGY    +D+CQGD+GGP +      +F+ GIVS G  CA++G+ GI
Sbjct: 159 -SSSFIITQNMFCAGYDTKQEDACQGDAGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGI 217
Query: 184 YHRVAYTVDWISYIMNT 200
           Y +V   + WI   M T
Sbjct: 218 YTKVTAFLKWIDRSMKT 234

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/162 (33%), Positives = 82/162 (50%), Gaps = 12/162 (7%)
Query: 43  KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPK 102
           +F  +   +D+AVLRL  P+++  ++AP CLPEK  D                  R   K
Sbjct: 79  RFVKETYDFDIAVLRLKTPIRFRRNVAPACLPEK--DWAEATLMTQKTGIVSGFGRTHEK 136
Query: 103 -----TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM 157
                TL+ ++VP +D   C+        +  I   M CAGY    +D+CQGDSGGP + 
Sbjct: 137 GRLSSTLKMLEVPYVDRSTCKL-----SSSFTITPNMFCAGYDTQPEDACQGDSGGPHVT 191
Query: 158 ERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
                +F+ GIVS G  CA++G+ G+Y +V+  + WI  IM 
Sbjct: 192 RFKDTYFVTGIVSWGEGCARKGKFGVYTKVSNFLKWIDKIMK 233

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 95/199 (47%), Gaps = 16/199 (8%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
           A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ +  
Sbjct: 47  AKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRM 102
Query: 67  HIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPK-----TLQAVDVPIIDNRQCERWH 121
           ++AP CLPE+  D                  R   K      L+ ++VP +D   C+   
Sbjct: 103 NVAPACLPER--DWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKL-- 158
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
                + +I   M CAGY    +D+CQGDSGGP +      +F+ GIVS G  CA++G+ 
Sbjct: 159 ---SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKY 215
Query: 182 GIYHRVAYTVDWISYIMNT 200
           GIY +V   + WI   M T
Sbjct: 216 GIYTKVTAFLKWIDRSMKT 234

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 9/189 (4%)
Query: 11  QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAP 70
           +V LG + ++S  E     T   + I  HP   +  +  + D+A+L+L RP+ +  +I P
Sbjct: 53  EVKLGAHQLDSYSEDAKVSTL--KDIIPHP--SYLQEGSQGDIALLQLSRPITFSRYIRP 108
Query: 71  ICLP--EKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
           I LP  +                     S L PK LQ ++VP+I    C   +  +    
Sbjct: 109 ISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPE 168
Query: 129 ---VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
               + ++M+CAGY  G KD+CQGDSGGPL     G W+L GIVS G +C  + +PG+Y 
Sbjct: 169 EPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYT 228
Query: 186 RVAYTVDWI 194
             +    WI
Sbjct: 229 LASSYASWI 237

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 92/189 (48%), Gaps = 9/189 (4%)
Query: 11  QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAP 70
           +V LG + ++S  E     T   + I  HP   +  +  + D+A+L+L RP+ +  +I P
Sbjct: 53  EVKLGAHQLDSYSEDAKVSTL--KDIIPHP--SYLQEGSQGDIALLQLSRPITFSRYIRP 108
Query: 71  ICLP--EKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
           I LP  +                     S L PK LQ ++VP+I    C   +  +    
Sbjct: 109 ISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPE 168
Query: 129 ---VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
               + ++M+CAGY  G KD+CQGDSGGPL     G W+L GIVS G +C  + +PG+Y 
Sbjct: 169 EPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYT 228
Query: 186 RVAYTVDWI 194
             +    WI
Sbjct: 229 LASSYASWI 237

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 20/179 (11%)
Query: 35  KINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXXXX 85
           KI +HP + +    DR D+A+L+L RP++   +I P+CLP+K         G        
Sbjct: 132 KIYIHPRYNWKENLDR-DIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGW 190
Query: 86  XXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR---GG 142
                      + ++P  LQ V++P+++   C+         + I D M CAGY+   G 
Sbjct: 191 GNRRETWTTSVAEVQPSVLQVVNLPLVERPVCK-----ASTRIRITDNMFCAGYKPGEGK 245
Query: 143 AKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
             D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  +++
Sbjct: 246 RGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 304

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 20/179 (11%)
Query: 35  KINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXXXX 85
           KI +HP + +    DR D+A+L+L RP++   +I P+CLP+K         G        
Sbjct: 83  KIYIHPRYNWKENLDR-DIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGW 141
Query: 86  XXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR---GG 142
                      + ++P  LQ V++P+++   C+         + I D M CAGY+   G 
Sbjct: 142 GNRRETWTTSVAEVQPSVLQVVNLPLVERPVCK-----ASTRIRITDNMFCAGYKPGEGK 196
Query: 143 AKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
             D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  +++
Sbjct: 197 RGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 20/179 (11%)
Query: 35  KINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXXXX 85
           KI +HP + +    DR D+A+L+L RP++   +I P+CLP+K         G        
Sbjct: 83  KIYIHPRYNWKENLDR-DIALLKLKRPIELSDYIHPVCLPDKQTAAKLLHAGFKGRVTGW 141
Query: 86  XXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR---GG 142
                      + ++P  LQ V++P+++   C+         + I D M CAGY+   G 
Sbjct: 142 GNRRETWTTSVAEVQPSVLQVVNLPLVERPVCK-----ASTRIRITDNMFCAGYKPGEGK 196
Query: 143 AKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
             D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  +++
Sbjct: 197 RGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTTNVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+CQGDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACQGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 95/196 (48%), Gaps = 12/196 (6%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
           A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ +  
Sbjct: 47  AKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFRM 102
Query: 67  HIAPICLPEK--GEDXXXXXXXXXXXXXXXXXSRLRPKT-LQAVDVPIIDNRQCERWHKS 123
           ++AP CLPE+   E                   + R  T L+ ++VP +D   C+     
Sbjct: 103 NVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL---- 158
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGI 183
              + +I   M CAGY    +D+CQGDSGGP +      +F+ GIVS G  CA++G+ GI
Sbjct: 159 -SSSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGI 217
Query: 184 YHRVAYTVDWISYIMN 199
           Y +V   + WI   M 
Sbjct: 218 YTKVTAFLKWIDRSMK 233

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 13/174 (7%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLP--EKGEDXXXXXXXXXXX 90
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP  E               
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 91  XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR---GGAKDSC 147
                  + +P  LQ V++PI++   C+     +   + I D M CAGY+   G   D+C
Sbjct: 140 GWGNLKEKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC 194
Query: 148 QGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           +GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  +++
Sbjct: 195 EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 248

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI VHP + +    DR D+A+L+L +PV +  +I P+CLP+K         G      
Sbjct: 81  LEKIYVHPRYNWRENLDR-DIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                        + ++P  LQ V++PI++   C+         + I D M CAG++   
Sbjct: 140 GWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCK-----ASTRIRITDNMFCAGFKVND 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
               D+C+GDSGGP +M+     RW+ +GIVSAG  C ++G+ G Y  V     WI  ++
Sbjct: 195 TKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRKGKYGFYTHVFRLKRWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 92/170 (54%), Gaps = 10/170 (5%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXX-XXXXXX 91
           V +I VHP F +T Q    D+A+L L+ PV+   H+  + LP   E              
Sbjct: 74  VSRIIVHPQF-YTAQIGA-DIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWG 131
Query: 92  XXXXXSRLRPK-TLQAVDVPIIDNRQCE-RWHKS--NGINV-VIYDEMMCAGYRGGAKDS 146
                 RL P   L+ V VPI++N  C+ ++H     G +V ++ D+M+CAG     +DS
Sbjct: 132 DVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDS 189
Query: 147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISY 196
           CQGDSGGPL+ +  G W   G+VS G  CAQ  +PGIY RV Y +DWI +
Sbjct: 190 CQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 82/164 (50%), Gaps = 10/164 (6%)
Query: 33  VRKINVHPYFK-FTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXX 91
           +++I  HP+F  FT     YD+A+L L++P +Y   + PICLP+                
Sbjct: 80  LKRIISHPFFNDFTFD---YDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGW 136
Query: 92  XXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDS 151
                       LQ  ++ +I+   CE     N +   I   MMC G+  G  DSCQGDS
Sbjct: 137 GHTQYGGTGALILQKGEIRVINQTTCE-----NLLPQQITPRMMCVGFLSGGVDSCQGDS 191
Query: 152 GGPLM-MERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GGPL  +E  GR F  G+VS G  CAQ+ +PG+Y R+    DWI
Sbjct: 192 GGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 92/170 (54%), Gaps = 10/170 (5%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXX-XXXXXX 91
           V +I VHP F +T Q    D+A+L L+ PV+   H+  + LP   E              
Sbjct: 74  VSRIIVHPQF-YTAQIGA-DIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWG 131
Query: 92  XXXXXSRLRPK-TLQAVDVPIIDNRQCE-RWHKS--NGINV-VIYDEMMCAGYRGGAKDS 146
                 RL P   L+ V VPI++N  C+ ++H     G +V ++ D+M+CAG     +DS
Sbjct: 132 DVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDS 189
Query: 147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISY 196
           CQGDSGGPL+ +  G W   G+VS G  CAQ  +PGIY RV Y +DWI +
Sbjct: 190 CQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score = 97.8 bits (242), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 92/170 (54%), Gaps = 10/170 (5%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXX-XXXXXX 91
           V +I VHP F +T Q    D+A+L L+ PV+   H+  + LP   E              
Sbjct: 74  VSRIIVHPQF-YTAQIGA-DIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWG 131
Query: 92  XXXXXSRLRPK-TLQAVDVPIIDNRQCE-RWHKS--NGINV-VIYDEMMCAGYRGGAKDS 146
                 RL P   L+ V VPI++N  C+ ++H     G +V ++ D+M+CAG     +DS
Sbjct: 132 DVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDS 189
Query: 147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISY 196
           CQGDSGGPL+ +  G W   G+VS G  CAQ  +PGIY RV Y +DWI +
Sbjct: 190 CQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKIGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 36  INVHPYFKFTPQADRY--DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXX 93
           I + P+  F    + Y  D+A+L LD P+    ++ PIC+ +K                 
Sbjct: 71  IRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADK---EYTNIFLKFGSGYV 127
Query: 94  XXXSRLRPK-----TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
               R+  K      LQ + VP++D   C R  K       I + M CAG+  G +DSCQ
Sbjct: 128 SGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTK-----FTITNNMFCAGFHEGGRDSCQ 182
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GDSGGP + E  G  FL GI+S G  CA +G+ GIY +V+  V+WI
Sbjct: 183 GDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 36  INVHPYFKFTPQADRY--DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXX 93
           I + P+  F    + Y  D+A+L LD P+    ++ PIC+ +K                 
Sbjct: 71  IRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADK---EYTNIFLKFGSGYV 127
Query: 94  XXXSRLRPK-----TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
               R+  K      LQ + VP++D   C R  K       I + M CAG+  G +DSCQ
Sbjct: 128 SGWGRVFHKGRAALVLQYLRVPLVDRATCLRSTK-----FTITNNMFCAGFHEGGRDSCQ 182
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GDSGGP + E  G  FL GI+S G  CA +G+ GIY +V+  V+WI
Sbjct: 183 GDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGKGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKFGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 117 LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 175
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 176 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 230
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 231 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 290
Query: 199 N 199
           +
Sbjct: 291 D 291

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 113 LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 171
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 172 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 226
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 227 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 286
Query: 199 N 199
           +
Sbjct: 287 D 287

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 246 LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 304
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 305 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 359
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 360 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 419
Query: 199 N 199
           +
Sbjct: 420 D 420

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 111 LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 169
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 170 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 224
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 225 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 284
Query: 199 N 199
           +
Sbjct: 285 D 285

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 111 LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 169
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 170 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 224
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 225 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 284
Query: 199 N 199
           +
Sbjct: 285 D 285

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 113 LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 171
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 172 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 226
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 227 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 286
Query: 199 N 199
           +
Sbjct: 287 D 287

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 33  VRKINVHPYFK-FTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXX 91
           +++I  HP+F  FT     YD+A+L L++P +Y   + PICLP+                
Sbjct: 80  LKRIISHPFFNDFTFD---YDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGW 136
Query: 92  XXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDS 151
                       LQ  ++ +I    CE     N +   I   MMC G+  G  DSCQGDS
Sbjct: 137 GHTQYGGTGALILQKGEIRVIQQTTCE-----NLLPQQITPRMMCVGFLSGGVDSCQGDS 191
Query: 152 GGPLM-MERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GGPL  +E  GR F  G+VS G  CAQ+ +PG+Y R+    DWI
Sbjct: 192 GGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 117 LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 175
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 176 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 230
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 231 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 290
Query: 199 N 199
           +
Sbjct: 291 D 291

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 110 LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 168
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 169 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 223
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 224 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 283
Query: 199 N 199
           +
Sbjct: 284 D 284

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 111 LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 169
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 170 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 224
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 225 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 284
Query: 199 N 199
           +
Sbjct: 285 D 285

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 111 LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 169
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 170 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 224
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 225 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 284
Query: 199 N 199
           +
Sbjct: 285 D 285

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 89/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C   G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCRDDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLP--EKGEDXXXXXXXXXXX 90
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP  E               
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 91  XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR---GGAKDSC 147
                    +P  LQ V++PI++   C+     +   + I D M CAGY+   G   D+C
Sbjct: 140 GWGNLKETGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC 194
Query: 148 QGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           +GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  +++
Sbjct: 195 EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 248

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGPLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 97.1 bits (240), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 87/174 (50%), Gaps = 13/174 (7%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLP--EKGEDXXXXXXXXXXX 90
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP  E               
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 91  XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR---GGAKDSC 147
                    +P  LQ V++PI++   C+     +   + I D M CAGY+   G   D+C
Sbjct: 140 GWGNLKETGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDAC 194
Query: 148 QGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           +GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  +++
Sbjct: 195 EGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 248

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 130 LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 188
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 189 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 243
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GD+GGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 244 GKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 303
Query: 199 N 199
           +
Sbjct: 304 D 304

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 96.3 bits (238), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GD+GGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI VHP + +    DR D+A+L+L +PV +  +I P+CLP+K         G      
Sbjct: 81  LEKIYVHPRYNWRENLDR-DIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                        + ++P  LQ V++PI++   C+         + I D M CAG++   
Sbjct: 140 GWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCK-----ASTRIRITDNMFCAGFKVND 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
               D+C+GDSGGP +M+     RW+ +GIVS G  C ++G+ G Y  V     WI  ++
Sbjct: 195 TKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKAWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 55/177 (31%), Positives = 90/177 (50%), Gaps = 18/177 (10%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++  +             
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDR--ETAASLLQAGYKGR 137
Query: 93  XXXXSRLR-----PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR---GGAK 144
                 L+     P  LQ V++PI++   C+     +   + I D M CAGY+   G   
Sbjct: 138 VTGWGNLKETWGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRG 192
Query: 145 DSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  +++
Sbjct: 193 DACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 249

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 82  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 140
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 141 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 195
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GD+GGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 196 GKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 255
Query: 199 N 199
           +
Sbjct: 256 D 256

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 112 LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 170
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 171 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 225
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GD+GGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 226 GKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 285
Query: 199 N 199
           +
Sbjct: 286 D 286

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 82/166 (49%), Gaps = 15/166 (9%)
Query: 36  INVHPYFKFTPQADRY--DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXX 93
           I + P+  +    + Y  D+A+L LD P+    ++ PIC+ +K                 
Sbjct: 71  IRIIPHHNYNAAINTYNHDIALLELDEPLVLNSYVTPICIADK---EYTNIFLKFGSGYV 127
Query: 94  XXXSRLRPK-----TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
               R+  K      LQ + VP++D   C R  K       I + M CAG+  G +DSCQ
Sbjct: 128 SGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTK-----FTITNNMFCAGFHEGGRDSCQ 182
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GDSGGP + E  G  FL GI+S G  CA +G+ GIY +V+  V+WI
Sbjct: 183 GDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWI 228

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR ++A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-NIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+ DSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEADSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 85/166 (51%), Gaps = 5/166 (3%)
Query: 31  FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXX 90
            G+ +   HP +    +   +D+A++RL+R V++  +I P+CLP+  E+           
Sbjct: 112 LGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVG 171
Query: 91  XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGD 150
                  +      Q + VP++   QC +   + G+ V      +CAG    AKDSC GD
Sbjct: 172 WGRTETGQYS-TIKQKLAVPVVHAEQCAKTFGAAGVRV--RSSQLCAGGEK-AKDSCGGD 227
Query: 151 SGGPLMMERTGR-WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWIS 195
           SGGPL+ ER  + +FL G+VS G +C  +G PGIY +V    DWI 
Sbjct: 228 SGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIE 273

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI VHP + +    DR D+A+L+L +PV +  +I P+CLP+K         G      
Sbjct: 81  LEKIYVHPRYNWRENLDR-DIALLKLKKPVPFSDYIHPVCLPDKQTVTSLLRAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                        + ++P  LQ V++PI++   C+         + I D M CAG++   
Sbjct: 140 GWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCK-----ASTRIRITDNMFCAGFKVND 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
               D+C+GD+GGP +M+     RW+ +GIVS G  C ++G+ G Y  V     WI  ++
Sbjct: 195 TKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKRWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 90/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAG++   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGFKVND 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
               D+C+GDSGGP +M+     RW+ +GIVS G  C ++G+ G Y  V     WI  ++
Sbjct: 195 TKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/164 (35%), Positives = 81/164 (49%), Gaps = 10/164 (6%)
Query: 33  VRKINVHPYFK-FTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXX 91
           +++I  HP+F  FT     YD+A+L L++P +Y   + PI LP+                
Sbjct: 80  LKRIISHPFFNDFTFD---YDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGW 136
Query: 92  XXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDS 151
                       LQ  ++ +I+   CE     N +   I   MMC G+  G  DSCQGDS
Sbjct: 137 GHTQYGGTGALILQKGEIRVINQTTCE-----NLLPQQITPRMMCVGFLSGGVDSCQGDS 191
Query: 152 GGPLM-MERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GGPL  +E  GR F  G+VS G  CAQ+ +PG+Y R+    DWI
Sbjct: 192 GGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWI 235

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+ DSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDACEPDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 85  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 143
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CA Y+   
Sbjct: 144 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAYYKPDE 198
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+C+GDSGGP +M+     RW+ +GIVS G  C + G+ G Y  V     WI  ++
Sbjct: 199 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVI 258
Query: 199 N 199
           +
Sbjct: 259 D 259

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/170 (36%), Positives = 85/170 (50%), Gaps = 10/170 (5%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
           V +I VHP F         D+A+L L+ PV     +  + LP   E              
Sbjct: 74  VSRIIVHPQFYIIQTGA--DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWG 131
Query: 93  XXXXSRLRPKT--LQAVDVPIIDNRQCE-RWHKS--NGINV-VIYDEMMCAGYRGGAKDS 146
                   P    L+ V VPI++N  C+ ++H     G +V +I D+M+CAG     +DS
Sbjct: 132 DVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDS 189
Query: 147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISY 196
           CQGDSGGPL+ +  G W   G+VS G  CAQ  +PGIY RV Y +DWI +
Sbjct: 190 CQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 11/170 (6%)
Query: 33  VRKINVHPYFK---FTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXX 89
           ++K+ +   FK   +       D+ +L+L     +   ++ +CLP   +D          
Sbjct: 65  IQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTT 124
Query: 90  XXXXXXXSRLR-PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
                  +    P  LQ   +P++ N  C+++  +      I D M+CAG  G    SC 
Sbjct: 125 GWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAGASG--VSSCM 177
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           GDSGGPL+ ++ G W L+GIVS G S      PG+Y RV   V+W+   +
Sbjct: 178 GDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 227

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 11/170 (6%)
Query: 33  VRKINVHPYFK---FTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXX 89
           ++K+ +   FK   +       D+ +L+L     +   ++ +CLP   +D          
Sbjct: 80  IQKLKIAKVFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTT 139
Query: 90  XXXXXXXSRLR-PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
                  +    P  LQ   +P++ N  C+++  +      I D M+CAG  G    SC 
Sbjct: 140 GWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAGASG--VSSCM 192
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           GDSGGPL+ ++ G W L+GIVS G S      PG+Y RV   V+W+   +
Sbjct: 193 GDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 242

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/170 (35%), Positives = 85/170 (50%), Gaps = 10/170 (5%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
           V +I VHP F         D+A+L L+ PV     +  + LP   E              
Sbjct: 74  VSRIIVHPQFYIIQTGA--DIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWG 131
Query: 93  XXXXSRLRPKT--LQAVDVPIIDNRQCE-RWHKS--NGINV-VIYDEMMCAGYRGGAKDS 146
                   P    L+ V VPI++N  C+ ++H     G +V +I D+M+CAG     +DS
Sbjct: 132 DVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDS 189
Query: 147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISY 196
           C+GDSGGPL+ +  G W   G+VS G  CAQ  +PGIY RV Y +DWI +
Sbjct: 190 CKGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 18/198 (9%)
Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
            ++++ V LG+Y +    +        ++++ VHP   ++      D+A+L L +P    
Sbjct: 46  ESKKLLVRLGEYDLRRWEKW--ELDLDIKEVFVHP--NYSKSTTDNDIALLHLAQPATLS 101
Query: 66  PHIAPICLPEKGEDXXXXXXXXXXXXXX---------XXXSRLRPKTLQAVDVPIIDNRQ 116
             I PICLP+ G                             R R   L  + +P++ + +
Sbjct: 102 QTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNE 161
Query: 117 CERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA 176
           C     S  ++ ++ + M+CAG  G  +D+C+GDSGGP++    G WFL+G+VS G  C 
Sbjct: 162 C-----SEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCG 216
Query: 177 QQGQPGIYHRVAYTVDWI 194
                G+Y +V+  +DWI
Sbjct: 217 LLHNYGVYTKVSRYLDWI 234

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 18/198 (9%)
Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
            ++++ V LG+Y +    +        ++++ VHP   ++      D+A+L L +P    
Sbjct: 46  ESKKLLVRLGEYDLRRWEKW--ELDLDIKEVFVHP--NYSKSTTDNDIALLHLAQPATLS 101
Query: 66  PHIAPICLPEKGEDXXXXXXXXXX---------XXXXXXXSRLRPKTLQAVDVPIIDNRQ 116
             I PICLP+ G                             R R   L  + +P++ + +
Sbjct: 102 QTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNE 161
Query: 117 CERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA 176
           C     S  ++ ++ + M+CAG  G  +D+C+GDSGGP++    G WFL+G+VS G  C 
Sbjct: 162 C-----SEVMSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCG 216
Query: 177 QQGQPGIYHRVAYTVDWI 194
                G+Y +V+  +DWI
Sbjct: 217 LLHNYGVYTKVSRYLDWI 234

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 31  FGVRKINVH----PYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXX 86
            GV+ +  H    P+     + +  D+A++ L  P+    +I P+CLP  G+        
Sbjct: 70  LGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKIC 129
Query: 87  XXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV---IYDEMMCAGYRGGA 143
                        +   LQ   VPII N  C      NG +     I  +M CAGY  G 
Sbjct: 130 TVTGWGNTQYYGQQAGVLQEARVPIISNDVC------NGADFYGNQIKPKMFCAGYPEGG 183
Query: 144 KDSCQGDSGGPLMME----RTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
            D+CQGDSGGP + E    RT RW L GIVS G  CA   +PG+Y +V+   +WI   + 
Sbjct: 184 IDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIK 243
Query: 200 T 200
           T
Sbjct: 244 T 244

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/181 (33%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 31  FGVRKINVH----PYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXX 86
            GV+ +  H    P+     + +  D+A++ L  P+    +I P+CLP  G+        
Sbjct: 187 LGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKIC 246
Query: 87  XXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV---IYDEMMCAGYRGGA 143
                        +   LQ   VPII N  C      NG +     I  +M CAGY  G 
Sbjct: 247 TVTGWGNTQYYGQQAGVLQEARVPIISNDVC------NGADFYGNQIKPKMFCAGYPEGG 300
Query: 144 KDSCQGDSGGPLMME----RTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
            D+CQGDSGGP + E    RT RW L GIVS G  CA   +PG+Y +V+   +WI   + 
Sbjct: 301 IDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIK 360
Query: 200 T 200
           T
Sbjct: 361 T 361

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 84/184 (45%), Gaps = 17/184 (9%)
Query: 31  FGVRKINVH----PYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXX 86
            GV+ +  H    P+     + +  D+A++ L  P+    +I P+CLP  G+        
Sbjct: 187 LGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKIC 246
Query: 87  XXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV---IYDEMMCAGYRGGA 143
                        +   LQ   VPII N  C      NG +     I  +M CAGY  G 
Sbjct: 247 TVTGWGNTQYYGQQAGVLQEARVPIISNDVC------NGADFYGNQIKPKMFCAGYPEGG 300
Query: 144 KDSCQGDSGGPLMME----RTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
            D+CQGDSGGP + E    RT RW L GIVS G  CA   +PG+Y +V+   +WI   + 
Sbjct: 301 IDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIK 360
Query: 200 TATN 203
           T + 
Sbjct: 361 THSE 364

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 14/192 (7%)
Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHI 68
           ++QV LG++  N AV           K+ +HP   +  +    D+ +++L +P     ++
Sbjct: 45  RIQVRLGEH--NIAVNEGTEQFIDSVKVIMHP--SYNSRNLDNDIMLIKLSKPASLNSYV 100
Query: 69  APICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
           + + LP                      S   P TL+ +D+PI+ +  C   +       
Sbjct: 101 STVALPSSCASSGTRCLVSGWGNLSGSSSNY-PDTLRCLDLPILSSSSCNSAYPGQ---- 155
Query: 129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA 188
            I   M CAG+  G KDSCQGDSGGP++        L G+VS GY CAQ+ +PG+Y +V 
Sbjct: 156 -ITSNMFCAGFMEGGKDSCQGDSGGPVVCNGQ----LQGVVSWGYGCAQRNKPGVYTKVC 210
Query: 189 YTVDWISYIMNT 200
               WIS  M++
Sbjct: 211 NYRSWISSTMSS 222

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 20/181 (11%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK---------GEDXXXX 83
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++         G      
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVT 139
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR--- 140
                         + +P  LQ V++PI++   C+     +   + I D M CAGY+   
Sbjct: 140 GWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDE 194
Query: 141 GGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G   D+ +GDSGGP +M+     RW+ +GIVS G    + G+ G Y  V     WI  ++
Sbjct: 195 GKRGDAAEGDSGGPFVMKSPFNNRWYQMGIVSWGEGADRDGKYGFYTHVFRLKKWIQKVI 254
Query: 199 N 199
           +
Sbjct: 255 D 255

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/165 (33%), Positives = 79/165 (47%), Gaps = 6/165 (3%)
Query: 32  GVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXX 91
           G+R+I VH  +K  P  D YD+++  L  PV Y   +  +CLP+   +            
Sbjct: 68  GLRRIIVHEKYKH-PSHD-YDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGF 125
Query: 92  XXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDS 151
                       L+   V +ID   C   ++    N  I   M+CAG   G  D+CQGDS
Sbjct: 126 GALKNDGYSQNHLRQAQVTLIDATTC---NEPQAYNDAITPRMLCAGSLEGKTDACQGDS 182
Query: 152 GGPLMM-ERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWIS 195
           GGPL+  +    W+L GIVS G  CA+  +PG+Y RV    DWI+
Sbjct: 183 GGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWIT 227

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 9/169 (5%)
Query: 31  FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXX 90
            GV+   +HP  ++ P     DVA++ L         + PICLPE  +            
Sbjct: 240 LGVKHTTLHP--QYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWG 297
Query: 91  XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGD 150
                  +  P+TL  +++PI+D+  C++ +    +   +  +M+CAG + G KD+C GD
Sbjct: 298 KQFL---QRFPETLMEIEIPIVDHSTCQKAYAP--LKKKVTRDMICAGEKEGGKDACAGD 352
Query: 151 SGGPL--MMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYI 197
           SGGP+  +    G+W+L+G VS G  C ++ + G+Y  + +  DWI  +
Sbjct: 353 SGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRV 401

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 9/169 (5%)
Query: 31  FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXX 90
            GV+   +HP  ++ P     DVA++ L         + PICLPE  +            
Sbjct: 85  LGVKHTTLHP--QYDPNTFENDVALVELLESPVLNAFVMPICLPEGPQQEGAMVIVSGWG 142
Query: 91  XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGD 150
                  +  P+TL  +++PI+D+  C++ +    +   +  +M+CAG + G KD+C GD
Sbjct: 143 KQFL---QRFPETLMEIEIPIVDHSTCQKAYAP--LKKKVTRDMICAGEKEGGKDACAGD 197
Query: 151 SGGPL--MMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYI 197
           SGGP+  +    G+W+L+G VS G  C ++ + G+Y  + +  DWI  +
Sbjct: 198 SGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRV 246

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score = 90.1 bits (222), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+   H
Sbjct: 66  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAH 121
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 122 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 177
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 178 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 231
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 232 CNYVDWI 238

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/170 (35%), Positives = 84/170 (49%), Gaps = 10/170 (5%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
           V +I VHP F         D+A+L L+ PV     +  + LP   E              
Sbjct: 74  VSRIIVHPQFYIIQTG--ADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWG 131
Query: 93  XXXXSRLRPKT--LQAVDVPIIDNRQCE-RWHKS--NGINV-VIYDEMMCAGYRGGAKDS 146
                   P    L+ V VPI++N  C+ ++H     G +V +I D+M+CAG     +DS
Sbjct: 132 DVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--NSQRDS 189
Query: 147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISY 196
           C+GDSGGPL+ +  G W   G+VS    CAQ  +PGIY RV Y +DWI +
Sbjct: 190 CKGDSGGPLVCKVNGTWLQAGVVSWDEGCAQPNRPGIYTRVTYYLDWIHH 239

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVP 110
           D+A+++L+  V    +I PICLP K  +                  R    + L  VD+P
Sbjct: 88  DIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIP 147
Query: 111 IIDNRQC-ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM--ERTGRWFLIG 167
           I+D+++C   + K       +   M+CAG   G KDSC+GDSGG L+     T RWF+ G
Sbjct: 148 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGG 207
Query: 168 IVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMN 199
           IVS G  +C + GQ G+Y +V   + WI  I++
Sbjct: 208 IVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVP 110
           D+A+++L+  V    +I PICLP K  +                  R    + L  VD+P
Sbjct: 174 DIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIP 233
Query: 111 IIDNRQC-ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM--ERTGRWFLIG 167
           I+D+++C   + K       +   M+CAG   G KDSC+GDSGG L+     T RWF+ G
Sbjct: 234 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGG 293
Query: 168 IVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMN 199
           IVS G  +C + GQ G+Y +V   + WI  I++
Sbjct: 294 IVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 326

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVP 110
           D+A+++L+  V    +I PICLP K  +                  R    + L  VD+P
Sbjct: 249 DIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIP 308
Query: 111 IIDNRQC-ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM--ERTGRWFLIG 167
           I+D+++C   + K       +   M+CAG   G KDSC+GDSGG L+     T RWF+ G
Sbjct: 309 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGG 368
Query: 168 IVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMN 199
           IVS G  +C + GQ G+Y +V   + WI  I++
Sbjct: 369 IVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 401

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score = 88.6 bits (218), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 73/152 (48%), Gaps = 10/152 (6%)
Query: 43  KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPK 102
           +FT +   +D+AVLRL  P+ +  ++AP  LP                      +   P 
Sbjct: 79  RFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPATGTKCLISGWGNTASSGADY-PD 137
Query: 103 TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGR 162
            LQ +D P++   +CE  +        I   M C G+  G KDSCQGDSGGP++      
Sbjct: 138 ELQCLDAPVLSQAKCEASYPGK-----ITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQ-- 190
Query: 163 WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
             L G+VS G  CAQ+ +PG+Y +V   V WI
Sbjct: 191 --LQGVVSWGDGCAQKNKPGVYTKVYNYVKWI 220

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 34  RKINVHPYF------KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG---EDXXXXX 84
           +++N+ P+       +   +  R D+A+L+L  P      + P CLP       D     
Sbjct: 81  QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECF 140
Query: 85  XXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAK 144
                       + L    L+   +P+I+N+ C R+   NG    +    +CAG+  G  
Sbjct: 141 ITGWGETQGTFGAGL----LKEAQLPVIENKVCNRYEFLNG---RVQSTELCAGHLAGGT 193
Query: 145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           DSCQGDSGGPL+     ++ L G+ S G  CA+  +PG+Y RV+  V WI  +M
Sbjct: 194 DSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 247

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 34  RKINVHPYF------KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG---EDXXXXX 84
           +++N+ P+       +   +  R D+A+L+L  P      + P CLP       D     
Sbjct: 78  QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECF 137
Query: 85  XXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAK 144
                       + L    L+   +P+I+N+ C R+   NG    +    +CAG+  G  
Sbjct: 138 ITGWGETQGTFGAGL----LKEAQLPVIENKVCNRYEFLNG---RVQSTELCAGHLAGGT 190
Query: 145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           DSCQGDSGGPL+     ++ L G+ S G  CA+  +PG+Y RV+  V WI  +M
Sbjct: 191 DSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/153 (33%), Positives = 79/153 (51%), Gaps = 5/153 (3%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVP 110
           D+A+++L+  V    +I PICLP K  +                  R    + L  VD+P
Sbjct: 88  DIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFLARNLMYVDIP 147
Query: 111 IIDNRQC-ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM--ERTGRWFLIG 167
           I+D+++C   + K       +   M+CAG   G KDSC+GD+GG L+     T RWF+ G
Sbjct: 148 IVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDAGGALVFLDSETERWFVGG 207
Query: 168 IVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMN 199
           IVS G  +C + GQ G+Y +V   + WI  I++
Sbjct: 208 IVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ I+  +E    +     KI  HP F      +  D+ +++L  P      
Sbjct: 44  SRIQVRLGEHNID-VLEGNEQF-INAAKIITHPNFNGNTLDN--DIMLIKLSSPATLNSR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                      S   P  LQ +  P++ N  C+  +      
Sbjct: 100 VATVSLPRSCAAAGTECLISGWGNTKSSGSSY-PSLLQCLKAPVLSNSSCKSSYPGQ--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I   M+C G+  G KDSCQGDSGGP++        L GIVS GY CAQ+ +PG+Y +V
Sbjct: 156 --ITGNMICVGFLQGGKDSCQGDSGGPVVCNGQ----LQGIVSWGYGCAQKNKPGVYTKV 209
Query: 188 AYTVDWI 194
              V+WI
Sbjct: 210 CNYVNWI 216

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score = 87.4 bits (215), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 78/171 (45%), Gaps = 10/171 (5%)
Query: 34  RKINVHPYF------KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXX 87
           +++N+ P+       +   +  R D+A+L+L  P      + P CLP             
Sbjct: 78  QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSP-NYVVADRTEC 136
Query: 88  XXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSC 147
                           L    +P+I+N+ C R+   NG    +    +CAG+  G  DSC
Sbjct: 137 FITGWGETQGTFGAGLLMEAQLPVIENKVCNRYEFLNG---RVQSTELCAGHLAGGTDSC 193
Query: 148 QGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           QGDSGGPL+     ++ L G+ S G  CA+  +PG+Y RV+  V WI  +M
Sbjct: 194 QGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +    + I  HP F    +    D+ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFVNAAKIIK-HPNFDH--KTLNNDIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRETYNNDIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE        +
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEA-----SSS 153
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
            +I D M+C G+  G KD+CQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 154 FIITDNMVCVGFLEGGKDACQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 34  RKINVHPYF------KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG---EDXXXXX 84
           +++N+ P+       +   +  R D+A+L+L  P      + P CLP       D     
Sbjct: 81  QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECF 140
Query: 85  XXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAK 144
                       + L    L+   +P+I+N+ C R+   NG    +    +CAG+  G  
Sbjct: 141 ITGWGETQGTFGAGL----LKEAQLPVIENKVCNRYEFLNG---RVQSTELCAGHLAGGT 193
Query: 145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           DSCQGD+GGPL+     ++ L G+ S G  CA+  +PG+Y RV+  V WI  +M
Sbjct: 194 DSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 247

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 34  RKINVHPYF------KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG---EDXXXXX 84
           +++N+ P+       +   +  R D+A+L+L  P      + P CLP       D     
Sbjct: 80  QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECF 139
Query: 85  XXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAK 144
                       + L    L+   +P+I+N+ C R+   NG    +    +CAG+  G  
Sbjct: 140 ITGWGETQGTFGAGL----LKEAQLPVIENKVCNRYEFLNG---RVQSTELCAGHLAGGT 192
Query: 145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           DSCQGD+GGPL+     ++ L G+ S G  CA+  +PG+Y RV+  V WI  +M
Sbjct: 193 DSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 246

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRK-INVHPYFKFTPQADRYDVAVLRL----DRPVQ 63
            V V LG +  N   +     TFG+ K I    Y  F P    +D+ ++RL    DR   
Sbjct: 50  SVSVVLGQHFFNRTTDV--TQTFGIEKYIPYTLYSVFNPS--DHDLVLIRLKKKGDRCAT 105
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXS-RLRPKTLQAVDVPIIDNRQCERWHK 122
               + PICLPE G                   +      +L+   VP++ + +C     
Sbjct: 106 RSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCS---S 162
Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPG 182
                  I   M+CAGY     D+CQGDSGGPL  E+ G  +L GI+S G  C +  +PG
Sbjct: 163 PEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPG 222
Query: 183 IYHRVAYTVDWIS 195
           +Y RVA  VDWI+
Sbjct: 223 VYTRVANYVDWIN 235

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRK-INVHPYFKFTPQADRYDVAVLRL----DRPVQ 63
            V V LG +  N   +     TFG+ K I    Y  F P    +D+ ++RL    DR   
Sbjct: 50  SVSVVLGQHFFNRTTDV--TQTFGIEKYIPYTLYSVFNPS--DHDLVLIRLKKKGDRCAT 105
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXS-RLRPKTLQAVDVPIIDNRQCERWHK 122
               + PICLPE G                   +      +L+   VP++ + +C     
Sbjct: 106 RSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCS---S 162
Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPG 182
                  I   M+CAGY     D+CQGDSGGPL  E+ G  +L GI+S G  C +  +PG
Sbjct: 163 PEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPG 222
Query: 183 IYHRVAYTVDWIS 195
           +Y RVA  VDWI+
Sbjct: 223 VYTRVANYVDWIN 235

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A I LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATIALPSSCAPAGTQCLISGWGHTLSSGVN-HPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 34  RKINVHPYF------KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG---EDXXXXX 84
           +++N+ P+       +   +  R D+A+L+L  P      + P CLP       D     
Sbjct: 78  QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECF 137
Query: 85  XXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAK 144
                       + L    L+   +P+I+N+ C R+   NG    +    +CAG+  G  
Sbjct: 138 ITGWGETQGTFGAGL----LKEAQLPVIENKVCNRYEFLNG---RVQSTELCAGHLAGGT 190
Query: 145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           DSCQGD+GGPL+     ++ L G+ S G  CA+  +PG+Y RV+  V WI  +M
Sbjct: 191 DSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 244

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 34  RKINVHPYF------KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG---EDXXXXX 84
           +++N+ P+       +   +  R D+A+L+L  P      + P CLP       D     
Sbjct: 79  QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECF 138
Query: 85  XXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAK 144
                       + L    L+   +P+I+N+ C R+   NG    +    +CAG+  G  
Sbjct: 139 ITGWGETQGTFGAGL----LKEAQLPVIENKVCNRYEFLNG---RVQSTELCAGHLAGGT 191
Query: 145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           DSCQGD+GGPL+     ++ L G+ S G  CA+  +PG+Y RV+  V WI  +M
Sbjct: 192 DSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 245

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score = 87.0 bits (214), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 34  RKINVHPYF------KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG---EDXXXXX 84
           +++N+ P+       +   +  R D+A+L+L  P      + P CLP       D     
Sbjct: 77  QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYMVADRTECF 136
Query: 85  XXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAK 144
                       + L    L+   +P+I+N+ C R+   NG    +    +CAG+  G  
Sbjct: 137 ITGWGETQGTFGAGL----LKEAQLPVIENKVCNRYEFLNG---RVQSTELCAGHLAGGT 189
Query: 145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           DSCQGDSGGPL+     ++ L G+ S G  CA+  +PG+Y RV+  V WI  ++
Sbjct: 190 DSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVL 243

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 63/193 (32%), Positives = 87/193 (45%), Gaps = 13/193 (6%)
Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRK-INVHPYFKFTPQADRYDVAVLRL----DRPVQ 63
            V V LG +  N   +     TFG+ K I    Y  F P    +D+ ++RL    DR   
Sbjct: 85  SVSVVLGQHFFNRTTDV--TQTFGIEKYIPYTLYSVFNPS--DHDLVLIRLKKKGDRCAT 140
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXS-RLRPKTLQAVDVPIIDNRQCERWHK 122
               + PICLPE G                   +      +L+   VP++ + +C     
Sbjct: 141 RSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCS---S 197
Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPG 182
                  I   M+CAGY     D+CQGDSGGPL  E+ G  +L GI+S G  C +  +PG
Sbjct: 198 PEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPG 257
Query: 183 IYHRVAYTVDWIS 195
           +Y RVA  VDWI+
Sbjct: 258 VYTRVANYVDWIN 270

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRETYNNDIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 54  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 109
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 110 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 165
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 166 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 219
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 220 CNYVDWI 226

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 52  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 107
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 108 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 163
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 164 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 217
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 218 CNYVDWI 224

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 52/174 (29%), Positives = 82/174 (47%), Gaps = 16/174 (9%)
Query: 34  RKINVHPYF------KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG---EDXXXXX 84
           +++N+ P+       +   +  R D+A+L+L  P      + P CLP       D     
Sbjct: 622 QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECF 681
Query: 85  XXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAK 144
                       + L    L+   +P+I+N+ C R+   NG    +    +CAG+  G  
Sbjct: 682 ITGWGETQGTFGAGL----LKEAQLPVIENKVCNRYEFLNG---RVQSTELCAGHLAGGT 734
Query: 145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           DSCQGDSGGPL+     ++ L G+ S G  CA+  +PG+Y RV+  V WI  +M
Sbjct: 735 DSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVM 788

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGHTLSSGVN-HPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii From The Beetle Holotrichia Diomphalia Length = 394

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 92/195 (47%), Gaps = 9/195 (4%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +++  G++   +  E LP     +R++ +H    F P+    DVA+L LDRP+    +I 
Sbjct: 191 IKIRAGEWDTLTEKERLPYQERKIRQVIIHS--NFNPKTVVNDVALLLLDRPLVQADNIG 248
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLR-PKTLQAVDVPIIDNRQCERWHKSN--GI 126
            ICLP++ +                  SR R    L+ + +P +D  +C+   ++   G+
Sbjct: 249 TICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGL 308
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM---ERTGRWFLIGIVSAGYSCAQQGQPGI 183
             V+    +CAG   G KD+C GD G PL         R+  +GIV+ G  C  +  PG+
Sbjct: 309 KFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGV 367
Query: 184 YHRVAYTVDWISYIM 198
           Y  VA+  +WI   M
Sbjct: 368 YANVAHFRNWIDQEM 382

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ I+  +E    +     KI  HP F      +  D+ +++L  P      
Sbjct: 44  SRIQVRLGEHNID-VLEGNEQF-INAAKIITHPNFNGNTLDN--DIMLIKLSSPATLXSR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                      S   P  LQ +  P++ +  C+  +      
Sbjct: 100 VATVSLPRSCAAAGTECLISGWGNTKSSGSSY-PSLLQCLKAPVLSDSSCKSSYPGQ--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I   M+C G+  G KDSCQGDSGGP++        L GIVS GY CAQ+ +PG+Y +V
Sbjct: 156 --ITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ----LQGIVSWGYGCAQKNKPGVYTKV 209
Query: 188 AYTVDWI 194
              V+WI
Sbjct: 210 CNYVNWI 216

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGD+GGP++        L GIVS GY CA    PG+Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKDSCQGDAGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ I+  +E    +     KI  HP F      +  D+ +++L  P      
Sbjct: 44  SRIQVRLGEHNID-VLEGNEQF-INAAKIITHPNFNGNTLDN--DIMLIKLSSPATLNSR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                      S   P  LQ +  P++ +  C+  +      
Sbjct: 100 VATVSLPRSCAAAGTECLISGWGNTKSSGSSY-PSLLQCLKAPVLSDSSCKSSYPGQ--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I   M+C G+  G KDSCQGDSGGP++        L GIVS GY CAQ+ +PG+Y +V
Sbjct: 156 --ITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ----LQGIVSWGYGCAQKNKPGVYTKV 209
Query: 188 AYTVDWI 194
              V+WI
Sbjct: 210 CNYVNWI 216

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ I+  +E    +     KI  HP F      +  D+ +++L  P      
Sbjct: 44  SRIQVRLGEHNID-VLEGNEQF-INAAKIITHPNFNGNTLDN--DIMLIKLSSPATLNSR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                      S   P  LQ +  P++ +  C+  +      
Sbjct: 100 VATVSLPRSCAAAGTECLISGWGNTKSSGSSY-PSLLQCLKAPVLSDSSCKSSYPGQ--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I   M+C G+  G KDSCQGDSGGP++        L GIVS GY CAQ+ +PG+Y +V
Sbjct: 156 --ITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ----LQGIVSWGYGCAQKNKPGVYTKV 209
Query: 188 AYTVDWI 194
              V+WI
Sbjct: 210 CNYVNWI 216

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ I+  +E    +     KI  HP F      +  D+ +++L  P      
Sbjct: 44  SRIQVRLGEHNID-VLEGNEQF-INAAKIITHPNFNGNTLDN--DIMLIKLSSPATLNSR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                      S   P  LQ +  P++ +  C+  +      
Sbjct: 100 VATVSLPRSCAAAGTECLISGWGNTKSSGSSY-PSLLQCLKAPVLSDSSCKSAYPGQ--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I   M+C G+  G KDSCQGDSGGP++        L GIVS GY CAQ+ +PG+Y +V
Sbjct: 156 --ITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ----LQGIVSWGYGCAQKNKPGVYTKV 209
Query: 188 AYTVDWI 194
              V+WI
Sbjct: 210 CNYVNWI 216

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 54  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 109
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 110 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 165
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGD+GGP++        L GIVS GY CA    PG+Y +V
Sbjct: 166 --ITDNMVCVGFLEGGKDSCQGDAGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 219
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 220 CNYVDWI 226

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 83/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIV  GY CA    PG+Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVEWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    ++ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNNIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 88/193 (45%), Gaps = 15/193 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            +V+V LG++ I    E    +    R I  HP   ++      D+ +++L +P     +
Sbjct: 44  SRVEVRLGEHNI-KVTEGSEQFISSSRVIR-HP--NYSSYNIDNDIMLIKLSKPATLNTY 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           + P+ LP                      S      LQ +++PI+    C     +N   
Sbjct: 100 VQPVALPSSCAPAGTMCTVSGWGNTMS--STADKNKLQCLNIPILSYSDC-----NNSYP 152
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
            +I + M CAGY  G KDSCQGDSGGP++        L G+VS GY CA+ G PG+Y +V
Sbjct: 153 GMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKV 208
Query: 188 AYTVDWISYIMNT 200
               DW++  M T
Sbjct: 209 CIFNDWLTSTMAT 221

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 83/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGD GGP++        L GIVS GY CA    PG+Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKDSCQGDCGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 83/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIV  GY CA    PG+Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVKWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ I+  +E    +     KI  HP F      +  D+ +++L  P      
Sbjct: 52  SRIQVRLGEHNID-VLEGNEQF-INAAKIITHPNFNGNTLDN--DIMLIKLSSPATLNSR 107
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                      S   P  LQ +  P++ +  C+  +      
Sbjct: 108 VATVSLPRSCAAAGTECLISGWGNTKSSGSSY-PSLLQCLKAPVLSDSSCKSSYPGQ--- 163
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I   M+C G+  G KDSCQGDSGGP++        L GIVS GY CAQ+ +PG+Y +V
Sbjct: 164 --ITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ----LQGIVSWGYGCAQKNKPGVYTKV 217
Query: 188 AYTVDWI 194
              V+WI
Sbjct: 218 CNYVNWI 224

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 82/187 (43%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  V           KI  HP   F  +    ++ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN--VLEGDEQFVNAAKIIKHP--NFDRKTLNNNIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score = 85.1 bits (209), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 52  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 107
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  L+ +D P++    CE  +      
Sbjct: 108 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLKCLDAPLLPQADCEASYPGK--- 163
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 164 --ITDNMVCVGFLEGGKDSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 217
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 218 CNYVDWI 224

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 84/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 52  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 107
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 108 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 163
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G KDSCQG+SGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 164 --ITDNMVCVGFLEGGKDSCQGNSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 217
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 218 CNYVDWI 224

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 83/187 (44%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G K SCQGDSGGP++        L GIVS GY CA    PG+Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKSSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 15/191 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            +V+V LG++ I    E    +    R I  HP   ++      D+ +++L +P     +
Sbjct: 59  SRVEVRLGEHNIK-VTEGSEQFISSSRVIR-HP--NYSSYNIDNDIMLIKLSKPATLNTY 114
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           + P+ LP                      S      LQ +++PI+    C     +N   
Sbjct: 115 VQPVALPTSCAPAGTMCTVSGWGNTMS--STADSNKLQCLNIPILSYSDC-----NNSYP 167
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
            +I + M CAGY  G KDSCQGDSGGP++        L G+VS GY CA+ G PG+Y +V
Sbjct: 168 GMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKV 223
Query: 188 AYTVDWISYIM 198
               DW++  M
Sbjct: 224 CIFNDWLTSTM 234

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 15/191 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            +V+V LG++ I    E    +    R I  HP   ++      D+ +++L +P     +
Sbjct: 44  SRVEVRLGEHNIK-VTEGSEQFISSSRVIR-HP--NYSSYNIDNDIMLIKLSKPATLNTY 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           + P+ LP                      S      LQ +++PI+    C     +N   
Sbjct: 100 VQPVALPTSCAPAGTMCTVSGWGNTMS--STADSNKLQCLNIPILSYSDC-----NNSYP 152
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
            +I + M CAGY  G KDSCQGDSGGP++        L G+VS GY CA+ G PG+Y +V
Sbjct: 153 GMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKV 208
Query: 188 AYTVDWISYIM 198
               DW++  M
Sbjct: 209 CIFNDWLTSTM 219

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 15/191 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            +V+V LG++ I    E    +    R I  HP   ++      D+ +++L +P     +
Sbjct: 44  SRVEVRLGEHNIK-VTEGSEQFISSSRVIR-HP--NYSSYNIDNDIMLIKLSKPATLNTY 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           + P+ LP                      S      LQ +++PI+    C     +N   
Sbjct: 100 VQPVALPTSCAPAGTMCTVSGWGNTMS--STADSNKLQCLNIPILSYSDC-----NNSYP 152
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
            +I + M CAGY  G KDSCQGDSGGP++        L G+VS GY CA+ G PG+Y +V
Sbjct: 153 GMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKV 208
Query: 188 AYTVDWISYIM 198
               DW++  M
Sbjct: 209 CIFNDWLTSTM 219

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 15/191 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            +V+V LG++ I    E    +    R I  HP   ++      D+ +++L +P     +
Sbjct: 64  SRVEVRLGEHNIK-VTEGSEQFISSSRVIR-HP--NYSSYNIDNDIMLIKLSKPATLNTY 119
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           + P+ LP                      S      LQ +++PI+    C   +      
Sbjct: 120 VQPVALPTSCAPAGTMCTVSGWGNTMS--STADSNKLQCLNIPILSYSDCNNSYPG---- 173
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
            +I + M CAGY  G KDSCQGDSGGP++        L G+VS GY CA+ G PG+Y +V
Sbjct: 174 -MITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKV 228
Query: 188 AYTVDWISYIM 198
               DW++  M
Sbjct: 229 CIFNDWLTSTM 239

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score = 83.6 bits (205), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPI 111
           D+ +++L +P     ++ P+ LP                      S      LQ +++PI
Sbjct: 84  DIMLIKLSKPATLNTYVQPVALPSSCAPAGTMCTVSGWGNTMS--STADGDKLQCLNIPI 141
Query: 112 IDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSA 171
           +    C     +N    +I + M CAGY  G KDSCQGDSGGP++        L G+VS 
Sbjct: 142 LSYSDC-----NNSYPGMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE----LQGVVSW 192
Query: 172 GYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
           GY CA+ G PG+Y +V    DW++  M T
Sbjct: 193 GYGCAEPGNPGVYAKVCIFNDWLTSTMAT 221

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 88/192 (45%), Gaps = 15/192 (7%)
Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHI 68
           +V+V LG++ I    E    +    R I  HP   ++      D+ +++L +P     ++
Sbjct: 45  RVEVRLGEHNI-KVTEGSEQFISSSRVIR-HP--NYSSYNIDNDIMLIKLSKPATLNTYV 100
Query: 69  APICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
            P+ LP                      S      LQ +++PI+    C     +N    
Sbjct: 101 QPVALPSSCAPAGTMCTVSGWGNTMS--STADKNKLQCLNIPILSYSDC-----NNSYPG 153
Query: 129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA 188
           +I + M CAGY  G KDSCQGDSGGP++        L G+VS GY CA+ G PG+Y +V 
Sbjct: 154 MITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKVC 209
Query: 189 YTVDWISYIMNT 200
              +W++  M T
Sbjct: 210 IFNNWLTSTMAT 221

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLXSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 15/191 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            +V+V LG++ I    E    +    R I  HP   ++      D+ +++L +P     +
Sbjct: 44  SRVEVRLGEHNIK-VTEGSEQFISSSRVIR-HP--NYSSYNIDNDIMLIKLSKPATLNTY 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           + P+ LP                      S      LQ +++PI+    C   +      
Sbjct: 100 VQPVALPTSCAPAGTMCTVSGWGNTMS--STADSDKLQCLNIPILSYSDCNDSYPG---- 153
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
            +I + M CAGY  G KDSCQGDSGGP++        L G+VS GY CA+ G PG+Y +V
Sbjct: 154 -MITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKV 208
Query: 188 AYTVDWISYIM 198
               DW++  M
Sbjct: 209 CIFSDWLTSTM 219

>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant Length = 229

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNKRRKNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score = 83.2 bits (204), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r Reveals Enzyme-product Like Contacts Length = 242

Iteration: 1
 Score = 83.2 bits (204), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 90/197 (45%), Gaps = 14/197 (7%)
Query: 9   QVQVTLGDYVINSAVEPLPAY-TFGVRKINVHPYFKFTPQADRY----DVAVLRLDRPVQ 63
           Q   +L  ++ ++ VE L       +R+++VHP ++   Q + Y    D+A+L L+  V 
Sbjct: 49  QSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYR---QDESYNFEGDIALLELENSVT 105
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKS 123
             P++ PICLP+   D                        L+ V +P+ + + CE W + 
Sbjct: 106 LGPNLLPICLPDN--DTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRG 163
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME--RTGRWFLIGIVSAGYSCAQQGQP 181
                V    M CAG+    +D+CQGDSGG   +    T RW   GIVS G  C++    
Sbjct: 164 KNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GY 221
Query: 182 GIYHRVAYTVDWISYIM 198
           G Y +V   VDWI   M
Sbjct: 222 GFYTKVLNYVDWIKKEM 238

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base Magnesium(Ii) Chelate Length = 228

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 51  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 106
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 107 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 160
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 161 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 216
Query: 190 TVDWI 194
            V WI
Sbjct: 217 YVSWI 221

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 82/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+    C+  +        
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSTSSCKSAYPGQ----- 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 66  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 121
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 122 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 175
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 176 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 231
Query: 190 TVDWI 194
            V WI
Sbjct: 232 YVSWI 236

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 60  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 115
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 116 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 169
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 170 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 225
Query: 190 TVDWI 194
            V WI
Sbjct: 226 YVSWI 230

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 80/164 (48%), Gaps = 11/164 (6%)
Query: 43  KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPK 102
            + P     DV+V++    + +  ++ PIC P+   D                     P 
Sbjct: 82  NYDPATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPA 141
Query: 103 TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGA--KDSCQGDSGGPL-MMER 159
            L+ V + I  N  C+  + S+     IYD+M+CA    G   +DSCQGDSGGPL + + 
Sbjct: 142 VLRYVTLNITTNAFCDAVYTSD----TIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDG 197
Query: 160 TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTATN 203
           +G + L+GIVS G  CA  G PG+Y RV +   WI+   +T TN
Sbjct: 198 SGIFSLVGIVSWGIGCA-SGYPGVYSRVGFHAGWIT---DTITN 237

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 90/197 (45%), Gaps = 14/197 (7%)
Query: 9   QVQVTLGDYVINSAVEPLPAY-TFGVRKINVHPYFKFTPQADRY----DVAVLRLDRPVQ 63
           Q   +L  ++ ++ VE L       +R+++VHP ++   Q + Y    D+A+L L+  V 
Sbjct: 138 QSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYR---QDESYNFEGDIALLELENSVT 194
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKS 123
             P++ PICLP+   D                        L+ V +P+ + + CE W + 
Sbjct: 195 LGPNLLPICLPDN--DTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRG 252
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME--RTGRWFLIGIVSAGYSCAQQGQP 181
                V    M CAG+    +D+CQGDSGG   +    T RW   GIVS G  C++    
Sbjct: 253 KNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GY 310
Query: 182 GIYHRVAYTVDWISYIM 198
           G Y +V   VDWI   M
Sbjct: 311 GFYTKVLNYVDWIKKEM 327

>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between Pancreatic Secretory Inhibitor (Kazal Type) And Trypsinogen At 1.8 Angstroms Resolution. Structure Solution, Crystallographic Refinement And Preliminary Structural Interpretation Length = 229

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 52  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 107
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 108 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 161
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 162 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 217
Query: 190 TVDWI 194
            V WI
Sbjct: 218 YVSWI 222

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/197 (29%), Positives = 90/197 (45%), Gaps = 14/197 (7%)
Query: 9   QVQVTLGDYVINSAVEPLPAY-TFGVRKINVHPYFKFTPQADRY----DVAVLRLDRPVQ 63
           Q   +L  ++ ++ VE L       +R+++VHP ++   Q + Y    D+A+L L+  V 
Sbjct: 206 QSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYR---QDESYNFEGDIALLELENSVT 262
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKS 123
             P++ PICLP+   D                        L+ V +P+ + + CE W + 
Sbjct: 263 LGPNLLPICLPDN--DTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRG 320
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME--RTGRWFLIGIVSAGYSCAQQGQP 181
                V    M CAG+    +D+CQGDSGG   +    T RW   GIVS G  C++    
Sbjct: 321 KNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GY 378
Query: 182 GIYHRVAYTVDWISYIM 198
           G Y +V   VDWI   M
Sbjct: 379 GFYTKVLNYVDWIKKEM 395

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 80/185 (43%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            + LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 102 SVSLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++        L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVCAGK----LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 66  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 121
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 122 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 175
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGD+GGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 176 ITSNMFCAGYLEGGKDSCQGDAGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 231
Query: 190 TVDWI 194
            V WI
Sbjct: 232 YVSWI 236

>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO Determine The Conformational Dynamics Of Trypsin Length = 223

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP +      +  D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHPSYDSNTLNN--DIMLIKLKSAASLDSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 86/191 (45%), Gaps = 15/191 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            +V+V LG++ I    E    +    R I  HP   ++      D+ +++L +      +
Sbjct: 44  SRVEVRLGEHNIK-VTEGSEQFISSSRVIR-HP--NYSSYNIDNDIMLIKLSKSATLNTY 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           + P+ LP                      S      LQ +++PI+    C     +N   
Sbjct: 100 VQPVALPSSCAPAGTMCTVSGWGNTMS--STADKNKLQCLNIPILSYSDC-----NNSYP 152
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
            +I + M CAGY  G KDSCQGDSGGP++        L G+VS GY CA+ G PG+Y +V
Sbjct: 153 GMITNAMFCAGYLEGGKDSCQGDSGGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKV 208
Query: 188 AYTVDWISYIM 198
               DW++  M
Sbjct: 209 CIFNDWLTSTM 219

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 82/187 (43%), Gaps = 14/187 (7%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            ++QV LG++ IN  +E    +     KI  HP   F  +    D+ +++L  PV+    
Sbjct: 44  SRIQVRLGEHNIN-VLEGNEQFV-NAAKIIKHP--NFDRKTLNNDIMLIKLSSPVKLNAR 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A + LP                          P  LQ +D P++    CE  +      
Sbjct: 100 VATVALPSSCAPAGTQCLISGWGNTLSSGVN-EPDLLQCLDAPLLPQADCEASYPGK--- 155
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I D M+C G+  G K SCQGDSGGP++        L GIVS GY CA    P +Y +V
Sbjct: 156 --ITDNMVCVGFLEGGKGSCQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPDVYTKV 209
Query: 188 AYTVDWI 194
              VDWI
Sbjct: 210 CNYVDWI 216

>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease C1r Length = 328

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 90/197 (45%), Gaps = 14/197 (7%)
Query: 9   QVQVTLGDYVINSAVEPLPAY-TFGVRKINVHPYFKFTPQADRY----DVAVLRLDRPVQ 63
           Q   +L  ++ ++ VE L       +R+++VHP ++   Q + Y    D+A+L L+  V 
Sbjct: 138 QSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYR---QDESYNFEGDIALLELENSVT 194
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKS 123
             P++ PICLP+   D                        L+ V +P+ + + CE W + 
Sbjct: 195 LGPNLLPICLPDN--DTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRG 252
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME--RTGRWFLIGIVSAGYSCAQQGQP 181
                V    M CAG+    +D+CQGD+GG   +    T RW   GIVS G  C++    
Sbjct: 253 KNRMDVFSQNMFCAGHPSLKQDACQGDAGGVFAVRDPNTDRWVATGIVSWGIGCSR--GY 310
Query: 182 GIYHRVAYTVDWISYIM 198
           G Y +V   VDWI   M
Sbjct: 311 GFYTKVLNYVDWIKKEM 327

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGD GGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDXGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites Of Ser190 Trypsin-Like Serine Protease Drug Targets Length = 253

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  ICLP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen Activator 2-[6- (3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino- Pyrrolidin-1- Yl)-3, 5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid Complex Length = 253

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  ICLP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 253

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  ICLP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A Multi- Centered Short Hydrogen Bonding Network At The Active Site Length = 245

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  ICLP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  ICLP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  ICLP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score = 80.9 bits (198), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTS-XPDVLKCLKAPILSDSSCKSAYPGQ----- 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAG   G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGXLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score = 80.5 bits (197), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 82  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 139
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  ICLP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 140 IQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHY---Y 196
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 197 GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 256
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 257 VSHFLPWI 264

>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 253

Iteration: 1
 Score = 79.7 bits (195), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 86/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  ICLP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTICLPSMYNDPQFGTSCEITGFGKEASTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       D+CQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDACQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 97

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
           P  LQ   +P++ N  C+++  +      I D M+CAG  G    SC GDSGGPL+ ++ 
Sbjct: 4   PDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAGASG--VSSCMGDSGGPLVCKKN 56
Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           G W L+GIVS G S      PG+Y RV   V+W+
Sbjct: 57  GAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWV 90

>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed With A Synthetic Inhibitor Length = 96

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 7/94 (7%)
Query: 101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
           P  LQ   +P++ N  C+++  +      I D M+CAG  G    SC GDSGGPL+ ++ 
Sbjct: 3   PDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAGASG--VSSCMGDSGGPLVCKKN 55
Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           G W L+GIVS G S      PG+Y RV   V+W+
Sbjct: 56  GAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWV 89

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 92/195 (47%), Gaps = 15/195 (7%)
Query: 16  DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE 75
           ++  N  V+P P     V KI +H   K++  ++  D+A++++  PV     I P CLP+
Sbjct: 68  EWGTNKPVKP-PLQERYVEKIIIHE--KYSASSEANDIALMKITPPVTCGHFIGPGCLPQ 124
Query: 76  --KGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCE--RWHKSNGINVVIY 131
              G                   +R     LQ   V +ID   C   RW+     N  I 
Sbjct: 125 FRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWY-----NGRIR 179
Query: 132 DEMMCAGYRGGAKDSCQGDSGGPLMMERTGR--WFLIGIVSAGYSCAQQGQPGIYHRVAY 189
              +CAGY  G  D+CQGDSGGPLM + +    + ++GI S G  CA+  +PG+Y     
Sbjct: 180 STNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWS 239
Query: 190 TVDWI-SYIMNTATN 203
            ++WI S I +TA +
Sbjct: 240 YLNWIASKIGSTAVH 254

>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai) Bt.D1 Length = 223

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSAI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KD+CQGDSGGP++   +G+  L GIVS G  CAQ+ +PGIY +V  
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGIYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of Porcine Epsilon-Trypsin Length = 98

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 39/94 (41%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
           P  LQ +  P++ N  C+  +        I   M+C G+  G KDSCQGDSGGP++    
Sbjct: 7   PSLLQCLKAPVLSNSSCKSSYPGQ-----ITGNMICVGFLQGGKDSCQGDSGGPVVCNGQ 61
Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
               L GIVS GY CAQ+ +PG+Y +V   V+WI
Sbjct: 62  ----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWI 91

>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed By Crystal Structure Of Human Urokinase-Type Plasminogen Activator Complexed With A Cyclic Peptidyl Inhibitor, Upain-1 Length = 253

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  I LP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssfi.Glu)bt.D1 Length = 223

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGEGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With 2- Amino-5-Hydroxy-Benzimidazole Length = 245

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  I LP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KD+CQGDSGGP++   +G+  L GIVS G  CAQ+ +PGIY +V  
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGIYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex Length = 253

Iteration: 1
 Score = 77.0 bits (188), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  I LP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KD+CQGDSGGP++   +G+  L GIVS G  CAQ+ +PGIY +V  
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVC--SGK--LQGIVSWGEGCAQKNKPGIYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGFYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase Length = 246

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  I LP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And 5-Nitro-1h-Indole-2- Amidine Length = 246

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  I LP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator Length = 247

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  I LP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Ssyi)bt.B4 Length = 223

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSYI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 74  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 131
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  I LP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 132 IQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 190
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 191 --EVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 248
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 249 VSHFLPWI 256

>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Sswi)bt.B4 Length = 223

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSWI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin Variant X(99175190)BT Length = 223

Iteration: 1
 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KD+CQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri) Bt.C1 Length = 223

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+          +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSASSR-----I 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KDSCQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDSCQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Variant X(Triple.Glu)bt.D2 Length = 223

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KD+CQGDSGGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVC--SGK--LQGIVSWGEGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH Inhibitors Length = 253

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 85/188 (45%), Gaps = 10/188 (5%)
Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL----DRPVQYMPH 67
           V LG   +NS  +      F V  + +H  +     A   D+A+L++     R  Q    
Sbjct: 59  VYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRT 116
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           I  I LP    D                 +  L P+ L+   V +I +R+C++ H     
Sbjct: 117 IQTIALPSMYNDPQFGTSCEITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGS- 175
Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              +  +M+CA       DSCQGD+GGPL+    GR  L GIVS G  CA + +PG+Y R
Sbjct: 176 --EVTTKMLCAADPQWKTDSCQGDAGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTR 233
Query: 187 VAYTVDWI 194
           V++ + WI
Sbjct: 234 VSHFLPWI 241

>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The Venom Of Copperhead Snake Agkistrodon Contortrix Contortrix Length = 231

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 80/175 (45%), Gaps = 15/175 (8%)
Query: 33  VRKINVHPYFKFTPQADRY---DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXX 89
           +R+     YF    + D     D+ ++RL+RPV+   HIAP+ LP               
Sbjct: 63  LRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGSVCRIMGW 122
Query: 90  XXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQG 149
                  + L P      ++ I+D   C+  +K       +    +CAG   G KD+C+G
Sbjct: 123 GTITSPNATL-PDVPHCANINILDYAVCQAAYKG------LAATTLCAGILEGGKDTCKG 175
Query: 150 DSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMNTATN 203
           DSGGPL+          GI+S G + CAQ  +PGIY +V    DWI  I++  T+
Sbjct: 176 DSGGPLICNGQ----FQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGNTD 226

>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KD+CQGDSGGP++   +G+  L GIVS G  CAQ+ +PG Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGFYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala ( Ta) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KD+CQGD+GGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDAGGPVVC--SGK--LQGIVSWGSGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tga) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 84/185 (45%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KD+CQGD+GGP++   +G+  L GIVS G  CAQ+ +PG+Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDAGGPVVC--SGK--LQGIVSWGEGCAQKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With Benzamidine Length = 220

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 85/191 (44%), Gaps = 19/191 (9%)
Query: 10  VQVTLGDYVI--NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
           ++V LG++ I  N   E   + +  +R    HP   ++      D+ +++L +P     +
Sbjct: 46  LRVRLGEHHIRVNEGTEQYISSSSVIR----HP--NYSSYNINNDIMLIKLTKPATLNQY 99
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +  + LP   E                  S      LQ + +PI+ +  C     +N   
Sbjct: 100 VHAVALPT--ECAADATMCTVSGWGNTMSSVADGDKLQCLSLPILSHADC-----ANSYP 152
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
            +I   M CAGY  G KDSCQGDSGGP++        L G+VS GY CA++  PG+Y +V
Sbjct: 153 GMITQSMFCAGYLEGGKDSCQGDSGGPVVCNG----VLQGVVSWGYGCAERDHPGVYAKV 208
Query: 188 AYTVDWISYIM 198
                W+   M
Sbjct: 209 CVLSGWVRDTM 219

>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto Catalyticaly Produced Native Peptide At 2.15 A Resolution Length = 98

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
           P  LQ +  P++ +  C+  +        I   M+C G+  G KDSCQGDSGGP++    
Sbjct: 7   PSLLQCLKAPVLSDSSCKSSYPGQ-----ITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ 61
Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
               L GIVS GY CAQ+ +PG+Y +V   V+WI
Sbjct: 62  ----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWI 91

>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KD+CQGDSGGP++   +G+  L GIVS G  CAQ+ +PG Y ++  
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDSGGPVVC--SGK--LQGIVSWGSGCAQKNKPGFYTKLCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KD+CQGD+GGP++   +G+  L GIVS G  CAQ+ +PG Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDAGGPVVC--SGK--LQGIVSWGSGCAQKNKPGFYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tgpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 83/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAGY  G KD+CQGD+GGP++   +G+  L GIVS G  CAQ+ +PG Y +V  
Sbjct: 156 ITSNMFCAGYLEGGKDACQGDAGGPVVC--SGK--LQGIVSWGEGCAQKNKPGFYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 59/199 (29%), Positives = 90/199 (45%), Gaps = 13/199 (6%)
Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           +S+R  +V LG + + S  EP  +    V K+ VH  +     ++  D+A+L+L  PV  
Sbjct: 48  SSSRTYRVVLGRHSL-STNEP-GSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSL 105
Query: 65  MPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCER--WHK 122
              I   CLP  G                   +   P  LQ   + ++D   C +  W  
Sbjct: 106 TDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWG 165
Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME-RTGRWFLIGIVSAGYS--CAQQG 179
           S      +   M+CAG   G   SC GDSGGPL  +   G+W + GIVS G S  C    
Sbjct: 166 S-----TVKTNMICAG-GDGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYH 219
Query: 180 QPGIYHRVAYTVDWISYIM 198
           +P ++ RV+  +DWI+ ++
Sbjct: 220 KPSVFTRVSNYIDWINSVI 238

>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 82/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLXSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M C GY  G KD+CQGDSGGP++   +G+  L GIVS G  CAQ+ +PG Y +V  
Sbjct: 156 ITSNMFCVGYLEGGKDACQGDSGGPVVC--SGK--LQGIVSWGEGCAQKNKPGFYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 82/185 (44%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +  +    D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSETYNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +         +  + +
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSS-----CKSASSFI 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M C GY  G KD+CQGDSGGP++   +G+  L GIVS G  CAQ+ +PG Y +V  
Sbjct: 156 ITSNMFCVGYLEGGKDACQGDSGGPVVC--SGK--LQGIVSWGEGCAQKNKPGFYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 83/182 (45%), Gaps = 14/182 (7%)
Query: 20  NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPE--KG 77
           N  V+P P     V +I +H   K+    +  D+A++++  PV   P I P CLP+   G
Sbjct: 72  NKPVKP-PLQERFVEEIIIHE--KYVSGLEINDIALIKITPPVPCGPFIGPGCLPQFKAG 128
Query: 78  EDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCE--RWHKSNGINVVIYDEMM 135
                                    TLQ   V +ID   C   RW+     N  I    +
Sbjct: 129 PPRAPQTCWVTGWGYLKEKGPRTSPTLQEARVALIDLELCNSTRWY-----NGRIRSTNV 183
Query: 136 CAGYRGGAKDSCQGDSGGPLMM-ERTGRWF-LIGIVSAGYSCAQQGQPGIYHRVAYTVDW 193
           CAGY  G  D+CQGDSGGPLM  +R    F ++GI S G  CA+  +PG+Y      ++W
Sbjct: 184 CAGYPRGKIDTCQGDSGGPLMCRDRAENTFVVVGITSWGVGCARAKRPGVYTSTWPYLNW 243
Query: 194 IS 195
           I+
Sbjct: 244 IA 245

>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (bpti) Length = 224

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 83/186 (44%), Gaps = 14/186 (7%)
Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHI 68
           ++QV LG++ I   +E    +     KI  HP  ++  +    D+ +++L        H+
Sbjct: 45  RIQVRLGEHNI-EVLEGNEQF-INAAKIIRHP--QYDRKTLNNDIMLIKLSSRAVINAHV 100
Query: 69  APICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
           + I LP                      +   P  LQ +D P++   +CE  +       
Sbjct: 101 STISLPTAPPATGTKCLISGWGNTASSGADY-PDELQCLDAPVLSQAKCEASYPGK---- 155
Query: 129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA 188
            I   M C G+  G KDSCQGD+GGP++        L G+VS G  CAQ+ +PG+Y +V 
Sbjct: 156 -ITSNMFCVGFLEGGKDSCQGDAGGPVVCNGQ----LQGVVSWGDGCAQKNKPGVYTKVY 210
Query: 189 YTVDWI 194
             V WI
Sbjct: 211 NYVKWI 216

>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 99

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
           P+ LQ   +PI+    C++   S      I D M CAG  G   DSC GDSGGPL+ ++ 
Sbjct: 6   PEKLQQAALPIVSEADCKKSWGSK-----ITDVMTCAGASG--VDSCMGDSGGPLVCQKD 58
Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           G W L GIVS G        PG+Y RV   + W+  I+ 
Sbjct: 59  GVWTLAGIVSWGSGVCSTSTPGVYSRVTALMPWVQQILE 97

>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected Phosphorylation Of Tyrosine 151 Length = 224

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 51/94 (54%), Gaps = 9/94 (9%)
Query: 101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
           P  LQ +D P++   +CE  +        I   M C G+  G KDSCQGDSGGP++    
Sbjct: 132 PDELQCLDAPVLSQAKCEASYPGK-----ITSNMFCVGFLEGGKDSCQGDSGGPVVCNGQ 186
Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
               L G+VS G  CAQ+ +PG+Y +V   V WI
Sbjct: 187 ----LQGVVSWGDGCAQKNKPGVYTKVYNYVKWI 216

>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With Porcine Elastase Length = 240

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 32  GVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXX 91
           GV+KI VHPY+     A  YD+A+LRL + V    ++    LP  G              
Sbjct: 73  GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGW 132
Query: 92  XXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDS 151
                +    +TLQ   +P +D   C     S+     + + M+CAG   G +  CQGDS
Sbjct: 133 GLTRTNGQLAQTLQQAYLPTVDYAICS---SSSYWGSTVKNSMVCAG-GDGVRSGCQGDS 188
Query: 152 GGPLMMERTGRWFLIGIVS--AGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           GGPL     G++ + G+ S  +   C    +P ++ RV+  + WI+ ++
Sbjct: 189 GGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl Dipeptide Anilide Inhibitor With Elastase Length = 240

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 32  GVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXX 91
           GV+KI VHPY+     A  YD+A+LRL + V    ++    LP  G              
Sbjct: 73  GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGW 132
Query: 92  XXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDS 151
                +    +TLQ   +P +D   C     S+     + + M+CAG   G +  CQGDS
Sbjct: 133 GLTRTNGQLAQTLQQAYLPTVDYAICS---SSSYWGSTVKNSMVCAG-GDGVRSGCQGDS 188
Query: 152 GGPLMMERTGRWFLIGIVS--AGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           GGPL     G++ + G+ S  +   C    +P ++ RV+  + WI+ ++
Sbjct: 189 GGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase And Human Beta-Casomorphin-7 At Ph 5 Length = 240

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 6/169 (3%)
Query: 32  GVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXX 91
           GV+KI VHPY+     A  YD+A+LRL + V    ++    LP  G              
Sbjct: 73  GVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILRNNSPCYITGW 132
Query: 92  XXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDS 151
                +    +TLQ   +P +D   C     S+     + + M+CAG   G +  CQGDS
Sbjct: 133 GLTRTNGQLAQTLQQAYLPTVDYAICS---SSSYWGSTVKNSMVCAG-GDGVRSGCQGDS 188
Query: 152 GGPLMMERTGRWFLIGIVS--AGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           GGPL     G++ + G+ S  +   C    +P ++ RV+  + WI+ ++
Sbjct: 189 GGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVI 237

>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor Length = 102

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 10/105 (9%)
Query: 100 RPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR---GGAKDSCQGDSGGPLM 156
           +P  LQ V++PI++   C+     +   + I D M CAGY+   G   D+C+GDSGGP +
Sbjct: 2   QPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 56
Query: 157 MER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           M+     RW+ +GIVS G  C + G+ G Y  V     WI  +++
Sbjct: 57  MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 101

>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin Length = 105

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 10/105 (9%)
Query: 100 RPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR---GGAKDSCQGDSGGPLM 156
           +P  LQ V++PI++   C+     +   + I D M CAGY+   G   D+C+GDSGGP +
Sbjct: 2   QPSVLQVVNLPIVERPVCK-----DSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFV 56
Query: 157 MER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           M+     RW+ +GIVS G  C + G+ G Y  V     WI  +++
Sbjct: 57  MKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 101

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 84/186 (45%), Gaps = 14/186 (7%)
Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHI 68
           ++QV LG++ I   +E    +   V+ I  HP  K+       D+ +++L  P      +
Sbjct: 45  RIQVRLGEHNI-KVLEGNEQFINAVKIIR-HP--KYNRDTLDNDIMLIKLSSPAVINARV 100
Query: 69  APICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
           + I LP                      +   P  L+ +D P++   +C+  +       
Sbjct: 101 STISLPTAPPAAGTECLISGWGNTLSFGADY-PDELKCLDAPVLTQAECKASYPGK---- 155
Query: 129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA 188
            I + M C G+  G KDSCQ DSGGP++        L G+VS G+ CA + +PG+Y +V 
Sbjct: 156 -ITNSMFCVGFLEGGKDSCQRDSGGPVVCNGQ----LQGVVSWGHGCAWKNRPGVYTKVY 210
Query: 189 YTVDWI 194
             VDWI
Sbjct: 211 NYVDWI 216

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 17/185 (9%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CAG  GG  DSCQGDSGGP++   +G+  L GIVS G  CA+  +PG+Y +V  
Sbjct: 156 ITSNMFCAGLEGG--DSCQGDSGGPVVC--SGK--LQGIVSWGSGCAKN-KPGVYTKVCN 208
Query: 190 TVDWI 194
            V WI
Sbjct: 209 YVSWI 213

>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 99

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
           P+ LQ   +PI+    C++   S      I D M CAG  G   DSC GDSGGPL+ ++ 
Sbjct: 6   PEKLQQAALPIVSEADCKKSWGSK-----ITDVMTCAGASG--VDSCMGDSGGPLVCQKD 58
Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           G W L GIVS G        P +Y RV   + W+  I+ 
Sbjct: 59  GVWTLAGIVSWGSGVCSTSTPAVYSRVTALMPWVQQILE 97

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 14/195 (7%)
Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           A+  +VQV LG + + S  EP       +R +   P+  + P    +D+ +L+L      
Sbjct: 46  AADGKVQVLLGAHSL-SQPEPSKRLYDVLRAV---PHPDYQPDTIDHDLLLLQLSEKATL 101
Query: 65  MPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
            P + P+       D                 +  RP +LQ V +P++D   C R    +
Sbjct: 102 GPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHD 161
Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGI 183
           G    I + +MCA      +DSC+GDSGGPL+        L G+VS G   C  + +PGI
Sbjct: 162 G---AITERLMCA--ESNRRDSCKGDSGGPLVCGG----VLEGVVSWGSRVCGNRKKPGI 212
Query: 184 YHRVAYTVDWISYIM 198
           Y RVA    WI  ++
Sbjct: 213 YTRVASYAAWIDSVL 227

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 31  FGVRKINVHPYFKFTPQADRYD--VAVLRL----DRPVQYMPHIAPICLPEKGEDXXXXX 84
           F V K  VH  F      D YD  +A+L+L     R  Q    +  +CLP    D     
Sbjct: 77  FEVEKYIVHKEF----DDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPA--DLQLPD 130
Query: 85  XXXXXXXXXXXXSRLRP---KTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAG-YR 140
                         L P   + L+   V +  + +C   H    +N  + D M+CAG  R
Sbjct: 131 WTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHL---LNRTVTDNMLCAGDTR 187
Query: 141 GGA-----KDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
            G       D+CQGDSGGPL+    GR  L+GI+S G  C Q+  PG+Y +V   +DWI
Sbjct: 188 SGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWI 246

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score = 70.9 bits (172), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 91/196 (46%), Gaps = 16/196 (8%)
Query: 5   ASARQVQVTLGDYVINSAVEPLPAY-TFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 63
           A+  +VQV LG + ++   +P P+   + V +   HP  +  P    +D+ +L+L     
Sbjct: 46  AADGKVQVLLGAHSLS---QPEPSKRLYDVLRAVPHPDSQ--PDTIDHDLLLLQLSEKAT 100
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKS 123
             P + P+       D                 +  RP +LQ V +P++D   C R    
Sbjct: 101 LGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH 160
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPG 182
           +G    I + +MCA      +DSC+GDSGGPL+        L G+V++G + C  + +PG
Sbjct: 161 DG---AITERLMCA--ESNRRDSCKGDSGGPLVCG----GVLEGVVTSGSAVCGNRKKPG 211
Query: 183 IYHRVAYTVDWISYIM 198
           IY RVA    WI  ++
Sbjct: 212 IYTRVASYAAWIDSVL 227

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 79/179 (44%), Gaps = 24/179 (13%)
Query: 31  FGVRKINVHPYFKFTPQADRYD--VAVLRL----DRPVQYMPHIAPICLPEKGEDXXXXX 84
           F V K  VH  F      D YD  +A+L+L     R  Q    +  +CLP    D     
Sbjct: 90  FEVEKYIVHKEF----DDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPA--DLQLPD 143
Query: 85  XXXXXXXXXXXXSRLRP---KTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAG-YR 140
                         L P   + L+   V +  + +C   H    +N  + D M+CAG  R
Sbjct: 144 WTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHL---LNRTVTDNMLCAGDTR 200
Query: 141 GGA-----KDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
            G       D+CQGDSGGPL+    GR  L+GI+S G  C Q+  PG+Y +V   +DWI
Sbjct: 201 SGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWI 259

>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 109

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 10/108 (9%)
Query: 97  SRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR---GGAKDSCQGDSGG 153
           + ++P  LQ V++P+++   C+         + I D M CAGY+   G   D+C+GDSGG
Sbjct: 3   AEVQPSVLQVVNLPLVERPVCK-----ASTRIRITDNMFCAGYKPGEGKRGDACEGDSGG 57
Query: 154 PLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           P +M+     RW+ +GIVS G  C + G+ G Y  V     WI  +++
Sbjct: 58  PFVMKSPYNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVID 105

>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution Length = 224

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 12/166 (7%)
Query: 30  TFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXX 89
           T  +  + VHP +      +  D+A+L+L   +    +I    L   G D          
Sbjct: 66  TSSLSSVRVHPSYS----GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVA 121
Query: 90  X-XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
                       P  L  V VPI+    C   + ++     I ++M CAG   G KDSCQ
Sbjct: 122 GWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS----AITNQMFCAGVSSGGKDSCQ 177
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GDSGGP++        LIG VS G  CA+    G+Y  V     +I
Sbjct: 178 GDSGGPIVDSSN---TLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To Atomic Resolution Length = 224

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 68/166 (40%), Gaps = 12/166 (7%)
Query: 30  TFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXX 89
           T  +  + VHP +      +  D+A+L+L   +    +I    L   G D          
Sbjct: 66  TSSLSSVRVHPSYS----GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVA 121
Query: 90  X-XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
                       P  L  V VPI+    C   + ++     I ++M CAG   G KDSCQ
Sbjct: 122 GWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS----AITNQMFCAGVSSGGKDSCQ 177
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GDSGGP++        LIG VS G  CA+    G+Y  V     +I
Sbjct: 178 GDSGGPIVDSSN---TLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 16/196 (8%)
Query: 5   ASARQVQVTLGDYVINSAVEPLPAY-TFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 63
           A+  +VQV LG + ++   +P P+   + V +   HP  +  P    +D+ +L+L     
Sbjct: 46  AADGKVQVLLGAHSLS---QPEPSKRLYDVLRAVPHPDSQ--PDTIDHDLLLLQLSEKAT 100
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKS 123
             P + P+       D                 +  RP +LQ V +P++D   C R    
Sbjct: 101 LGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH 160
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPG 182
           +G    I + +MCA      +DSC+GDSGGPL+        L G+V++G   C  + +PG
Sbjct: 161 DG---AITERLMCA--ESNRRDSCKGDSGGPLVCG----GVLEGVVTSGSRVCGNRKKPG 211
Query: 183 IYHRVAYTVDWISYIM 198
           IY RVA    WI  ++
Sbjct: 212 IYTRVASYAAWIDSVL 227

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 16/196 (8%)
Query: 5   ASARQVQVTLGDYVINSAVEPLPAY-TFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 63
           A+  +VQV LG + ++   +P P+   + V +   HP  +  P    +D+ +L+L     
Sbjct: 53  AADGKVQVLLGAHSLS---QPEPSKRLYDVLRAVPHPDSQ--PDTIDHDLLLLQLSEKAT 107
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKS 123
             P + P+       D                 +  RP +LQ V +P++D   C R    
Sbjct: 108 LGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH 167
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPG 182
           +G    I + +MCA      +DSC+GDSGGPL+        L G+V++G   C  + +PG
Sbjct: 168 DG---AITERLMCA--ESNRRDSCKGDSGGPLVCG----GVLEGVVTSGSRVCGNRKKPG 218
Query: 183 IYHRVAYTVDWISYIM 198
           IY RVA    WI  ++
Sbjct: 219 IYTRVASYAAWIDSVL 234

>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6 Subunit Iii, A Highly Structured Truncated Zymogen E Length = 240

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 14/196 (7%)
Query: 5   ASARQVQVTLGDY---VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
           +++R  QV LG+Y   V+  + + +P        + VHP +     A   D+A+++L R 
Sbjct: 46  STSRTYQVVLGEYDRSVLEGSEQVIP---INAGDLFVHPLWNSNCVACGNDIALVKLSRS 102
Query: 62  VQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWH 121
            Q    +    LP  G+                      P  LQ   +P +D   C +W 
Sbjct: 103 AQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQW- 161
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT-GRWFLIGIVS--AGYSCAQQ 178
             +   + +   M+CAG  G  +  C GDSGGPL      G W + G+ S  + + C   
Sbjct: 162 --DWWGITVKKTMVCAG--GDTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTI 217
Query: 179 GQPGIYHRVAYTVDWI 194
            +P ++ RV+  +DWI
Sbjct: 218 KKPTVFTRVSAFIDWI 233

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 14/186 (7%)
Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHI 68
           ++QV LG++  N  V           KI  HP  K+       D+ +++L  P      +
Sbjct: 45  RIQVRLGEH--NIKVLEGNEQFINAAKIIRHP--KYNRDTLDNDIMLIKLSSPAVINARV 100
Query: 69  APICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
           + I LP                      +   P  L+ +D P++   +C+  +       
Sbjct: 101 STISLPTAPPAAGTECLISGWGNTLSFGADY-PDELKCLDAPVLTQAECKASYPGK---- 155
Query: 129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA 188
            I + M C G+  G KDSCQ D+GGP++        L G+VS G+ CA + +PG+Y +V 
Sbjct: 156 -ITNSMFCVGFLEGGKDSCQRDAGGPVVCNGQ----LQGVVSWGHGCAWKNRPGVYTKVY 210
Query: 189 YTVDWI 194
             VDWI
Sbjct: 211 NYVDWI 216

>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 224

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 14/186 (7%)
Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHI 68
           ++QV LG++  N  V           KI  HP  K+       D+ +++L  P      +
Sbjct: 45  RIQVRLGEH--NIKVLEGNEQFINAAKIIRHP--KYNRDTLDNDIMLIKLSSPAVINARV 100
Query: 69  APICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
           + I LP                      +   P  L+ +D P++   +C+  +       
Sbjct: 101 STISLPTAPPAAGTECLISGWGNTLSFGADY-PDELKCLDAPVLTQAECKASYPGK---- 155
Query: 129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA 188
            I + M C G+  G KDSCQ D+GGP++        L G+VS G+ CA + +PG+Y +V 
Sbjct: 156 -ITNSMFCVGFLEGGKDSCQRDAGGPVVCNGQ----LQGVVSWGHGCAWKNRPGVYTKVY 210
Query: 189 YTVDWI 194
             VDWI
Sbjct: 211 NYVDWI 216

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 5   ASARQVQVTLGDYVINSAVEPLPAY-TFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 63
           A+  +VQV LG + ++   +P P+   + V +   HP  +  P    +D+ +L+L     
Sbjct: 46  AADGKVQVLLGAHSLS---QPEPSKRLYDVLRAVPHPDSR--PDTIDHDLLLLQLSEKAT 100
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKS 123
             P + P+       D                 +  RP  LQ V +P++D   C R    
Sbjct: 101 LGPAVRPLPWQRVDRDVEPGTLCDVAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHH 160
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPG 182
           +G    I   MMCA      +DSC+GDSGGPL+        L G+V++G   C  + +PG
Sbjct: 161 DG---AITQRMMCA--ESNRRDSCKGDSGGPLVCG----GVLEGVVTSGSRVCGNRKKPG 211
Query: 183 IYHRVAYTVDWISYIM 198
           IY RVA    WI  ++
Sbjct: 212 IYTRVASYAAWIDSVL 227

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 25/187 (13%)
Query: 27  PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLP------EKGEDX 80
           P    G+ K  +H   K+  +   +D+A+L+L+R V +  HI PICLP      EK E  
Sbjct: 200 PVVNVGIEKHLIHE--KYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQI 257
Query: 81  XXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR 140
                           S +    LQA +VP+     C + ++       +    +C G  
Sbjct: 258 STYFVTGWGTTENGSSSDV---LLQA-NVPLQPRSACSQAYRR-----AVPLSQLCVG-G 307
Query: 141 GGAKDSCQGDSGGPL------MMERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDW 193
           G  +DSC+GDSGGPL      + E   +    GIVS G  +C Q   PG+Y  V   V W
Sbjct: 308 GDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQW 367
Query: 194 ISYIMNT 200
           I+  M +
Sbjct: 368 ITDTMAS 374

>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt Length = 230

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 104 LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGY-RGGAKDSCQGDSGGPLM-MERTG 161
           L   +VP + +  C    +S+   +++ +EM+CAGY   G  D+CQGDSGGP+   +   
Sbjct: 135 LLKANVPFVSDAAC----RSSSSFILVANEMICAGYPDTGGVDTCQGDSGGPMFRKDNAD 190
Query: 162 RWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
            W  +GIVS GY CA+ G PG+Y  V+     I+    T
Sbjct: 191 EWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAART 229

>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The Molecular Determinants Of Substrate Specificity Length = 234

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 86/197 (43%), Gaps = 12/197 (6%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
           ++ QV LG + I    EP        ++    PY  + P     D+ +L+L    +   +
Sbjct: 46  KRSQVILGAHSITRE-EPTKQIMLVKKEF---PYPCYDPATREGDLKLLQLTEKAKINKY 101
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +  + LP+KG+D                 S     TL+ V++ IID + C   +  N  N
Sbjct: 102 VTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYN-FN 160
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS--CAQQGQPGIYH 185
            VI   M+CAG   G +DSC GDSG PL+ E   R    G+ S G    C     PG+Y 
Sbjct: 161 PVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEGVFR----GVTSFGLENKCGDPRGPGVYI 216
Query: 186 RVAYT-VDWISYIMNTA 201
            ++   ++WI   +  A
Sbjct: 217 LLSKKHLNWIIMTIKGA 233

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 90/196 (45%), Gaps = 16/196 (8%)
Query: 5   ASARQVQVTLGDYVINSAVEPLPAY-TFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 63
           A+  +VQV LG + ++   +P P+   + V +   HP  +  P    +D+ +L+L     
Sbjct: 46  AADGKVQVLLGAHSLS---QPEPSKRLYDVLRAVPHPDSQ--PDTIDHDLLLLQLSEKAT 100
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKS 123
             P + P+       D                 +  RP +LQ V +P++D   C R    
Sbjct: 101 LGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH 160
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPG 182
           +G    I + +MCA      +DSC+GD+GGPL+        L G+V++G   C  + +PG
Sbjct: 161 DG---AITERLMCA--ESNRRDSCKGDAGGPLVCG----GVLEGVVTSGSRVCGNRKKPG 211
Query: 183 IYHRVAYTVDWISYIM 198
           IY RVA    WI  ++
Sbjct: 212 IYTRVASYAAWIDSVL 227

>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A Length = 234

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 12/190 (6%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
           ++ QV LG + I    EP        ++    PY  + P     D+ +L+L    +   +
Sbjct: 46  KRSQVILGAHSITRE-EPTKQIMLVKKEF---PYPCYDPATREGDLKLLQLTEKAKINKY 101
Query: 68  IAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +  + LP+KG+D                 S     TL+ V++ IID + C   +  N  N
Sbjct: 102 VTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYN-FN 160
Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS--CAQQGQPGIYH 185
            VI   M+CAG   G +DSC GDSG PL+ E   R    G+ S G    C     PG+Y 
Sbjct: 161 PVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEGVFR----GVTSFGLENKCGDPRGPGVYI 216
Query: 186 RVAYT-VDWI 194
            ++   ++WI
Sbjct: 217 LLSKKHLNWI 226

>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution Length = 224

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 67/166 (40%), Gaps = 12/166 (7%)
Query: 30  TFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXX 89
           T  +  + VHP +      +  D+A+L+L   +    +I    L   G D          
Sbjct: 66  TSSLSSVRVHPSYS----GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVA 121
Query: 90  X-XXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
                       P  L  V VPI+    C   + ++     I ++M CAG   G KDSCQ
Sbjct: 122 GWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS----AITNQMFCAGVSSGGKDSCQ 177
Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           GD GGP++        LIG VS G  CA+    G+Y  V     +I
Sbjct: 178 GDXGGPIVDSSN---TLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 78/185 (42%), Gaps = 14/185 (7%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG+  IN  VE    +    + I VHP   +       D+ +++L         +A
Sbjct: 46  IQVRLGEDNIN-VVEGNEQFISASKSI-VHP--SYNSNTLNNDIMLIKLKSAASLNSRVA 101
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
            I LP                      +   P  L+ +  PI+ +  C+  +        
Sbjct: 102 SISLPTSCASAGTQCLISGWGNTKSSGTSY-PDVLKCLKAPILSDSSCKSAYPGQ----- 155
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I   M CA    G  DSCQGDSGGP++   +G+  L GIVS G  C  + +PG+Y +V  
Sbjct: 156 ITSNMFCAYGLEGKGDSCQGDSGGPVVC--SGK--LQGIVSWGSGCQAKNKPGVYTKVCN 211
Query: 190 TVDWI 194
            V WI
Sbjct: 212 YVSWI 216

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 21  SAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDX 80
           S   P P +   + + ++    +F       D+ +LRL +P      + PI LP   E+ 
Sbjct: 69  SKAIPHPGFNMSLMRKHI----RFLEYDYSNDLMLLRLSKPADITDTVKPITLPT--EEP 122
Query: 81  XXXXXXXXXXXXXXXXSRLR-PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGY 139
                           ++ +    L  V++ ++ N  C + H        + D M+CAG 
Sbjct: 123 KLGSTCLASGWGSITPTKFQFTDDLYCVNLKLLPNEDCAKAHIEK-----VTDAMLCAGE 177
Query: 140 RGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIM 198
             G KD+C+GDSGGPL+ +      L GI S G++ C +   PG+Y ++     WI   M
Sbjct: 178 MDGGKDTCKGDSGGPLICDGV----LQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKDTM 233

>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 253

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 14/197 (7%)
Query: 5   ASARQVQVTLGDY---VINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
           +++R  QV LG+Y   V+  + + +P        + VHP +     A   D+A+++L R 
Sbjct: 59  STSRTYQVVLGEYDRSVLQGSEQVIP---INAGDLFVHPLWNSNCVACGNDIALVKLSRS 115
Query: 62  VQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWH 121
            Q    +    LP  G+                      P  LQ   +P++D   C ++ 
Sbjct: 116 AQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQEALLPVVDYEHCSQY- 174
Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT-GRWFLIGIVS--AGYSCAQQ 178
             +   + +   M+CAG  G  +  C GDSGGPL      G W + G+ S  + + C   
Sbjct: 175 --DWWGITVKKTMVCAG--GDTRSGCDGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTI 230
Query: 179 GQPGIYHRVAYTVDWIS 195
            +P ++ RV+  +DWI+
Sbjct: 231 KKPTVFTRVSAFIDWIN 247

>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North Atlantic Salmon At 1.61 Angstroms Resolution Length = 236

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 9/195 (4%)
Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           SAR  +V LG++ +N+        T  V  + +H  +     A  YD+A+LRL+      
Sbjct: 49  SARTWRVVLGEHNLNTNEGKEQIMT--VNSVFIHSGWNSDDVAGGYDIALLRLNTQASLN 106
Query: 66  PHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNG 125
             +    LP   +                        +L+   +P +D+  C     S  
Sbjct: 107 SAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCS---SSGW 163
Query: 126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS--AGYSCAQQGQPGI 183
               +   M+CAG  GGA   C GDSGGPL  +  G +++ G+ S  +   C    +P +
Sbjct: 164 WGSTVKTTMVCAG--GGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTV 221
Query: 184 YHRVAYTVDWISYIM 198
           + RV+  + W++ IM
Sbjct: 222 FTRVSAYISWMNGIM 236

>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt Length = 229

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 104 LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGR 162
           L   +VP + +  C    +S+   +++ +EM+CAGY    +D+CQGDSGGP+   +    
Sbjct: 135 LLKANVPFVSDAAC----RSSSSFILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADE 190
Query: 163 WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
           W  +GIVS G  CA++G+ G+Y  V+     I+    T
Sbjct: 191 WVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAART 228

>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor Protease Active Site Selectivity Length = 224

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 104 LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGR 162
           L   +VP + +  C    +S+   +++ +EM+CAGY    +D+CQGDSGGP+   +    
Sbjct: 130 LLKANVPFVSDAAC----RSSSSFILVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADE 185
Query: 163 WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
           W  +GIVS G  CA++G+ G+Y  V+     I+    T
Sbjct: 186 WVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAART 223

>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure Solution And Refinement At 1.8 Angstroms Resolution Length = 235

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPI 111
           D+ +L L  P      +  I LP K E                    +    LQ V++ +
Sbjct: 94  DLMLLHLSEPADITGGVKVIDLPTK-EPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHL 152
Query: 112 IDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSA 171
           + N +C   +K N     + D M+CAG   G KD+C GDSGGPL+ +      L GI S 
Sbjct: 153 LSNEKCIETYKDN-----VTDVMLCAGEMEGGKDTCAGDSGGPLICDG----VLQGITSG 203
Query: 172 GYS-CAQQGQPGIYHRVAYTVDWISYIM 198
           G + CA+   P IY ++     WI  +M
Sbjct: 204 GATPCAKPKTPAIYAKLIKFTSWIKKVM 231

>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With Leupeptin Length = 227

Iteration: 1
 Score = 66.6 bits (161), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 84/185 (45%), Gaps = 15/185 (8%)
Query: 11  QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAP 70
           +V LG Y ++   E       GV+ I   P+  ++      D+ +++L+R ++    + P
Sbjct: 49  RVRLGHYSLSPVYESGQQMFQGVKSI---PHPGYSHPGHSNDLMLIKLNRRIRPTKDVRP 105
Query: 71  ICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVI 130
           I +                           PK LQ +++ ++  ++CE  +        I
Sbjct: 106 INVSSHCPSAGTKCLVSGWGTTKSPQVHF-PKVLQCLNISVLSQKRCEDAYPRQ-----I 159
Query: 131 YDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAY 189
            D M CAG + G +DSCQGDSGGP++   +    L G+VS G Y CA+  +PG+Y  +  
Sbjct: 160 DDTMFCAGDKAG-RDSCQGDSGGPVVCNGS----LQGLVSWGDYPCARPNRPGVYTNLCK 214
Query: 190 TVDWI 194
              WI
Sbjct: 215 FTKWI 219

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 17/176 (9%)
Query: 36  INVHPYFKF--TPQADRY---DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXX 90
           + +HP +K    P+       D+A++RL  PV+  P ++PICLP    D           
Sbjct: 153 VFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLI 212
Query: 91  XX-XXXXSRLRPKTLQAVDVPIIDNRQCERWH----KSNGINVVIYDEMMCAGYRGGAKD 145
                   R R   L+A  +P+   R+C+        ++    V    M+CAG   G  D
Sbjct: 213 SGWGRTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEKGM-D 271
Query: 146 SCQGDSGGPLMMERTG---RWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           SC+GDSGG   ++      +++  G+VS G  C   G  G+Y RV   VDWI   M
Sbjct: 272 SCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQC---GTYGLYTRVKNYVDWIMKTM 324

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 87/197 (44%), Gaps = 12/197 (6%)
Query: 1   MTNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDR 60
           ++NT + R   V LG   +    E    Y  GV  I VH   K+     R D+A+++L  
Sbjct: 60  ISNTLTYR---VALGKNNLEVEDEAGSLYV-GVDTIFVHE--KWNSFLVRNDIALIKLAE 113
Query: 61  PVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERW 120
            V+    I   CLP +G                   +      LQ    P++D   C   
Sbjct: 114 TVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCS-- 171
Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS--AGYSCAQQ 178
            + +     + + M+CAG   G   +C GDSGGPL  +  G+W + GIVS  +G SC   
Sbjct: 172 -QRDWWGTTVKETMVCAG-GDGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTF 229
Query: 179 GQPGIYHRVAYTVDWIS 195
            +P ++ RV+  +DWI+
Sbjct: 230 KKPTVFTRVSAYIDWIN 246

>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 152

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 11/147 (7%)
Query: 50  RYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLR-PKTLQAVD 108
            +D+ +LRL  P +    +  + LP +  +                      P  +Q V 
Sbjct: 7   SHDLMLLRLQSPAKITDAVKVLELPTQEPELGSTCEASGWGSIEPGPDDFEFPDEIQCVQ 66
Query: 109 VPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGI 168
           + ++ N  C   H        + + M+CAGY  G KD+C GDSGGPL+    G W   GI
Sbjct: 67  LTLLQNTFCADAHPDK-----VTESMLCAGYLPGGKDTCMGDSGGPLIC--NGMW--QGI 117
Query: 169 VSAGYS-CAQQGQPGIYHRVAYTVDWI 194
            S G++ C    +P IY ++ + +DWI
Sbjct: 118 TSWGHTPCGSANKPSIYTKLIFYLDWI 144

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 72/176 (40%), Gaps = 18/176 (10%)
Query: 24  EPLPAYTFGVRKINVHPYFKFTPQADR---YDVAVLRLDRPVQYMPHIAPICLPEKGEDX 80
           E  P   F +  +  H     T QAD    +D+ +LRL  P   +     +      E  
Sbjct: 70  ESFPHPGFNMSLLENH-----TRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPE 124
Query: 81  XXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYR 140
                           +   P  LQ VD+ I+ N +C++ H        + D M+C G+ 
Sbjct: 125 VGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQK-----VTDFMLCVGHL 179
Query: 141 GGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGY-SCAQQGQPGIYHRVAYTVDWIS 195
            G KD+C GDSGGPLM +      L G+ S GY  C    +P +  RV   V WI 
Sbjct: 180 EGGKDTCVGDSGGPLMCDGV----LQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIE 231

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 84/198 (42%), Gaps = 23/198 (11%)
Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLDRPVQYMP 66
           ++  V LGD+ + S  +P       V +   HP Y    P+   +D+ ++RL        
Sbjct: 45  QKYSVRLGDHSLQSRDQP--EQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGD 102
Query: 67  HIAPICL----PEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHK 122
            + P+ L    P+ G+                      P TL   +V I    +CER + 
Sbjct: 103 KVKPVQLANLCPKVGQKCIISGWGTVTSPQENF-----PNTLNCAEVKIYSQNKCERAYP 157
Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQP 181
                  I + M+CAG   GA D+CQGDSGGPL+ +      L GI S G   C +  +P
Sbjct: 158 GK-----ITEGMVCAGSSNGA-DTCQGDSGGPLVCDG----MLQGITSWGSDPCGKPEKP 207
Query: 182 GIYHRVAYTVDWISYIMN 199
           G+Y ++     WI   M+
Sbjct: 208 GVYTKICRYTTWIKKTMD 225

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 72/176 (40%), Gaps = 20/176 (11%)
Query: 33  VRKINVHPYFKFT--------PQAD-RYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXX 83
           V K   HP F  +        P AD   D+ +LRL +P      + PI LP K E     
Sbjct: 68  VSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTK-EPKPGS 126
Query: 84  XXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGA 143
                           +P  LQ V + ++ N  C + +        + D M+CAG  GG 
Sbjct: 127 KCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQK-----VTDVMLCAGEMGGG 181
Query: 144 KDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIM 198
           KD+C+ DSGGPL+ +      L G  S G   C + G P IY  +     WI   M
Sbjct: 182 KDTCRDDSGGPLICDG----ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTM 233

>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 240

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 77/177 (43%), Gaps = 19/177 (10%)
Query: 26  LPAYTFGVRKINVHPYFKFTPQ-ADRY--DVAVLRLDRPVQYMPHIAPICLPEKGEDXXX 82
           +P   F +  +N H     TPQ  D Y  D+ +LRL +P      + PI LP + E    
Sbjct: 75  IPHPDFNMSLLNEH-----TPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTE-EPKLG 128
Query: 83  XXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGG 142
                             P  LQ V++ ++ N  C++ H+     + + D M+CAG   G
Sbjct: 129 STCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHE-----MKVTDAMLCAGEMDG 183
Query: 143 AKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIM 198
              +C+ DSGGPL+ +      L GI S G   C +  +P +Y ++     WI   M
Sbjct: 184 GSYTCEHDSGGPLICDG----ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM 236

>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Closed-Form) Length = 234

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 43  KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPK 102
           KF    D+ D+ ++RL RPV Y  HIAP+ LP +                    +   P 
Sbjct: 80  KFPNGLDK-DIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSRCRIMGWGKIS---TTTYPD 135
Query: 103 TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGR 162
                ++ I+ ++ CE  +      V      +CAG   G +D+C GDSGGPL+      
Sbjct: 136 VPHCTNIFIVKHKWCEPLYPW----VPADSRTLCAGILKGGRDTCHGDSGGPLICNGE-- 189
Query: 163 WFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIM 198
             + GIV+ G   C Q  +P +Y +V    +WI  I+
Sbjct: 190 --MHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSII 224

>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin Length = 223

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 104 LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGY-RGGAKDSCQGDSGGPLM-MERTG 161
           L   +VP + +  C   +     N ++ +E +CAGY   G  D+CQGDSGGP+   +   
Sbjct: 128 LLKANVPFVSDAACRSAYG----NELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNAD 183
Query: 162 RWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
            W  +GIVS GY CA+ G PG+Y  V+     I+    T
Sbjct: 184 EWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAART 222

>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin Length = 222

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 104 LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGR 162
           L   +VP + +  C   +     N ++ +E +CAGY  G  D+CQGDSGGP+   +    
Sbjct: 128 LLKANVPFVSDAACRSAYG----NELVANEEICAGYDTGGVDTCQGDSGGPMFRKDNADE 183
Query: 163 WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
           W  +GIVS G  CA++G+ G+Y  V+     I+    T
Sbjct: 184 WIQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAART 221

>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin At 1.7 Angstroms Resolution Length = 223

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 104 LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGY-RGGAKDSCQGDSGGPLM-MERTG 161
           L   +VP + +  C   +     N ++ +E +CAGY   G  D+CQGDSGGP+   +   
Sbjct: 128 LLKANVPFVSDAACRSAYG----NELVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNAD 183
Query: 162 RWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
            W  +GIVS GY CA+ G PG+Y  V+     I+    T
Sbjct: 184 EWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAART 222

>pdb|4GSO|A Chain A, Structure Of Jararacussin-I Length = 232

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 11/144 (7%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPI 111
           D+ +++LD+P+    HIAP+ LP                      +   P      ++ +
Sbjct: 85  DIMLIKLDKPISNSKHIAPLSLPSN-PPSVGSVCRIMGWGSITIPNETYPDVPYCANINL 143
Query: 112 IDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSA 171
           +D   C+  +     N +     +CAG   G KD+C GDSGGPL+     +    GIVS 
Sbjct: 144 VDYEVCQGAY-----NGLPAKTTLCAGVLEGGKDTCVGDSGGPLICNGQFQ----GIVSY 194
Query: 172 G-YSCAQQGQPGIYHRVAYTVDWI 194
           G +SC Q  +PGIY  V    DWI
Sbjct: 195 GAHSCGQGPKPGIYTNVFDYTDWI 218

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 86/198 (43%), Gaps = 12/198 (6%)
Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTF-GVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 63
           ++ R  +V +G    N  VE      F GV  I+VH   ++     R D+A+++L   V+
Sbjct: 48  SNTRTYRVAVGKN--NLEVEDEEGSLFVGVDTIHVHK--RWNALLLRNDIALIKLAEHVE 103
Query: 64  YMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKS 123
               I   CLPEK                    +      LQ    P++D+  C R    
Sbjct: 104 LSDTIQVACLPEKDSLLPKDYPCYVTGWGRLWTNGPIADKLQQGLQPVVDHATCSR---I 160
Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME-RTGRWFLIGIVSAGY--SCAQQGQ 180
           +     +   M+CAG   G   +C GDSGGPL  +   G W + GIVS G    C  + +
Sbjct: 161 DWWGFRVKKTMVCAG-GDGVISACNGDSGGPLNCQLENGSWEVFGIVSFGSRRGCNTRKK 219
Query: 181 PGIYHRVAYTVDWISYIM 198
           P +Y RV+  +DWI+  M
Sbjct: 220 PVVYTRVSAYIDWINEKM 237

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Query: 100 RPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-ME 158
           R  +LQ  +V +I N  C +++     N     EM CAG   G+ D+C+GDSGGPL+ M+
Sbjct: 462 RVFSLQWGEVKLISN--CSKFYG----NRFYEKEMECAGTYDGSIDACKGDSGGPLVCMD 515
Query: 159 RTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISY 196
                ++ G+VS G +C +   PG+Y +VA   DWISY
Sbjct: 516 ANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISY 553

>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With Benzamidine Length = 223

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 104 LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGY-RGGAKDSCQGDSGGPLM-MERTG 161
           L   +VP + +  C   +     N ++ +E +CAGY   G  D CQGDSGGP+   +   
Sbjct: 128 LLKANVPFVSDAACRSAYG----NELVANEEICAGYPDTGGVDPCQGDSGGPMFRKDNAD 183
Query: 162 RWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
            W  +GIVS GY CA+ G PG+Y  V+     I+    T
Sbjct: 184 EWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAART 222

>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen Complexed With An Activating Antibody Length = 237

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 71/174 (40%), Gaps = 20/174 (11%)
Query: 31  FGVRKINVHPYFKFTPQADRY---------DVAVLRLDRPVQYMPHIAPICLPEKGEDXX 81
           F V     HP +  +   +R+         D+ +LRL  P +    +  + LP + E   
Sbjct: 66  FQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQ-EPAL 124
Query: 82  XXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRG 141
                            L PK LQ VD+ +I N  C + H        +   M+CAG   
Sbjct: 125 GTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQK-----VTKFMLCAGRWT 179
Query: 142 GAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWI 194
           G K +C GDSGGPL+        L GI S G   CA   +P +Y +V +   WI
Sbjct: 180 GGKSTCSGDSGGPLVCNGV----LQGITSWGSEPCALPERPSLYTKVVHYRKWI 229

>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M Length = 240

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 12/190 (6%)
Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHI 68
           Q+++ LG + ++S     P  TF ++    HP +K  P  +  D+A+L+LD  V+    I
Sbjct: 49  QLRLVLGLHTLDS-----PGLTFHIKAAIQHPRYKPVPALEN-DLALLQLDGKVKPSRTI 102
Query: 69  APICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
            P+ LP K +                       + L+ +D+ ++D R C      NG   
Sbjct: 103 RPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNG--- 159
Query: 129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS-AGYSCAQQGQPGIYHRV 187
            +   M+C       +  C+GDSGGPL+  + GR  L G++S +   C    +P +   V
Sbjct: 160 SLSPSMVCLAADSKDQAPCKGDSGGPLVCGK-GR-VLAGVLSFSSRVCTDIFKPPVATAV 217
Query: 188 AYTVDWISYI 197
           A  V WI  +
Sbjct: 218 APYVSWIRKV 227

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 67/148 (45%), Gaps = 17/148 (11%)
Query: 50  RYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDV 109
           R DVA++ L  P+++   + PI L    ED                     P  LQ +++
Sbjct: 85  RNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGN-TPNALQEIEL 143
Query: 110 PIIDNRQCER--WHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG 167
            +   +QCER  W         + D  +C   + G + +C GDSGGPL+         IG
Sbjct: 144 IVHPQKQCERDQWR--------VIDSHICTLTKRG-EGACHGDSGGPLVANGA----QIG 190
Query: 168 IVSAGYSCAQQGQPGIYHRVAYTVDWIS 195
           IVS G  CA  G+P +Y RV+  V WI+
Sbjct: 191 IVSFGSPCA-LGEPDVYTRVSSFVSWIN 217

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
           P  L  VDV +I  + C + +K      ++ + M+CAG     K++C GDSGGPL+   T
Sbjct: 131 PSDLMCVDVKLISPQDCTKVYKD-----LLENSMLCAGIPDSKKNACNGDSGGPLVCRGT 185
Query: 161 GRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIM 198
               L G+VS G + C Q   PG+Y +V     WI+  M
Sbjct: 186 ----LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 10/99 (10%)
Query: 101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
           P  L  VDV +I  + C + +K      ++ + M+CAG     K++C GDSGGPL+   T
Sbjct: 131 PSDLMCVDVKLISPQDCTKVYKD-----LLENSMLCAGIPDSKKNACNGDSGGPLVCRGT 185
Query: 161 GRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIM 198
               L G+VS G + C Q   PG+Y +V     WI+  M
Sbjct: 186 ----LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTM 220

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 85/200 (42%), Gaps = 24/200 (12%)
Query: 9   QVQVTLG-DYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRY--DVAVLRL--DRP-- 61
           Q++V LG  Y +    E     TF V+K  VH  F      D Y  D+A+L+L  D P  
Sbjct: 70  QLKVVLGRTYRVKPGEE---EQTFKVKKYIVHKEF----DDDTYNNDIALLQLKSDSPQC 122
Query: 62  VQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSR-LRPKTLQAVDVPIIDNRQCERW 120
            Q    +  ICLPE                     S     + L+   V +  + +C   
Sbjct: 123 AQESDSVRAICLPEANLQLPDWTECELSGYGKHKSSSPFYSEQLKEGHVRLYPSSRCA-- 180
Query: 121 HKSNGINVVIYDEMMCAG-YRGG-----AKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS 174
                 N  + + M+CAG  R G       D+CQGDSGGPL+        L+GI+S G  
Sbjct: 181 -PKFLFNKTVTNNMLCAGDTRSGEIYPNVHDACQGDSGGPLVCMNDNHMTLLGIISWGVG 239
Query: 175 CAQQGQPGIYHRVAYTVDWI 194
           C ++  PG+Y +V   + WI
Sbjct: 240 CGEKDVPGVYTKVTNYLGWI 259

>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor Length = 240

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 104 LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW 163
           L+   + I+ N +C + H+     V + +  +CAG        C+GD GGPL+ E+    
Sbjct: 135 LRVAHLYIMGNEKCSQHHRGK---VTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMR 191
Query: 164 FLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
            ++G++  G  CA   +PGI+ RVAY   WI  I+ T
Sbjct: 192 MVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILT 228

>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With The Sema Domain Of The Met Receptor Length = 234

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 104 LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW 163
           L+   + I+ N +C + H+     V + +  +CAG        C+GD GGPL+ E+    
Sbjct: 135 LRVAHLYIMGNEKCSQHHRGK---VTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMR 191
Query: 164 FLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
            ++G++  G  CA   +PGI+ RVAY   WI  I+ T
Sbjct: 192 MVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILT 228

>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal Synthesized Substrate Length = 240

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 12/190 (6%)
Query: 9   QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHI 68
           Q+++ LG + ++S     P  TF ++    HP +K  P A   ++A+L+LD  V+    I
Sbjct: 49  QLRLVLGLHTLDS-----PGLTFHIKAAIQHPRYKPVP-ALENNLALLQLDGKVKPSRTI 102
Query: 69  APICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV 128
            P+ LP K +                       + L+ +D+ ++D R C      NG   
Sbjct: 103 RPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNG--- 159
Query: 129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS-AGYSCAQQGQPGIYHRV 187
            +   M+C       +  C+GDSGGPL+  + GR  L G++S +   C    +P +   V
Sbjct: 160 SLSPSMVCLAADSKDQAPCKGDSGGPLVCGK-GR-VLAGVLSFSSRVCTDIFKPPVATAV 217
Query: 188 AYTVDWISYI 197
           A  V WI  +
Sbjct: 218 APYVSWIRKV 227

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 76/186 (40%), Gaps = 17/186 (9%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG +  N   +        V +  +HP   +   +   D+ +LRL RP +    I 
Sbjct: 47  LQVFLGKH--NLGQQESSQEQSSVVRAVIHP--DYDAASHDQDIMLLRLARPAKLSELIQ 102
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
           P+ L     D                     P T+Q   + ++   +CE  +        
Sbjct: 103 PLPLER---DCSAQTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQ----- 154
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVA 188
           I   M+CAG     KDSCQGDSGGPL+        L G+VS G   C  + +PG+Y  V 
Sbjct: 155 ITQNMLCAGDEKYGKDSCQGDSGGPLVCGD----HLRGLVSWGNIPCGSKEKPGVYTNVC 210
Query: 189 YTVDWI 194
              +WI
Sbjct: 211 RYTNWI 216

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 78/186 (41%), Gaps = 17/186 (9%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           +QV LG + +    E     +  VR + +HP   +   +   D+ +LRL RP +    I 
Sbjct: 47  LQVFLGKHNLRQR-ESSQEQSSVVRAV-IHP--DYDAASHDQDIMLLRLARPAKLSELIQ 102
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
           P+ L     D                     P T+Q   + ++   +CE  +        
Sbjct: 103 PLPLER---DCSANTTSCHILGWGKTADGDFPDTIQCAYIHLVSREECEHAYPGQ----- 154
Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVA 188
           I   M+CAG     KDSCQGDSGGPL+        L G+VS G   C  + +PG+Y  V 
Sbjct: 155 ITQNMLCAGDEKYGKDSCQGDSGGPLVCGD----HLRGLVSWGNIPCGSKEKPGVYTNVC 210
Query: 189 YTVDWI 194
              +WI
Sbjct: 211 RYTNWI 216

>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K Length = 240

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 40  PYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRL 99
           P+ + T      D+ +++L    +   H+  + +  K                    S L
Sbjct: 80  PFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDS-L 138
Query: 100 RPK-TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME 158
           RP  TL+ V V ++  + C      NG +  I  +M+CAG   G KDSC+GD+GGPL+  
Sbjct: 139 RPSDTLREVTVTVLSRKLCNSQSYYNG-DPFITKDMVCAGDAKGQKDSCKGDAGGPLIC- 196
Query: 159 RTGRWFLIGIVSAGYSCAQQGQPGIY 184
              +     IVS G+ C    +PGIY
Sbjct: 197 ---KGVFHAIVSGGHECGVATKPGIY 219

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 66/158 (41%), Gaps = 15/158 (9%)
Query: 38  VHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXS 97
           +HP   +   +   D+ +LRL RP +    I P+ L     D                  
Sbjct: 74  IHP--DYDAASHDQDIMLLRLARPAKLSELIQPLPLER---DCSAQTTSCHILGWGKTAD 128
Query: 98  RLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM 157
              P T+Q   + ++   +CE  +        I   M+CAG     KDSCQGDSGGPL+ 
Sbjct: 129 GDFPDTIQCAYIHLVSREECEHAYPGQ-----ITQNMLCAGDEKYGKDSCQGDSGGPLVC 183
Query: 158 ERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWI 194
                  L G+VS G   C  + +PG+Y  V    +WI
Sbjct: 184 GD----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWI 217

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 47/144 (32%), Positives = 62/144 (43%), Gaps = 13/144 (9%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLR-PKTLQAVDVP 110
           D+AV+RL  PV     IA + LP    D                 S L     L+ VDVP
Sbjct: 87  DIAVIRLPVPVTLTAAIATVGLPST--DVGVGTVVTPTGWGLPSDSALGISDVLRQVDVP 144
Query: 111 IIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS 170
           I+ N  C+  +       ++ D  +C    GG K +C GDSGGPL     G  + I    
Sbjct: 145 IMSNADCDAVYG------IVTDGNICIDSTGG-KGTCNGDSGGPL--NYNGLTYGITSFG 195
Query: 171 AGYSCAQQGQPGIYHRVAYTVDWI 194
           A   C + G P  + RV Y +DWI
Sbjct: 196 AAAGC-EAGYPDAFTRVTYFLDWI 218

>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex Length = 347

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 44  FTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKT 103
           F P     D+ +++L + V     + PICLP K  D                 +    + 
Sbjct: 179 FHPDNSTVDIGLIKLKQKVPVNERVMPICLPSK--DYVNVGLVGYVSGWGRNANLNFTEH 236
Query: 104 LQAVDVPIIDNRQCERWHKSN------------GINVVIYDEMMCAGYRGGAKDSCQGDS 151
           L+ V +P+ D  +C ++++ +            G+  ++ +   CAG     +D+C GD+
Sbjct: 237 LKYVMLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDA 296
Query: 152 GGPLMM--ERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           G    +  +    W+  GI+S   SC +  + G+Y RV   +DWI
Sbjct: 297 GSAFAVHDKDDDTWYAAGILSFDKSC-RTAEYGVYVRVTSILDWI 340

>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom Length = 234

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 15/105 (14%)
Query: 98  RLRPKTLQAVDVPIIDNRQCE---RWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGP 154
            + P      ++ I+D+  C     W +       + +  +CAG   G +D+C  DSGGP
Sbjct: 131 EIYPDVPHCANINILDHAVCRTAYSWRQ-------VANTTLCAGILQGGRDTCHFDSGGP 183
Query: 155 LMMERTGRWFLIGIVS-AGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           L+          GIVS  G+ C Q G+PG+Y +V   +DWI  I+
Sbjct: 184 LICNG----IFQGIVSWGGHPCGQPGEPGVYTKVFDYLDWIKSII 224

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 44  FTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKT 103
           F P     DVA++++   V+Y  +I PI LP  GE+                 S      
Sbjct: 80  FNPDTYLNDVALIKIPH-VEYTDNIQPIRLP-SGEELNNKFENIWATVSGWGQSNTDTVI 137
Query: 104 LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW 163
           LQ     +IDN +C + +       +I +  +C     G K  C GDSGGP ++  + + 
Sbjct: 138 LQYTYNLVIDNDRCAQEYPPG----IIVESTICGDTSDG-KSPCFGDSGGPFVL--SDKN 190
Query: 164 FLIGIVS--AGYSCAQQGQPGIYHRVAYTVDWI 194
            LIG+VS  +G  C + G+P  + RV   +DWI
Sbjct: 191 LLIGVVSFVSGAGC-ESGKPVGFSRVTSYMDWI 222

>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP Length = 234

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 6/159 (3%)
Query: 40  PYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRL 99
           P  K         + +L+L+R V     +A ICLP +                    +  
Sbjct: 73  PVAKMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTG- 131
Query: 100 RPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER 159
               L    + +I N++C   H+       + +  MC         +C+GD GGPL    
Sbjct: 132 NDTVLNVALLNVISNQECNIKHRGR-----VRESEMCTEGLLAPVGACEGDYGGPLACFT 186
Query: 160 TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
              W L GI+     CA+   P ++ RV+  VDWI  +M
Sbjct: 187 HNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVM 225

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPI 111
           D+ +++LD+P+    HIAP+ LP                          P      ++ +
Sbjct: 86  DIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETF-PDVPYCANINL 144
Query: 112 IDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSA 171
           +D+  C+  +      ++     +CAG   G KD+C GDSGGPL+          GIVS 
Sbjct: 145 LDHAVCQAGYPE----LLAEYRTLCAGIVQGGKDTCGGDSGGPLICNGQ----FQGIVSY 196
Query: 172 G-YSCAQQGQPGIYHRVAYTVDWI 194
           G + C Q  +PGIY  V    DWI
Sbjct: 197 GAHPCGQGPKPGIYTNVFDYTDWI 220

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 10/144 (6%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPI 111
           D+ +++LD+P+    HIAP+ LP                          P      ++ +
Sbjct: 86  DIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETF-PDVPYCANINL 144
Query: 112 IDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSA 171
           +D+  C+  +      ++     +CAG   G KD+C GDSGGPL+          GIVS 
Sbjct: 145 LDHAVCQAGYPE----LLAEYRTLCAGIVQGGKDTCGGDSGGPLICNGQ----FQGIVSY 196
Query: 172 G-YSCAQQGQPGIYHRVAYTVDWI 194
           G + C Q  +PGIY  V    DWI
Sbjct: 197 GAHPCGQGPKPGIYTNVFDYTDWI 220

>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component A From Eisenia Fetida Length = 241

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 62/169 (36%), Gaps = 6/169 (3%)
Query: 30  TFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXX 89
           T  V    +H  +     +   D+A+L L   +    +I    LP    +          
Sbjct: 71  TANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVIS 130
Query: 90  XXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQG 149
                  +   P  LQ   +P+I   QC       G    I+D  +C     G   +C G
Sbjct: 131 GWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVG-GANIWDNHICVQDPAGNTGACNG 189
Query: 150 DSGGPLMMERTGRWFLIG----IVSAGYSCAQQGQPGIYHRVAYTVDWI 194
           DSGGPL     G   ++G    +VS+G        P +Y RV+  + WI
Sbjct: 190 DSGGPLNCPDGGT-RVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237

>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom Thrombin- Like Enzyme From Agkistrodon Halys Length = 238

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 60/157 (38%), Gaps = 16/157 (10%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPI 111
           D+ ++RLD PV+   HIA                            R+ P      DVP 
Sbjct: 88  DIMLIRLDSPVKNSKHIA-------PFSLPSSPPSVGSVCRIMGWGRISPTEGTYPDVPH 140
Query: 112 IDNRQCERWHKSNG----INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG 167
             N     +           +      +CAG   G KD+C+GDSGGPL+          G
Sbjct: 141 CVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCKGDSGGPLICNGQ----FQG 196
Query: 168 IVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMNTATN 203
           I S G   CAQ  +P  Y +V   +DWI  I+   T+
Sbjct: 197 IASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAGNTD 233

>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And P-aminobenzamidine Length = 223

Iteration: 1
 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 131 YDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAY 189
           +  M CAG     KDSC GDSGGPL+       +L G+VS G + C Q G PG+Y  +  
Sbjct: 157 HPSMFCAGGGQDQKDSCNGDSGGPLICNG----YLQGLVSFGKAPCGQVGVPGVYTNLCK 212
Query: 190 TVDWI 194
             +WI
Sbjct: 213 FTEWI 217

>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin Length = 234

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 135 MCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDW 193
           +CAG   G KD+C GDSGGPL+     +    GIVS G + C Q  +PG+Y +V     W
Sbjct: 164 LCAGILEGGKDTCGGDSGGPLICNGQFQ----GIVSFGAHPCGQGLKPGVYTKVFDYNHW 219
Query: 194 ISYIM 198
           I  I+
Sbjct: 220 IQSII 224

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 11/160 (6%)
Query: 40  PYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRL 99
           P+  + P+    D+ +L+L+R  ++   + P+ LP                      S L
Sbjct: 76  PHPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYVSMSTL 135
Query: 100 RPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER 159
              TLQ V + +  + QCER    N          +C G     +   +GDSGGPL+ + 
Sbjct: 136 -ATTLQEVLLTVQKDCQCERLFHGNYSRAT----EICVGDPKKTQTGFKGDSGGPLVCKD 190
Query: 160 TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
             +    GI+S  Y   +   PG+Y +V++ + WI   M 
Sbjct: 191 VAQ----GILS--YGNKKGTPPGVYIKVSHFLPWIKRTMK 224

>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At 1.9-Angstroms Resolution Length = 224

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 71/167 (42%), Gaps = 14/167 (8%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
           V K  +H  +   P  + +D+ +L+L++ V+  P +  + LP   +              
Sbjct: 72  VEKQIIHESYNSVP--NLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWG 129
Query: 93  XXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
                     TL+ V++ I+D + C  +          Y   +C G     + +  GDSG
Sbjct: 130 KTGVRDPTSYTLREVELRIMDEKACVDYRYYE------YKFQVCVGSPTTLRAAFMGDSG 183
Query: 153 GPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           GPL+          GIVS G+  A+   P I+ RV+  V WI+ ++N
Sbjct: 184 GPLLCAGVAH----GIVSYGHPDAK--PPAIFTRVSTYVPWINAVIN 224

>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G Length = 227

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 76/195 (38%), Gaps = 18/195 (9%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
            R + VTLG + I +  E        V K   HP   + P     D+ +L+L R  +   
Sbjct: 48  GRSMTVTLGAHNIKAKEET--QQIIPVAKAIPHP--DYNPDDRSNDIMLLKLVRNAKRTR 103
Query: 67  HIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
            + P+ LP +                        PKTL  V + +  ++ CE   +S+  
Sbjct: 104 AVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSS-- 161
Query: 127 NVVIYDEM--MCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
               Y+    +C G       S +GDSGGPL+ +R       GIVS G +      P ++
Sbjct: 162 ----YNRANEICVGDSKIKGASFRGDSGGPLVCKRAA----AGIVSYGQT--DGSAPQVF 211
Query: 185 HRVAYTVDWISYIMN 199
            RV   V WI   M 
Sbjct: 212 TRVLSFVSWIKKTMK 226

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 11/160 (6%)
Query: 40  PYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRL 99
           P+  + P+    ++ +L+L+R  ++   + P+ LP                      S L
Sbjct: 76  PHPAYNPKNFSNNIMLLQLERKAKWTTAVRPLRLPSSKAQVKPGQLCSVAGWGYVSMSTL 135
Query: 100 RPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER 159
              TLQ V + +  + QCER    N          +C G     +   +GDSGGPL+ + 
Sbjct: 136 -ATTLQEVLLTVQKDCQCERLFHGNYSRAT----EICVGDPKKTQTGFKGDSGGPLVCKD 190
Query: 160 TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
             +    GI+S  Y   +   PG+Y +V++ + WI   M 
Sbjct: 191 VAQ----GILS--YGNKKGTPPGVYIKVSHFLPWIKRTMK 224

>pdb|1DLE|A Chain A, Factor B Serine Protease Domain Length = 298

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 24/151 (15%)
Query: 46  PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQ 105
           P+   YDVA+++L   ++Y   I PICLP                        L  + ++
Sbjct: 104 PEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIK 163
Query: 106 AVDVPIIDNR---------------QCER-------WHKSNGINVVIYDEMMCAGYRGGA 143
           A+ V   + +                CER       + K   I+ V+    +C G     
Sbjct: 164 ALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPY 223
Query: 144 KD--SCQGDSGGPLMMERTGRWFLIGIVSAG 172
            D  +C+GDSGGPL++ +  R+  +G++S G
Sbjct: 224 ADPNTCRGDSGGPLIVHKRSRFIQVGVISWG 254

>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B Length = 497

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 24/151 (15%)
Query: 46  PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQ 105
           P+   YDVA+++L   ++Y   I PICLP                        L  + ++
Sbjct: 303 PEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIK 362
Query: 106 AVDVPIIDNR---------------QCER-------WHKSNGINVVIYDEMMCAGYRGGA 143
           A+ V   + +                CER       + K   I+ V+    +C G     
Sbjct: 363 ALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPY 422
Query: 144 KD--SCQGDSGGPLMMERTGRWFLIGIVSAG 172
            D  +C+GDSGGPL++ +  R+  +G++S G
Sbjct: 423 ADPNTCRGDSGGPLIVHKRSRFIQVGVISWG 453

>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin Length = 507

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 24/151 (15%)
Query: 46  PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQ 105
           P+   YDVA+++L   ++Y   I PICLP                        L  + ++
Sbjct: 311 PEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIK 370
Query: 106 AVDVPIIDNR---------------QCER-------WHKSNGINVVIYDEMMCAGYRGGA 143
           A+ V   + +                CER       + K   I+ V+    +C G     
Sbjct: 371 ALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPY 430
Query: 144 KD--SCQGDSGGPLMMERTGRWFLIGIVSAG 172
            D  +C+GDSGGPL++ +  R+  +G++S G
Sbjct: 431 ADPNTCRGDSGGPLIVHKRSRFIQVGVISWG 461

>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B Length = 741

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 24/151 (15%)
Query: 46  PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQ 105
           P+   YDVA+++L   ++Y   I PICLP                        L  + ++
Sbjct: 545 PEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIK 604
Query: 106 AVDVPIIDNR---------------QCER-------WHKSNGINVVIYDEMMCAGYRGGA 143
           A+ V   + +                CER       + K   I+ V+    +C G     
Sbjct: 605 ALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPY 664
Query: 144 KD--SCQGDSGGPLMMERTGRWFLIGIVSAG 172
            D  +C+GDSGGPL++ +  R+  +G++S G
Sbjct: 665 ADPNTCRGDSGGPLIVHKRSRFIQVGVISWG 695

>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With Factors B And D Length = 732

Iteration: 1
 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 24/151 (15%)
Query: 46  PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQ 105
           P+   YDVA+++L   ++Y   I PICLP                        L  + ++
Sbjct: 536 PEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIK 595
Query: 106 AVDVPIIDNR---------------QCER-------WHKSNGINVVIYDEMMCAGYRGGA 143
           A+ V   + +                CER       + K   I+ V+    +C G     
Sbjct: 596 ALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPY 655
Query: 144 KD--SCQGDSGGPLMMERTGRWFLIGIVSAG 172
            D  +C+GDSGGPL++ +  R+  +G++S G
Sbjct: 656 ADPNTCRGDSGGPLIVHKRSRFIQVGVISWG 686

>pdb|2OK5|A Chain A, Human Complement Factor B Length = 752

Iteration: 1
 Score = 47.0 bits (110), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 24/151 (15%)
Query: 46  PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQ 105
           P+   YDVA+++L   ++Y   I PICLP                        L  + ++
Sbjct: 555 PEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIK 614
Query: 106 AVDVPIIDNR---------------QCER-------WHKSNGINVVIYDEMMCAGYRGGA 143
           A+ V   + +                CER       + K   I+ V+    +C G     
Sbjct: 615 ALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPY 674
Query: 144 KD--SCQGDSGGPLMMERTGRWFLIGIVSAG 172
            D  +C+GDSGGPL++ +  R+  +G++S G
Sbjct: 675 ADPNTCRGDSGGPLIVHKRSRFIQVGVISWG 705

>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd] Length = 228

Iteration: 1
 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 81/196 (41%), Gaps = 14/196 (7%)
Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           S  ++QVTLG + I    +        V KI  HP +     ++  D+ +L+L    +  
Sbjct: 47  SGSKIQVTLGAHNIKE--QEKMQQIIPVVKIIPHPAYNSKTISN--DIMLLKLKSKAKRS 102
Query: 66  PHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNG 125
             + P+ LP +                          TLQ V++ + ++++CE + K   
Sbjct: 103 SAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLK--- 159
Query: 126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
            N       +CAG     + S +GDSGGPL+ ++       GIVS G +      P  + 
Sbjct: 160 -NYFDKANEICAGDPKIKRASFRGDSGGPLVCKKVA----AGIVSYGQN--DGSTPRAFT 212
Query: 186 RVAYTVDWISYIMNTA 201
           +V+  + WI   M  +
Sbjct: 213 KVSTFLSWIKKTMKKS 228

>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B Length = 227

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 18/192 (9%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           + VTLG + I    EP   +    R I   P+  + P+    D+ +L+L+R  +    + 
Sbjct: 50  INVTLGAHNIKEQ-EPTQQFIPVKRPI---PHPAYNPKNFSNDIMLLQLERKAKRTRAVQ 105
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
           P+ LP                            TLQ V + + ++R+CE   +       
Sbjct: 106 PLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRH------ 159
Query: 130 IYDEM--MCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
            YD    +C G     K S +GDSGGPL+  +  +    GIVS G +      P    +V
Sbjct: 160 YYDSTIELCVGDPEIKKTSFKGDSGGPLVCNKVAQ----GIVSYGRNNGM--PPRACTKV 213
Query: 188 AYTVDWISYIMN 199
           +  V WI   M 
Sbjct: 214 SSFVHWIKKTMK 225

>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho Length = 227

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 76/192 (39%), Gaps = 18/192 (9%)
Query: 10  VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIA 69
           + VTLG + I    EP   +    R I   P+  + P+    D+ +L+L+R  +    + 
Sbjct: 50  INVTLGAHNIKEQ-EPTQQFIPVKRPI---PHPAYNPKNFSNDIMLLQLERKAKRTRAVQ 105
Query: 70  PICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
           P+ LP                            TLQ V + + ++R+CE   +       
Sbjct: 106 PLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRH------ 159
Query: 130 IYDEM--MCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
            YD    +C G     K S +GDSGGPL+  +  +    GIVS G +      P    +V
Sbjct: 160 YYDSTIELCVGDPEIKKTSFKGDSGGPLVCNKVAQ----GIVSYGRNNGM--PPRACTKV 213
Query: 188 AYTVDWISYIMN 199
           +  V WI   M 
Sbjct: 214 SSFVHWIKKTMK 225

>pdb|3FZZ|A Chain A, Structure Of Grc Length = 227

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 75/195 (38%), Gaps = 18/195 (9%)
Query: 7   ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP 66
            R + VTLG + I +  E        V K   HP   + P     D+ +L+L R  +   
Sbjct: 48  GRSMTVTLGAHNIKAKEET--QQIIPVAKAIPHP--DYNPDDRSNDIMLLKLVRNAKRTR 103
Query: 67  HIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
            + P+ LP +                        PKTL  V + +  ++ CE   +S+  
Sbjct: 104 AVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSS-- 161
Query: 127 NVVIYDEM--MCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
               Y+    +C G       S + DSGGPL+ +R       GIVS G +      P ++
Sbjct: 162 ----YNRANEICVGDSKIKGASFEEDSGGPLVCKRAA----AGIVSYGQT--DGSAPQVF 211
Query: 185 HRVAYTVDWISYIMN 199
            RV   V WI   M 
Sbjct: 212 TRVLSFVSWIKKTMK 226

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 13/166 (7%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXX 92
           VR+   HP +     A+  D+ +L+L R       ++PI LP    +             
Sbjct: 71  VRRPIPHPDYNDETLAN--DIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWG 128
Query: 93  XXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
               +      LQ VD+ +    +C    K    N + + ++ CAG     K+S  GDSG
Sbjct: 129 RLGVNMPSTDKLQEVDLEVQSEEKCIARFK----NYIPFTQI-CAGDPSKRKNSFSGDSG 183
Query: 153 GPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           GPL+     +    GIVS G +      P +Y R++  + WI   M
Sbjct: 184 GPLVCNGVAQ----GIVSYGRN--DGTTPDVYTRISSFLSWIHSTM 223

>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone Length = 226

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 16/193 (8%)
Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           + R + VTLG + I    E        V K   HP  K+      +D+ +L+L       
Sbjct: 47  AGRSITVTLGAHNITE--EEDTWQKLEVIKQFRHP--KYNTSTLHHDIMLLKLKEKASLT 102
Query: 66  PHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNG 125
             +  +  P +                     +    TLQ V + ++D + C  +   + 
Sbjct: 103 LAVGTLPFPSQKNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFD- 161
Query: 126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
                ++  +C G     K + +GDSGGPL+     +    GIVS G S A+   P ++ 
Sbjct: 162 -----HNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQ----GIVSYGRSDAK--PPAVFT 210
Query: 186 RVAYTVDWISYIM 198
           R+++   WI+ I+
Sbjct: 211 RISHYQPWINQIL 223

>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small Molecule Inhibitor Length = 226

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 16/193 (8%)
Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           + R + VTLG + I    E        V K   HP  K+      +D+ +L+L       
Sbjct: 47  AGRSITVTLGAHNITE--EEDTWQKLEVIKQFRHP--KYNTSTLHHDIMLLKLKEKASLT 102
Query: 66  PHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNG 125
             +  +  P +                     +    TLQ V + ++D + C  +   + 
Sbjct: 103 LAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFD- 161
Query: 126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
                ++  +C G     K + +GDSGGPL+     +    GIVS G S A+   P ++ 
Sbjct: 162 -----HNLQLCVGNPRKTKSAFKGDSGGPLLCAGAAQ----GIVSYGRSDAK--PPAVFT 210
Query: 186 RVAYTVDWISYIM 198
           R+++   WI+ I+
Sbjct: 211 RISHYQPWINQIL 223

>pdb|2ODP|A Chain A, Complement Component C2a, The Catalytic Fragment Of C3- And C5- Convertase Of Human Complement Length = 509

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 21/141 (14%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPI 111
           D+A+L+L + V+   H  PICLP   E                    L  +++ A  V +
Sbjct: 318 DIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVAL 377
Query: 112 ------IDNRQCERWHKS--------------NGINVVIYDEMMCAGYRGGAKDSCQGDS 151
                 I+ +    W                   +  V+ D+ +C+G +   +  C+G+S
Sbjct: 378 NGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQED-ESPCKGES 436
Query: 152 GGPLMMERTGRWFLIGIVSAG 172
           GG + +ER  R+F +G+VS G
Sbjct: 437 GGAVFLERRFRFFQVGLVSWG 457

>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9 Angstroms Resolution Length = 226

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 16/193 (8%)
Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           + R + VTLG + I    E        V K   HP  K+      +D+ +L+L       
Sbjct: 47  AGRSITVTLGAHNITE--EEDTWQKLEVIKQFRHP--KYNTSTLHHDIMLLKLKEKASLT 102
Query: 66  PHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNG 125
             +  +  P +                     +    TLQ V + ++D + C  +   + 
Sbjct: 103 LAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFD- 161
Query: 126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
                ++  +C G     K + +GDSGGPL+     +    GIVS G S A+   P ++ 
Sbjct: 162 -----HNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----GIVSYGRSDAK--PPAVFT 210
Query: 186 RVAYTVDWISYIM 198
           R+++   WI+ I+
Sbjct: 211 RISHYRPWINQIL 223

>pdb|2I6Q|A Chain A, Complement Component C2a Length = 517

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/141 (24%), Positives = 59/141 (41%), Gaps = 21/141 (14%)
Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPI 111
           D+A+L+L + V+   H  PICLP   E                    L  +++ A  V +
Sbjct: 326 DIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVAL 385
Query: 112 ------IDNRQCERWHKS--------------NGINVVIYDEMMCAGYRGGAKDSCQGDS 151
                 I+ +    W                   +  V+ D+ +C+G +   +  C+G+S
Sbjct: 386 NGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQED-ESPCKGES 444
Query: 152 GGPLMMERTGRWFLIGIVSAG 172
           GG + +ER  R+F +G+VS G
Sbjct: 445 GGAVFLERRFRFFQVGLVSWG 465

>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 150

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 35  KINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK 76
           KI +HP + +    DR D+A+L+L RP++   +I P+CLP+K
Sbjct: 83  KIYIHPRYNWKENLDR-DIALLKLKRPIELSDYIHPVCLPDK 123

>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex Length = 226

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 16/193 (8%)
Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           + R + VTLG + I    E        V K   HP  K+      +D+ +L+L       
Sbjct: 47  AGRSITVTLGAHNITE--EEDTWQKLEVIKQFRHP--KYNTSTLHHDIMLLKLKEKASLT 102
Query: 66  PHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNG 125
             +  +  P +                     +    TLQ V + ++D + C  +   + 
Sbjct: 103 LAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFD- 161
Query: 126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
                ++  +C G     K + +GDSGGPL+     +    GIVS G S A+   P ++ 
Sbjct: 162 -----HNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----GIVSYGRSDAK--PPAVFT 210
Query: 186 RVAYTVDWISYIM 198
           R+++   WI+ I+
Sbjct: 211 RISHYRPWINQIL 223

>pdb|1NN6|A Chain A, Human Pro-Chymase Length = 228

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 77/193 (39%), Gaps = 16/193 (8%)
Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           + R + VTLG + I    E        V K   HP  K+      +D+ +L+L       
Sbjct: 49  AGRSITVTLGAHNITE--EEDTWQKLEVIKQFRHP--KYNTSTLHHDIMLLKLKEKASLT 104
Query: 66  PHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVPIIDNRQCERWHKSNG 125
             +  +  P +                     +    TLQ V + ++D + C  +   + 
Sbjct: 105 LAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFRDFD- 163
Query: 126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
                ++  +C G     K + +GDSGGPL+     +    GIVS G S A+   P ++ 
Sbjct: 164 -----HNLQLCVGNPRKTKSAFKGDSGGPLLCAGVAQ----GIVSYGRSDAK--PPAVFT 212
Query: 186 RVAYTVDWISYIM 198
           R+++   WI+ I+
Sbjct: 213 RISHYRPWINQIL 225

>pdb|2HNT|E Chain E, Crystallographic Structure Of Human Gamma-Thrombin Length = 81

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 33 VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK 76
          + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++
Sbjct: 8  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDR 50

>pdb|1BHX|B Chain B, X-Ray Structure Of The Complex Of Human Alpha Thrombin With The Inhibitor Sdz 229-357 Length = 147

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK 76
           + KI +HP + +    DR D+A+++L +PV +  +I P+CLP++
Sbjct: 81  LEKIYIHPRYNWRENLDR-DIALMKLKKPVAFSDYIHPVCLPDR 123

>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal Plasma Length = 237

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 11/145 (7%)
Query: 51  YDVAVLRLDRPVQYMPHIAPICLPEKGEDXXXXXXXXXXXXXXXXXSRLRPKTLQAVDVP 110
           +D+ +LRL +P +    +  + LP +                    +R    TLQ V++ 
Sbjct: 95  HDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNR-GSGTLQCVELR 153
Query: 111 IIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS 170
           +  N +C R +       V     +CA +R  +   C GDSGG L+ +   +    GI S
Sbjct: 154 LQSNEKCARAYPEKMTEFV-----LCATHRDDSGSICLGDSGGALICDGVFQ----GITS 204
Query: 171 AGYS-CAQQGQPGIYHRVAYTVDWI 194
            GYS CA      ++ +V     WI
Sbjct: 205 WGYSECADFNDNFVFTKVMPHKKWI 229

>pdb|1KYN|B Chain B, Cathepsin-G Length = 235

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 103 TLQAVDVPIIDNRQCERWHKSNGINVVIYD--EMMCAGYRGGAKDSCQGDSGGPLMMERT 160
           TL+ V + +  +RQC R   S       YD    +C G R   K + +GDSGGPL+    
Sbjct: 138 TLREVQLRVQRDRQCLRIFGS-------YDPRRQICVGDRRERKAAFKGDSGGPLLCNNV 190
Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
                 GIVS G S      P ++ RV+  + WI   M +
Sbjct: 191 AH----GIVSYGKSSGV--PPEVFTRVSSFLPWIRTTMRS 224

>pdb|1AU8|A Chain A, Human Cathepsin G Length = 224

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 15/100 (15%)
Query: 103 TLQAVDVPIIDNRQCERWHKSNGINVVIYD--EMMCAGYRGGAKDSCQGDSGGPLMMERT 160
           TL+ V + +  +RQC R   S       YD    +C G R   K + +GDSGGPL+    
Sbjct: 138 TLREVQLRVQRDRQCLRIFGS-------YDPRRQICVGDRRERKAAFKGDSGGPLLCNNV 190
Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
                 GIVS G S      P ++ RV+  + WI   M +
Sbjct: 191 AH----GIVSYGKSSGV--PPEVFTRVSSFLPWIRTTMRS 224

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	203
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	7e-80
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	8e-78
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	2e-75
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	7e-73
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	8e-73
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	1e-72
1md8_A	329	C1R complement serine protease; innate immunity, a	3e-72
1gpz_A	399	Complement C1R component; hydrolase, activation, i	1e-71
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	6e-71
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	3e-70
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	8e-70
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	8e-69
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	2e-68
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	2e-68
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	3e-68
1aut_C	250	Activated protein C; serine proteinase, plasma cal	7e-68
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	9e-68
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	1e-67
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	1e-67
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	1e-67
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	1e-67
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	3e-67
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	3e-67
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	4e-67
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	5e-67
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	5e-67
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	7e-67
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	9e-67
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	1e-66
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	2e-66
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	2e-66
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	2e-66
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	4e-66
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	8e-66
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	1e-65
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	3e-65
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	5e-65
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	1e-64
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	2e-64
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	4e-64
1elv_A	333	Complement C1S component; trypsin-like serin prote	5e-64
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	6e-64
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	1e-63
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	1e-63
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	7e-63
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	1e-62
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	2e-62
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	2e-62
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	9e-62
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	3e-61
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	2e-60
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	3e-60
2xrc_A	565	Human complement factor I; immune system, hydrolas	1e-59
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	1e-59
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	2e-59
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	6e-59
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	1e-58
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	2e-58
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-58
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	4e-58
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	7e-58
2aiq_A	231	Protein C activator; snake venom serine proteinase	1e-57
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	2e-57
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	4e-57
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	7e-57
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	2e-56
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	4e-56
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	1e-55
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	2e-55
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	3e-55
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	4e-55
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	4e-55
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	5e-55
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	6e-55
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	6e-55
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	7e-55
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	7e-55
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	8e-55
1a7s_A	225	Heparin binding protein; serine protease homolog,	2e-54
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	3e-54
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	9e-54
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	1e-53
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	4e-53
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	8e-53
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	2e-52
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	3e-52
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	4e-52
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	3e-51
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	1e-50
3hrz_D	741	Complement factor B; serine protease, glycosilated	3e-50
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	8e-42
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	3e-16
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	7e-10
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	2e-05

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score =  242 bits (619), Expect = 7e-80
 Identities = 62/203 (30%), Positives = 103/203 (50%), Gaps = 9/203 (4%)

Query: 4   TASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 63
            ++   +++  G++   +  E LP     +R++ +H    F P+    DVA+L LDRP+ 
Sbjct: 185 QSNLDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHS--NFNPKTVVNDVALLLLDRPLV 242

Query: 64  YMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLR-PKTLQAVDVPIIDNRQCERWHK 122
              +I  ICLP++ + F     +A+GWG  + GSR R    L+ + +P +D  +C+   +
Sbjct: 243 QADNIGTICLPQQSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLR 302

Query: 123 SN--GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT---GRWFLIGIVSAGYSCAQ 177
           +   G+  V+    +CAG   G KD+C GD G PL         R+  +GIV+ G  C  
Sbjct: 303 NTRLGLKFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGD 361

Query: 178 QGQPGIYHRVAYTVDWISYIMNT 200
           +  PG+Y  VA+  +WI   M  
Sbjct: 362 ENVPGVYANVAHFRNWIDQEMQA 384

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score =  233 bits (596), Expect = 8e-78
 Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 16/209 (7%)

Query: 1   MTNTASARQVQVTLGDYVINSAVE---------PLPAYTFGVRKINVHPYFKFTPQADRY 51
                     +V LG++   +  +         P      G+ +   HP +    +   +
Sbjct: 73  RVLRVVGALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYH 132

Query: 52  DVAVLRLDRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVP 110
           D+A++RL+R V++  +I P+CLP+  E+   GQ     GWG  + G        Q + VP
Sbjct: 133 DIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGWGRTETGQ--YSTIKQKLAVP 190

Query: 111 IIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-TGRWFLIGIV 169
           ++   QC +   + G+   +    +CAG     KDSC GDSGGPL+ ER   ++FL G+V
Sbjct: 191 VVHAEQCAKTFGAAGVR--VRSSQLCAGGEKA-KDSCGGDSGGPLLAERANQQFFLEGLV 247

Query: 170 SAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           S G +C  +G PGIY +V    DWI   +
Sbjct: 248 SFGATCGTEGWPGIYTKVGKYRDWIEGNI 276

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score =  225 bits (577), Expect = 2e-75
 Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 12/201 (5%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLDRP 61
              S   + V LG   +    E +      +R+++VHP Y +        D+A+L L+  
Sbjct: 47  EAQSNASLDVFLGHTNVE---ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENS 103

Query: 62  VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
           V   P++ PICLP+    +  G  G+ +G+G ++         L+ V +P+ + + CE W
Sbjct: 104 VTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKI---AHDLRFVRLPVANPQACENW 160

Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQ 178
            +      V    M CAG+    +D+CQGDSGG   +    T RW   GIVS G  C++ 
Sbjct: 161 LRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR- 219

Query: 179 GQPGIYHRVAYTVDWISYIMN 199
              G Y +V   VDWI   M 
Sbjct: 220 -GYGFYTKVLNYVDWIKKEME 239

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score =  219 bits (560), Expect = 7e-73
 Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 12/197 (6%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           +   V + +G++  ++A       T  V  I V+    + P     DV+V++    + + 
Sbjct: 49  APALVSLVVGEHDSSAASTV--RQTHDVDSIFVNE--NYDPATLENDVSVIKTAVAITFD 104

Query: 66  PHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNG 125
            ++ PIC P+   D++ +    +GWG + +G    P  L+ V + I  N  C+  + S+ 
Sbjct: 105 INVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSD- 163

Query: 126 INVVIYDEMMCAGYRGGA--KDSCQGDSGGPLMM-ERTGRWFLIGIVSAGYSCAQQGQPG 182
               IYD+M+CA    G   +DSCQGDSGGPL + + +G + L+GIVS G  CA  G PG
Sbjct: 164 ---TIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGYPG 219

Query: 183 IYHRVAYTVDWISYIMN 199
           +Y RV +   WI+  + 
Sbjct: 220 VYSRVGFHAGWITDTIT 236

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score =  218 bits (559), Expect = 8e-73
 Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 9/198 (4%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
                 +    LG ++ ++   P       + +I ++P   +  +    D+A++ L+  V
Sbjct: 46  RNLEPSKWTAILGLHMKSNLTSP-QTVPRLIDEIVINP--HYNRRRKDNDIAMMHLEFKV 102

Query: 63  QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
            Y  +I PI LPE+ + F  G+    AGWG +          LQ  DVP++ N +C++  
Sbjct: 103 NYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTT-ADILQEADVPLLSNERCQQQM 161

Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
               I     + M+CAGY  G  DSCQGDSGGPLM +   RWFL G+ S GY CA   +P
Sbjct: 162 PEYNIT----ENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRP 217

Query: 182 GIYHRVAYTVDWISYIMN 199
           G+Y RV+   +WI   ++
Sbjct: 218 GVYARVSRFTEWIQSFLH 235

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score =  219 bits (560), Expect = 1e-72
 Identities = 63/204 (30%), Positives = 101/204 (49%), Gaps = 9/204 (4%)

Query: 1   MTNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDR 60
                + R +   LG++ + S  +     +  V ++ +     + P    +D+A+LRL +
Sbjct: 43  FDKIKNWRNLIAVLGEHDL-SEHDG-DEQSRRVAQVIIPS--TYVPGTTNHDIALLRLHQ 98

Query: 61  PVQYMPHIAPICLPEKGEDFL----GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQ 116
           PV    H+ P+CLPE+          +F   +GWG L          L  ++VP +  + 
Sbjct: 99  PVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGAT-ALELMVLNVPRLMTQD 157

Query: 117 CERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA 176
           C +  +  G +  I + M CAGY  G+KDSC+GDSGGP      G W+L GIVS G  CA
Sbjct: 158 CLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCA 217

Query: 177 QQGQPGIYHRVAYTVDWISYIMNT 200
             G  G+Y RV+  ++W+  +M +
Sbjct: 218 TVGHFGVYTRVSQYIEWLQKLMRS 241

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score =  221 bits (564), Expect = 3e-72
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 12/200 (6%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLDRP 61
              S   + V LG   +    E +      +R+++VHP Y +        D+A+L L+  
Sbjct: 136 EAQSNASLDVFLGHTNVE---ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENS 192

Query: 62  VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
           V   P++ PICLP+    +  G  G+ +G+G ++         L+ V +P+ + + CE W
Sbjct: 193 VTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKI---AHDLRFVRLPVANPQACENW 249

Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQ 178
            +      V    M CAG+    +D+CQGDSGG   +    T RW   GIVS G  C++ 
Sbjct: 250 LRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR- 308

Query: 179 GQPGIYHRVAYTVDWISYIM 198
              G Y +V   VDWI   M
Sbjct: 309 -GYGFYTKVLNYVDWIKKEM 327

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score =  221 bits (565), Expect = 1e-71
 Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 12/201 (5%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLDRP 61
              S   + V LG   +    E +      +R+++VHP Y +        D+A+L L+  
Sbjct: 204 EAQSNASLDVFLGHTNVE---ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENS 260

Query: 62  VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
           V   P++ PICLP+    +  G  G+ +G+G ++         L+ V +P+ + + CE W
Sbjct: 261 VTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKI---AHDLRFVRLPVANPQACENW 317

Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQ 178
            +      V    M CAG+    +D+CQGDSGG   +    T RW   GIVS G  C++ 
Sbjct: 318 LRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR- 376

Query: 179 GQPGIYHRVAYTVDWISYIMN 199
              G Y +V   VDWI   M 
Sbjct: 377 -GYGFYTKVLNYVDWIKKEME 396

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score =  214 bits (547), Expect = 6e-71
 Identities = 68/193 (35%), Positives = 96/193 (49%), Gaps = 10/193 (5%)

Query: 2   TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
            +  +   +Q+  G+  ++            V KI +H    F       D+++L+L   
Sbjct: 50  DDYENPSGLQIVAGELDMSVNEGSEQ--IITVSKIILHE--NFDYNLLDNDISLLKLSGS 105

Query: 62  VQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
           + +  ++API LPE+G           GWG    G    P  LQ V VP++ +  C   +
Sbjct: 106 LTFNDNVAPIALPEQGHTA-TGDVIVTGWGTTSEGGNT-PDVLQKVTVPLVSDEDCRADY 163

Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
            ++ I     D M+CAG   G KDSCQGDSGGPL    TG  +L GIVS GY CA+ G P
Sbjct: 164 GADEI----LDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYP 219

Query: 182 GIYHRVAYTVDWI 194
           G+Y  V+Y VDWI
Sbjct: 220 GVYTEVSYHVDWI 232

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score =  212 bits (543), Expect = 3e-70
 Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 11/196 (5%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           +  ++ V  G++ I    E        V +I  H  F        +D+A+L LD P+   
Sbjct: 45  TGVKITVVAGEHNIEE-TEH-TEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLN 102

Query: 66  PHIAPICLPEKGEDFL---GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHK 122
            ++ PIC+ +K    +      G+ +GWG +    R     LQ + VP++D   C R  K
Sbjct: 103 SYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRS-ALVLQYLRVPLVDRATCLRSTK 161

Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPG 182
                  I + M CAG+  G +DSCQGDSGGP + E  G  FL GI+S G  CA +G+ G
Sbjct: 162 FT-----ITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYG 216

Query: 183 IYHRVAYTVDWISYIM 198
           IY +V+  V+WI    
Sbjct: 217 IYTKVSRYVNWIKEKT 232

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score =  211 bits (540), Expect = 8e-70
 Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 10/200 (5%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
                   ++  G   ++   +  P     +++I +H    +      +D+A+++L  P+
Sbjct: 48  GLPLQDVWRIYSGILELSDITKDTP--FSQIKEIIIHQ--NYKVSEGNHDIALIKLQAPL 103

Query: 63  QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
           +Y     PI LP KG+        W  GWG  +    +    LQ V++P++ N +C++ +
Sbjct: 104 EYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEI-QNILQKVNIPLVTNEECQKRY 162

Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
           +       I   M+CAGY+ G KD+C+GDSGGPL+ +  G W L+GI S G  CA++ QP
Sbjct: 163 QDY----KITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQP 218

Query: 182 GIYHRVAYTVDWISYIMNTA 201
           G+Y +VA  +DWI     ++
Sbjct: 219 GVYTKVAEYMDWILEKTQSS 238

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score =  209 bits (534), Expect = 8e-69
 Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 14/200 (7%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
            A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ + 
Sbjct: 46  QAKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFR 101

Query: 66  PHIAPICLPEKG----EDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
            ++AP CLPE+          + G  +G+G            L+ ++VP +D   C+   
Sbjct: 102 MNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQ-STRLKMLEVPYVDRNSCKLSS 160

Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
                   I   M CAGY    +D+CQGDSGGP +      +F+ GIVS G  CA++G+ 
Sbjct: 161 SFI-----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKY 215

Query: 182 GIYHRVAYTVDWISYIMNTA 201
           GIY +V   + WI   M T 
Sbjct: 216 GIYTKVTAFLKWIDRSMKTR 235

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score =  208 bits (531), Expect = 2e-68
 Identities = 67/197 (34%), Positives = 92/197 (46%), Gaps = 11/197 (5%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           +   Q    LG +  +    P       +++I  HP   F      YD+A+L L++P +Y
Sbjct: 53  SDPTQWTAFLGLHDQSQRSAP-GVQERRLKRIISHP--FFNDFTFDYDIALLELEKPAEY 109

Query: 65  MPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKS 123
              + PI LP+    F  G+  W  GWG  Q G       LQ  ++ +I+   CE     
Sbjct: 110 SSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTG-ALILQKGEIRVINQTTCENLLPQ 168

Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGRWFLIGIVSAGYSCAQQGQPG 182
                 I   MMC G+  G  DSCQGDSGGPL  +E  GR F  G+VS G  CAQ+ +PG
Sbjct: 169 Q-----ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPG 223

Query: 183 IYHRVAYTVDWISYIMN 199
           +Y R+    DWI     
Sbjct: 224 VYTRLPLFRDWIKENTG 240

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score =  207 bits (530), Expect = 2e-68
 Identities = 68/197 (34%), Positives = 103/197 (52%), Gaps = 10/197 (5%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
              S + ++V  G    +   E      FGV++I +H   ++      YD+A+L+L+  V
Sbjct: 48  GVESPKILRVYSGILNQSEIKEDTS--FFGVQEIIIHD--QYKMAESGYDIALLKLETTV 103

Query: 63  QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
            Y     PI LP KGE  +     W  GWG  +   ++   TLQ   +P++ N +C++ +
Sbjct: 104 NYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKI-QNTLQKAKIPLVTNEECQKRY 162

Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
           + +     I  +M+CAGYR G KD+C+GDSGGPL  +    W L+GI S G  CAQ+ +P
Sbjct: 163 RGH----KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERP 218

Query: 182 GIYHRVAYTVDWISYIM 198
           G+Y  V   VDWI    
Sbjct: 219 GVYTNVVEYVDWILEKT 235

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score =  207 bits (530), Expect = 3e-68
 Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 14/204 (6%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
               A  + + +G     S              + +H  +      D  D+A+++L+  V
Sbjct: 44  QKHDASALDIRMGTLKRLSPHYT----QAWSEAVFIHEGYTHDAGFD-NDIALIKLNNKV 98

Query: 63  QYMPHIAPICLPEKGEDFL---GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCER 119
               +I PICLP K  +        G A+GWG  Q G     + L  VD+PI+D+++C  
Sbjct: 99  VINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFL--ARNLMYVDIPIVDHQKCTA 156

Query: 120 W-HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM--ERTGRWFLIGIVSAG-YSC 175
              K       +   M+CAG   G KDSC+GDSGG L+     T RWF+ GIVS G  +C
Sbjct: 157 AYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNC 216

Query: 176 AQQGQPGIYHRVAYTVDWISYIMN 199
            + GQ G+Y +V   + WI  I++
Sbjct: 217 GEAGQYGVYTKVINYIPWIENIIS 240

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score =  207 bits (528), Expect = 7e-68
 Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 18/205 (8%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
            ++++ V LG+Y +    +        ++++ VHP   ++      D+A+L L +P    
Sbjct: 46  ESKKLLVRLGEYDLRRWEKW--ELDLDIKEVFVHP--NYSKSTTDNDIALLHLAQPATLS 101

Query: 66  PHIAPICLPEKGEDFL-----GQFGWAAGWGALQAG----SRLRPKTLQAVDVPIIDNRQ 116
             I PICLP+ G         GQ     GWG   +      R R   L  + +P++ + +
Sbjct: 102 QTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNE 161

Query: 117 CERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA 176
           C     +      + + M+CAG  G  +D+C+GDSGGP++    G WFL+G+VS G  C 
Sbjct: 162 CSEVMSNM-----VSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCG 216

Query: 177 QQGQPGIYHRVAYTVDWISYIMNTA 201
                G+Y +V+  +DWI   +   
Sbjct: 217 LLHNYGVYTKVSRYLDWIHGHIRDK 241

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score =  206 bits (526), Expect = 9e-68
 Identities = 62/199 (31%), Positives = 93/199 (46%), Gaps = 14/199 (7%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
              +  +   + G  +  S ++       G+R+I VH   K+   +  YD+++  L  PV
Sbjct: 45  TYKNPARWTASFGVTIKPSKMK------RGLRRIIVHE--KYKHPSHDYDISLAELSSPV 96

Query: 63  QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
            Y   +  +CLP+   +F  G   +  G+GAL+         L+   V +ID   C    
Sbjct: 97  PYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYS-QNHLRQAQVTLIDATTCNEPQ 155

Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGRWFLIGIVSAGYSCAQQGQ 180
             N     I   M+CAG   G  D+CQGDSGGPL+  +    W+L GIVS G  CA+  +
Sbjct: 156 AYNDA---ITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNK 212

Query: 181 PGIYHRVAYTVDWISYIMN 199
           PG+Y RV    DWI+    
Sbjct: 213 PGVYTRVTALRDWITSKTG 231

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score =  207 bits (528), Expect = 1e-67
 Identities = 65/205 (31%), Positives = 99/205 (48%), Gaps = 9/205 (4%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
           +       +V LG + ++S  E        ++ I  HP   +  +  + D+A+L+L RP+
Sbjct: 45  SEHHKEAYEVKLGAHQLDSYSEDAK--VSTLKDIIPHP--SYLQEGSQGDIALLQLSRPI 100

Query: 63  QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQA-GSRLRPKTLQAVDVPIIDNRQCERW 120
            +  +I PI LP     F  G      GWG +    S L PK LQ ++VP+I    C   
Sbjct: 101 TFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSL 160

Query: 121 HKSNGINV---VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQ 177
           +  +        + ++M+CAGY  G KD+CQGDSGGPL     G W+L GIVS G +C  
Sbjct: 161 YNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGA 220

Query: 178 QGQPGIYHRVAYTVDWISYIMNTAT 202
           + +PG+Y   +    WI   +    
Sbjct: 221 RNRPGVYTLASSYASWIQSKVTELQ 245

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score =  207 bits (528), Expect = 1e-67
 Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 21/208 (10%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           +   + V +G +   +  E        + KI +HP + +    D  D+A+++L +PV + 
Sbjct: 55  TENDLLVRIGKHSR-TRYERNIEKISMLEKIYIHPRYNWRENLD-RDIALMKLKKPVAFS 112

Query: 66  PHIAPICLPEKGEDFL----GQFGWAAGWGALQAGSRL-----RPKTLQAVDVPIIDNRQ 116
            +I P+CLP++         G  G   GWG L+          +P  LQ V++PI++   
Sbjct: 113 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 172

Query: 117 CERWHKSNGINVVIYDEMMCAGYR---GGAKDSCQGDSGGPLMMERT--GRWFLIGIVSA 171
           C+   +       I D M CAGY+   G   D+C+GDSGGP +M+     RW+ +GIVS 
Sbjct: 173 CKDSTRIR-----ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSW 227

Query: 172 GYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           G  C + G+ G Y  V     WI  +++
Sbjct: 228 GEGCDRDGKYGFYTHVFRLKKWIQKVID 255

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score =  205 bits (524), Expect = 1e-67
 Identities = 58/194 (29%), Positives = 82/194 (42%), Gaps = 17/194 (8%)

Query: 2   TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
            +  +    Q+  G     S        T  +  + VHP +      +  D+A+L+L   
Sbjct: 43  VSGYAQSGFQIRAGSLSRTS-----GGITSSLSSVRVHPSYS----GNNNDLAILKLSTS 93

Query: 62  VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
           +    +I    L   G D + G     AGWGA   G    P  L  V VPI+    C   
Sbjct: 94  IPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQ 153

Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQ 180
           + ++ I     ++M CAG   G KDSCQGDSGGP++        LIG VS G  CA+   
Sbjct: 154 YGTSAI----TNQMFCAGVSSGGKDSCQGDSGGPIV---DSSNTLIGAVSWGNGCARPNY 206

Query: 181 PGIYHRVAYTVDWI 194
            G+Y  V     +I
Sbjct: 207 SGVYASVGALRSFI 220

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score =  207 bits (529), Expect = 1e-67
 Identities = 62/208 (29%), Positives = 100/208 (48%), Gaps = 21/208 (10%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           +   + V +G +      E        + KI +HP + +    D  D+A+++L +PV + 
Sbjct: 85  TENDLLVRIGKHSRTR-YERNIEKISMLEKIYIHPRYNWRENLD-RDIALMKLKKPVAFS 142

Query: 66  PHIAPICLPEKGEDFL----GQFGWAAGWGALQAGSRL-----RPKTLQAVDVPIIDNRQ 116
            +I P+CLP++         G  G   GWG L+          +P  LQ V++PI++   
Sbjct: 143 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 202

Query: 117 CERWHKSNGINVVIYDEMMCAGYR---GGAKDSCQGDSGGPLMMERT--GRWFLIGIVSA 171
           C+   +       I D M CAGY+   G   D+C+GDSGGP +M+     RW+ +GIVS 
Sbjct: 203 CKDSTRIR-----ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSW 257

Query: 172 GYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           G  C + G+ G Y  V     WI  +++
Sbjct: 258 GEGCDRDGKYGFYTHVFRLKKWIQKVID 285

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score =  204 bits (522), Expect = 3e-67
 Identities = 52/199 (26%), Positives = 85/199 (42%), Gaps = 17/199 (8%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
            + +   +  T G   + S+     A      K+   P   FT +    D A+++L +P+
Sbjct: 41  GSGNNTSITATGGVVDLQSS----SAVKVRSTKVLQAP--GFTKETYGKDWALIKLAQPI 94

Query: 63  QYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHK 122
                  P         +       AGWGA + G     + L   +VP + +  C     
Sbjct: 95  NQ-----PTLKIATTTAYNQGTFTVAGWGANREGGSQ-QRYLLKANVPFVSDAACRSSSS 148

Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGRWFLIGIVSAGYSCAQQGQP 181
                 ++ +EM+CAGY    +D+CQGDSGGP+   +    W  +GIVS G  CA++G+ 
Sbjct: 149 FI----LVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKY 204

Query: 182 GIYHRVAYTVDWISYIMNT 200
           G+Y  V+     I+    T
Sbjct: 205 GVYTEVSTFASAIASAART 223

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score =  215 bits (550), Expect = 3e-67
 Identities = 68/197 (34%), Positives = 104/197 (52%), Gaps = 10/197 (5%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
              S + ++V  G    +   E      FGV++I +H   ++      YD+A+L+L+  V
Sbjct: 435 GVESPKILRVYSGILNQSEIKEDTS--FFGVQEIIIHD--QYKMAESGYDIALLKLETTV 490

Query: 63  QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
            Y     PICLP KG+  +     W  GWG  +   ++   TLQ   +P++ N +C++ +
Sbjct: 491 NYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKI-QNTLQKAKIPLVTNEECQKRY 549

Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
           + +     I  +M+CAGYR G KD+C+GDSGGPL  +    W L+GI S G  CAQ+ +P
Sbjct: 550 RGH----KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERP 605

Query: 182 GIYHRVAYTVDWISYIM 198
           G+Y  V   VDWI    
Sbjct: 606 GVYTNVVEYVDWILEKT 622

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score =  206 bits (526), Expect = 5e-67
 Identities = 61/206 (29%), Positives = 90/206 (43%), Gaps = 12/206 (5%)

Query: 3   NTASARQVQVTLGDYVINSAVEPL---PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLD 59
                   ++  G   +          P     V KI +H   K++  ++  D+A++++ 
Sbjct: 51  IKKKVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHE--KYSASSEANDIALMKIT 108

Query: 60  RPVQYMPHIAPICLPEKGEDFL--GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
            PV     I P CLP+         Q  W AGWG LQ  +R     LQ   V +ID   C
Sbjct: 109 PPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLC 168

Query: 118 ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM--MERTGRWFLIGIVSAGYSC 175
                 NG    I    +CAGY  G  D+CQGDSGGPLM        + ++GI S G  C
Sbjct: 169 NSTRWYNGR---IRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGC 225

Query: 176 AQQGQPGIYHRVAYTVDWISYIMNTA 201
           A+  +PG+Y      ++WI+  + + 
Sbjct: 226 ARAKRPGVYTSTWSYLNWIASKIGST 251

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score =  204 bits (522), Expect = 5e-67
 Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 11/199 (5%)

Query: 2   TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
           ++  S    ++ LG +    + E       GV+   +HP  ++ P     DVA++ L   
Sbjct: 58  SDLLSPSDFKIILGKHWRLRSDEN--EQHLGVKHTTLHP--QYDPNTFENDVALVELLES 113

Query: 62  VQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
                 + PICLPE  +   G     +GWG         P+TL  +++PI+D+  C++ +
Sbjct: 114 PVLNAFVMPICLPEGPQQE-GAMVIVSGWGKQFLQRF--PETLMEIEIPIVDHSTCQKAY 170

Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM--ERTGRWFLIGIVSAGYSCAQQG 179
               +   +  +M+CAG + G KD+C GDSGGP++      G+W+L+G VS G  C ++ 
Sbjct: 171 --APLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKD 228

Query: 180 QPGIYHRVAYTVDWISYIM 198
           + G+Y  + +  DWI  + 
Sbjct: 229 RYGVYSYIHHNKDWIQRVT 247

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score =  205 bits (524), Expect = 7e-67
 Identities = 67/205 (32%), Positives = 96/205 (46%), Gaps = 11/205 (5%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL---- 58
           ++     V V LG +  N   +     TFG+ K   +  +     +D +D+ ++RL    
Sbjct: 79  HSPPRDSVSVVLGQHFFNRTTDVTQ--TFGIEKYIPYTLYSVFNPSD-HDLVLIRLKKKG 135

Query: 59  DRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
           DR       + PICLPE G  F  G     AGWG L         +L+   VP++ + +C
Sbjct: 136 DRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKC 195

Query: 118 ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQ 177
                       I   M+CAGY     D+CQGDSGGPL  E+ G  +L GI+S G  C +
Sbjct: 196 SSPEVYGAD---ISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGR 252

Query: 178 QGQPGIYHRVAYTVDWISYIMNTAT 202
             +PG+Y RVA  VDWI+  +    
Sbjct: 253 LHKPGVYTRVANYVDWINDRIRPPR 277

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score =  204 bits (521), Expect = 9e-67
 Identities = 67/205 (32%), Positives = 96/205 (46%), Gaps = 11/205 (5%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRL---- 58
           ++     V V LG +  N   +     TFG+ K   +  +     +D +D+ ++RL    
Sbjct: 44  HSPPRDSVSVVLGQHFFNRTTDVTQ--TFGIEKYIPYTLYSVFNPSD-HDLVLIRLKKKG 100

Query: 59  DRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
           DR       + PICLPE G  F  G     AGWG L         +L+   VP++ + +C
Sbjct: 101 DRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKC 160

Query: 118 ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQ 177
                       I   M+CAGY     D+CQGDSGGPL  E+ G  +L GI+S G  C +
Sbjct: 161 SSPEVYGAD---ISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGR 217

Query: 178 QGQPGIYHRVAYTVDWISYIMNTAT 202
             +PG+Y RVA  VDWI+  +    
Sbjct: 218 LHKPGVYTRVANYVDWINDRIRPPR 242

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score =  203 bits (519), Expect = 1e-66
 Identities = 47/195 (24%), Positives = 73/195 (37%), Gaps = 11/195 (5%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
                ++V  G +  +         T  V    +H  +     +   D+A+L L   +  
Sbjct: 49  VLPNNIRVIAGLWQQSD---TSGTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISL 105

Query: 65  MPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKS 123
             +I    LP    +   G     +GWG     + L P  LQ   +P+I   QC      
Sbjct: 106 GGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNL-PDILQKSSIPVITTAQCTAAMVG 164

Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS----AGYSCAQQG 179
            G    I+D  +C     G   +C GDSGGPL     G   ++G+ S    +G       
Sbjct: 165 VGGAN-IWDNHICVQDPAGNTGACNGDSGGPLNCP-DGGTRVVGVTSWVVSSGLGACLPD 222

Query: 180 QPGIYHRVAYTVDWI 194
            P +Y RV+  + WI
Sbjct: 223 YPSVYTRVSAYLGWI 237

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score =  203 bits (518), Expect = 2e-66
 Identities = 60/201 (29%), Positives = 89/201 (44%), Gaps = 10/201 (4%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP- 61
           +        V LG   +NS  +      F V  + +H  +     A   D+A+L++    
Sbjct: 50  DYPKKEDYIVYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKE 107

Query: 62  ---VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
               Q    I  I LP    D   G      G+G   +   L P+ L+   V +I +R+C
Sbjct: 108 GRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHREC 167

Query: 118 ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQ 177
           ++ H        +  +M+CA       DSCQGDSGGPL+    GR  L GIVS G  CA 
Sbjct: 168 QQPHYYGSE---VTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCAL 224

Query: 178 QGQPGIYHRVAYTVDWISYIM 198
           + +PG+Y RV++ + WI    
Sbjct: 225 KDKPGVYTRVSHFLPWIRSHT 245

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score =  207 bits (528), Expect = 2e-66
 Identities = 64/207 (30%), Positives = 91/207 (43%), Gaps = 17/207 (8%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQAD----RYDVAVLRLDRP 61
              + +V  G     S          GV+ +  H  +      +      D+A++ L  P
Sbjct: 166 VLSRWRVFAGAVAQASP----HGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSP 221

Query: 62  VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
           +    +I P+CLP  G+  + G+     GWG  Q   +     LQ   VPII N  C   
Sbjct: 222 LPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQ-AGVLQEARVPIISNDVCNGA 280

Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM----MERTGRWFLIGIVSAGYSCA 176
                    I  +M CAGY  G  D+CQGDSGGP +    + RT RW L GIVS G  CA
Sbjct: 281 DFYGNQ---IKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCA 337

Query: 177 QQGQPGIYHRVAYTVDWISYIMNTATN 203
              +PG+Y +V+   +WI   + T + 
Sbjct: 338 LAQKPGVYTKVSDFREWIFQAIKTHSE 364

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score =  208 bits (530), Expect = 2e-66
 Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 14/204 (6%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
               A  + + +G     S              + +H  +      D  D+A+++L+  V
Sbjct: 205 QKHDASALDIRMGTLKRLSP----HYTQAWSEAVFIHEGYTHDAGFD-NDIALIKLNNKV 259

Query: 63  QYMPHIAPICLPEKGEDFL---GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCER 119
               +I PICLP K  +        G A+GWG  Q G     + L  VD+PI+D+++C  
Sbjct: 260 VINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRGFL--ARNLMYVDIPIVDHQKCTA 317

Query: 120 W-HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM--ERTGRWFLIGIVSAG-YSC 175
              K       +   M+CAG   G KDSC+GDSGG L+     T RWF+ GIVS G  +C
Sbjct: 318 AYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNC 377

Query: 176 AQQGQPGIYHRVAYTVDWISYIMN 199
            + GQ G+Y +V   + WI  I++
Sbjct: 378 GEAGQYGVYTKVINYIPWIENIIS 401

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score =  202 bits (516), Expect = 4e-66
 Identities = 70/205 (34%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
           +      ++V L +  +    + LP     V +I VHP  +F       D+A+L L+ PV
Sbjct: 49  DVKDLATLRVQLREQHLYYQDQLLP-----VSRIIVHP--QFYIIQTGADIALLELEEPV 101

Query: 63  QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRL-RPKTLQAVDVPIIDNRQCERW 120
                +  + LP   E F  G   W  GWG +     L  P  L+ V VPI++N  C+  
Sbjct: 102 NISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAK 161

Query: 121 HKSNGIN----VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA 176
           +           +I D+M+CAG     +DSCQGDSGGPL+ +  G W   G+VS G  CA
Sbjct: 162 YHLGAYTGDDVRIIRDDMLCAGN--SQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCA 219

Query: 177 QQGQPGIYHRVAYTVDWISYIMNTA 201
           Q  +PGIY RV Y +DWI + +   
Sbjct: 220 QPNRPGIYTRVTYYLDWIHHYVPKK 244

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score =  201 bits (514), Expect = 8e-66
 Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 14/196 (7%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
             +  +  LG + ++   +        V ++   P           D+ +++L RP    
Sbjct: 46  DLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEG--------SDLVLMKLARPAVLD 97

Query: 66  PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
             ++ I LP  G            GWG     +      L+   + I+ N +C + H+  
Sbjct: 98  DFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINY--DGLLRVAHLYIMGNEKCSQHHRGK 155

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
                + +  +CAG        C+GD GGPL+ E+     ++G++  G  CA   +PGI+
Sbjct: 156 VT---LNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIF 212

Query: 185 HRVAYTVDWISYIMNT 200
            RVAY   WI  I+ T
Sbjct: 213 VRVAYYAKWIHKIILT 228

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score =  201 bits (513), Expect = 1e-65
 Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 11/196 (5%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           +    +V LG   +    E   +   GV  I VH   K+     R D+A+++L   V+  
Sbjct: 62  NTLTYRVALGKNNLEVEDEA-GSLYVGVDTIFVHE--KWNSFLVRNDIALIKLAETVELG 118

Query: 66  PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
             I   CLP +G         +  GWG L     +    LQ    P++D   C +     
Sbjct: 119 DTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPI-AAELQQGLQPVVDYATCSQRDWWG 177

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS--AGYSCAQQGQPG 182
                + + M+CAG  G    +C GDSGGPL  +  G+W + GIVS  +G SC    +P 
Sbjct: 178 TT---VKETMVCAGGDGV-ISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPT 233

Query: 183 IYHRVAYTVDWISYIM 198
           ++ RV+  +DWI+  +
Sbjct: 234 VFTRVSAYIDWINQKL 249

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score =  200 bits (510), Expect = 3e-65
 Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 10/198 (5%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
                +V +G++ +N           GV+KI VHPY+     A  YD+A+LRL + V   
Sbjct: 49  RELTFRVVVGEHNLNQNNGT--EQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLN 106

Query: 66  PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
            ++    LP  G         +  GWG  +   +L  +TLQ   +P +D   C       
Sbjct: 107 SYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQL-AQTLQQAYLPTVDYAICSSSSYWG 165

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS--AGYSCAQQGQPG 182
                + + M+CAG  G  +  CQGDSGGPL     G++ + G+ S  +   C    +P 
Sbjct: 166 ST---VKNSMVCAGGDGV-RSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPT 221

Query: 183 IYHRVAYTVDWISYIMNT 200
           ++ RV+  + WI+ ++ +
Sbjct: 222 VFTRVSAYISWINNVIAS 239

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score =  205 bits (523), Expect = 5e-65
 Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 21/208 (10%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           +   + V +G +      E        + KI +HP + +    D  D+A+++L +PV + 
Sbjct: 220 TENDLLVRIGKHSRTR-YERNIEKISMLEKIYIHPRYNWRENLD-RDIALMKLKKPVAFS 277

Query: 66  PHIAPICLPEKGEDFL----GQFGWAAGWGALQAGSRLR-----PKTLQAVDVPIIDNRQ 116
            +I P+CLP++         G  G   GWG L+           P  LQ V++PI++   
Sbjct: 278 DYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPV 337

Query: 117 CERWHKSNGINVVIYDEMMCAGYR---GGAKDSCQGDSGGPLMMERT--GRWFLIGIVSA 171
           C+   +       I D M CAGY+   G   D+C+GDSGGP +M+     RW+ +GIVS 
Sbjct: 338 CKDSTRIR-----ITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSW 392

Query: 172 GYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           G  C + G+ G Y  V     WI  +++
Sbjct: 393 GEGCDRDGKYGFYTHVFRLKKWIQKVID 420

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score =  198 bits (506), Expect = 1e-64
 Identities = 54/199 (27%), Positives = 85/199 (42%), Gaps = 10/199 (5%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           ++R  QV LG+Y  +               + VHP +     A   D+A+++L R  Q  
Sbjct: 47  TSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLG 106

Query: 66  PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
             +    LP  G+        + +GWG L  G  L P  LQ   +P +D   C +W    
Sbjct: 107 DKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPL-PDKLQQALLPTVDYEHCSQWDWWG 165

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGRWFLIGIVS--AGYSCAQQGQP 181
                +   M+CAG     +  C GDSGGPL      G W + G+ S  + + C    +P
Sbjct: 166 IT---VKKTMVCAGG--DTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKP 220

Query: 182 GIYHRVAYTVDWISYIMNT 200
            ++ RV+  +DWI   + +
Sbjct: 221 TVFTRVSAFIDWIDETIAS 239

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score =  198 bits (505), Expect = 2e-64
 Identities = 60/207 (28%), Positives = 85/207 (41%), Gaps = 18/207 (8%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLD--- 59
                  + V LG        E      F V K  VH   +F       D+A+L+L    
Sbjct: 51  ERFPPHHLTVILGRTYRVVPGEEEQ--KFEVEKYIVHK--EFDDDTYDNDIALLQLKSDS 106

Query: 60  -RPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
            R  Q    +  +CLP              +G+G  +A S    + L+   V +  + +C
Sbjct: 107 SRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRC 166

Query: 118 ERWHKSNGINVVIYDEMMCAGYRGG------AKDSCQGDSGGPLMMERTGRWFLIGIVSA 171
              H  N     + D M+CAG            D+CQGDSGGPL+    GR  L+GI+S 
Sbjct: 167 TSQHLLNRT---VTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISW 223

Query: 172 GYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G  C Q+  PG+Y +V   +DWI   M
Sbjct: 224 GLGCGQKDVPGVYTKVTNYLDWIRDNM 250

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score =  197 bits (502), Expect = 4e-64
 Identities = 49/198 (24%), Positives = 74/198 (37%), Gaps = 16/198 (8%)

Query: 2   TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
           +        +V LG    N            V K+   P            + +L+L+R 
Sbjct: 43  SCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSG--------SQLVLLKLERS 94

Query: 62  VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
           V     +A ICLP +      G     AGWG  +         L    + +I N++C   
Sbjct: 95  VTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGN--DTVLNVALLNVISNQECNIK 152

Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQ 180
           H+       + +  MC         +C+GD GGPL       W L GI+     CA+   
Sbjct: 153 HRGR-----VRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRW 207

Query: 181 PGIYHRVAYTVDWISYIM 198
           P ++ RV+  VDWI  +M
Sbjct: 208 PAVFTRVSVFVDWIHKVM 225

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score =  199 bits (509), Expect = 5e-64
 Identities = 58/211 (27%), Positives = 92/211 (43%), Gaps = 22/211 (10%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQAD-----RYDVAVLRLDR 60
             R+  + +G   + ++     +       + +HP +K     +       D+A++RL  
Sbjct: 124 GNREPTMYVGSTSVQTS-RLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKD 182

Query: 61  PVQYMPHIAPICLPEKGEDFL---GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
           PV+  P ++PICLP    D+    G  G  +GWG  +     R   L+A  +P+   R+C
Sbjct: 183 PVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRD--RAVRLKAARLPVAPLRKC 240

Query: 118 ERWHKSNGI----NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER---TGRWFLIGIVS 170
           +              V    M+CAG   G  DSC+GDSGG   ++      +++  G+VS
Sbjct: 241 KEVKVEKPTADAEAYVFTPNMICAGGEKG-MDSCKGDSGGAFAVQDPNDKTKFYAAGLVS 299

Query: 171 AGYSCAQQGQPGIYHRVAYTVDWISYIMNTA 201
            G  C   G  G+Y RV   VDWI   M   
Sbjct: 300 WGPQC---GTYGLYTRVKNYVDWIMKTMQEN 327

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score =  202 bits (514), Expect = 6e-64
 Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 31/219 (14%)

Query: 3   NTASARQVQVTLGDYVINSAVEP----------LPAYTFGVRKINVHPYFKFTPQADRYD 52
           +       ++ LG++ I++  +            P    G+ K  +H   K+  +   +D
Sbjct: 166 HGLQNDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHE--KYDARHIMHD 223

Query: 53  VAVLRLDRPVQYMPHIAPICLPEKGE----DFLGQFGWAAGWGALQAGSRLRPKTLQAVD 108
           +A+L+L+R V +  HI PICLP   E           +  GWG  + GS      L   +
Sbjct: 224 IALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTTENGS--SSDVLLQAN 281

Query: 109 VPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM------ERTGR 162
           VP+     C + ++       +    +C G     +DSC+GDSGGPL        E   +
Sbjct: 282 VPLQPRSACSQAYRRA-----VPLSQLCVGGGDL-QDSCKGDSGGPLQAPAQYLGEYAPK 335

Query: 163 WFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNT 200
               GIVS G  +C Q   PG+Y  V   V WI+  M +
Sbjct: 336 MVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMAS 374

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score =  196 bits (500), Expect = 1e-63
 Identities = 55/197 (27%), Positives = 87/197 (44%), Gaps = 16/197 (8%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
            +      +V LG +   +    +      V ++ + P           D+A+L+L  P 
Sbjct: 63  KSPRPSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLEPTR--------KDIALLKLSSPA 112

Query: 63  QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
                + P CLP            +  GWG  Q         L+   +P+I+N+ C R+ 
Sbjct: 113 VITDKVIPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLKEAQLPVIENKVCNRYE 170

Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
             NG    +    +CAG+  G  DSCQGD+GGPL+     ++ L G+ S G  CA+  +P
Sbjct: 171 FLNGR---VQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKP 227

Query: 182 GIYHRVAYTVDWISYIM 198
           G+Y RV+  V WI  +M
Sbjct: 228 GVYVRVSRFVTWIEGVM 244

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score =  195 bits (499), Expect = 1e-63
 Identities = 52/196 (26%), Positives = 86/196 (43%), Gaps = 11/196 (5%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           SAR  +V LG++ +N+           V  + +H  +     A  YD+A+LRL+      
Sbjct: 49  SARTWRVVLGEHNLNTNEGK--EQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLN 106

Query: 66  PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
             +    LP   +        +  GWG    G  L   +L+   +P +D+  C       
Sbjct: 107 SAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPL-SDSLKQAWLPSVDHATCSSSGWWG 165

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS--AGYSCAQQGQPG 182
                +   M+CAG  GGA   C GDSGGPL  +  G +++ G+ S  +   C    +P 
Sbjct: 166 ST---VKTTMVCAG--GGANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPT 220

Query: 183 IYHRVAYTVDWISYIM 198
           ++ RV+  + W++ IM
Sbjct: 221 VFTRVSAYISWMNGIM 236

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score =  194 bits (495), Expect = 7e-63
 Identities = 55/189 (29%), Positives = 89/189 (47%), Gaps = 12/189 (6%)

Query: 11  QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAP 70
            V  G++   S+ E +      + K+  +   K+       D+ +L+L     +   ++ 
Sbjct: 65  VVVAGEFDQGSSSEKIQ--KLKIAKVFKNS--KYNSLTINNDITLLKLSTAASFSQTVSA 120

Query: 71  ICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV 129
           +CLP   +DF  G      GWG  +  +   P  LQ   +P++ N  C+++  +      
Sbjct: 121 VCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGTK----- 175

Query: 130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY 189
           I D M+CAG       SC GDSGGPL+ ++ G W L+GIVS G S      PG+Y RV  
Sbjct: 176 IKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTA 233

Query: 190 TVDWISYIM 198
            V+W+   +
Sbjct: 234 LVNWVQQTL 242

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score =  193 bits (492), Expect = 1e-62
 Identities = 63/197 (31%), Positives = 94/197 (47%), Gaps = 14/197 (7%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
            A++ +V +GD   N+  E        V  +  H   +FT +   +D+AVLRL  P+ + 
Sbjct: 46  QAKRFKVRVGDR--NTEQEEGGEAVHEVEVVIKHN--RFTKETYDFDIAVLRLKTPITFR 101

Query: 66  PHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNG 125
            ++AP  LP       G     +GWG   +     P  LQ +D P++   +CE  +    
Sbjct: 102 MNVAPASLPTA-PPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPGK- 159

Query: 126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
               I   M C G+  G KDSCQGDSGGP++        L G+VS G  CAQ+ +PG+Y 
Sbjct: 160 ----ITSNMFCVGFLEGGKDSCQGDSGGPVVC----NGQLQGVVSWGDGCAQKNKPGVYT 211

Query: 186 RVAYTVDWISYIMNTAT 202
           +V   V WI   +   +
Sbjct: 212 KVYNYVKWIKNTIAANS 228

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score =  192 bits (491), Expect = 2e-62
 Identities = 41/200 (20%), Positives = 72/200 (36%), Gaps = 15/200 (7%)

Query: 2   TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
            +      + +  G     +        +   +KI      ++ P   + + AV+  + P
Sbjct: 43  VDGTKPSDISIHYGSSYRTT-----KGTSVMAKKI-YIV--RYHPLTMQNNYAVIETEMP 94

Query: 62  VQYMPH-IAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCER 119
           ++        I LP    D         +GWG+    S      L   +  ++D + CE 
Sbjct: 95  IKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEE 154

Query: 120 WHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQG 179
            +K    +  IYD + CAG          GD+G P +        L+G+ S   S     
Sbjct: 155 QYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQN----GTLVGVASYISSMP-SE 209

Query: 180 QPGIYHRVAYTVDWISYIMN 199
            P ++ RV Y V  I  I++
Sbjct: 210 FPSVFLRVGYYVLDIKDIIS 229

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score =  192 bits (491), Expect = 2e-62
 Identities = 57/197 (28%), Positives = 89/197 (45%), Gaps = 11/197 (5%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           S+R  +V LG + +++      +    V K+ VH  +     ++  D+A+L+L  PV   
Sbjct: 49  SSRTYRVVLGRHSLSTNEPG--SLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLT 106

Query: 66  PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
             I   CLP  G         +  GWG LQ      P  LQ   + ++D   C +     
Sbjct: 107 DKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGAS-PDILQQGQLLVVDYATCSKPGWWG 165

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGRWFLIGIVS--AGYSCAQQGQP 181
                +   M+CAG  G    SC GDSGGPL      G+W + GIVS  +   C    +P
Sbjct: 166 ST---VKTNMICAGGDGI-ISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKP 221

Query: 182 GIYHRVAYTVDWISYIM 198
            ++ RV+  +DWI+ ++
Sbjct: 222 SVFTRVSNYIDWINSVI 238

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score =  191 bits (487), Expect = 9e-62
 Identities = 52/197 (26%), Positives = 81/197 (41%), Gaps = 10/197 (5%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
                +   V LG + + S  E     T  ++K       + T      D+ +++L    
Sbjct: 47  RFTKGQSPTVVLGAHSL-SKNEA-SKQTLEIKKFIPFS--RVTSDPQSNDIMLVKLQTAA 102

Query: 63  QYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHK 122
           +   H+  + +  K     G      GWGA    S     TL+ V V ++  + C     
Sbjct: 103 KLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSY 162

Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPG 182
            NG +  I  +M+CAG   G KDSC+GD+GGPL+     +     IVS G+ C    +PG
Sbjct: 163 YNG-DPFITKDMVCAGDAKGQKDSCKGDAGGPLIC----KGVFHAIVSGGHECGVATKPG 217

Query: 183 IYHRVAYT-VDWISYIM 198
           IY  +      WI   +
Sbjct: 218 IYTLLTKKYQTWIKSNL 234

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score =  189 bits (483), Expect = 3e-61
 Identities = 57/195 (29%), Positives = 88/195 (45%), Gaps = 14/195 (7%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
              Q+++ LG + ++S     P  TF ++    HP +K    A   D+A+L+LD  V+  
Sbjct: 46  RMAQLRLVLGLHTLDS-----PGLTFHIKAAIQHPRYK-PVPALENDLALLQLDGKVKPS 99

Query: 66  PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
             I P+ LP K +    G     AGWG    G RL  + L+ +D+ ++D R C      N
Sbjct: 100 RTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRL-SRVLRELDLQVLDTRMCNNSRFWN 158

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGI 183
           G    +   M+C       +  C+GDSGGPL+        L G++S     C    +P +
Sbjct: 159 GS---LSPSMVCLAADSKDQAPCKGDSGGPLVCG--KGRVLAGVLSFSSRVCTDIFKPPV 213

Query: 184 YHRVAYTVDWISYIM 198
              VA  V WI  + 
Sbjct: 214 ATAVAPYVSWIRKVT 228

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score =  187 bits (477), Expect = 2e-60
 Identities = 53/196 (27%), Positives = 88/196 (44%), Gaps = 20/196 (10%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
             ++  +++V +G   ++          + V    V+    +     R DVA++ L  P+
Sbjct: 45  GLSNLNRLKVHVGTNYLSE-----SGDVYDVEDAVVNK--NYDDFLLRNDVALVHLTNPI 97

Query: 63  QYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHK 122
           ++   + PI L    ED         GWG+ + G    P  LQ +++ +   +QCER   
Sbjct: 98  KFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNT-PNALQEIELIVHPQKQCERDQW 156

Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPG 182
                  + D  +C   + G + +C GDSGGPL+         IGIVS G  CA  G+P 
Sbjct: 157 R------VIDSHICTLTKRG-EGACHGDSGGPLVAN----GAQIGIVSFGSPCA-LGEPD 204

Query: 183 IYHRVAYTVDWISYIM 198
           +Y RV+  V WI+  +
Sbjct: 205 VYTRVSSFVSWINANL 220

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score =  186 bits (476), Expect = 3e-60
 Identities = 59/193 (30%), Positives = 84/193 (43%), Gaps = 14/193 (7%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
             +QV LG+  IN              K  VHP   +       D+ +++L         
Sbjct: 44  SGIQVRLGEDNINVVEGN--EQFISASKSIVHP--SYNSNTLNNDIMLIKLKSAASLNSR 99

Query: 68  IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +A I LP       G     +GWG  ++     P  L+ +  PI+ +  C+  +      
Sbjct: 100 VASISLPTSCAS-AGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ--- 155

Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I   M CAGY  G KDSCQGDSGGP++        L GIVS G  CAQ+ +PG+Y +V
Sbjct: 156 --ITSNMFCAGYLEGGKDSCQGDSGGPVVCS----GKLQGIVSWGSGCAQKNKPGVYTKV 209

Query: 188 AYTVDWISYIMNT 200
              V WI   + +
Sbjct: 210 CNYVSWIKQTIAS 222

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  194 bits (494), Expect = 1e-59
 Identities = 52/200 (26%), Positives = 86/200 (43%), Gaps = 17/200 (8%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY- 64
              + Q+                    V +I  H    +     + D+A++ + +     
Sbjct: 368 KTHRYQIWTTVVDWIHPDLK-RIVIEYVDRIIFHE--NYNAGTYQNDIALIEMKKDGNKK 424

Query: 65  ---MPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
              +P   P C+P     F        +GWG  +   R    +LQ  +V +I N  C ++
Sbjct: 425 DCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDNER--VFSLQWGEVKLISN--CSKF 480

Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM-MERTGRWFLIGIVSAGYSCAQQG 179
           + +         EM CAG   G+ D+C+GDSGGPL+ M+     ++ G+VS G +C +  
Sbjct: 481 YGNR----FYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPE 536

Query: 180 QPGIYHRVAYTVDWISYIMN 199
            PG+Y +VA   DWISY + 
Sbjct: 537 FPGVYTKVANYFDWISYHVG 556

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score =  185 bits (472), Expect = 1e-59
 Identities = 52/199 (26%), Positives = 77/199 (38%), Gaps = 13/199 (6%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
           +  ++ LG +                 K                D+ ++RLD PV+   H
Sbjct: 47  KNFRIKLGMHSK-KVPNEDEQTRVPKEKFFCLS--SKNYTLWDKDIMLIRLDSPVKNSKH 103

Query: 68  IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           IAP  LP       G      GWG +       P     V++ +++   C   +      
Sbjct: 104 IAPFSLPSSPPSV-GSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYP--EFE 160

Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGY-SCAQQGQPGIYHR 186
           +      +CAG   G KD+C+GDSGGPL+          GI S G   CAQ  +P  Y +
Sbjct: 161 LPATSRTLCAGILEGGKDTCKGDSGGPLIC----NGQFQGIASWGDDPCAQPHKPAAYTK 216

Query: 187 VAYTVDWISYIM--NTATN 203
           V   +DWI  I+  NT  +
Sbjct: 217 VFDHLDWIENIIAGNTDAS 235

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score =  184 bits (470), Expect = 2e-59
 Identities = 51/194 (26%), Positives = 83/194 (42%), Gaps = 17/194 (8%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            +  V LG   +               K   HP   ++ Q    D+ +++L+   +    
Sbjct: 45  NEYTVHLGSDTLGDRRAQ----RIKASKSFRHP--GYSTQTHVNDLMLVKLNSQARLSSM 98

Query: 68  IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           +  + LP +  +  G     +GWG   +     P  L  VDV +I  + C + +K     
Sbjct: 99  VKKVRLPSR-CEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKD---- 153

Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHR 186
            ++ + M+CAG     K++C GDSGGPL+     R  L G+VS G + C Q   PG+Y +
Sbjct: 154 -LLENSMLCAGIPDSKKNACNGDSGGPLVC----RGTLQGLVSWGTFPCGQPNDPGVYTQ 208

Query: 187 VAYTVDWISYIMNT 200
           V     WI+  M  
Sbjct: 209 VCKFTKWINDTMKK 222

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score =  185 bits (472), Expect = 6e-59
 Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 23/199 (11%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
             R + V       +            +  ++VH   ++   A   D+++L L+ P+Q  
Sbjct: 98  LHRNITVKTYFNRTSQDPL-----MIKITHVHVHM--RYDADAGENDLSLLELEWPIQCP 150

Query: 66  PHIAPICLPEKG--EDFL--GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
               P+C PEK   E  L     G  +GW            +L    V +++  +C +  
Sbjct: 151 GAGLPVCTPEKDFAEHLLIPRTRGLLSGWARNGTDL---GNSLTTRPVTLVEGEECGQVL 207

Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQP 181
                NV +     C      +  +     G  +  E  G WFL G++ +      Q   
Sbjct: 208 -----NVTVTTRTYCER---SSVAAMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQAHM 258

Query: 182 GIYHRVAYTVDWISYIMNT 200
            +  +V+    W   IMN 
Sbjct: 259 VLVTKVSRYSLWFKQIMNA 277

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score =  183 bits (466), Expect = 1e-58
 Identities = 52/197 (26%), Positives = 82/197 (41%), Gaps = 17/197 (8%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
           R +++ LG +   +             K          P     D+ ++RL RPV Y  H
Sbjct: 47  RNIRIKLGMHSK-NIRNEDEQIRVPRGKYFCLNTK--FPNGLDKDIMLIRLRRPVTYSTH 103

Query: 68  IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           IAP+ LP +     G      GWG +   +   P      ++ I+ ++ CE  +     +
Sbjct: 104 IAPVSLPSRSRGV-GSRCRIMGWGKISTTTY--PDVPHCTNIFIVKHKWCEPLYPWVPAD 160

Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHR 186
                  +CAG   G +D+C GDSGGPL+        + GIV+ G   C Q  +P +Y +
Sbjct: 161 ----SRTLCAGILKGGRDTCHGDSGGPLICN----GEMHGIVAGGSEPCGQHLKPAVYTK 212

Query: 187 VAYTVDWISYIM--NTA 201
           V    +WI  I+  N  
Sbjct: 213 VFDYNNWIQSIIAGNRT 229

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score =  182 bits (464), Expect = 2e-58
 Identities = 56/193 (29%), Positives = 90/193 (46%), Gaps = 15/193 (7%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
            +V+V LG++ I               ++  HP   ++      D+ +++L +P     +
Sbjct: 44  SRVEVRLGEHNIKVTEGS--EQFISSSRVIRHP--NYSSYNIDNDIMLIKLSKPATLNTY 99

Query: 68  IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           + P+ LP       G     +GWG   + +      LQ +++PI+    C   +      
Sbjct: 100 VQPVALPTSCAP-AGTMCTVSGWGNTMSSTAD-SNKLQCLNIPILSYSDCNNSYPGM--- 154

Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV 187
             I + M CAGY  G KDSCQGDSGGP++        L G+VS GY CA+ G PG+Y +V
Sbjct: 155 --ITNAMFCAGYLEGGKDSCQGDSGGPVVCN----GELQGVVSWGYGCAEPGNPGVYAKV 208

Query: 188 AYTVDWISYIMNT 200
               DW++  M +
Sbjct: 209 CIFNDWLTSTMAS 221

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score =  184 bits (470), Expect = 2e-58
 Identities = 37/174 (21%), Positives = 65/174 (37%), Gaps = 18/174 (10%)

Query: 30  TFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG--EDFL--GQFG 85
              +  ++VH   ++   A   D+++L L+ P+Q      P+C PEK   E  L     G
Sbjct: 158 MIKITHVHVHM--RYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRG 215

Query: 86  WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKD 145
             +GW            +L    V +++  +C +       NV +     C      +  
Sbjct: 216 LLSGWARNGTDL---GNSLTTRPVTLVEGEECGQVL-----NVTVTTRTYCER---SSVA 264

Query: 146 SCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           +     G  +  E  G WFL G++ +      Q    +  +V+    W   IMN
Sbjct: 265 AMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIMN 317

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score =  181 bits (462), Expect = 4e-58
 Identities = 61/196 (31%), Positives = 92/196 (46%), Gaps = 16/196 (8%)

Query: 5   ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQY 64
           A+  +VQV LG + + S  EP     + V +   HP     P    +D+ +L+L      
Sbjct: 46  AADGKVQVLLGAHSL-SQPEP-SKRLYDVLRAVPHP--DSQPDTIDHDLLLLQLSEKATL 101

Query: 65  MPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKS 123
            P + P+       D   G     AGWG +    R  P +LQ V +P++D   C R    
Sbjct: 102 GPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRR-PDSLQHVLLPVLDRATCNRRTHH 160

Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPG 182
           +G    I + +MCA      +DSC+GD+GGPL+        L G+V++G   C  + +PG
Sbjct: 161 DGA---ITERLMCAE--SNRRDSCKGDAGGPLV----CGGVLEGVVTSGSRVCGNRKKPG 211

Query: 183 IYHRVAYTVDWISYIM 198
           IY RVA    WI  ++
Sbjct: 212 IYTRVASYAAWIDSVL 227

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score =  180 bits (460), Expect = 7e-58
 Identities = 54/196 (27%), Positives = 91/196 (46%), Gaps = 15/196 (7%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
           +  +V LG Y ++   E      F   K   HP   ++      D+ +++L+R ++    
Sbjct: 46  KVFRVRLGHYSLSPVYES-GQQMFQGVKSIPHP--GYSHPGHSNDLMLIKLNRRIRPTKD 102

Query: 68  IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           + PI +        G     +GWG  ++     PK LQ +++ ++  ++CE  +      
Sbjct: 103 VRPINVSSH-CPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPRQ--- 158

Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHR 186
             I D M CAG + G +DSCQGDSGGP++        L G+VS G Y CA+  +PG+Y  
Sbjct: 159 --IDDTMFCAGDKAG-RDSCQGDSGGPVVCN----GSLQGLVSWGDYPCARPNRPGVYTN 211

Query: 187 VAYTVDWISYIMNTAT 202
           +     WI   +   +
Sbjct: 212 LCKFTKWIQETIQANS 227

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score =  180 bits (459), Expect = 1e-57
 Identities = 57/199 (28%), Positives = 87/199 (43%), Gaps = 17/199 (8%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
             +++ LG + +   +       F   K                D+ ++RL+RPV+   H
Sbjct: 44  GNMRIYLGMHNL-KVLNKDALRRFPKEKYFCLN--TRNDTIWDKDIMLIRLNRPVRNSAH 100

Query: 68  IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           IAP+ LP       G      GWG + + +   P      ++ I+D   C+  +K     
Sbjct: 101 IAPLSLPSNPPSV-GSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYKG---- 155

Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHR 186
             +    +CAG   G KD+C+GDSGGPL+          GI+S G + CAQ  +PGIY +
Sbjct: 156 --LAATTLCAGILEGGKDTCKGDSGGPLICNGQ----FQGILSVGGNPCAQPRKPGIYTK 209

Query: 187 VAYTVDWISYIM--NTATN 203
           V    DWI  I+  NT   
Sbjct: 210 VFDYTDWIQSIISGNTDAT 228

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score =  179 bits (457), Expect = 2e-57
 Identities = 56/194 (28%), Positives = 88/194 (45%), Gaps = 15/194 (7%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLDRPVQYMP 66
           ++  V LGD+ +  + +  P     V +   HP Y    P+   +D+ ++RL        
Sbjct: 45  QKYSVRLGDHSL-QSRDQ-PEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGD 102

Query: 67  HIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
            + P+ L       +GQ    +GWG + +     P TL   +V I    +CER +     
Sbjct: 103 KVKPVQLANLCPK-VGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGK-- 159

Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYH 185
              I + M+CAG   G  D+CQGDSGGPL+ +      L GI S G   C +  +PG+Y 
Sbjct: 160 ---ITEGMVCAGSSNG-ADTCQGDSGGPLVCD----GMLQGITSWGSDPCGKPEKPGVYT 211

Query: 186 RVAYTVDWISYIMN 199
           ++     WI   M+
Sbjct: 212 KICRYTTWIKKTMD 225

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score =  178 bits (455), Expect = 4e-57
 Identities = 33/199 (16%), Positives = 67/199 (33%), Gaps = 20/199 (10%)

Query: 2   TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
                   + +      +       P  +             +  +    D+A+L L RP
Sbjct: 45  VFDQKPETIVIQYESTNLWED----PGKSDPYVSHVYLS--FYRQETMENDIAILELSRP 98

Query: 62  VQY-MPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCER 119
           ++       P  LP+       G     +G+G  Q         L++  + ++D  +C  
Sbjct: 99  LKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPK-DHDLKSAQLTVVDLDECRT 157

Query: 120 WHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQG 179
            +    +      ++ CA   G       GD+G P + +      L+G+ +       +G
Sbjct: 158 KYGPIFL----SLQVFCAQKVG--VSLESGDAGDPTVQQ----DTLVGVAAYFPKRP-EG 206

Query: 180 QPGIYHRVAYTVDWISYIM 198
            P ++ +V   V WI  I+
Sbjct: 207 APEVFTKVGSYVSWIQDII 225

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score =  178 bits (454), Expect = 7e-57
 Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 13/193 (6%)

Query: 11  QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAP 70
           Q+ LG +      E     T   ++  + P      +    D+ +++LD  V    HI P
Sbjct: 48  QMKLGVHSKKVLNED--EQTRNPKEKFICPNK-KNDEVLDKDIMLIKLDSRVSNSEHIVP 104

Query: 71  ICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVI 130
           + LP       G      GWG++       P       + ++D+  C+  +       + 
Sbjct: 105 LSLPSSPPSV-GSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPEL----LT 159

Query: 131 YDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAY 189
               +CAG   G KD+C GDSGGPL+          GIVS G + C Q  +PG+Y +V  
Sbjct: 160 EYRTLCAGILEGGKDTCGGDSGGPLICN----GQFQGIVSFGAHPCGQGLKPGVYTKVFD 215

Query: 190 TVDWISYIMNTAT 202
              WI  I+   T
Sbjct: 216 YNHWIQSIIAGNT 228

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score =  177 bits (451), Expect = 2e-56
 Identities = 52/193 (26%), Positives = 81/193 (41%), Gaps = 16/193 (8%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
               + LG + + +  EP  +          HP  ++       D+ +++LD  V     
Sbjct: 45  NSYTIGLGLHSLEADQEP-GSQMVEASLSVRHP--EYNRPLLANDLMLIKLDESVSESDT 101

Query: 68  IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           I  I +  +     G     +GWG L  G    P  LQ V+V ++    C + +      
Sbjct: 102 IRSISIASQ-CPTAGNSCLVSGWGLLANGRM--PTVLQCVNVSVVSEEVCSKLYDP---- 154

Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHR 186
            + +  M CAG     KDSC GDSGGPL+       +L G+VS G + C Q G PG+Y  
Sbjct: 155 -LYHPSMFCAGGGQDQKDSCNGDSGGPLIC----NGYLQGLVSFGKAPCGQVGVPGVYTN 209

Query: 187 VAYTVDWISYIMN 199
           +    +WI   + 
Sbjct: 210 LCKFTEWIEKTVQ 222

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score =  176 bits (449), Expect = 4e-56
 Identities = 59/198 (29%), Positives = 91/198 (45%), Gaps = 14/198 (7%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
           ++ QV LG + I +  EP       V+K   +P   + P     D+ +L+L    +   +
Sbjct: 46  KRSQVILGAHSI-TREEP-TKQIMLVKKEFPYP--CYDPATREGDLKLLQLTEKAKINKY 101

Query: 68  IAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           +  + LP+KG+D   G     AGWG     +     TL+ V++ IID + C   +  N  
Sbjct: 102 VTILHLPKKGDDVKPGTMCQVAGWGRTHNSASW-SDTLREVEITIIDRKVCNDRNHYNF- 159

Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS--CAQQGQPGIY 184
           N VI   M+CAG   G +DSC GDSG PL+          G+ S G    C     PG+Y
Sbjct: 160 NPVIGMNMVCAGSLRGGRDSCNGDSGSPLL----CEGVFRGVTSFGLENKCGDPRGPGVY 215

Query: 185 HRVAYT-VDWISYIMNTA 201
             ++   ++WI   +  A
Sbjct: 216 ILLSKKHLNWIIMTIKGA 233

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score =  187 bits (476), Expect = 1e-55
 Identities = 56/198 (28%), Positives = 87/198 (43%), Gaps = 16/198 (8%)

Query: 2   TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP 61
             +      +V LG +   +    +      V ++ + P           D+A+L+L  P
Sbjct: 606 EKSPRPSSYKVILGAHQEVNLEPHVQ--EIEVSRLFLEPTR--------KDIALLKLSSP 655

Query: 62  VQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
                 + P CLP            +  GWG  Q         L+   +P+I+N+ C R+
Sbjct: 656 AVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFG--AGLLKEAQLPVIENKVCNRY 713

Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQ 180
              NG    +    +CAG+  G  DSCQGDSGGPL+     ++ L G+ S G  CA+  +
Sbjct: 714 EFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNK 770

Query: 181 PGIYHRVAYTVDWISYIM 198
           PG+Y RV+  V WI  +M
Sbjct: 771 PGVYVRVSRFVTWIEGVM 788

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score =  175 bits (446), Expect = 2e-55
 Identities = 56/201 (27%), Positives = 82/201 (40%), Gaps = 22/201 (10%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFK---------FTPQADRYDVAVLRL 58
            + QV LG        EP       V K   HP F                  D+ +LRL
Sbjct: 48  DKYQVWLGKNNF-LEDEP-SDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRL 105

Query: 59  DRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCE 118
            +P      + PI LP +     G    A+GWG+        P  LQ V++ ++ N  C+
Sbjct: 106 SKPADITDVVKPITLPTEEPKL-GSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCD 164

Query: 119 RWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQ 177
           + H+       + D M+CAG   G   +C+ DSGGPL+ +      L GI S G   C +
Sbjct: 165 KAHEMK-----VTDAMLCAGEMDGGSYTCEHDSGGPLICD----GILQGITSWGPEPCGE 215

Query: 178 QGQPGIYHRVAYTVDWISYIM 198
             +P +Y ++     WI   M
Sbjct: 216 PTEPSVYTKLIKFSSWIRETM 236

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score =  174 bits (443), Expect = 3e-55
 Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 18/194 (9%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
             + VTLG + I    E         R+   HP  ++  +  + D+ +L+L R V+   +
Sbjct: 48  SNINVTLGAHNI-QRREN-TQQHITARRAIRHP--QYNQRTIQNDIMLLQLSRRVRRNRN 103

Query: 68  IAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           + P+ LP   E    G     AGWG +         TL+ V + +  +RQC R   S   
Sbjct: 104 VNPVALPRAQEGLRPGTLCTVAGWGRVSMRRG--TDTLREVQLRVQRDRQCLRIFGS--- 158

Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
                   +C G R   K + +GDSGGPL+          GIVS G S      P ++ R
Sbjct: 159 --YDPRRQICVGDRRERKAAFKGDSGGPLLCN----NVAHGIVSYGKSSGV--PPEVFTR 210

Query: 187 VAYTVDWISYIMNT 200
           V+  + WI   M +
Sbjct: 211 VSSFLPWIRTTMRS 224

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score =  174 bits (443), Expect = 4e-55
 Identities = 56/201 (27%), Positives = 85/201 (42%), Gaps = 22/201 (10%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFK---------FTPQADRYDVAVLRL 58
            +  + LG + +    E      F V     HP +                 +D+ +LRL
Sbjct: 45  NKSVILLGRHSL-FHPED-TGQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRL 102

Query: 59  DRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCE 118
             P +    +  + LP +     G   +A+GWG+++    L PK LQ VD+ +I N  C 
Sbjct: 103 SEPAELTDAVKVMDLPTQEPAL-GTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCA 161

Query: 119 RWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQ 177
           + H        +   M+CAG   G K +C GDSGGPL+        L GI S G   CA 
Sbjct: 162 QVHPQK-----VTKFMLCAGRWTGGKSTCSGDSGGPLVCN----GVLQGITSWGSEPCAL 212

Query: 178 QGQPGIYHRVAYTVDWISYIM 198
             +P +Y +V +   WI   +
Sbjct: 213 PERPSLYTKVVHYRKWIKDTI 233

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score =  173 bits (442), Expect = 4e-55
 Identities = 58/197 (29%), Positives = 76/197 (38%), Gaps = 17/197 (8%)

Query: 4   TASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 63
              A  V V LG + I    E     T       VH    +       D+AV+RL  PV 
Sbjct: 43  MDGAGFVDVVLGAHNIRED-EA-TQVTIQSTDFTVHE--NYNSFVISNDIAVIRLPVPVT 98

Query: 64  YMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKS 123
               IA + LP      +G      GWG     +      L+ VDVPI+ N  C+  +  
Sbjct: 99  LTAAIATVGLPSTD-VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGI 157

Query: 124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPG 182
                 + D  +C    GG K +C GDSGGPL           GI S G +   + G P 
Sbjct: 158 ------VTDGNICIDSTGG-KGTCNGDSGGPLN----YNGLTYGITSFGAAAGCEAGYPD 206

Query: 183 IYHRVAYTVDWISYIMN 199
            + RV Y +DWI     
Sbjct: 207 AFTRVTYFLDWIQTQTG 223

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score =  173 bits (441), Expect = 5e-55
 Identities = 54/193 (27%), Positives = 77/193 (39%), Gaps = 17/193 (8%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
             + VTLG + I    E        VR+   HP   +  +    D+ +L+L R       
Sbjct: 48  SSINVTLGAHNI-MERER-TQQVIPVRRPIPHP--DYNDETLANDIMLLKLTRKADITDK 103

Query: 68  IAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           ++PI LP    +   G     AGWG L          LQ VD+ +    +C    K+   
Sbjct: 104 VSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPS-TDKLQEVDLEVQSEEKCIARFKNY-- 160

Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
              I    +CAG     K+S  GDSGGPL+          GIVS G +      P +Y R
Sbjct: 161 ---IPFTQICAGDPSKRKNSFSGDSGGPLVCN----GVAQGIVSYGRNDGT--TPDVYTR 211

Query: 187 VAYTVDWISYIMN 199
           ++  + WI   M 
Sbjct: 212 ISSFLSWIHSTMR 224

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score =  181 bits (460), Expect = 6e-55
 Identities = 44/239 (18%), Positives = 81/239 (33%), Gaps = 51/239 (21%)

Query: 2   TNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF-------KFTPQADRYDVA 54
           T       ++V++G                 +  +  HP +          P+   YDVA
Sbjct: 262 TVDDKEHSIKVSVGGEKR----------DLEIEVVLFHPNYNINGKKEAGIPEFYDYDVA 311

Query: 55  VLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGWAAGWGALQAGS-----------RLRPK 102
           +++L   ++Y   I PICLP         +          +                  K
Sbjct: 312 LIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEK 371

Query: 103 TLQAVDVPIIDN---RQCERWHK-------SNGINVVIYDEMMCAGYRGGA--KDSCQGD 150
            L   +V I +      CER  +          I+ V+    +C G        ++C+GD
Sbjct: 372 KLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGD 431

Query: 151 SGGPLMMERTGRWFLIGIVSAGYS--CAQQGQ--------PGIYHRVAYTVDWISYIMN 199
           SGGPL++ +  R+  +G++S G    C  Q +           +  +   + W+   + 
Sbjct: 432 SGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ 490

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score =  173 bits (441), Expect = 6e-55
 Identities = 53/192 (27%), Positives = 79/192 (41%), Gaps = 16/192 (8%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
             + VTLG + I    EP       V++   HP   + P+    D+ +L+L+R  +    
Sbjct: 48  SSINVTLGAHNI-KEQEP-TQQFIPVKRPIPHP--AYNPKNFSNDIMLLQLERKAKRTRA 103

Query: 68  IAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           + P+ LP        GQ    AGWG      +    TLQ V + + ++R+CE   +    
Sbjct: 104 VQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKH-SHTLQEVKMTVQEDRKCESDLRHY-- 160

Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
                   +C G     K S +GDSGGPL+          GIVS G +      P    +
Sbjct: 161 --YDSTIELCVGDPEIKKTSFKGDSGGPLV----CNKVAQGIVSYGRNNGM--PPRACTK 212

Query: 187 VAYTVDWISYIM 198
           V+  V WI   M
Sbjct: 213 VSSFVHWIKKTM 224

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score =  173 bits (441), Expect = 7e-55
 Identities = 62/201 (30%), Positives = 85/201 (42%), Gaps = 22/201 (10%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFK---------FTPQADRYDVAVLRL 58
            Q +V LG   +    EP  A    V K   HP F                  D+ +LRL
Sbjct: 45  DQYEVWLGKNKL-FQEEP-SAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRL 102

Query: 59  DRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCE 118
            +P      + PI LP K E   G    A+GWG++      +P  LQ V + ++ N  C 
Sbjct: 103 SKPADITDVVKPIALPTK-EPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCA 161

Query: 119 RWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQ 177
           + +        + D M+CAG  GG KD+C+ DSGGPL+ +      L G  S G   C +
Sbjct: 162 KVYLQK-----VTDVMLCAGEMGGGKDTCRDDSGGPLICD----GILQGTTSYGPVPCGK 212

Query: 178 QGQPGIYHRVAYTVDWISYIM 198
            G P IY  +     WI   M
Sbjct: 213 PGVPAIYTNLIKFNSWIKDTM 233

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score =  173 bits (441), Expect = 7e-55
 Identities = 61/202 (30%), Positives = 88/202 (43%), Gaps = 22/202 (10%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF---------KFTPQADRYDVAVLRL 58
              QV LG   +    EP  A    VR+   HP +         +        D+ +L L
Sbjct: 43  NNYQVLLGRNNL-FKDEP-FAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHL 100

Query: 59  DRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCE 118
             P      +  I LP K E  +G    A+GWG+      +    LQ V++ ++ N +C 
Sbjct: 101 SEPADITGGVKVIDLPTK-EPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCI 159

Query: 119 RWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQ 177
             +K N     + D M+CAG   G KD+C GDSGGPL+ +      L GI S G + CA+
Sbjct: 160 ETYKDN-----VTDVMLCAGEMEGGKDTCAGDSGGPLICD----GVLQGITSGGATPCAK 210

Query: 178 QGQPGIYHRVAYTVDWISYIMN 199
              P IY ++     WI  +M 
Sbjct: 211 PKTPAIYAKLIKFTSWIKKVMK 232

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score =  173 bits (440), Expect = 8e-55
 Identities = 52/194 (26%), Positives = 86/194 (44%), Gaps = 20/194 (10%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
           R++ V LG + +    E        V K  +H    +    + +D+ +L+L++ V+  P 
Sbjct: 49  REITVILGAHDV-RKRES-TQQKIKVEKQIIHE--SYNSVPNLHDIMLLKLEKKVELTPA 104

Query: 68  IAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCER-WHKSNG 125
           +  + LP   +    G   WAAGWG           TL+ V++ I+D + C    +    
Sbjct: 105 VNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPT-SYTLREVELRIMDEKACVDYRYY--- 160

Query: 126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYH 185
                Y   +C G     + +  GDSGGPL+          GIVS G+  A+   P I+ 
Sbjct: 161 ----EYKFQVCVGSPTTLRAAFMGDSGGPLLCA----GVAHGIVSYGHPDAK--PPAIFT 210

Query: 186 RVAYTVDWISYIMN 199
           RV+  V WI+ ++N
Sbjct: 211 RVSTYVPWINAVIN 224

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score =  171 bits (437), Expect = 2e-54
 Identities = 46/196 (23%), Positives = 71/196 (36%), Gaps = 24/196 (12%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           +     V LG Y +    E   +               + PQ +  D+ +L+LDR     
Sbjct: 47  NPGVSTVVLGAYDL-RRRER-QSRQTFSISSMSEN--GYDPQQNLNDLMLLQLDREANLT 102

Query: 66  PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
             +  + LP +      G     AGWG+ ++G RL  +  + V+V +    QC       
Sbjct: 103 SSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRL-SRFPRFVNVTVTPEDQCR------ 155

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY 184
                     +C G        C GD G PL+ E        G+ S       +G P  +
Sbjct: 156 -------PNNVCTGVLTRRGGICNGDGGTPLVCE----GLAHGVASFSLGPCGRG-PDFF 203

Query: 185 HRVAYTVDWISYIMNT 200
            RVA   DWI  ++N 
Sbjct: 204 TRVALFRDWIDGVLNN 219

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score =  171 bits (436), Expect = 3e-54
 Identities = 55/192 (28%), Positives = 80/192 (41%), Gaps = 17/192 (8%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
             +QV LG + +    E        V +  +HP   +   +   D+ +LRL RP +    
Sbjct: 45  PNLQVFLGKHNLRQ-RES-SQEQSSVVRAVIHP--DYDAASHDQDIMLLRLARPAKLSEL 100

Query: 68  IAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGIN 127
           I P+ L               GWG    G    P T+Q   + ++   +CE  +      
Sbjct: 101 IQPLPLERD-CSANTTSCHILGWGKTADGDF--PDTIQCAYIHLVSREECEHAYPGQ--- 154

Query: 128 VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHR 186
             I   M+CAG     KDSCQGDSGGPL+        L G+VS G   C  + +PG+Y  
Sbjct: 155 --ITQNMLCAGDEKYGKDSCQGDSGGPLVCG----DHLRGLVSWGNIPCGSKEKPGVYTN 208

Query: 187 VAYTVDWISYIM 198
           V    +WI   +
Sbjct: 209 VCRYTNWIQKTI 220

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score =  170 bits (433), Expect = 9e-54
 Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 16/193 (8%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
           R + VTLG + I  A E        V K   HP   + P     D+ +L+L R  +    
Sbjct: 49  RSMTVTLGAHNI-KAKEE-TQQIIPVAKAIPHP--DYNPDDRSNDIMLLKLVRNAKRTRA 104

Query: 68  IAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           + P+ LP +      G   + AGWG +       PKTL  V + +  ++ CE   +S+  
Sbjct: 105 VRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEF-PKTLHEVKLTVQKDQVCESQFQSS-- 161

Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
                   +C G       S + DSGGPL+ +        GIVS G +      P ++ R
Sbjct: 162 --YNRANEICVGDSKIKGASFEEDSGGPLVCK----RAAAGIVSYGQTDGS--APQVFTR 213

Query: 187 VAYTVDWISYIMN 199
           V   V WI   M 
Sbjct: 214 VLSFVSWIKKTMK 226

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score =  170 bits (433), Expect = 1e-53
 Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 25/206 (12%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF---------KFTPQADRYDVAVLRL 58
              Q+ LG + +    E   A    V +   HP F         +   +   +D+ +LRL
Sbjct: 45  DNYQLWLGRHNL-FDDEN-TAQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRL 102

Query: 59  DRPVQYM-PHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQC 117
             P   +   +  + LP + E  +G    A+GWG+++  +   P  LQ VD+ I+ N +C
Sbjct: 103 TEPADTITDAVKVVELPTE-EPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDEC 161

Query: 118 ERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CA 176
           ++ H        + D M+C G+  G KD+C GDSGGPLM +      L G+ S GY  C 
Sbjct: 162 KKAHVQK-----VTDFMLCVGHLEGGKDTCVGDSGGPLMCD----GVLQGVTSWGYVPCG 212

Query: 177 QQGQPGIYHRVAYTVDWISYIM--NT 200
              +P +  RV   V WI   +  N+
Sbjct: 213 TPNKPSVAVRVLSYVKWIEDTIAENS 238

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score =  168 bits (429), Expect = 4e-53
 Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 18/193 (9%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPH 67
           R + VTLG + I +  E        V K   HP  K+      +D+ +L+L         
Sbjct: 49  RSITVTLGAHNI-TEEED-TWQKLEVIKQFRHP--KYNTSTLHHDIMLLKLKEKASLTLA 104

Query: 68  IAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI 126
           +  +  P +      G+    AGWG           TLQ V + ++D + C  +      
Sbjct: 105 VGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPG-SDTLQEVKLRLMDPQACSHFRD---- 159

Query: 127 NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR 186
               ++  +C G     K + +GDSGGPL+          GIVS G S A+   P ++ R
Sbjct: 160 --FDHNLQLCVGNPRKTKSAFKGDSGGPLLCA----GVAQGIVSYGRSDAK--PPAVFTR 211

Query: 187 VAYTVDWISYIMN 199
           +++   WI+ I+ 
Sbjct: 212 ISHYRPWINQILQ 224

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score =  168 bits (428), Expect = 8e-53
 Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 22/201 (10%)

Query: 8   RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQAD---------RYDVAVLRL 58
              Q+ LG + + S  E   A    V    + P F  +              +D+ +LRL
Sbjct: 45  DDYQIWLGRHNL-SKDED-TAQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRL 102

Query: 59  DRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCE 118
            +P +    +  + LP +     G   + +GWG +   +     TLQ V++ +  N +C 
Sbjct: 103 AQPARITDAVKILDLPTQEPKL-GSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCA 161

Query: 119 RWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQ 177
           R +        + + ++CA +R  +   C GDSGG L+ +        GI S GYS CA 
Sbjct: 162 RAYPEK-----MTEFVLCATHRDDSGSICLGDSGGALICD----GVFQGITSWGYSECAD 212

Query: 178 QGQPGIYHRVAYTVDWISYIM 198
                ++ +V     WI   +
Sbjct: 213 FNDNFVFTKVMPHKKWIKETI 233

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score =  166 bits (424), Expect = 2e-52
 Identities = 56/196 (28%), Positives = 82/196 (41%), Gaps = 25/196 (12%)

Query: 4   TASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ 63
              A  V V LG  V                +I  H    F P     DVA++++   V+
Sbjct: 47  VHDAVSVVVYLGSAVQYE-----GEAVVNSERIISHS--MFNPDTYLNDVALIKI-PHVE 98

Query: 64  YMPHIAPICLPEKGE---DFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW 120
           Y  +I PI LP   E    F   +   +GWG     +      LQ     +IDN +C + 
Sbjct: 99  YTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDTV----ILQYTYNLVIDNDRCAQE 154

Query: 121 HKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS--AGYSCAQQ 178
           +       +I +  +C     G K  C GDSGGP ++    +  LIG+VS  +G  C + 
Sbjct: 155 YPPG----IIVESTICGDTSDG-KSPCFGDSGGPFVLS--DKNLLIGVVSFVSGAGC-ES 206

Query: 179 GQPGIYHRVAYTVDWI 194
           G+P  + RV   +DWI
Sbjct: 207 GKPVGFSRVTSYMDWI 222

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score =  166 bits (422), Expect = 3e-52
 Identities = 51/195 (26%), Positives = 77/195 (39%), Gaps = 26/195 (13%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           + R V+V LG + + S  EP     F V++I       + P     D+ +L+L+      
Sbjct: 47  NVRAVRVVLGAHNL-SRREP-TRQVFAVQRI-FEN--GYDPVNLLNDIVILQLNGSATIN 101

Query: 66  PHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
            ++    LP +G     G    A GWG L     +    LQ ++V ++ +  C R     
Sbjct: 102 ANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGI-ASVLQELNVTVVTS-LCRR----- 154

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGI 183
                     +C   RG     C GDSG PL+        + GI S     CA    P  
Sbjct: 155 --------SNVCTLVRGRQAGVCFGDSGSPLVCN----GLIHGIASFVRGGCASGLYPDA 202

Query: 184 YHRVAYTVDWISYIM 198
           +  VA  V+WI  I+
Sbjct: 203 FAPVAQFVNWIDSII 217

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score =  173 bits (440), Expect = 4e-52
 Identities = 46/240 (19%), Positives = 80/240 (33%), Gaps = 51/240 (21%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF-------KFTPQADRYDVAV 55
           +       +V +GD       E      F + K  + P F       +   +    D+A+
Sbjct: 268 DGNDHSLWRVNVGDPKSQWGKE------FLIEKAVISPGFDVFAKKNQGILEFYGDDIAL 321

Query: 56  LRLDRPVQYMPHIAPICLPEKGEDFL------GQFGWAAGWGALQAGSRL-RPKTLQAVD 108
           L+L + V+   H  PICLP   E  L      G          L   S       L    
Sbjct: 322 LKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSK 381

Query: 109 VPI-----IDNRQCERWHKSN--------GINVVIYDEMMCAGYRGGAKDSCQGDSGGPL 155
           + I     ++   C                +  V+ D+ +C+G +   +  C+G+SGG +
Sbjct: 382 LNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGTQED-ESPCKGESGGAV 440

Query: 156 MMERTGRWFLIGIVSAGYS-----CAQQGQ------------PGIYHRVAYTVDWISYIM 198
            +ER  R+F +G+VS G        A +                 +  +     W+   +
Sbjct: 441 FLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHL 500

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score =  161 bits (410), Expect = 3e-51
 Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 13/152 (8%)

Query: 51  YDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAG--SRLRPKTLQAVD 108
           +D+ +LRL  P +    +  + LP +  +  G    A+GWG+++ G      P  +Q V 
Sbjct: 8   HDLMLLRLQSPAKITDAVKVLELPTQEPEL-GSTCEASGWGSIEPGPDDFEFPDEIQCVQ 66

Query: 109 VPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGI 168
           + ++ N  C   H        + + M+CAGY  G KD+C GDSGGPL+    G W   GI
Sbjct: 67  LTLLQNTFCADAHPDK-----VTESMLCAGYLPGGKDTCMGDSGGPLICN--GMW--QGI 117

Query: 169 VSAGY-SCAQQGQPGIYHRVAYTVDWISYIMN 199
            S G+  C    +P IY ++ + +DWI   + 
Sbjct: 118 TSWGHTPCGSANKPSIYTKLIFYLDWIDDTIT 149

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score =  162 bits (412), Expect = 1e-50
 Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 26/198 (13%)

Query: 3   NTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV 62
                R V V LG + +    EP     F V ++ ++ Y          D+ +++L  P 
Sbjct: 47  RDIPQRLVNVVLGAHNV-RTQEP-TQQHFSVAQVFLNNYDAEN---KLNDILLIQLSSPA 101

Query: 63  QYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWH 121
                +A + LP++ +    G    A GWG + A      + LQ ++V ++         
Sbjct: 102 NLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPP-AQVLQELNVTVVTF------- 153

Query: 122 KSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQ 180
                        +C          C GDSGGPL+ +      + GI S   + CA +  
Sbjct: 154 -------FCRPHNICTFVPRRKAGICFGDSGGPLICD----GIIQGIDSFVIWGCATRLF 202

Query: 181 PGIYHRVAYTVDWISYIM 198
           P  + RVA  VDWI   +
Sbjct: 203 PDFFTRVALYVDWIRSTL 220

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score =  172 bits (436), Expect = 3e-50
 Identities = 46/240 (19%), Positives = 82/240 (34%), Gaps = 51/240 (21%)

Query: 1   MTNTASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF-------KFTPQADRYDV 53
            T       ++V++G                 +  +  HP +          P+   YDV
Sbjct: 503 FTVDDKEHSIKVSVGGEKR----------DLEIEVVLFHPNYNINGKKEAGIPEFYDYDV 552

Query: 54  AVLRLDRPVQYMPHIAPICLPEKGEDFL------GQFGWAAGWGALQAG------SRLRP 101
           A+++L   ++Y   I PICLP                        L A            
Sbjct: 553 ALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEE 612

Query: 102 KTLQAVDVPIIDNRQ---CERWHK-------SNGINVVIYDEMMCAGYRGGA--KDSCQG 149
           K L   +V I +  +   CER  +          I+ V+    +C G        ++C+G
Sbjct: 613 KKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRG 672

Query: 150 DSGGPLMMERTGRWFLIGIVSAGYS--CAQQGQ--------PGIYHRVAYTVDWISYIMN 199
           DSGGPL++ +  R+  +G++S G    C  Q +           +  +   + W+   + 
Sbjct: 673 DSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ 732

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score =  135 bits (343), Expect = 8e-42
 Identities = 37/98 (37%), Positives = 53/98 (54%), Gaps = 7/98 (7%)

Query: 101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT 160
           P  LQ   +P++ N  C+++  +      I D M+CAG       SC GDSGGPL+ ++ 
Sbjct: 4   PDRLQQASLPLLSNTNCKKYWGTK-----IKDAMICAGA--SGVSSCMGDSGGPLVCKKN 56

Query: 161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           G W L+GIVS G S      PG+Y RV   V+W+   +
Sbjct: 57  GAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTL 94

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score = 71.1 bits (175), Expect = 3e-16
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 11  QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAP 70
            V  G++   S+ E        + K+  +   K+       D+ +L+L     +   ++ 
Sbjct: 50  VVVAGEFDQGSSSEK--IQKLKIAKVFKNS--KYNSLTINNDITLLKLSTAASFSQTVSA 105

Query: 71  ICLPEKGEDFL-GQFGWAAGWGALQ 94
           +CLP   +DF  G      GWG  +
Sbjct: 106 VCLPSASDDFAAGTTCVTTGWGLTR 130

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 55.4 bits (133), Expect = 7e-10
 Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 33/174 (18%)

Query: 27  PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW 86
              +  + +  V   +     A +YD AV++ D  +     +    + +   +  G    
Sbjct: 73  VNGSANMTEFYVPSGY-INTGASQYDFAVIKTDTNIGN--TVGYRSIRQ-VTNLTGTTIK 128

Query: 87  AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDS 146
            +G+   +                 +   +          N+  Y             D+
Sbjct: 129 ISGYPGDKMR-----------STGKVSQWEMSGSVTREDTNLAYYT-----------IDT 166

Query: 147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV-AYTVDWISYIMN 199
             G+SG  ++        ++G+ +AGYS    G      +  A  V++I+Y   
Sbjct: 167 FSGNSGSAML---DQNQQIVGVHNAGYSN---GTINGGPKATAAFVEFINYAKA 214

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica} Length = 218

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 20/150 (13%), Positives = 39/150 (26%), Gaps = 22/150 (14%)

Query: 27  PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW 86
               +   ++     +        +D A   L+                           
Sbjct: 67  EHGVWAAEELVTSAEWA-NRGDFEHDYAFAVLETKGG------------------TTVQQ 107

Query: 87  AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDS 146
             G  +  A ++ R +   A   P       +  H  +G      ++ M +  +G   + 
Sbjct: 108 QVGTASPIAFNQPRGQYYSAYGYPAAAPFNGQELHSCHGT---ATNDPMGSSTQGIPCNM 164

Query: 147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCA 176
             G SGGP  +            S GY+  
Sbjct: 165 TGGSSGGPWFLGNGTGGAQNSTNSYGYTFL 194

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	203
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	100.0
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	100.0
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	100.0
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	100.0
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	100.0
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	100.0
1aut_C	250	Activated protein C; serine proteinase, plasma cal	100.0
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	100.0
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	100.0
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	100.0
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	100.0
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	100.0
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	100.0
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	100.0
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	100.0
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	100.0
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	100.0
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	100.0
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	100.0
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	100.0
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	100.0
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	100.0
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	100.0
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	100.0
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	100.0
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	100.0
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	100.0
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	100.0
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	100.0
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	100.0
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	100.0
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	100.0
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	100.0
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	100.0
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	100.0
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	100.0
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	100.0
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	100.0
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	100.0
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	100.0
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	100.0
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	100.0
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	100.0
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	100.0
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	100.0
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	100.0
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	100.0
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	100.0
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	100.0
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	100.0
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	100.0
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	100.0
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	100.0
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	100.0
1md8_A	329	C1R complement serine protease; innate immunity, a	100.0
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	100.0
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	100.0
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	100.0
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	100.0
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	100.0
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	100.0
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	100.0
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	100.0
2aiq_A	231	Protein C activator; snake venom serine proteinase	100.0
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	100.0
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	100.0
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	100.0
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	100.0
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	100.0
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	100.0
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	100.0
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	100.0
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	100.0
1gpz_A	399	Complement C1R component; hydrolase, activation, i	100.0
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	100.0
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	100.0
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	100.0
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	100.0
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	100.0
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	100.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	100.0
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	100.0
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	100.0
1elv_A	333	Complement C1S component; trypsin-like serin prote	100.0
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	100.0
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	100.0
1a7s_A	225	Heparin binding protein; serine protease homolog,	100.0
2xrc_A	565	Human complement factor I; immune system, hydrolas	100.0
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	100.0
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	100.0
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	100.0
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	100.0
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.98
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	99.95
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.93
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.84
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	99.83
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.79
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.78
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.75
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	99.75
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.74
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.73
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.73
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.57
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	99.53
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	99.52
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.18
1hpg_A	187	Glutamic acid specific protease; serine protease,	99.15
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	99.13
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	99.1
3k6y_A	237	Serine protease, possible membrane-associated seri	99.05
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	99.03
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	99.03
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.0
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.98
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.85
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	98.79
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.79
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	98.7
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	98.48
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.48
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.27
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.25
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	97.14
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.12
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	96.66
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.48
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	94.47
2w5e_A	163	Putative serine protease; coiled coil, transmembra	94.23
3syj_A	1011	Adhesion and penetration protein autotransporter;	90.47
1mbm_A	198	NSP4 proteinase, chymotrypsin-like serine protease	88.13
3mmg_A	241	Nuclear inclusion protein A; 3C-type protease, TEV	86.31
3h09_A	989	IGA1 protease, immunoglobulin A1 protease; serine	85.78
1zyo_A	191	Serine protease; beta-barrel, glutamyl endopeptida	84.87
3sze_A	968	Serine protease ESPP; parallel beta-helix, hydrola	83.55
1lvm_A	229	Catalytic domain of the nuclear inclusion protein	83.06
4ash_A	185	NS6 protease; hydrolase, trypsin-like, calicivirus	82.3

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=100.00  E-value=9e-42  Score=263.16  Aligned_cols=183  Identities=37%  Similarity=0.677  Sum_probs=158.9

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCcee
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFG   85 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~   85 (203)
                      ++..+.|++|.++......  ..+.+.|.++++||+|+  .....||||||+|++|+.|+++++|||||.... ..+..|
T Consensus        54 ~~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~-~~~~~~  128 (237)
T 2f91_A           54 NPSGLQIVAGELDMSVNEG--SEQIITVSKIILHENFD--YNLLDNDISLLKLSGSLTFNDNVAPIALPEQGH-TATGDV  128 (237)
T ss_dssp             SCCSEEEEESCSBTTSCCS--CCEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTC-CCCSEE
T ss_pred             CcccEEEEECCeeccCCCC--ccEEEEEEEEEECCCCC--CCCCCCcEEEEEECCCcccCCceeeccCCCCCC-CCCCcE
Confidence            5678999999988765433  36899999999999997  457889999999999999999999999998764 468899


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFL  165 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~l  165 (203)
                      .++|||....+... +..|+...+++++.++|+..+...    .+.+.+||++....+...|.||+||||++..+++|+|
T Consensus       129 ~v~GwG~~~~~~~~-~~~L~~~~~~~~~~~~C~~~~~~~----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l  203 (237)
T 2f91_A          129 IVTGWGTTSEGGNT-PDVLQKVTVPLVSDEDCRADYGAD----EILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYL  203 (237)
T ss_dssp             EEEESCCSSTTCCC-CSBCEEEEEEEECHHHHHHHHCTT----TSCTTEEEECCTTCCCBCCTTCTTCEEEECTTSSCEE
T ss_pred             EEEECCcCCCCCCc-cceeeEEEEeEcCHHHhhhhhCCC----CcCCCeEEEecCCCCCCCCCCcCCCCeEEecCCCEEE
Confidence            99999987655433 678999999999999999876521    3678999998665567899999999999998899999


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhh
Q psy12782        166 IGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM  198 (203)
Q Consensus       166 vGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i  198 (203)
                      +||+||+..|+..+.|.+||||++|++||+++|
T Consensus       204 ~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~  236 (237)
T 2f91_A          204 AGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             EEEEEEESSSSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             EEEEEecCCCCCCCCCcEEEEHHHhHHHHHHhc
Confidence            999999999988888999999999999999976

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=100.00  E-value=1.2e-41  Score=262.48  Aligned_cols=187  Identities=33%  Similarity=0.653  Sum_probs=161.1

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCcee
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFG   85 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~   85 (203)
                      ++..+.|++|.++.......  .+.+.|.++++||+|+  ...+.||||||||++|+.|+++++|||||.......+..|
T Consensus        49 ~~~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~hp~y~--~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~  124 (238)
T 1ym0_A           49 APALVSLVVGEHDSSAASTV--RQTHDVDSIFVNENYD--PATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKS  124 (238)
T ss_dssp             CGGGEEEEESCSBTTSCCSS--CEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCSSSCCCCBCCCTTCCCTTCEE
T ss_pred             CCceEEEEEcccccCCCCCC--ceEEEEEEEEECCCCC--CCCCcccEEEEEeCCCccccCcccccCCCCCcCCCCCCce
Confidence            45789999999888765443  7899999999999997  4678899999999999999999999999987654468899


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCC--CCCCcCCCCCeeEEee-CCc
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGA--KDSCQGDSGGPLMMER-TGR  162 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~--~~~c~~d~G~pl~~~~-~~~  162 (203)
                      .++|||.........+..|+...+++++.+.|...+...    .+.+.+||++.....  ...|.||+||||+|.. +++
T Consensus       125 ~~~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~  200 (238)
T 1ym0_A          125 QCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSD----TIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGI  200 (238)
T ss_dssp             EEEESCCSSTTCCSCCSBCEEEEEEECCHHHHHHHCTTS----CCCTTEEEEECSSCSSSCBCCTTTTTCEEEEECTTCC
T ss_pred             EEEeecCCCCCCCcCCccceEEEEEeeCHHHHhHhhccc----ccCCCeEEecCCCCCCcCccCCCccCCeeEEECCCCC
Confidence            999999877655433678999999999999999876532    378999999865443  7899999999999987 789


Q ss_pred             EEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        163 WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       163 ~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |+|+||+||+..|+ .+.|.+||||+.|++||+++|+.|
T Consensus       201 ~~l~Gi~S~g~~C~-~~~p~vyt~v~~~~~WI~~~i~~n  238 (238)
T 1ym0_A          201 FSLVGIVSWGIGCA-SGYPGVYSRVGFHAGWITDTITNN  238 (238)
T ss_dssp             EEEEEEEEECSSSS-SSSCEEEEEHHHHHHHHHHHHHCC
T ss_pred             EEEEEEEeECCCCC-CCCCcEEEEHHHhHHHHHHHhcCC
Confidence            99999999999898 688999999999999999999864

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=100.00  E-value=2.3e-41  Score=260.31  Aligned_cols=187  Identities=35%  Similarity=0.683  Sum_probs=161.6

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      ..+..+.|++|........+. ..+.+.|.++++||+|+  ..+..||||||+|++|+.|+++++|+|||...... .+.
T Consensus        48 ~~~~~~~v~~g~~~~~~~~~~-~~~~~~v~~i~~hp~y~--~~~~~~DiALl~L~~~~~~~~~v~picLp~~~~~~~~~~  124 (235)
T 4dgj_A           48 LEPSKWTAILGLHMKSNLTSP-QTVPRLIDEIVINPHYN--RRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGR  124 (235)
T ss_dssp             SSGGGEEEEESCCBTTCCSCT-TCEEEEEEEEEECTTCB--TTTTBTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTC
T ss_pred             CCCccEEEEEeeecccccCCC-ceeEEeEEEEEECCCCC--CCCCCCeEEEEEECCccccCCcccccCCCCcccCCCCCC
Confidence            456789999999876654332 46788899999999997  46788999999999999999999999999876543 688


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcE
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW  163 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~  163 (203)
                      .|.++|||........ +..|+...+.+++.+.|...+...    .+.+.+||++....+...|.||+||||+|..+++|
T Consensus       125 ~~~v~GwG~~~~~~~~-~~~L~~~~~~~~~~~~C~~~~~~~----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~  199 (235)
T 4dgj_A          125 NCSIAGWGTVVYQGTT-ADILQEADVPLLSNERCQQQMPEY----NITENMICAGYEEGGIDSCQGDSGGPLMCQENNRW  199 (235)
T ss_dssp             EEEEEESSBSSTTCCB-CSBCEEEEEEEECHHHHHHHCTTS----CCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEE
T ss_pred             EEEEEecccCCCCCcc-chhheEeEeeecCHHHhhhhccCc----cCCCCeEeecCCCCCCccCCCCCCCeEEEEECCcE
Confidence            9999999987655433 678999999999999999877543    47899999987666678999999999999999999


Q ss_pred             EEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        164 FLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       164 ~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      +|+||+||+..|+..+.|.+||||+.|++||+++|+
T Consensus       200 ~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~~i~  235 (235)
T 4dgj_A          200 FLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFLH  235 (235)
T ss_dssp             EEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             EEEEEEEEcCCCCCCCCCEEEeeHHHHHHHHHHHhC
Confidence            999999999999988899999999999999999874

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=100.00  E-value=2.4e-41  Score=262.05  Aligned_cols=183  Identities=30%  Similarity=0.632  Sum_probs=158.0

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGW   86 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~   86 (203)
                      ..+.|++|.++.....+.  .+.+.|.++++||+|+  ..+..||||||+|++|+.|++.++|||||...... .+..|+
T Consensus        62 ~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~hp~y~--~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~  137 (245)
T 1t8o_A           62 TSDVVVAGEFDQGSSSEK--IQKLKIAKVFKNSKYN--SLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCV  137 (245)
T ss_dssp             TTSEEEESCSBTTCSSSC--CEEEEEEEEEECTTCC--TTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEE
T ss_pred             CCcEEEEeeeecCCCCCC--cEEEEEEEEEeCCCCC--CCCCCCCEEEEEECCCCcCCCceeeeECCCCccCCCCCCEEE
Confidence            457899999887765443  7899999999999997  46788999999999999999999999999876433 688999


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ++|||.........+..|+...+++++.++|...+..     .+.+.+||++  ..+...|.||+||||++..+++|+|+
T Consensus       138 v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~--~~~~~~C~GDSGgPL~~~~~~~~~l~  210 (245)
T 1t8o_A          138 TTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYWGT-----KIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAWTLV  210 (245)
T ss_dssp             EEESCCSCC--CCCCSBCEEEEEEEECHHHHHHHHGG-----GCCTTEEEEE--CSSCBCCTTCTTCEEEEEETTEEEEE
T ss_pred             EEEeCCCCCCCCCCcchheEEEEeeEcchhhhHhhcC-----cCCCceEEcc--CCCCccCcccCcCCEEEEECCEEEEE
Confidence            9999987755433367899999999999999987764     3789999998  34578999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        167 GIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       167 Gv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      ||+||+..|+..+.|.+||||+.|++||+++|+.+
T Consensus       211 GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~~n  245 (245)
T 1t8o_A          211 GIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAAN  245 (245)
T ss_dssp             EEEEECCTTCCTTSEEEEEEGGGTHHHHHHHHHTC
T ss_pred             EEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHccC
Confidence            99999999988888999999999999999999753

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=100.00  E-value=8.5e-42  Score=263.46  Aligned_cols=186  Identities=37%  Similarity=0.709  Sum_probs=160.2

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC-ccCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED-FLGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~-~~~~~   84 (203)
                      .+..+.|++|.++.....+.  .+.+.|.++++||+|+  .....||||||||++|+.|++.++|+|||..... ..+..
T Consensus        51 ~~~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~  126 (238)
T 3bg8_A           51 SPKILRVYSGILNQSEIKED--TSFFGVQEIIIHDQYK--MAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTD  126 (238)
T ss_dssp             CGGGEEEECSCSBGGGCCTT--SCCEEEEEEEECTTCC--CGGGSCCCEEEEESSCCCCBTTBCCCBCCCGGGGSSCCCC
T ss_pred             CCceEEEEEeeccCCcCCCC--ceEEeeEEEEECCCCC--CCCCCCcEEEEEECCccccCCCcccCCCCCCccCcCCCCe
Confidence            35679999999988765443  7889999999999997  4567899999999999999999999999986543 35788


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |+++|||....... .+..|+...+++++.++|+..+...    .+.+.+||++....+...|.||+||||+|..+++|+
T Consensus       127 ~~v~GwG~~~~~~~-~~~~L~~~~~~~~~~~~C~~~~~~~----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~  201 (238)
T 3bg8_A          127 CWVTGWGYRKLRDK-IQNTLQKAKIPLVTNEECQKRYRGH----KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWH  201 (238)
T ss_dssp             EEEEESCCSSSSCC-CCSBCEEEECCEECHHHHHHHCTTS----CCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEE
T ss_pred             EEEEecCCCCCCCC-hhhhhcEeeEEEECHHHhhhhhcCC----CCCCCeEeecCCCCCCCcCCCCCCcceEEEECCeEE
Confidence            99999998765543 2678999999999999999876532    378999999866556789999999999999999999


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      |+||+||+..|+..+.|.+||||+.|++||+++|+.
T Consensus       202 l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  237 (238)
T 3bg8_A          202 LVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQA  237 (238)
T ss_dssp             EEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHSC
T ss_pred             EEEEEEECCCCCCCCCCcEEEeHHHHHHHHHHHHhc
Confidence            999999999998888899999999999999999864

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=100.00  E-value=1.9e-41  Score=261.95  Aligned_cols=187  Identities=32%  Similarity=0.667  Sum_probs=160.6

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC-ccCcee
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED-FLGQFG   85 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~-~~~~~~   85 (203)
                      +..+.|++|..+.......  .+.+.|.++++||+|+  .....||||||+|++|+.|+++++|||||..... ..+..|
T Consensus        52 ~~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~  127 (241)
T 2any_A           52 QDVWRIYSGILELSDITKD--TPFSQIKEIIIHQNYK--VSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNC  127 (241)
T ss_dssp             STTEEEECSCSBGGGCCTT--SCCBCEEEEEECTTCC--TTSSSSCCEEEEESSCCCCBTTBCCCCCCCSSCCSTTCSEE
T ss_pred             CccEEEEeeeeeccccccC--ceEEeeEEEEECCCCC--CCCCCCCeEEEEeCCcccCCCCcceeEcCCcccCCCCCCeE
Confidence            4678999999887765443  6788999999999997  4567899999999999999999999999987543 358899


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFL  165 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~l  165 (203)
                      +++|||....... .+..|+...+++++.+.|+..+...    .+.+.+||++....+...|.||+||||+|..+++|+|
T Consensus       128 ~v~GwG~~~~~~~-~~~~L~~~~~~~~~~~~C~~~~~~~----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l  202 (241)
T 2any_A          128 WVTGWGFSKEKGE-IQNILQKVNIPLVTNEECQKRYQDY----KITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRL  202 (241)
T ss_dssp             EEEESSCSSTTCC-CCSBCEEEEEEEECHHHHHTTSCTT----CSCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEE
T ss_pred             EEEecccCCCCCC-cCchhheeEeEEeCHHHhhhHhccC----CCCcCcEeecCCCCCCccCCCCCCCcEEEEECCEEEE
Confidence            9999998765543 2678999999999999999876532    3789999998665567899999999999998899999


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        166 IGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       166 vGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      +||+||+..|+..+.|.+||||++|++||+++|+...
T Consensus       203 ~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~~~~  239 (241)
T 2any_A          203 VGITSWGEGCARREQPGVYTKVAEYMDWILEKTQSSD  239 (241)
T ss_dssp             EEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHSCC-
T ss_pred             EEEEEecCCCCCCCCCeEEEEHHHhHHHHHHHhhccc
Confidence            9999999999887889999999999999999998764

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=100.00  E-value=1.9e-41  Score=263.36  Aligned_cols=187  Identities=29%  Similarity=0.657  Sum_probs=157.5

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCC-----Ccc
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE-----DFL   81 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~-----~~~   81 (203)
                      ...+.|++|.++....+..  .+.+.|.++++||+|+  ..+..||||||+|++|+.|+++++|||||....     ...
T Consensus        47 ~~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~  122 (250)
T 1aut_C           47 SKKLLVRLGEYDLRRWEKW--ELDLDIKEVFVHPNYS--KSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQA  122 (250)
T ss_dssp             CSCCEEEESCCBTTCCCTT--CEEEEEEEEEECTTCB--TTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTST
T ss_pred             CCceEEEEcccccCCCCCc--cEEEEEEEEEECCCCC--CCCCCCcEEEEEECCcccCCCceeeeEcCCCccccccccCC
Confidence            4568999999987765443  7899999999999997  467889999999999999999999999997532     135


Q ss_pred             CceeEEeecccccCCCCCC----ccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEE
Q psy12782         82 GQFGWAAGWGALQAGSRLR----PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM  157 (203)
Q Consensus        82 ~~~~~~~Gwg~~~~~~~~~----~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~  157 (203)
                      +..|.++|||.........    ...|+.+.+++++.++|...+..     .+.+.+||++......+.|.||+||||++
T Consensus       123 g~~~~v~GwG~~~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~-----~~~~~~~Cag~~~~~~~~C~GDSGGPL~~  197 (250)
T 1aut_C          123 GQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSN-----MVSENMLCAGILGDRQDACEGDSGGPMVA  197 (250)
T ss_dssp             TCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECHHHHHHHCSS-----CCCTTEEEECCTTCCCBCCTTCTTCEEEE
T ss_pred             CCEEEEEEeCCCCCCCccccccccceeeEEEEEEecHHHhhHHhcc-----CCCCCEEEeCCCCCCCCCCCCCCchheEE
Confidence            7899999999876543321    24799999999999999987653     37899999986555678999999999999


Q ss_pred             eeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        158 ERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       158 ~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      ..+++|+|+||+||+..|+..+.|.+||||+.|++||+++|+..+
T Consensus       198 ~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~~~  242 (250)
T 1aut_C          198 SFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRDKE  242 (250)
T ss_dssp             EETTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHHHC---
T ss_pred             EECCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhhccc
Confidence            988999999999999999887889999999999999999998653

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=100.00  E-value=1.1e-40  Score=257.43  Aligned_cols=185  Identities=36%  Similarity=0.653  Sum_probs=160.9

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      .+..+.|++|.++....... ..+.+.|.++++||+|+  ..++.||||||||++|+.|++.++|+|||...... .+..
T Consensus        54 ~~~~~~v~~G~~~~~~~~~~-~~~~~~v~~i~~hp~y~--~~~~~~DIALl~L~~~~~~~~~v~piclp~~~~~~~~~~~  130 (241)
T 3ncl_A           54 DPTQWTAFLGLHDQSQRSAP-GVQERRLKRIISHPFFN--DFTFDYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKA  130 (241)
T ss_dssp             CGGGEEEEESCSBTTCTTST-TCEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCE
T ss_pred             CCceEEEEEeccccccCCCC-CceEEEEEEEEECCCCC--CCCCCCcEEEEEECCCCcccCccCceEcCCcccCCCCCCE
Confidence            46789999999887764332 47899999999999997  56788999999999999999999999999876543 5889


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee-CCcE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-TGRW  163 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-~~~~  163 (203)
                      |+++|||....+... +..|+...+.+++.+.|...+..     .+++.++|++....+...|.||+||||+|.. +++|
T Consensus       131 ~~v~GwG~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~  204 (241)
T 3ncl_A          131 IWVTGWGHTQYGGTG-ALILQKGEIRVINQTTCENLLPQ-----QITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRI  204 (241)
T ss_dssp             EEEEESSBSSTTSCB-CSBCEEEEEEECCHHHHHHHSTT-----TCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCE
T ss_pred             EEEEEecccCCCCCc-CceeeEEeEEEECHHHhhhhccc-----CCCCCeEEeCCCCCCCccCCCcCCCCEEEEcCCCcE
Confidence            999999988765543 67899999999999999988764     3789999998766678899999999999864 7899


Q ss_pred             EEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        164 FLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       164 ~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      +|+||+||+..|+..+.|.+||+|+.|++||+++++
T Consensus       205 ~l~Gi~S~g~~c~~~~~p~vyt~v~~y~~WI~~~~~  240 (241)
T 3ncl_A          205 FQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             EEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHHHC
T ss_pred             EEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            999999999999988899999999999999999875

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=100.00  E-value=3.2e-41  Score=262.53  Aligned_cols=191  Identities=32%  Similarity=0.640  Sum_probs=161.7

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC----ccC
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED----FLG   82 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~----~~~   82 (203)
                      .+.+.|++|.++......  ..+.+.|.++++||+|+  .....||||||+|++|+.|+++++|||||.....    ..+
T Consensus        49 ~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~  124 (254)
T 2bz6_H           49 WRNLIAVLGEHDLSEHDG--DEQSRRVAQVIIPSTYV--PGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFV  124 (254)
T ss_dssp             GGGEEEEESCCBTTCCCS--CCEEEEEEEEEEETTCC--TTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGC
T ss_pred             cceEEEEECCcccCCCCC--CcEEEEEEEEEECCCCC--CCCCcCcEEEEEECCccccCCCccceECCCCccccccccCC
Confidence            456999999998876544  37899999999999997  4678899999999999999999999999976431    247


Q ss_pred             ceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCc
Q psy12782         83 QFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGR  162 (203)
Q Consensus        83 ~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~  162 (203)
                      ..|+++|||.....+.. +..|+...+.+++.++|...+........+.+.|||++......+.|.||+||||++..+++
T Consensus       125 ~~~~v~GwG~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~g~  203 (254)
T 2bz6_H          125 RFSLVSGWGQLLDRGAT-ALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGT  203 (254)
T ss_dssp             CEEEEEESCBSSTTSCB-CSBCEEEEEEEECHHHHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEETTE
T ss_pred             CcEEEEeCcccCCCCCC-ChhheeeeeeeecHHHHhhhhhccccCCccCCCEEeecCCCCCCccccccCCCceEEeECCE
Confidence            88999999987655432 67899999999999999987654222224789999998665567899999999999998899


Q ss_pred             EEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        163 WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       163 ~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      |+|+||+||+..|+..+.|.+||||+.|++||+++|+.+.
T Consensus       204 ~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~~~  243 (254)
T 2bz6_H          204 WYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSEP  243 (254)
T ss_dssp             EEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHTSCC
T ss_pred             EEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHHhccC
Confidence            9999999999999887889999999999999999998653

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=100.00  E-value=3.8e-41  Score=259.26  Aligned_cols=186  Identities=34%  Similarity=0.601  Sum_probs=159.2

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC---ccCc
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED---FLGQ   83 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~---~~~~   83 (203)
                      ...+.|++|.++......  ..+.+.|.++++||+|+.....+.||||||+|++|+.|+++++|+|||.....   ..+.
T Consensus        46 ~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~  123 (235)
T 2wph_S           46 GVKITVVAGEHNIEETEH--TEQKRNVIRIIPHHNFNAAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFG  123 (235)
T ss_dssp             TSCCEEEESCCBTTSCCS--CCEEEEEEEEEECTTTTSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHHTC
T ss_pred             CCCEEEEEcccccCCCCC--CcEEeeeEEEEeCCCCcccCCcCCCCEEEEEECCcCcCCCCccccCCCCCcccccccCCc
Confidence            346899999998776544  37889999999999997432578899999999999999999999999976532   1478


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcE
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW  163 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~  163 (203)
                      .|+++|||........ +..|+...+++++.+.|...+..     .+.+.+||++....+...|.||+||||++..+++|
T Consensus       124 ~~~v~GwG~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~  197 (235)
T 2wph_S          124 SGYVSGWGRVFHKGRS-ALVLQYLRVPLVDRATCLRSTKF-----TITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTS  197 (235)
T ss_dssp             EEEEEESSBSSTTSCB-CSBCEEEEEEEECHHHHHHTCSS-----CCCTTEEEESCTTCSCBCCTTCTTCEEEEEETTEE
T ss_pred             cEEEEeCCCccCCCCc-cchheEeeeeeeCHHHhcCcccC-----CCCCCEEEeCCCCCCCccCCCCCCCceEEeECCeE
Confidence            8999999987655433 67899999999999999886543     37899999986555678999999999999988999


Q ss_pred             EEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        164 FLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       164 ~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      +|+||+||+..|+..+.|.+||||+.|++||+++++.
T Consensus       198 ~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  234 (235)
T 2wph_S          198 FLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL  234 (235)
T ss_dssp             EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHCCC
T ss_pred             EEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHhc
Confidence            9999999999998888899999999999999999875

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=100.00  E-value=1.3e-40  Score=258.64  Aligned_cols=187  Identities=32%  Similarity=0.511  Sum_probs=157.9

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCC----cCCCCCccceecCCCCCCc-
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP----VQYMPHIAPICLPEKGEDF-   80 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~----~~~~~~i~picl~~~~~~~-   80 (203)
                      ++..+.|++|..+.....+.  .+.+.|.++++||+|+  ...+.||||||+|++|    +.|++.++|||||...... 
T Consensus        54 ~~~~~~V~~G~~~~~~~~~~--~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~~~  129 (252)
T 1rtf_B           54 PPHHLTVILGRTYRVVPGEE--EQKFEVEKYIVHKEFD--DDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLP  129 (252)
T ss_dssp             CGGGEEEEESCSBSSSCCTT--CEEEEEEEEEECTTCC--TTTCTTCCEEEEECCSSSCCSCCBTTBCCCBCCCTTCCCC
T ss_pred             CcccEEEEeCcccccCCCCc--ceEEEEEEEEeCCCCC--cCCCCCCEEEEEECCccccccccCCceeceeCCCccccCC
Confidence            45779999999887654443  7899999999999997  4678899999999999    8999999999999876433 


Q ss_pred             cCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCC------CCCCcCCCCCe
Q psy12782         81 LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGA------KDSCQGDSGGP  154 (203)
Q Consensus        81 ~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~------~~~c~~d~G~p  154 (203)
                      .+..|.++|||.........+..|+...+++++.+.|...+...   ..+.+.+||++....+      ...|.||+|||
T Consensus       130 ~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~---~~~~~~~~Ca~~~~~~~~~~~~~~~C~GDsGgP  206 (252)
T 1rtf_B          130 DWTECELSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLN---RTVTDNMLCAGDTRSGGPQANLHDACQGDSGGP  206 (252)
T ss_dssp             TTCEEEEEESCCSSTTCSSCCSBCEEEEEEECCGGGSSTTTTTT---CCCCTTEEEEECCC------CCCBCCTTCTTCE
T ss_pred             CCCEEEEEEcCCCCCCCccccchheEeeeEEecHHHhhhhhccC---CCCCCCEEEecCCCCCCccCCCCccccCCCcCc
Confidence            57899999999877654334678999999999999998754321   2378899999865433      68999999999


Q ss_pred             eEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        155 LMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       155 l~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      |+|..+++|+|+||+||+..|+..+.|.+||||+.|++||+++|+
T Consensus       207 L~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  251 (252)
T 1rtf_B          207 LVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNMR  251 (252)
T ss_dssp             EEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHCC
T ss_pred             eEEEeCCcEEEEEEEEEcCCCCCCCCCeEEEEHHHHHHHHHHhcC
Confidence            999988999999999999999887889999999999999999885

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=100.00  E-value=6.3e-41  Score=259.00  Aligned_cols=185  Identities=32%  Similarity=0.618  Sum_probs=157.8

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC----ccC
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED----FLG   82 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~----~~~   82 (203)
                      ...+.|++|..+......  ..+.+.|.++++||+|+  ...+.||||||+|++|+.|+++++|||||.....    ..+
T Consensus        47 ~~~~~V~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~  122 (241)
T 2jkh_A           47 AKRFKVRVGDRNTEQEEG--GEAVHEVEVVIKHNRFT--KETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQ  122 (241)
T ss_dssp             CSSCEEEESCSBTTCCCS--CCEEECEEEEEECTTCB--TTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTS
T ss_pred             CCcEEEEECCccCCCCCC--CcEEEEeEEEEeCCCCC--CCCCCCcEEEEEECCcccCCCCEeeeEcCCCCcccccccCC
Confidence            346899999988765444  37889999999999997  4678899999999999999999999999976421    247


Q ss_pred             ceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCc
Q psy12782         83 QFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGR  162 (203)
Q Consensus        83 ~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~  162 (203)
                      ..|.++|||........ +..|+...+.+++.+.|...+..     .+++.+||++........|.||+||||++..+++
T Consensus       123 ~~~~v~GwG~~~~~~~~-~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~  196 (241)
T 2jkh_A          123 KTGIVSGFGRTHEKGEQ-STRLKMLEVPYVDRNSCKLSSSF-----IITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDT  196 (241)
T ss_dssp             SEEEEEESCBSSTTSCB-CSBCEEEEEEEECHHHHHHHCSS-----CCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTE
T ss_pred             CeEEEEecCCCCCCCCc-CccccEeeeccccHHHhcccccC-----cCCCCeEEeeCCCCCCccCcCcCCCeeEEEECCE
Confidence            89999999987655432 67899999999999999876543     3789999998655567899999999999998899


Q ss_pred             EEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        163 WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       163 ~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |+|+||+||+..|+..+.|.+||||+.|++||+++|+..
T Consensus       197 ~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  235 (241)
T 2jkh_A          197 YFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKTR  235 (241)
T ss_dssp             EEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC--
T ss_pred             EEEEEEEEECCCCCCCCCceEEEEhHHHHHHHHHHhccc
Confidence            999999999999988788999999999999999999864

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=100.00  E-value=1.2e-40  Score=264.01  Aligned_cols=191  Identities=31%  Similarity=0.558  Sum_probs=158.3

Q ss_pred             CCceeEEEeeeeeecccCC---CCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC--c
Q psy12782          6 SARQVQVTLGDYVINSAVE---PLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED--F   80 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~---~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~--~   80 (203)
                      +...+.|++|..++.....   ..+.+.+.|.++++||+|+  ..+..||||||||++|+.|+++++|||||.....  .
T Consensus        54 ~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~V~~i~~Hp~y~--~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~  131 (290)
T 1fiw_A           54 KVTDWRLIFGAKEVEWGTNKPVKPPLQERYVEKIIIHEKYS--ASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPR  131 (290)
T ss_dssp             SGGGEEEEESCSBCCTTCCSCCCTTCEEEEEEEEEECTTCB--TTTTBTCCEEEEEESCCCCBTTBCCCBCCCTTCCSCC
T ss_pred             CCcceEEEecceEEeccCCCcCCCCceEEEEEEEEECCCCC--CCCCCCCEEEEEECCccccCCccccccCCCccccCcC
Confidence            3567899999988654221   1247889999999999997  4678899999999999999999999999976432  2


Q ss_pred             cCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee-
Q psy12782         81 LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-  159 (203)
Q Consensus        81 ~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-  159 (203)
                      .+..|+++|||.........+..|+.+.+.+++.+.|......   ...+.+.|||++....+.+.|+||+||||+|.. 
T Consensus       132 ~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~---~~~i~~~~iCag~~~~~~~~C~GDSGGPLv~~~~  208 (290)
T 1fiw_A          132 VPQTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWY---NGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDS  208 (290)
T ss_dssp             SSCEEEEEESCCSSTTCSSCCSBCEEEEEEEECHHHHTSTTTT---TTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECS
T ss_pred             CCCeEEEEEeccCCCCCCCCCceeeEEEEEEecHHHhcccccc---CCcCCCCEEEEecCCCCCeeCCCCCchheEEEEC
Confidence            4789999999987765433356799999999999999864221   113789999998665667999999999999986 


Q ss_pred             -CCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        160 -TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       160 -~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                       +++|+|+||+||+..|+..+.|.+||||++|++||+++|+.+
T Consensus       209 ~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~~  251 (290)
T 1fiw_A          209 AENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKIGST  251 (290)
T ss_dssp             SSSCEEEEEEEEECSSSSBTTBCEEEEESGGGHHHHHHHHCHH
T ss_pred             CCCCEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHhCcc
Confidence             689999999999999988788999999999999999998753

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=100.00  E-value=1.6e-40  Score=256.85  Aligned_cols=186  Identities=31%  Similarity=0.569  Sum_probs=156.0

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCC--CCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADR--YDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~--~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      +..+.|++|.++....+.  ..+.+.|.++++||+|+.  ....  ||||||||++|+.|++.++|+|||...... .+.
T Consensus        50 ~~~~~V~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~~--~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~  125 (241)
T 1bru_P           50 SRTYRVVLGRHSLSTNEP--GSLAVKVSKLVVHQDWNS--NQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNY  125 (241)
T ss_dssp             TSCEEEEESCSBSSSCCT--TCEEEEEEEEEECTTCCT--TCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTC
T ss_pred             CCceEEEEEcccccCCCC--ccEEEEEEEEEECCCCCC--CCCCCCCcEEEEEeCCCcccCCccCCcccCCCcCCCCCCC
Confidence            367899999998876544  378999999999999973  4445  999999999999999999999999876433 578


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee-CCc
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-TGR  162 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-~~~  162 (203)
                      .|.++|||....... .+..|+...+.+++.+.|...+..   ...+.+.|||++. ....+.|+||+||||+|.. +++
T Consensus       126 ~~~v~GwG~~~~~~~-~~~~L~~~~~~i~~~~~C~~~~~~---~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~~g~  200 (241)
T 1bru_P          126 VCYVTGWGRLQTNGA-SPDILQQGQLLVVDYATCSKPGWW---GSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQ  200 (241)
T ss_dssp             EEEEEESCCSSTTSC-CCSBCEEEEEEEECHHHHTSTTTT---GGGCCTTEEEECC-SSSSBCCTTCTTCEEEEECTTSC
T ss_pred             EEEEEEccccCCCCC-CCccceeCEEEEecHHHhCccccc---CCcCCCceEeecC-CCCCccCCCCCCCcEEEECCCCC
Confidence            999999998765543 367899999999999999875221   1247899999984 3457899999999999986 789


Q ss_pred             EEEEEEEEecC--CCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        163 WFLIGIVSAGY--SCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       163 ~~lvGv~s~~~--~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |+|+||+||+.  .|...+.|.+||||+.|++||+++|+.+
T Consensus       201 ~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i~~n  241 (241)
T 1bru_P          201 WQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIANN  241 (241)
T ss_dssp             EEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCCCCCCCCCcEEEEHHHhHHHHHHHHhcC
Confidence            99999999997  7887788999999999999999999764

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=100.00  E-value=6.3e-41  Score=265.54  Aligned_cols=191  Identities=31%  Similarity=0.646  Sum_probs=156.4

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC----c
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED----F   80 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~----~   80 (203)
                      ..+..+.|++|.++....+.. ..+.+.|.++++||+|+. ...+.||||||+|++|+.|+++++|||||.....    .
T Consensus        84 ~~~~~~~V~~G~~~~~~~~~~-~~~~~~v~~i~~Hp~y~~-~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~  161 (289)
T 2bdy_A           84 FTENDLLVRIGKHSRTRYERN-IEKISMLEKIYIHPRYNW-RENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQ  161 (289)
T ss_dssp             CCGGGEEEEESCCBSSSCCTT-TCEEEEEEEEEECTTCBT-TTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCC
T ss_pred             cCcccEEEEEccccccccCCC-cceeeeeEEEEECCCCCC-CCCCCCeEEEEEECCccccCCcccccCCCCccccccccC
Confidence            346779999999887654321 356788999999999973 3467899999999999999999999999976431    2


Q ss_pred             cCceeEEeecccccCCC-----CCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeC---CCCCCCcCCCC
Q psy12782         81 LGQFGWAAGWGALQAGS-----RLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRG---GAKDSCQGDSG  152 (203)
Q Consensus        81 ~~~~~~~~Gwg~~~~~~-----~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~---~~~~~c~~d~G  152 (203)
                      .+..|+++|||......     ...+..|+.+.+++++.+.|...+..     .+.+.|||++...   ...+.|+||+|
T Consensus       162 ~g~~~~v~GWG~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~-----~i~~~~iCag~~~~~~~~~~~C~GDSG  236 (289)
T 2bdy_A          162 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI-----RITDNMFCAGYKPDEGKRGDACEGDSG  236 (289)
T ss_dssp             TTCEEEEEESSCSSCC-------CCCSBCEEEEEEBCCHHHHHHTCSS-----CCCTTEEEECCCGGGCCCCBCCTTCTT
T ss_pred             CCCEEEEECCCcCCCccccCccccccccceEEEEEEECHHHhhccccC-----cCCCCEEeccCCCCCCCCCccCCCCCc
Confidence            57889999999876431     11156799999999999999986643     3789999997542   25689999999


Q ss_pred             CeeEEee--CCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        153 GPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       153 ~pl~~~~--~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      |||+|..  +++|+|+||+||+..|+..+.|++||||+.|++||+++|+..+
T Consensus       237 GPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~  288 (289)
T 2bdy_A          237 GPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG  288 (289)
T ss_dssp             CEEEEECTTTCCEEEEEEEEECSSSSCTTCCEEEEETGGGHHHHHHHHHC--
T ss_pred             cceEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHhcC
Confidence            9999987  7899999999999999988889999999999999999998754

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=100.00  E-value=1.1e-40  Score=274.00  Aligned_cols=192  Identities=31%  Similarity=0.617  Sum_probs=162.1

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeE
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW   86 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~   86 (203)
                      ...+.|++|+++.....+..+.+.+.|.++++||+|+  ..++.||||||+|++|+.|+++|+|||||.......+..|+
T Consensus       188 ~~~~~V~~G~~~~~~~~~~~~~~~~~V~~ii~Hp~y~--~~~~~nDIALL~L~~pv~~~~~v~PicLp~~~~~~~~~~~~  265 (394)
T 2b9l_A          188 LDAIKIRAGEWDTLTEKERLPYQERKIRQVIIHSNFN--PKTVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECF  265 (394)
T ss_dssp             GGGEEEEESCCBTTCCCSSSCCEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCBCCTTCCCCBCCCTTCCCCCSCEE
T ss_pred             cccEEEEeceeeccCCcCCCccEEEEEEEEEECCCCC--CCccccceEEEEecCccccCCceeeeEcCCcccCccCCEEE
Confidence            3679999999988765554457899999999999997  46788999999999999999999999999876555678899


Q ss_pred             EeecccccCCCC-CCccCceEEEEeeeChhhHhhHhhhCC--CcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee---C
Q psy12782         87 AAGWGALQAGSR-LRPKTLQAVDVPIIDNRQCERWHKSNG--INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER---T  160 (203)
Q Consensus        87 ~~Gwg~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~---~  160 (203)
                      ++|||....+.. ..+..|+++++.+++.+.|+..+....  ....+.+.|||++... +.+.|+||+||||+|..   +
T Consensus       266 v~GWG~t~~~~~~~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~~~-g~d~C~GDSGGPLv~~~~~~~  344 (394)
T 2b9l_A          266 ASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQ-GKDTCTGDGGSPLFCPDPRNP  344 (394)
T ss_dssp             EEECCTTTTTCTTSSCCBCEEEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECCBS-SCSCCSSCTTCEEEEEETTEE
T ss_pred             EEeccCccCCCCCcccccceEEEEEEECHHHHHHHHhhcccccceecCCCEEEeeCCC-CCcCCCCCcchhhEEEEcCCC
Confidence            999998765432 236789999999999999998776431  1224789999998643 57899999999999963   5


Q ss_pred             CcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       161 ~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      ++|+|+||+||+..|+..+.|++||||+.|++||+++|+..
T Consensus       345 ~~~~lvGIvS~G~~C~~~~~PgVYT~V~~y~~WI~~~i~~~  385 (394)
T 2b9l_A          345 SRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWIDQEMQAK  385 (394)
T ss_dssp             EEEEEEEEESCTTCCCBSSSCEEEEEGGGGHHHHHHHHHHT
T ss_pred             CeEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHHhc
Confidence            78999999999999988888999999999999999999764

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=100.00  E-value=2.1e-40  Score=258.66  Aligned_cols=193  Identities=34%  Similarity=0.648  Sum_probs=164.3

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      ..+..+.|++|..+.....+.  .+.+.|.++++||+|+  .....||||||||++|+.|+++++|+|||...... .+.
T Consensus        47 ~~~~~~~v~~g~~~~~~~~~~--~~~~~v~~i~~hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~  122 (261)
T 3gyl_B           47 HHKEAYEVKLGAHQLDSYSED--AKVSTLKDIIPHPSYL--QEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGL  122 (261)
T ss_dssp             SCGGGEEEEESCSBTTSCCSS--CEEECEEEEEECTTCC--STTCSCCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTC
T ss_pred             CCcccEEEEeCceeccCCCCC--ceEEEEEEEEECCCcC--CCCCCCcEEEEEECCCccCCCceeccCCCCcccCCCCCC
Confidence            345679999999988775553  7889999999999997  46788999999999999999999999999876544 588


Q ss_pred             eeEEeecccccCCCCC-CccCceEEEEeeeChhhHhhHhhhCC---CcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee
Q psy12782         84 FGWAAGWGALQAGSRL-RPKTLQAVDVPIIDNRQCERWHKSNG---INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER  159 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~-~~~~l~~~~~~~~~~~~C~~~~~~~~---~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~  159 (203)
                      .|+++|||........ .+..|+...+.+++.+.|...+....   ....+.+.|||++....+...|.||+||||+|..
T Consensus       123 ~~~v~GwG~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~  202 (261)
T 3gyl_B          123 HCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPV  202 (261)
T ss_dssp             EEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHHHHHTTTCCTTCCCCCCTTEEEESCSSSSCBCCTTTTTCEEEEEE
T ss_pred             EEEEEecCCCCCCCCccCCccceEEEEEEECHHHhhhhhcccccccccccccCCeEeeCCCCCCCccCCCCCCCeeEEEe
Confidence            9999999987655432 25779999999999999998775221   1124789999998766668899999999999999


Q ss_pred             CCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        160 TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       160 ~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +++|+|+||+||+..|+..+.|.+||+|+.|++||+++|+..
T Consensus       203 ~~~~~lvGI~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~~  244 (261)
T 3gyl_B          203 EGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVTEL  244 (261)
T ss_dssp             TTEEEEEEEECCCCCSSCTTCCEEEEEGGGGHHHHHHHHHHH
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCEEEEHHHhHHHHHHHHhhc
Confidence            999999999999999988888999999999999999999753

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=100.00  E-value=3.5e-40  Score=255.81  Aligned_cols=187  Identities=30%  Similarity=0.623  Sum_probs=162.9

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCce
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQF   84 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~   84 (203)
                      ..+..+.|++|..+......  ..+.+.|.++++||+|+  ...+.||||||+|++|+.|++.++|||||.... ..+..
T Consensus        61 ~~~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~hp~y~--~~~~~~DIAll~L~~~~~~~~~v~picLp~~~~-~~~~~  135 (251)
T 3gov_B           61 LSPSDFKIILGKHWRLRSDE--NEQHLGVKHTTLHPQYD--PNTFENDVALVELLESPVLNAFVMPICLPEGPQ-QEGAM  135 (251)
T ss_dssp             CCGGGEEEEESCCBSSSCCS--SCEEECEEEEEECTTCB--TTTTBTCCEEEEESSCCCCSSSCCCCBCCSSCC-CTTCE
T ss_pred             cccccEEEEecceeccCCCC--cceEeeeEEEEECCCCC--CCCCCCCEEEEEeCCcccCCCceEEeECCCCCC-CCCCE
Confidence            56778999999998765544  38899999999999997  567889999999999999999999999998875 46899


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEe--eCCc
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME--RTGR  162 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~--~~~~  162 (203)
                      |.++|||....+.  .+..|+...+.+++.+.|...+...  ...+++.+||++....+...|.||+||||+|.  .+++
T Consensus       136 ~~v~GwG~~~~~~--~~~~L~~~~~~~~~~~~C~~~~~~~--~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~  211 (251)
T 3gov_B          136 VIVSGWGKQFLQR--FPETLMEIEIPIVDHSTCQKAYAPL--KKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQ  211 (251)
T ss_dssp             EEEEECSCCTTSC--CCSBCEEEEEEEECHHHHHHHTTTT--TCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCC
T ss_pred             EEEEcCCCCCCCC--CCccceEEeeEEECHHHhhhhhhhc--cCCCCCCcEEecCCCCCCccCCCCCCCeEEeeeCCCCc
Confidence            9999999876543  3678999999999999999877642  12478999999876666899999999999997  4689


Q ss_pred             EEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        163 WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       163 ~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      |+|+||+||+..|+..+.|.+||+|+.|++||+++++.
T Consensus       212 ~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  249 (251)
T 3gov_B          212 WYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVTGV  249 (251)
T ss_dssp             EEEEEEEEECSSSSCSSCCEEEEETTTTHHHHHHHHCC
T ss_pred             EEEEEEEEECCCCCCCCCCEEEEEHHHhHHHHHHHhcc
Confidence            99999999999999888899999999999999999975

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=100.00  E-value=2.5e-40  Score=256.65  Aligned_cols=189  Identities=34%  Similarity=0.620  Sum_probs=159.3

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCC----cCCCCCccceecCCCCCCc-c
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP----VQYMPHIAPICLPEKGEDF-L   81 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~----~~~~~~i~picl~~~~~~~-~   81 (203)
                      +..+.|++|.++.....+.  .+.+.|.++++||.|+. .....||||||+|++|    +.|+++++|||||...... .
T Consensus        48 ~~~~~V~~G~~~~~~~~~~--~~~~~v~~i~~hp~y~~-~~~~~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~  124 (248)
T 2r0l_A           48 RDSVSVVLGQHFFNRTTDV--TQTFGIEKYIPYTLYSV-FNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPA  124 (248)
T ss_dssp             GGGEEEEESCCBTTCCCSS--CEEECEEEEEECTTCCT-TSTTTTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTCCCCT
T ss_pred             cCcEEEEEEeEEcCCCCCc--cEEEeeeEEEeCCccCc-CCCCCCCEEEEEeCCcccccccCCCcEEEEECCCCCCCCCC
Confidence            5679999999988765553  78999999999999972 1567899999999999    8899999999999865433 5


Q ss_pred             CceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCC
Q psy12782         82 GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTG  161 (203)
Q Consensus        82 ~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~  161 (203)
                      +..|+++|||.........+..|+...+.+++.+.|......   ...+.+.+||++........|.||+||||+|..++
T Consensus       125 ~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~---~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~g  201 (248)
T 2r0l_A          125 GHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVY---GADISPNMLCAGYFDCKSDACQGDSGGPLACEKNG  201 (248)
T ss_dssp             TCEEEEEESCCSSSSCCSCCSBCEEEEEEBCCHHHHTSTTTT---GGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETT
T ss_pred             CCEEEEEEccccCCCCCCCCchheEEEEeeeCHHHhCCcccc---CCcCCCCEEeECCCCCCCcCCCCccCCeEEEEECC
Confidence            889999999987765433367899999999999999864211   12478999999866556789999999999999999


Q ss_pred             cEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        162 RWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       162 ~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +|+|+||+||+..|+..+.|.+||||+.|++||+++|+..
T Consensus       202 ~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  241 (248)
T 2r0l_A          202 VAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRPP  241 (248)
T ss_dssp             EEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHHHHC--
T ss_pred             cEEEEEEEEeCCCCCCCCCCcEEEEHHHHHHHHHHHhcCC
Confidence            9999999999999988788999999999999999999864

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=100.00  E-value=1.6e-40  Score=261.76  Aligned_cols=187  Identities=34%  Similarity=0.654  Sum_probs=156.2

Q ss_pred             ceeEEEeeeeeecccCC---------CCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCC
Q psy12782          8 RQVQVTLGDYVINSAVE---------PLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE   78 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~---------~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~   78 (203)
                      ..+.|++|.++.....+         ....+.+.|.++++||+|+.......||||||||++|+.|+++++|||||....
T Consensus        80 ~~~~V~~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~  159 (278)
T 2olg_A           80 ALNKVRLGEWNTATDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNE  159 (278)
T ss_dssp             EEEEEEESCSBTTCSSCEETTTTEECSSCCEEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCCCCSSCCCCBCCCTTC
T ss_pred             ceeEEEeCcccCCCCccccccccccCCCCceEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCcCCCCcCccCcCCCCC
Confidence            46889999988765433         124788999999999999843333479999999999999999999999998764


Q ss_pred             C-ccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEE
Q psy12782         79 D-FLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM  157 (203)
Q Consensus        79 ~-~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~  157 (203)
                      . ..+..|+++|||....+.  .+..|+...+++++.+.|...+....  ..+++.|||++... +.+.|+||+||||+|
T Consensus       160 ~~~~g~~~~v~GWG~t~~~~--~~~~l~~~~~~i~~~~~C~~~~~~~~--~~~~~~~~Ca~~~~-~~~~C~GDSGGPL~~  234 (278)
T 2olg_A          160 EVQVGQRLTVVGWGRTETGQ--YSTIKQKLAVPVVHAEQCAKTFGAAG--VRVRSSQLCAGGEK-AKDSCGGDSGGPLLA  234 (278)
T ss_dssp             CCCTTCEEEEEESCCSSSCC--CCSBCEEEEEEBCCGGGGGGGGSSTT--CCCCTTEEEECCTT-CTTCCCCCTTCEEEE
T ss_pred             CcCCCCEEEEEcCCcCCCCC--ccchhhcccccccCHHHHHHHhcccc--ccCCCceEeeecCC-CCeeCCCccCcceEE
Confidence            3 368899999999876543  36789999999999999998765321  13789999998643 578999999999999


Q ss_pred             e-eCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        158 E-RTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       158 ~-~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      . .+++|+|+||+||+..|+..+.|++||||+.|++||+++|+
T Consensus       235 ~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~i~  277 (278)
T 2olg_A          235 ERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNIR  277 (278)
T ss_dssp             EEGGGEEEEEEEEEECCBCSTTCBCEEEEEGGGGHHHHHTTCC
T ss_pred             EcCCCcEEEEEEEEECCCCCCCCCCcEEeEHHHHHHHHHHhhC
Confidence            8 56789999999999889888889999999999999999875

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=100.00  E-value=4.7e-40  Score=252.73  Aligned_cols=182  Identities=34%  Similarity=0.653  Sum_probs=153.9

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      ++..+.|++|.....      ..+.+.|.++++||+|+  .....||||||||++|+.|+++++|+|||...... .+..
T Consensus        48 ~~~~~~v~~G~~~~~------~~~~~~v~~i~~hp~y~--~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~  119 (232)
T 2oq5_A           48 NPARWTASFGVTIKP------SKMKRGLRRIIVHEKYK--HPSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDV  119 (232)
T ss_dssp             CGGGEEEEESSBSTT------CSEEEEEEEEEECTTCC--TTCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCE
T ss_pred             CCceEEEEEeeEECC------CceEEeEEEEEeCCCCC--CCCCCCCEEEEEecCCCccCCceeEeECCCccccCCCCCE
Confidence            456789999986432      36788999999999997  46788999999999999999999999999876443 5889


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee-CCcE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-TGRW  163 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-~~~~  163 (203)
                      |.++|||........ +..|+...+.+++.+.|.......   ..+.+.|||++......+.|.||+||||++.+ +++|
T Consensus       120 ~~v~GwG~~~~~~~~-~~~L~~~~~~~~~~~~C~~~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~  195 (232)
T 2oq5_A          120 MFVTGFGALKNDGYS-QNHLRQAQVTLIDATTCNEPQAYN---DAITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIW  195 (232)
T ss_dssp             EEEEESCCSSTTCCC-CSBCEEEEEEEECHHHHTSTTTTT---TCCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCE
T ss_pred             EEEEECCccCCCCCC-CceeeEeEEEEeCHHHcCCccccC---CccCCCEEeecCCCCCCccCCCCCCCcEEEECCCCCE
Confidence            999999987755432 678999999999999998753321   13788999998765567899999999999975 6889


Q ss_pred             EEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        164 FLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       164 ~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      +|+||+||+..|+..+.|.+||||+.|++||+++++
T Consensus       196 ~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  231 (232)
T 2oq5_A          196 YLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKTG  231 (232)
T ss_dssp             EEEEEEEECSSSSBTTBCEEEEETGGGHHHHHHHHC
T ss_pred             EEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhC
Confidence            999999999999887889999999999999999875

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=100.00  E-value=3.5e-40  Score=254.68  Aligned_cols=186  Identities=29%  Similarity=0.541  Sum_probs=156.4

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCC--CCCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQAD--RYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~--~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      ...+.|++|.+++.....  ..+.+.|.++++||+|+.  ...  .||||||+|++|+.|+++++|+|||...... .+.
T Consensus        50 ~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~~--~~~~~~~DIALl~L~~~v~~~~~v~pi~lp~~~~~~~~~~  125 (240)
T 1gvk_B           50 ELTFRVVVGEHNLNQNNG--TEQYVGVQKIVVHPYWNT--DDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNS  125 (240)
T ss_dssp             CCCEEEEESCSBTTSCCS--CCEEEEEEEEEECTTCCT--TCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTC
T ss_pred             CcceEEEECCeecccCCC--cceEEEEEEEEECCCCCC--CCCCCCCcEEEEEECCccccCCCccceecCCCCCCCCCCC
Confidence            367899999998876544  378899999999999974  444  8999999999999999999999999876433 588


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcE
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW  163 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~  163 (203)
                      .|.++|||........ +..|+...+++++.+.|......   ...+.+.|||++. ....+.|+||+||||+|..+++|
T Consensus       126 ~~~v~GwG~~~~~~~~-~~~L~~~~~~~~~~~~C~~~~~~---~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~g~~  200 (240)
T 1gvk_B          126 PCYITGWGLTRTNGQL-AQTLQQAYLPTVDYAICSSSSYW---GSTVKNSMVCAGG-DGVRSGCQGDSGGPLHCLVNGQY  200 (240)
T ss_dssp             CEEEEESCBSSTTCCB-CSBCEEEECCEECHHHHTSTTTT---GGGCCTTEEEECC-SSSCBCCTTCTTCEEEEEETTEE
T ss_pred             EEEEEecCcCCCCCCc-chhccEEEEEEEcHHHhcccccc---CccCCcceEeecC-CCCCcccCCCCcCceEEEECCcE
Confidence            8999999987655432 67899999999999999875221   1137899999984 34578999999999999888999


Q ss_pred             EEEEEEEecC--CCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        164 FLIGIVSAGY--SCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       164 ~lvGv~s~~~--~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +|+||+||+.  .|...+.|++||||+.|++||+++|+.+
T Consensus       201 ~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i~~n  240 (240)
T 1gvk_B          201 AVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN  240 (240)
T ss_dssp             EEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHHC
T ss_pred             EEEEEEEEeCCCCCCCCCCCcEEEeHHHHHHHHHHHHhcC
Confidence            9999999995  7887788999999999999999999753

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=2.1e-40  Score=253.33  Aligned_cols=180  Identities=33%  Similarity=0.597  Sum_probs=154.2

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWA   87 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~   87 (203)
                      +.+.|++|..++.....  ..+.+.|.++++||+|+  .....||||||||++|+.|+++++|||||.... ..+..|.+
T Consensus        44 ~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-~~~~~~~v  118 (223)
T 3mfj_A           44 SGIQVRLGEDNINVVEG--NEQFISASKSIVHPSYN--SNTLNNDIMLIKLKSAASLNSRVASISLPTSCA-SAGTQCLI  118 (223)
T ss_dssp             SSCEEEESCSSTTSCCS--CCEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCC-CTTCEEEE
T ss_pred             CCcEEEECCceecccCC--CcEEEEeeEEEECCCCC--CCCCCCCEEEEEeCCCcccCCcEeeeECCCCCC-CCCCEEEE
Confidence            46889999988765444  37899999999999997  467889999999999999999999999998764 46899999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||.........+..|+...+++++.+.|+..+..     .+.+.+||++....+.+.|.||+||||+|++    +|+|
T Consensus       119 ~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~G  189 (223)
T 3mfj_A          119 SGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG-----QITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQG  189 (223)
T ss_dssp             EESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT-----TCCTTEEEESCTTSSCBCCTTCTTCEEEETT----EEEE
T ss_pred             EeeeccCCCCCcccchheEEEEEEeCHHHhhhhhcC-----cCCCCEEEccCCCCCCCcCCCCcccceEECC----EEEE
Confidence            999987643333367899999999999999987653     3789999998655567899999999999954    4999


Q ss_pred             EEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        168 IVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       168 v~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |+||+..|+..+.|.+||||++|++||+++|+.+
T Consensus       190 I~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i~~n  223 (223)
T 3mfj_A          190 IVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN  223 (223)
T ss_dssp             EEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHHC
T ss_pred             EEEECCCCCCCCCCeEEEEHHHhHHHHHHHHhcC
Confidence            9999999987788999999999999999999753

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=100.00  E-value=3.1e-40  Score=255.62  Aligned_cols=190  Identities=32%  Similarity=0.494  Sum_probs=160.9

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCC----cCCCCCccceecCCCCCCc-
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP----VQYMPHIAPICLPEKGEDF-   80 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~----~~~~~~i~picl~~~~~~~-   80 (203)
                      .+..+.|++|..+.......  .+.+.|.++++||+|+.......||||||+|++|    +.+++.++|+|||...... 
T Consensus        53 ~~~~~~v~~g~~~~~~~~~~--~~~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~pi~lp~~~~~~~  130 (247)
T 3mhw_U           53 KKEDYIVYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQ  130 (247)
T ss_dssp             CGGGEEEEESCCBSSSCCTT--CEEEEEEEEEECTTCEEC-CCEESCCEEEEEECTTSCCCCCBTTBCCCBCCCTTCCCC
T ss_pred             CCccEEEEeccccccCCCCC--CEEEEEEEEEECCCCCCCcCCCCCcEEEEEeCCccccccccCCcccccccCCCcCCCC
Confidence            45679999999988876553  8899999999999998433336799999999999    7889999999999865433 


Q ss_pred             cCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeC
Q psy12782         81 LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT  160 (203)
Q Consensus        81 ~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~  160 (203)
                      .+..|.++|||.........+..|+...+.+++.+.|......   ...+.+.+||++........|.||+||||+|..+
T Consensus       131 ~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~---~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~  207 (247)
T 3mhw_U          131 FGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYY---GSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQ  207 (247)
T ss_dssp             TTCEEEEEESCCSSTTCSSCCSBCEEEEEEEECHHHHTSTTTT---GGGCCTTEEEEECTTSCCBCCTTCTTCEEEEEET
T ss_pred             CCCEEEEEecCCcCCCCcccchhheeeEEEEEChHHhcCcccc---CCcCCCCeEecCCCCCCCccCCCCCCCeEEEEEC
Confidence            5889999999987766544477899999999999999874321   1247899999987666689999999999999999


Q ss_pred             CcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       161 ~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      ++|+|+||+||+..|+..+.|.+||||+.|++||++++++
T Consensus       208 ~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~e  247 (247)
T 3mhw_U          208 GRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKE  247 (247)
T ss_dssp             TEEEEEEEEEECSSSSBTTBCEEEEEGGGCHHHHHHHTTC
T ss_pred             CCEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHhcC
Confidence            9999999999999999888999999999999999999864

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=100.00  E-value=2.9e-40  Score=255.87  Aligned_cols=187  Identities=36%  Similarity=0.687  Sum_probs=156.7

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      .+..+.|++|..+...     ..+.+.|.++++||+|+  .....||||||+|++|+.|+++++|||||...... .+..
T Consensus        52 ~~~~~~v~~g~~~~~~-----~~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~  124 (245)
T 2f9n_A           52 DLATLRVQLREQHLYY-----QDQLLPVSRIIVHPQFY--IIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMP  124 (245)
T ss_dssp             CGGGEEEECSCSBTTT-----TCCCBCEEEEEECTTCC--SSCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCC
T ss_pred             CcceEEEEeCCccccc-----CceEEEEEEEEECCCcc--CCCCCCcEEEEEeCCCCcCCCCccccCCCCcccCCCCCCE
Confidence            4567899999987764     25678999999999997  46788999999999999999999999999775433 5889


Q ss_pred             eEEeecccccCCCCCC-ccCceEEEEeeeChhhHhhHhhhCCC----cccccCCeEEeeeeCCCCCCCcCCCCCeeEEee
Q psy12782         85 GWAAGWGALQAGSRLR-PKTLQAVDVPIIDNRQCERWHKSNGI----NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER  159 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~~~~----~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~  159 (203)
                      |+++|||....+.... +..|+.+.+++++.+.|...+.....    ...+.+.|||++.  .+.+.|.||+||||+|..
T Consensus       125 ~~v~GwG~~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~Ca~~--~~~~~C~GDSGgPL~~~~  202 (245)
T 2f9n_A          125 CWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGN--SQRDSCQGDSGGPLVCKV  202 (245)
T ss_dssp             EEEEESCCSBTTBCCCTTCBCEEEECCEECHHHHHHHHHTTCCSCTTSCCSCTTEEEECC--SSSBCCTTCTTCEEEEEE
T ss_pred             EEEEEeCCCCCCCCCCccccceEEEEEEcCHHHhhhhhcccccccccccccccccEeecC--CCCCcCCCCCCCceEEEE
Confidence            9999999877554322 34799999999999999987753211    0136789999983  457899999999999998


Q ss_pred             CCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        160 TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       160 ~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +++|+|+||+||+..|+..+.|.+||||+.|++||+++|++.
T Consensus       203 ~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~~  244 (245)
T 2f9n_A          203 NGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVPKK  244 (245)
T ss_dssp             TTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHSCC-
T ss_pred             CCEEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHhhcC
Confidence            999999999999999988788999999999999999999764

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=100.00  E-value=4.8e-40  Score=259.75  Aligned_cols=189  Identities=34%  Similarity=0.620  Sum_probs=159.4

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCC----cCCCCCccceecCCCCCCc-c
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP----VQYMPHIAPICLPEKGEDF-L   81 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~----~~~~~~i~picl~~~~~~~-~   81 (203)
                      ++.+.|++|.+++....+.  .+.+.|.++++||+|+. .....||||||+|++|    +.|+++++|||||...... .
T Consensus        83 ~~~~~V~~G~~~~~~~~~~--~~~~~v~~i~~hp~y~~-~~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~~~~  159 (283)
T 1yc0_A           83 RDSVSVVLGQHFFNRTTDV--TQTFGIEKYIPYTLYSV-FNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPA  159 (283)
T ss_dssp             GGGEEEEESCCBTTCCCSS--CEEECEEEEEECTTCCT-TSTTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCCCCT
T ss_pred             CceEEEEEeeeecccCCCc--eEEEeeEEEEecCcccc-CCCCCCceEEEEeCCCccccccccCceeeeECCCCcCCCCC
Confidence            5679999999988765543  78999999999999972 1567899999999999    8899999999999865433 5


Q ss_pred             CceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCC
Q psy12782         82 GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTG  161 (203)
Q Consensus        82 ~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~  161 (203)
                      +..|+++|||.........+..|+...+.+++.++|......   ...+.+.|||++....+.+.|.||+||||+|..++
T Consensus       160 g~~~~v~GwG~~~~~~~~~~~~L~~~~v~i~~~~~C~~~~~~---~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~~g  236 (283)
T 1yc0_A          160 GHKCQIAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVY---GADISPNMLCAGYFDCKSDACQGDSGGPLACEKNG  236 (283)
T ss_dssp             TCEEEEEESSCSBTTBCSCCSBCEEEEEEBCCHHHHTSTTTT---GGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETT
T ss_pred             CCEEEEEEeCccCCCCCccCchheEeEEEEECHHHhcCcccc---CCcCCCCEEeeCCCCCCCccCCCCCCCceEEEECC
Confidence            889999999988765433367899999999999999864211   12478999999876556789999999999999899


Q ss_pred             cEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        162 RWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       162 ~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +|+|+||+||+..|+..+.|.+||||+.|++||+++|+..
T Consensus       237 ~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  276 (283)
T 1yc0_A          237 VAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIRPP  276 (283)
T ss_dssp             EEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHHHCC--
T ss_pred             cEEEEEEEEECCCCCCCCCCeEEEEhhhHHHHHHHHhcCC
Confidence            9999999999999988788999999999999999999864

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=2.3e-40  Score=253.87  Aligned_cols=182  Identities=33%  Similarity=0.614  Sum_probs=156.7

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeE
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW   86 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~   86 (203)
                      ...+.|++|..+......  ..+.+.|.++++||+|+  ...+.||||||||++|+.|+++++|+|||.... ..+..|+
T Consensus        47 ~~~~~V~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~-~~~~~~~  121 (228)
T 1fxy_A           47 AKRFKVRVGDRNTEQEEG--GEAVHEVEVVIKHNRFT--KETYDFDIAVLRLKTPITFRMNVAPASLPTAPP-ATGTKCL  121 (228)
T ss_dssp             CSSCEEEEECSCTTTCCC--CEEEEEEEEEEECTTCB--TTTTBTCCEEEEESSCCCCBTTBCCCCCCSSCC-CTTCEEE
T ss_pred             CCcEEEEECccCccccCC--CcEEEEEEEEEECCCCC--CCCCcCcEEEEEECCcccCCCceeccCCCCCCC-CCCCEEE
Confidence            467899999988766444  37889999999999997  467889999999999999999999999998764 4689999


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ++|||.........+..|+..++++++.+.|+..+..     .+.+.+||++....+.+.|.||+||||+|++    +|+
T Consensus       122 v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~  192 (228)
T 1fxy_A          122 ISGWGNTASSGADYPDELQCLDAPVLSQAKCEASYPG-----KITSNMFCVGFLEGGKDSCQGDSGGPVVCNG----QLQ  192 (228)
T ss_dssp             EEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT-----TCCTTEEEESCTTCSCBCCTTCTTCEEEETT----EEE
T ss_pred             EEecCccCCCCCCCCccceEEEEEEeCHHHhHhhcCC-----CCCCCEEEeccCCCCCccccCccccceEECC----EEE
Confidence            9999987655442367899999999999999987653     3788999998655567899999999999964    599


Q ss_pred             EEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        167 GIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       167 Gv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      ||+||+..|+..+.|.+||||++|++||+++|+.++
T Consensus       193 Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~~s  228 (228)
T 1fxy_A          193 GVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS  228 (228)
T ss_dssp             EEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHHTC
T ss_pred             EEEEECCCCCCCCCCEEEEEhHHHHHHHHHHHhccC
Confidence            999999999877889999999999999999998753

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=100.00  E-value=1.1e-39  Score=250.97  Aligned_cols=182  Identities=27%  Similarity=0.455  Sum_probs=155.0

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      ++..+.|++|..+.....+....+.+.|.+++.||.        .+|||||+|++|+.|+++++|||||...... .+..
T Consensus        47 ~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~hp~--------~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~  118 (234)
T 2asu_B           47 PLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPS--------GSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTK  118 (234)
T ss_dssp             CCTTCEEEESCSBSSCCTTCTTCEEEEEEEEEECST--------TCCEEEEEESSCCCCSSSSCCCBCCCTTCCCCTTCE
T ss_pred             CcccEEEEEeeeeccCCCCCCceEEEEEEEEecCCC--------CCCeEEEEeCCcCcCCCcEeccCCCCccccCCCCCE
Confidence            467899999999887653333578999999999995        3599999999999999999999999875433 5889


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |+++|||.......  +..|+...+.+++.+.|...+..     .+.+.+||++....+...|.||+||||+|..+++|+
T Consensus       119 ~~v~GwG~~~~~~~--~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~  191 (234)
T 2asu_B          119 CEIAGWGETKGTGN--DTVLNVALLNVISNQECNIKHRG-----RVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWV  191 (234)
T ss_dssp             EEEEESSCCTTSSC--TTBCEEEEEEEECHHHHHHHTTT-----CCCTTEEEECCCSSCCBCCTTCTTCEEEEEETTEEE
T ss_pred             EEEEeCCccCCCCC--CccceEEEeeEEcHHHcccccCC-----ccCcceEeecCCCCCCeeccCCCCCceEEEECCeEE
Confidence            99999998765542  57899999999999999987643     378999999876556789999999999999999999


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      |+||+||+..|+..+.|.+||||+.|++||+++++..+
T Consensus       192 l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~~~  229 (234)
T 2asu_B          192 LEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLGH  229 (234)
T ss_dssp             EEEEECCCSSSSCTTCCEEEEEGGGSHHHHHHHC----
T ss_pred             EEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHhhccc
Confidence            99999999999888889999999999999999998764

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=100.00  E-value=1.2e-39  Score=251.78  Aligned_cols=187  Identities=25%  Similarity=0.458  Sum_probs=156.2

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCC-CCCccCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK-GEDFLGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~-~~~~~~~~   84 (203)
                      ++..+.|++|.++.....   ..+.+.|.++++||+|+.+...+.||||||+|++|+.|+++++|+|||.. .....+..
T Consensus        50 ~~~~~~v~~G~~~~~~~~---~~~~~~v~~i~~hp~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~  126 (241)
T 1m9u_A           50 LPNNIRVIAGLWQQSDTS---GTQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTT  126 (241)
T ss_dssp             CGGGEEEEESCSBTTCCT---TCEEEEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTCE
T ss_pred             CcceEEEEEEeecCCCCC---CceEEEEEEEEeCCCcCCCCCcccccEEEEEecCccccCCCccccCcCCCcCCCCCCCE
Confidence            467899999998877532   37899999999999994335678999999999999999999999999987 33346889


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |.++|||....... .+..|+...+.+++.++|...+.... ...+.+.+||++........|.||+||||+|.. ++|+
T Consensus       127 ~~v~GwG~~~~~~~-~~~~L~~~~~~~~~~~~C~~~~~~~~-~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~  203 (241)
T 1m9u_A          127 CVISGWGRTDGTNN-LPDILQKSSIPVITTAQCTAAMVGVG-GANIWDNHICVQDPAGNTGACNGDSGGPLNCPD-GGTR  203 (241)
T ss_dssp             EEEEESSCSSSSSC-CCSBCEEEEEEBCCHHHHHHHHTTST-TCCCCTTEEEECCTTSCCBCCTTCTTCEEEEES-SSEE
T ss_pred             EEEEeCcccCCCCC-cccceeEeeEEEEcHHHhhhhhcccC-CCcccCCcEEECcCCCCCeeecCcCCccEEEeC-CCEE
Confidence            99999998875543 36789999999999999998654211 012678999998755567899999999999986 8899


Q ss_pred             EEEEEEe----cCCCCCCCCCeEEEeCCCCHHHHHHhh
Q psy12782        165 LIGIVSA----GYSCAQQGQPGIYHRVAYTVDWISYIM  198 (203)
Q Consensus       165 lvGv~s~----~~~c~~~~~~~v~t~v~~~~~WI~~~i  198 (203)
                      |+||+||    +..|+..+.|.+||||++|++||+++|
T Consensus       204 l~Gi~S~~~~~g~~C~~~~~p~vyt~V~~~~~WI~~~~  241 (241)
T 1m9u_A          204 VVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDNS  241 (241)
T ss_dssp             EEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHHHC
T ss_pred             EEEEEEEeccCCCCccCCCCCEEEEEhHHhHhHHhhhC
Confidence            9999999    457987788999999999999999875

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=100.00  E-value=7e-40  Score=250.31  Aligned_cols=178  Identities=31%  Similarity=0.645  Sum_probs=153.3

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWA   87 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~   87 (203)
                      +.+.|++|.++......  ..+.+.|.++++||+|+  .....||||||||++|+.|++.++|||||.... ..+..|++
T Consensus        44 ~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-~~~~~~~v  118 (222)
T 1hj8_A           44 SRVEVRLGEHNIKVTEG--SEQFISSSRVIRHPNYS--SYNIDNDIMLIKLSKPATLNTYVQPVALPTSCA-PAGTMCTV  118 (222)
T ss_dssp             SSCEEEESCSBTTSCCS--CCEEEEEEEEEECTTCB--TTTTBSCCEEEEESSCCCCSSSCCCCBCCSSCC-CTTCEEEE
T ss_pred             CCeEEEEcccccccCCC--CcEEEEEEEEEECCCCC--CCCCCCcEEEEEECCcccCCCceeccCCCCCCC-CCCCEEEE
Confidence            45789999988765444  37889999999999997  467889999999999999999999999998753 46889999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||....... .+..|+...+++++.++|+..+..     .+.+.+||++....+.+.|.||+||||+|++    +|+|
T Consensus       119 ~GwG~~~~~~~-~~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~G  188 (222)
T 1hj8_A          119 SGWGNTMSSTA-DSNKLQCLNIPILSYSDCNNSYPG-----MITNAMFCAGYLEGGKDSCQGDSGGPVVCNG----ELQG  188 (222)
T ss_dssp             EESSCCCCSSC-CTTBCEEEEEEBCCHHHHHHHSTT-----CCCTTEEEESCTTSSCBCCTTCTTCEEEETT----EEEE
T ss_pred             EECCCCCCCCC-CCceeEEEEEEEcCHHHhhhhccC-----CCCCCeEEeccCCCCCccCCCCcccceEECC----EEEE
Confidence            99998765443 367899999999999999987654     3789999998655567899999999999954    4999


Q ss_pred             EEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        168 IVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       168 v~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      |+||+..|+..+.|.+||||+.|++||+++|+.
T Consensus       189 i~S~g~~C~~~~~p~vyt~v~~~~~WI~~~~~~  221 (222)
T 1hj8_A          189 VVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMAS  221 (222)
T ss_dssp             EEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHC
T ss_pred             EEeecCCCCCCCcCcEEEEhHHhHHHHHHHhhc
Confidence            999999998878899999999999999999875

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=1e-39  Score=253.73  Aligned_cols=186  Identities=30%  Similarity=0.548  Sum_probs=155.5

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      ++..+.|++|.++.....+. ..+.+.|.++++||+|+  .....||||||+|++|+.|+++++|||||...... .+..
T Consensus        62 ~~~~~~V~~G~~~~~~~~~~-~~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~  138 (251)
T 1pyt_D           62 NTLTYRVALGKNNLEVEDEA-GSLYVGVDTIFVHEKWN--SFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYP  138 (251)
T ss_dssp             TTCCEEEEESCSBTTCSCCS-SCEEEEEEEEEECTTCB--TTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCE
T ss_pred             CCceEEEEEcccccccCCCC-CcEEEEEEEEEECCCCC--CCCCCCCEEEEEECCCcccCCCeeeeEcCCCcccCCCCCE
Confidence            35678999999887643222 36788999999999997  45788999999999999999999999999876433 5788


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |+++|||....+... +..|+...+.+++.+.|...+..   ...+.+.+||++. ....+.|.||+||||+|..+++|+
T Consensus       139 ~~v~GwG~~~~~~~~-~~~L~~~~~~~~~~~~C~~~~~~---~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~~~~~  213 (251)
T 1pyt_D          139 CFVTGWGRLYTNGPI-AAELQQGLQPVVDYATCSQRDWW---GTTVKETMVCAGG-DGVISACNGDSGGPLNCQADGQWD  213 (251)
T ss_dssp             EEECBCCCSSCCSCC-CSBCBCCEEECBCHHHHTSTTTT---TTTCCTTEEEECC-SCSSCCCCSCTTCEEEEESSSSEE
T ss_pred             EEEEecccCCCCCCc-ccchheeEeEeeCHHHcchhhcc---CCCcCCCeEEecC-CCCCccCCCCCCCceEEEECCCEE
Confidence            999999987655433 56799999999999999875421   1137899999985 345689999999999999889999


Q ss_pred             EEEEEEecC--CCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        165 LIGIVSAGY--SCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       165 lvGv~s~~~--~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      |+||+||+.  .|+..+.|.+||||+.|++||+++|+
T Consensus       214 l~GI~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~~~  250 (251)
T 1pyt_D          214 VRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKLQ  250 (251)
T ss_dssp             EEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHHTT
T ss_pred             EEEEEEECCCCCCCCCCCCeEEEEHHHHHHHHHHHhc
Confidence            999999996  68877889999999999999999885

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=1.2e-39  Score=249.04  Aligned_cols=179  Identities=33%  Similarity=0.601  Sum_probs=156.5

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEe
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAA   88 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~   88 (203)
                      .+.|++|..+.......  .+.+.|.++++||+|+  ..++.||||||+|++|+.|++.++|+|||.... ..+..|.++
T Consensus        45 ~~~v~~g~~~~~~~~~~--~~~~~v~~~~~hp~y~--~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~-~~~~~~~v~  119 (223)
T 4i8h_A           45 GIQVRLGEDNINVVEGN--EQFISASKSIVHPSYN--SNTLNNDIMLIKLKSAASLNSRVASISLPTSCA-SAGTQCLIS  119 (223)
T ss_dssp             SCEEEESCSSTTSCCSC--CEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCC-CTTCEEEEE
T ss_pred             CcEEEEccccccccCCC--cEEEEEeEEEECcCCC--CCCCcCCEEEEEECCcCcCCCceeceECCCCCC-CCCCEEEEE
Confidence            67899999887755443  7889999999999997  467889999999999999999999999998764 468999999


Q ss_pred             ecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEE
Q psy12782         89 GWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGI  168 (203)
Q Consensus        89 Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv  168 (203)
                      |||.........+..|+...+.+++.+.|...++.     .+.+.+||++........|.||+||||+|.+    +|+||
T Consensus       120 GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi  190 (223)
T 4i8h_A          120 GWGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPG-----QITSNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGI  190 (223)
T ss_dssp             ESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHHSTT-----TCCTTEEEESCTTSSCBCCTTCTTCEEEETT----EEEEE
T ss_pred             ecccccCCCCCccccceEEEeeecCHHHHHHhhCC-----CCCCCeEeccCCCCCCccCCCCCCCcEEECC----EEEEE
Confidence            99988765444467899999999999999988764     3789999998666678999999999999965    49999


Q ss_pred             EEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        169 VSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       169 ~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +||+..|+..+.|.+||||+.|++||+++|+.+
T Consensus       191 ~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~~  223 (223)
T 4i8h_A          191 VSWGSGCAQKNKPGVYTKVCNYVSWIKQTIASN  223 (223)
T ss_dssp             EEECSSSSCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             EEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhcC
Confidence            999999998889999999999999999999753

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=100.00  E-value=1.4e-39  Score=266.00  Aligned_cols=190  Identities=33%  Similarity=0.598  Sum_probs=158.7

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCC----CCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKF----TPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-   80 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~----~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-   80 (203)
                      .+..+.|++|.++....    ..+.+.|+++++||+|+.    +...+.||||||||++|+.|+++++|||||...... 
T Consensus       166 ~~~~~~V~~G~~~~~~~----~~~~~~V~~i~~Hp~y~~~~~~~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~  241 (372)
T 1z8g_A          166 VLSRWRVFAGAVAQASP----HGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALV  241 (372)
T ss_dssp             CGGGEEEEESCSBTTCT----TSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCC
T ss_pred             ccceEEEEEeeEeccCC----CCcEEEEEEEEECCCccccccCCCCCCCccEEEEEECCCCCCCCceeccccCCcccCCC
Confidence            45678999999876542    256799999999999921    256788999999999999999999999999875433 


Q ss_pred             cCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeC
Q psy12782         81 LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT  160 (203)
Q Consensus        81 ~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~  160 (203)
                      .+..|+++|||....... .+..|+.+.+++++.+.|......   ...+++.|||++....+.+.|+||+||||+|...
T Consensus       242 ~g~~~~v~GWG~t~~~~~-~~~~L~~~~v~ii~~~~C~~~~~~---~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~  317 (372)
T 1z8g_A          242 DGKICTVTGWGNTQYYGQ-QAGVLQEARVPIISNDVCNGADFY---GNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDS  317 (372)
T ss_dssp             TTCEEEEEESSBSSTTSC-BCSBCEEEEEEEECHHHHTSTTTT---TTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEEC
T ss_pred             CCCEEEEEecCCCCCCCC-CCceeeEEEEEecChHHhCcchhc---CCcCCCCeEeeecCCCCCcCCCCCCccceEeccC
Confidence            588999999998876543 367899999999999999863211   1137899999987666678999999999999875


Q ss_pred             ----CcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccCC
Q psy12782        161 ----GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTATN  203 (203)
Q Consensus       161 ----~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~~  203 (203)
                          ++|+|+||+||+..|+..+.|.+||||+.|++||+++|+..++
T Consensus       318 ~~~~~~~~lvGIvS~G~~C~~~~~p~vyt~V~~y~~WI~~~i~~~~~  364 (372)
T 1z8g_A          318 ISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKTHSE  364 (372)
T ss_dssp             TTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHHHHHHHHHTTT
T ss_pred             cCCCCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHHhccCC
Confidence                8999999999999998888999999999999999999987654

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=5.4e-40  Score=253.80  Aligned_cols=188  Identities=32%  Similarity=0.640  Sum_probs=152.5

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCC-CCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFT-PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      .+..+.|++|.++.....+   .+.+.|.++++||+|+.. ...+.||||||||++|+.|+++++|||||...... .+.
T Consensus        50 ~~~~~~v~~G~~~~~~~~~---~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~  126 (242)
T 2qy0_B           50 SNASLDVFLGHTNVEELMK---LGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGL  126 (242)
T ss_dssp             ---CCEEEESCSBHHHHHH---HCCCCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTC
T ss_pred             CCceEEEEEeecccccccc---ccceeEEEEEECCCCccCcCCCCCCcEEEEEECCCCcCCCCcceeecCCCccccCCCC
Confidence            4567899999988654322   356789999999999742 23678999999999999999999999999775432 578


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEe--eCC
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME--RTG  161 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~--~~~  161 (203)
                      .|+++|||.....   .+..|+...+++++.+.|...+........+.+.+||++........|+||+||||++.  .++
T Consensus       127 ~~~v~GwG~~~~~---~~~~L~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~  203 (242)
T 2qy0_B          127 MGYVSGFGVMEEK---IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD  203 (242)
T ss_dssp             EEEEEECCCCSSS---CCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTC
T ss_pred             eEEEEeeccCCCc---CCccceEEEEEEeCHHHHHHHhccccccccCCCCEEeccCCCCCCccccCCCCCcEEEEECCCC
Confidence            8999999987654   26789999999999999998765432222468899999866556789999999999995  467


Q ss_pred             cEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        162 RWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       162 ~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +|+|+||+||+..|..  .|.+||||+.|++||+++|+.+
T Consensus       204 ~~~l~Gi~S~g~~C~~--~~~vyt~V~~y~~WI~~~~~~~  241 (242)
T 2qy0_B          204 RWVATGIVSWGIGCSR--GYGFYTKVLNYVDWIKKEMEEE  241 (242)
T ss_dssp             CEEEEEEEEECSSSSS--SCEEEEEGGGGHHHHHHHTTC-
T ss_pred             eEEEEEEEEECCCcCC--CCcEEEEHHHHHHHHHHHhhcc
Confidence            8999999999998975  3899999999999999999865

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=100.00  E-value=2.7e-39  Score=247.19  Aligned_cols=177  Identities=30%  Similarity=0.532  Sum_probs=152.2

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWA   87 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~   87 (203)
                      ..+.|++|.++.......  .+.+.|.++++||+|+  ..+..||||||+|++|+.|++.++|+|||.... ..+..|.+
T Consensus        45 ~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~Hp~y~--~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~-~~~~~~~v  119 (223)
T 1lo6_A           45 PNLQVFLGKHNLRQRESS--QEQSSVVRAVIHPDYD--AASHDQDIMLLRLARPAKLSELIQPLPLERDCS-ANTTSCHI  119 (223)
T ss_dssp             TTCEEEESCSBTTSCCTT--CEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCBTTBCCCCBCCCTT-CCCCEEEE
T ss_pred             CCeEEEEcceecCCCCCC--cEEEEEEEEEECCCCC--CCCCcCeEEEEEECCcccCCCceeecccCCCCC-CCCCEEEE
Confidence            458899999888765443  7889999999999997  467889999999999999999999999998764 46899999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||.... .. .+..|+...+.+++.+.|...+..     .+++.+||++....+.+.|.||+||||+|++    +|+|
T Consensus       120 ~GwG~~~~-~~-~~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~----~l~G  188 (223)
T 1lo6_A          120 LGWGKTAD-GD-FPDTIQCAYIHLVSREECEHAYPG-----QITQNMLCAGDEKYGKDSCQGDSGGPLVCGD----HLRG  188 (223)
T ss_dssp             EESSCCTT-SS-CCSBCEEEEEEEECHHHHHHHSTT-----TCCTTEEEEECTTTCCBCCTTTTTCEEEETT----EEEE
T ss_pred             EEECCCCC-CC-cCceeeEEEEEEeCHHHhhhhhCC-----CCCCCeEEeecCCCCCeeccccCCCcEEeCC----EEEE
Confidence            99998762 22 367899999999999999987654     3789999998765567899999999999964    4999


Q ss_pred             EEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        168 IVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       168 v~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      |+||+ ..|+..+.|.+||||+.|++||+++|+.
T Consensus       189 i~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  222 (223)
T 1lo6_A          189 LVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQA  222 (223)
T ss_dssp             EEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC-
T ss_pred             EEeeCCCCCCCCCCCcEEEEHHHHHHHHHHHhcc
Confidence            99999 5898778899999999999999999875

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=100.00  E-value=3.8e-39  Score=247.00  Aligned_cols=181  Identities=29%  Similarity=0.575  Sum_probs=153.2

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWA   87 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~   87 (203)
                      +.+.|++|.++.....+. ..+.+.|.++++||+|+  ...+.||||||||++|+.|++.++|+|||... ...+..|++
T Consensus        46 ~~~~v~~G~~~~~~~~~~-~~~~~~v~~~~~Hp~y~--~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~-~~~~~~~~v  121 (227)
T 2psx_A           46 KVFRVRLGHYSLSPVYES-GQQMFQGVKSIPHPGYS--HPGHSNDLMLIKLNRRIRPTKDVRPINVSSHC-PSAGTKCLV  121 (227)
T ss_dssp             SSCEEEESCCBSSCCCCT-TCEEEEEEEEEECTTCC--SSSCTTCCEEEEESSCCCCCSSSCCCCBCSSC-CCTTCEEEE
T ss_pred             CCcEEEEeeeecccCCCC-CcEEEEEEEEEeCCCCC--CCCCCCCEEEEEeCCCCCCCCceeeeECCCCC-CCCCCEEEE
Confidence            357899999887654222 36889999999999997  46788999999999999999999999999654 346889999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||.........+..|+...+++++.++|+..++.     .+.+.+||++. ..+.+.|.||+||||+|++    +|+|
T Consensus       122 ~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~-----~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~----~l~G  191 (227)
T 2psx_A          122 SGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDAYPR-----QIDDTMFCAGD-KAGRDSCQGDSGGPVVCNG----SLQG  191 (227)
T ss_dssp             EESSCSSSSSCCCCSBCEEEEEEBCCHHHHHHHSTT-----TCCTTEEEECC-STTCBCCTTCTTCEEEETT----EEEE
T ss_pred             EeCcccCCCCCCCCchheEEEEEecCHhHhhhhcCC-----CCCCCEEcccC-CCCCccCCCCCCcceeeCC----EEEE
Confidence            999987765433367899999999999999987754     37899999985 3457899999999999964    5999


Q ss_pred             EEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        168 IVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       168 v~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      |+||+ ..|+..+.|.+||||+.|++||+++|+.++
T Consensus       192 i~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~s  227 (227)
T 2psx_A          192 LVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQANS  227 (227)
T ss_dssp             EEEECCSSTTCTTCCEEEEEGGGCHHHHHHHHHHTC
T ss_pred             EEeecCCCCCCCCCCcEEEEHHHhHHHHHHHHhcCC
Confidence            99999 689887889999999999999999998753

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=100.00  E-value=2.8e-39  Score=249.73  Aligned_cols=178  Identities=30%  Similarity=0.553  Sum_probs=151.4

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCC-CCCCeEEEEECCCcCCCCCccceecCCCCCC-ccCceeE
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQA-DRYDVAVLRLDRPVQYMPHIAPICLPEKGED-FLGQFGW   86 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~-~~~DiALl~L~~~~~~~~~i~picl~~~~~~-~~~~~~~   86 (203)
                      .+.|++|..++...     ++.+.|.++++||+|+  ... +.||||||||++|+.|+++++|||||..... ..+..|+
T Consensus        49 ~~~v~~G~~~~~~~-----~~~~~v~~i~~Hp~y~--~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~  121 (240)
T 2zgc_A           49 QLRLVLGLHTLDSP-----GLTFHIKAAIQHPRYK--PVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCS  121 (240)
T ss_dssp             GEEEEESCSBSSSC-----CEEEEEEEEEECTTCB--CTTSCBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEE
T ss_pred             CEEEEecccccCCC-----CeEEEEEEEEECCCCC--CCCCCcccEEEEEeCCcccCCCceeeeEcCCCCCCCCCCCEEE
Confidence            68999999877652     5889999999999997  334 7899999999999999999999999987643 3588999


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhh--HhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCER--WHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~--~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      ++|||....... .+..|+.+.+++++.+.|..  .+..     .+.+.+||++........|.||+||||+|.+  .|+
T Consensus       122 v~GwG~~~~~~~-~~~~L~~~~~~~~~~~~C~~~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~--~~~  193 (240)
T 2zgc_A          122 MAGWGLTHQGGR-LSRVLRELDLQVLDTRMCNNSRFWNG-----SLSPSMVCLAADSKDQAPCKGDSGGPLVCGK--GRV  193 (240)
T ss_dssp             EEECCBSSTTCC-BCSBCEEEEEEECCHHHHTSTTTTTT-----CCCTTEEEEECSSTTCBCCTTCTTCEEEETT--TTE
T ss_pred             EEECCcccCCCC-cCceeeeeeeeecCHHHhCCccccCC-----CCCCceEeeccCCCCCccCCCCccCeeEECC--CCE
Confidence            999998765443 36789999999999999987  3332     3678999998665567899999999999963  478


Q ss_pred             EEEEEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        165 LIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       165 lvGv~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |+||+||+ ..|+..+.|.+||||+.|++||+++++..
T Consensus       194 l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~~  231 (240)
T 2zgc_A          194 LAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGRS  231 (240)
T ss_dssp             EEEEECCCCSSTTCTTSCCEEEESGGGHHHHHHHHCCC
T ss_pred             EEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHHHHhhc
Confidence            99999999 67988788999999999999999999865

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=100.00  E-value=3.8e-39  Score=248.28  Aligned_cols=184  Identities=26%  Similarity=0.490  Sum_probs=153.3

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCcee
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFG   85 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~   85 (203)
                      .+.+.|++|.+++....+.  .+.+.|.++++||+|+.......||||||||++|+.|++.++|+|||...... .+..|
T Consensus        50 ~~~~~V~~G~~~~~~~~~~--~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~  127 (236)
T 1elt_A           50 ARTWRVVLGEHNLNTNEGK--EQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPC  127 (236)
T ss_dssp             CCCEEEEESCSBTTSCCSC--CEEECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCE
T ss_pred             cCceEEEEccccCCCCCCC--cEEEEEEEEEECCCCCCCCCCCCccEEEEECCCCCccCCcEEeccCCCccccCCCCCEE
Confidence            4678999999988765443  78999999999999974222228999999999999999999999999876433 57889


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFL  165 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~l  165 (203)
                      .++|||....... .+..|+...+++++.+.|......   ...+.+.+||++..  +...|.||+||||+|..+++|+|
T Consensus       128 ~v~GwG~~~~~~~-~~~~l~~~~~~~~~~~~C~~~~~~---~~~~~~~~~Ca~~~--~~~~C~GDSGgPL~~~~~g~~~l  201 (236)
T 1elt_A          128 YITGWGKTSTGGP-LSDSLKQAWLPSVDHATCSSSGWW---GSTVKTTMVCAGGG--ANSGCNGDSGGPLNCQVNGSYYV  201 (236)
T ss_dssp             EEEESCCSSTTCC-CCSBCEEEECCEECHHHHTSTTTT---GGGSCTTEEEECCS--SCBCCTTCTTCEEEEEETTEEEE
T ss_pred             EEEeCCCcCCCCC-cChhheEeEeeecCHHHhcccccc---CCcCCcceEEecCC--CCccCCCCCCCeeEEEECCEEEE
Confidence            9999998765543 267899999999999999875321   11478999999832  37899999999999998899999


Q ss_pred             EEEEEecC--CCCCCCCCeEEEeCCCCHHHHHHhh
Q psy12782        166 IGIVSAGY--SCAQQGQPGIYHRVAYTVDWISYIM  198 (203)
Q Consensus       166 vGv~s~~~--~c~~~~~~~v~t~v~~~~~WI~~~i  198 (203)
                      +||+||+.  .|+..+.|.+||||+.|++||+++|
T Consensus       202 ~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i  236 (236)
T 1elt_A          202 HGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             EEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred             EEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHhhC
Confidence            99999985  7887788999999999999999875

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=100.00  E-value=3.6e-39  Score=249.00  Aligned_cols=185  Identities=25%  Similarity=0.471  Sum_probs=155.5

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCcee
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFG   85 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~   85 (203)
                      ....+.|++|.+++...+..  .+.+.|.++++||+|+  .....||||||+|++|+.|+++++|+|||.......+..|
T Consensus        50 ~~~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~hp~y~--~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~  125 (240)
T 1mza_A           50 KGQSPTVVLGAHSLSKNEAS--KQTLEIKKFIPFSRVT--SDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKC  125 (240)
T ss_dssp             SCSCEEEEESCSBSSSCCTT--CEEEEEEEEEECCCSS--CSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEE
T ss_pred             CCCCeEEEeCceecCCCCCc--eEEEEEEEEEeCCCcc--CCCCCceEEEEEeCCCcccCCceeeeecCCcccCCCCCEE
Confidence            35678999999987765443  7899999999999997  4678899999999999999999999999985333468999


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHh--hHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCE--RWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW  163 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~--~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~  163 (203)
                      +++|||.........+..|+...+.+++.+.|.  ..+...   ..+.+.|||++......+.|+||+||||+|++    
T Consensus       126 ~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~~~----  198 (240)
T 1mza_A          126 KVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGD---PFITKDMVCAGDAKGQKDSCKGDAGGPLICKG----  198 (240)
T ss_dssp             EEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTSTTTTTTT---TCCCTTEEEEECTTSCCCCCTTCTTCEEEETT----
T ss_pred             EEEeCCcCCCCCCCccccceEeEEEEeCHHHcCCcceeCCC---CcCCCCeEeecCCCCCCccCCCCCCCeeEECC----
Confidence            999999887655423678999999999999998  333321   13788999998655567899999999999953    


Q ss_pred             EEEEEEEecCCCCCCCCCeEEEeCCC-CHHHHHHhhccc
Q psy12782        164 FLIGIVSAGYSCAQQGQPGIYHRVAY-TVDWISYIMNTA  201 (203)
Q Consensus       164 ~lvGv~s~~~~c~~~~~~~v~t~v~~-~~~WI~~~i~~~  201 (203)
                      +|+||+||+..|+..+.|.+||+|+. |++||+++|+..
T Consensus       199 ~l~Gi~S~g~~C~~~~~p~vyt~v~~~y~~WI~~~~~~~  237 (240)
T 1mza_A          199 VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVPP  237 (240)
T ss_dssp             EEEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHHTCCS
T ss_pred             EEEEEEEECCCCCCCCCCcEEEeChHHHHHHHHHhccCC
Confidence            59999999999988888999999999 999999999854

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=100.00  E-value=2.3e-39  Score=252.26  Aligned_cols=191  Identities=31%  Similarity=0.641  Sum_probs=157.5

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC----c
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED----F   80 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~----~   80 (203)
                      ..+..+.|++|.++....... ..+...|.++++||+|+. ...+.||||||+|++|+.|+++++|||||.....    .
T Consensus        54 ~~~~~~~v~~G~~~~~~~~~~-~~~~~~v~~i~~hp~y~~-~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~  131 (259)
T 3rm2_H           54 FTENDLLVRIGKHSRTRYERN-IEKISMLEKIYIHPRYNW-RENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQ  131 (259)
T ss_dssp             CCGGGEEEEESCCBSSSCCTT-TCEEEEEEEEEECTTCBT-TTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCC
T ss_pred             cCcccEEEEECcccccccccC-cceeeEEEEEEECCCCCC-CCCCCCcEEEEEeCCceEcCCCcccccCCCccccccccC
Confidence            356789999999988664432 355666999999999973 3567899999999999999999999999976532    2


Q ss_pred             cCceeEEeecccccCCCC-----CCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeC---CCCCCCcCCCC
Q psy12782         81 LGQFGWAAGWGALQAGSR-----LRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRG---GAKDSCQGDSG  152 (203)
Q Consensus        81 ~~~~~~~~Gwg~~~~~~~-----~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~---~~~~~c~~d~G  152 (203)
                      .+..|.++|||.......     ..+..|+.+.+.+++.+.|...+..     .+++.+||++...   .....|.||+|
T Consensus       132 ~g~~~~v~GwG~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~Cag~~~~~~~~~~~C~GDsG  206 (259)
T 3rm2_H          132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI-----RITDNMFCAGYKPDEGKRGDACEGDSG  206 (259)
T ss_dssp             TTCEEEEEESCCSSCC-------CCCSBCEEEEEEBCCHHHHHHTCSS-----CCCTTEEEECCCGGGSCCCBCCTTCTT
T ss_pred             CCCEEEEeecCCCcCcCCccccccccccceEEEEEEeCHHHhhhhhcc-----cCCCceEeeeccCCCCCCCcccCCCCC
Confidence            478899999998654321     1256799999999999999987643     4789999997532   23589999999


Q ss_pred             CeeEEee--CCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        153 GPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       153 ~pl~~~~--~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      |||+|..  +++|+|+||+||+..|+..+.|.+||||+.|++||+++|++..
T Consensus       207 gPL~~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i~~~g  258 (259)
T 3rm2_H          207 GPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG  258 (259)
T ss_dssp             CEEEEECTTTCCEEEEEEEEECSSSSCTTCCEEEEETGGGHHHHHHHHHHHC
T ss_pred             CeeEEEECCCCCEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHHHcC
Confidence            9999987  8899999999999999988899999999999999999998653

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.7e-39  Score=247.52  Aligned_cols=183  Identities=31%  Similarity=0.525  Sum_probs=155.3

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCC---------CCCCCCCeEEEEECCCcC-CCCCccceecCCCC
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFT---------PQADRYDVAVLRLDRPVQ-YMPHIAPICLPEKG   77 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~---------~~~~~~DiALl~L~~~~~-~~~~i~picl~~~~   77 (203)
                      +.+.|++|.++....+..  .+.+.|.++++||+|+..         ...+.||||||+|++|+. +++.++|+|||...
T Consensus        45 ~~~~v~~G~~~~~~~~~~--~~~~~v~~~~~hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~~~  122 (238)
T 1spj_A           45 DNYQLWLGRHNLFDDENT--AQFVHVSESFPHPGFNMSLLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEE  122 (238)
T ss_dssp             SSEEEEESCSBTTSCCTT--CEEECEEEEEECTTSCGGGGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCSSC
T ss_pred             CCceEEEEeccccCCCCC--ceEEEEEEEEcCCCccccccccccccccccCCCCeEEEEECccccccCCceeeccCCCCC
Confidence            357899999887665443  788999999999999721         356789999999999998 99999999999776


Q ss_pred             CCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEE
Q psy12782         78 EDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM  157 (203)
Q Consensus        78 ~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~  157 (203)
                      . ..+..|.++|||.........+..|+...+++++.++|...+..     .+.+.+||++....+.+.|.||+||||+|
T Consensus       123 ~-~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~  196 (238)
T 1spj_A          123 P-EVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKKAHVQ-----KVTDFMLCVGHLEGGKDTCVGDSGGPLMC  196 (238)
T ss_dssp             C-CTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHCSS-----CCCTTEEEEECTTCSSBCCTTCTTCEEEE
T ss_pred             C-CCCCEEEEEecCCCCCCCCCCcCcccEEEEeecCHHHhhhhccC-----CCCCCeEEeeCCCCCCCCCCCCCCCcEEE
Confidence            4 46899999999988765433467899999999999999987653     36899999987556689999999999999


Q ss_pred             eeCCcEEEEEEEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        158 ERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       158 ~~~~~~~lvGv~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      +.    +|+||+||+ ..|+..+.|.+||||+.|++||+++|+.++
T Consensus       197 ~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~~s  238 (238)
T 1spj_A          197 DG----VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIAENS  238 (238)
T ss_dssp             TT----EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHHTC
T ss_pred             cC----EEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHHHhhcCC
Confidence            63    699999999 679887889999999999999999998753

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=3.2e-39  Score=248.52  Aligned_cols=182  Identities=31%  Similarity=0.514  Sum_probs=153.9

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCC---------CCCCCCCeEEEEECCCcCCCCCccceecCCCCC
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFT---------PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE   78 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~---------~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~   78 (203)
                      +.+.|++|..+....+.  ..+.+.|.++++||+|+..         .....||||||+|++|+.|+++++|||||....
T Consensus        43 ~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~  120 (235)
T 1ton_A           43 NNYQVLLGRNNLFKDEP--FAQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEP  120 (235)
T ss_dssp             SCCEEEESCSBTTSCCT--TCEEECEEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCC
T ss_pred             CCcEEEeCcccccCCCC--cceEEEEEEEEeCCCCcccccccccccccCCCcCCEEEEEcCCccccCCcceeeeCCCCCC
Confidence            46889999988765443  3788999999999999731         156789999999999999999999999998764


Q ss_pred             CccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEe
Q psy12782         79 DFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME  158 (203)
Q Consensus        79 ~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~  158 (203)
                       ..+..|.++|||.........+..|+...+++++.++|...+..     .+.+.+||++....+.+.|.||+||||+++
T Consensus       121 -~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~  194 (235)
T 1ton_A          121 -KVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIETYKD-----NVTDVMLCAGEMEGGKDTCAGDSGGPLICD  194 (235)
T ss_dssp             -CTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECGGGCGGGGST-----TGGGGEEEEECTTCSCBCCTTCTTCEEEET
T ss_pred             -CCCCEEEEEecCCCCCCCCccCccceEEEEEEeCHHHHHHHhcC-----cCCCCeEeeccCCCCCcCCCCCCccccEEC
Confidence             46899999999987654333367899999999999999987654     378999999875556789999999999995


Q ss_pred             eCCcEEEEEEEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        159 RTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       159 ~~~~~~lvGv~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +    +|+||+||+ ..|+..+.|.+||||+.|++||+++|+++
T Consensus       195 ~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  234 (235)
T 1ton_A          195 G----VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKEN  234 (235)
T ss_dssp             T----EEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHHHC
T ss_pred             C----EEEEEEeeCCCCCCCCCCCeEEEEHHHHHHHHHHHHccC
Confidence            3    599999999 57988788999999999999999999875

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=100.00  E-value=7.9e-39  Score=246.94  Aligned_cols=189  Identities=33%  Similarity=0.598  Sum_probs=158.7

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCC---Ccc
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE---DFL   81 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~---~~~   81 (203)
                      .++..+.|++|..+....    ..+.+.|.++++||+|+. ...+.||||||||++|+.|+++++|||||....   ...
T Consensus        46 ~~~~~~~v~~g~~~~~~~----~~~~~~v~~i~~hp~y~~-~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~  120 (242)
T 3tvj_B           46 HDASALDIRMGTLKRLSP----HYTQAWSEAVFIHEGYTH-DAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRT  120 (242)
T ss_dssp             TCSSCCEEEESCSBTTCS----CCEEEEEEEEEECTTCCT-TSCSTTCCEEEEESSCCCCBTTBCCCBCCCTTGGGGSCT
T ss_pred             CCcceEEEEeccccccCc----ccceeeEEEEEeCCCCCC-CCCCcCcEEEEEECCccccCCCEecCCcCCCcccccccC
Confidence            456789999999877643    247889999999999973 256789999999999999999999999998764   235


Q ss_pred             CceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCC-cccccCCeEEeeeeCCCCCCCcCCCCCeeEEee-
Q psy12782         82 GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI-NVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-  159 (203)
Q Consensus        82 ~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~-~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-  159 (203)
                      +..|+++|||....+.  .+..|+...+.+++.+.|...+..... ...+.+.+||++....+...|.||+||||+|.+ 
T Consensus       121 ~~~~~~~GwG~~~~~~--~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~  198 (242)
T 3tvj_B          121 DDIGTASGWGLTQRGF--LARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDS  198 (242)
T ss_dssp             TCEEEEEESCCCTTSS--CCSBCEEEEEEBCCHHHHHHHHHSTTSCTTCCCTTEEEESCTTCCSBCCTTCTTCEEEEEET
T ss_pred             CCEEEEEEeCCCCCCC--cCccceEEeeeEEcHHHHHHhhccCCcccccccCCeEEECCCCCCCccccCCCCCeEEEEeC
Confidence            8899999999876532  367899999999999999988764211 113789999998766668999999999999974 


Q ss_pred             -CCcEEEEEEEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        160 -TGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       160 -~~~~~lvGv~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                       +++|+|+||+||+ ..|+..+.|++||||+.|++||+++|++
T Consensus       199 ~~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~  241 (242)
T 3tvj_B          199 ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD  241 (242)
T ss_dssp             TTTEEEEEEEEEEEESSTTCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCcEEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence             6789999999999 7898888899999999999999999864

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=100.00  E-value=4.5e-39  Score=246.54  Aligned_cols=177  Identities=29%  Similarity=0.443  Sum_probs=150.3

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC-ccCceeEE
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED-FLGQFGWA   87 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~-~~~~~~~~   87 (203)
                      .+.|++|.++....+.  ..+.+.|.++++||+|+  ..++.||||||||++|+.|++.++|+|||..... ..+..|.+
T Consensus        49 ~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v  124 (227)
T 1iau_A           49 SINVTLGAHNIKEQEP--TQQFIPVKRPIPHPAYN--PKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSV  124 (227)
T ss_dssp             EEEEEESCSBTTSCCT--TCEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEE
T ss_pred             ceEEEEccccccCCCC--ccEEEEEEEEECCCCCC--CCCCCCCeEEEEECCcccCCCceecccCCCCCCCCCCCCEEEE
Confidence            5889999998876544  37899999999999997  4678899999999999999999999999987653 35889999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||....... .+..|+...+++++.+.|+..+...    ...+.++|++........|+||+||||+|++    +|+|
T Consensus       125 ~GwG~~~~~~~-~~~~L~~~~~~i~~~~~C~~~~~~~----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~G  195 (227)
T 1iau_A          125 AGWGQTAPLGK-HSHTLQEVKMTVQEDRKCESDLRHY----YDSTIELCVGDPEIKKTSFKGDSGGPLVCNK----VAQG  195 (227)
T ss_dssp             EESSCSSSSSC-CCSBCEEEEEEBCCHHHHHHHTTTT----CCTTTEEEESCTTSCCBCCTTCTTSEEEETT----EEEE
T ss_pred             EEcccCCCCCC-cCceeeEeeeeeechHHhhhHhccc----cCCCcEEEeECCCCCCeeeecCCCchheEee----EEEE
Confidence            99998765443 3678999999999999999876542    2445699998765567999999999999953    5999


Q ss_pred             EEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        168 IVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       168 v~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      |+||+  |...+.|.+||||+.|++||+++|++
T Consensus       196 i~S~g--c~~~~~p~vyt~v~~~~~WI~~~~~~  226 (227)
T 1iau_A          196 IVSYG--RNNGMPPRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             EEEEE--CTTSCSCEEEEEGGGGHHHHHHHHHC
T ss_pred             EEeEe--cCCCCCCeEEEEHHHHHHHHHHHHhh
Confidence            99998  77667799999999999999999975

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=100.00  E-value=5.4e-39  Score=245.69  Aligned_cols=178  Identities=29%  Similarity=0.553  Sum_probs=152.2

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWA   87 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~   87 (203)
                      +.+.|++|..+...  .  ..+.+.|.++++||+|+  ..+..||||||+|++|+.|++.++|+|||.... ..+..|++
T Consensus        45 ~~~~v~~G~~~~~~--~--~~~~~~v~~~~~Hp~y~--~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~-~~~~~~~v  117 (224)
T 2qxi_A           45 NEYTVHLGSDTLGD--R--RAQRIKASKSFRHPGYS--TQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCE-PPGTTCTV  117 (224)
T ss_dssp             SCEEEEESCSBTTC--T--TSEEEEECEEEECTTCC--TTTCTTCCEEEECSSCCCCBTTBCCCCCCSSCC-CTTCEEEE
T ss_pred             CCcEEEEeeeecCC--C--ccEEEEEEEEEECCCCC--CCCCcCcEEEEEeCCCCcCCCceeeEECCCCCC-CCCCEEEE
Confidence            56889999987752  1  37889999999999997  467889999999999999999999999998764 46899999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||.........+..|+..++++++.++|...+..     .+.+.+||++......+.|.||+||||++++    +|+|
T Consensus       118 ~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~G  188 (224)
T 2qxi_A          118 SGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVYKD-----LLENSMLCAGIPDSKKNACNGDSGGPLVCRG----TLQG  188 (224)
T ss_dssp             EESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHHGG-----GCCTTEEEEECTTCCCBCCTTCTTCEEEETT----EEEE
T ss_pred             EeCCccCCCCCCCChhheEEEeeecCHHHhhHHhcC-----cCCCCeEEecCCCCCCccCCCCccccEEECC----EEEE
Confidence            999987543323367899999999999999987754     3789999998655567899999999999954    4999


Q ss_pred             EEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        168 IVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       168 v~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |+||+ ..|+..+.|.+||||++|++||+++|+.+
T Consensus       189 i~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  223 (224)
T 2qxi_A          189 LVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKKH  223 (224)
T ss_dssp             EEEECCSSSCCTTCCEEEEEGGGSHHHHHHHHHHT
T ss_pred             EEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHhcc
Confidence            99999 68987788999999999999999999864

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=2.9e-39  Score=247.36  Aligned_cols=179  Identities=31%  Similarity=0.587  Sum_probs=150.0

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCC-CCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYF-KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW   86 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y-~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~   86 (203)
                      ..+.|++|.++......  ..+.+.|.++++||+| +.+.....||||||||++|+.|++.++|+|||.... ..+..|.
T Consensus        45 ~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~-~~~~~~~  121 (225)
T 1npm_A           45 QKYSVRLGDHSLQSRDQ--PEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCP-KVGQKCI  121 (225)
T ss_dssp             SSCEEEESCSBTTC--C--CCEEECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSCC-CTTCEEE
T ss_pred             CCceEEEeeeEcCCCCC--CcEEEEEEEEEECCCCCCCCccCccccEEEEeeCCcccCCCceeceECCCCCC-CCCCEEE
Confidence            46889999988776544  3789999999999999 533367889999999999999999999999998763 4689999


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ++|||.........+..|+...+++++.+.|+..+..     .+.+.+||++... +.+.|.||+||||++++    +|+
T Consensus       122 v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~-~~~~C~GDSGgPL~~~~----~l~  191 (225)
T 1npm_A          122 ISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPG-----KITEGMVCAGSSN-GADTCQGDSGGPLVCDG----MLQ  191 (225)
T ss_dssp             EEESSCSSSSSCCCCSBCEEEEEEECCHHHHHHHSTT-----TCCTTEEEEECTT-CCBCCTTCTTCEEEETT----EEE
T ss_pred             EEeCCcccCCCCCCCccceEeEEeeecHHHhhHHhCC-----CCCCCEEeecCCC-CCeecCCCCCchheECC----EEE
Confidence            9999987433223367899999999999999987754     3789999998654 57899999999999953    499


Q ss_pred             EEEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        167 GIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       167 Gv~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      ||+||+ ..|+..+.|.+||||+.|++||+++|+
T Consensus       192 GI~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~  225 (225)
T 1npm_A          192 GITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             EEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             EEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            999999 578877889999999999999999874

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=100.00  E-value=1.7e-39  Score=250.83  Aligned_cols=187  Identities=28%  Similarity=0.551  Sum_probs=154.1

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCC--CCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADR--YDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~--~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      ...+.|++|.++.....+....+.+.|.++++||+|+.  ....  ||||||+|++|+.|+++++|+|||...... .+.
T Consensus        48 ~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~--~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~  125 (240)
T 1fon_A           48 SRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNS--NCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEA  125 (240)
T ss_dssp             TSCEEEEEEEEETTEEEEEEEEEEECTTSEEECTTCCT--TCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTC
T ss_pred             CCceEEEeeeeeccccCCCceeEeeeeeEEEECCCCcC--CCccCCCCEEEEEecCccccCCcccccCCCCcccCCCCCC
Confidence            46789999999877543321127889999999999984  4455  999999999999999999999999876433 578


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee-CCc
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-TGR  162 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-~~~  162 (203)
                      .|+++|||....+.. .+..|+...+++++.+.|...+..   ...+.+.+||++..  +...|.||+||||+|.. +++
T Consensus       126 ~~~v~GwG~~~~~~~-~~~~L~~~~~~~~~~~~C~~~~~~---~~~~~~~~~Ca~~~--~~~~C~GDsGgPL~~~~~~~~  199 (240)
T 1fon_A          126 PCYISGWGRLYTGGP-LPDKLQQALLPTVDYEHCSQWDWW---GITVKKTMVCAGGD--TRSGCNGDSGGPLNCPAADGS  199 (240)
T ss_dssp             CCEEEECTTCCCSSS-CCSBCEEEECCEECHHHHTSTTTT---GGGCCTTEEEECCS--SSCSTTSCTTCEEEEECSSSC
T ss_pred             eEEEEEEeEcCCCCC-CChhheEEEEeeeCHHHhccceec---CCccccceEeecCC--CCcccCCCCCCeEEeEcCCCC
Confidence            899999998765443 367899999999999999875321   12478999999843  37899999999999976 789


Q ss_pred             EEEEEEEEecC--CCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        163 WFLIGIVSAGY--SCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       163 ~~lvGv~s~~~--~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |+|+||+||+.  .|+..+.|.+||||+.|++||+++|+.+
T Consensus       200 ~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  240 (240)
T 1fon_A          200 WQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIASN  240 (240)
T ss_dssp             EEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHHHHC
T ss_pred             EEEEEEEEEcCCCCCCCCCCCcEEEEhHHHHHHHHHHHhcC
Confidence            99999999986  7887788999999999999999999753

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=100.00  E-value=3.4e-39  Score=248.69  Aligned_cols=182  Identities=32%  Similarity=0.537  Sum_probs=152.6

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCC---------CCCCCCeEEEEECCCcCCCCCccceecCCCCC
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTP---------QADRYDVAVLRLDRPVQYMPHIAPICLPEKGE   78 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~---------~~~~~DiALl~L~~~~~~~~~i~picl~~~~~   78 (203)
                      +.+.|++|..+......  ..+.+.|.++++||+|+...         ..+.||||||+|++|+.|++.++|+|||....
T Consensus        45 ~~~~v~~G~~~~~~~~~--~~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~  122 (237)
T 1ao5_A           45 DQYEVWLGKNKLFQEEP--SAQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEP  122 (237)
T ss_dssp             SSCEEEESCCBSSSCCS--SCEECCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCC
T ss_pred             CCCEEEecccccccCCC--CcEEEEEEEEEcCCCcCcccccccccccccCCCCCEEEEEeCCccccCCceeCCCcCCCCC
Confidence            46889999988765444  37889999999999997321         12389999999999999999999999998764


Q ss_pred             CccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEe
Q psy12782         79 DFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME  158 (203)
Q Consensus        79 ~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~  158 (203)
                       ..+..|.++|||.........+..|+...+++++.++|...+..     .+.+.|||++....+.+.|.||+||||+|+
T Consensus       123 -~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~  196 (237)
T 1ao5_A          123 -KPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQ-----KVTDVMLCAGEMGGGKDTCRDDSGGPLICD  196 (237)
T ss_dssp             -CTTCEEEEEESCCSSCC-CCCCSBCEEEEEEEECHHHHHHHCSS-----CCCTTEEEEECTTCSCBCCTTCTTCEEEET
T ss_pred             -CCCCEEEEEECCccCCCCCCCCCcccEEEEEecChhHhhhhhcc-----cCCCCEEEEccCCCCCCCCCCCCcceEEEC
Confidence             46899999999987765323367899999999999999987653     378999999844455789999999999995


Q ss_pred             eCCcEEEEEEEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        159 RTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       159 ~~~~~~lvGv~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +    +|+||+||+ ..|+..+.|.+||||+.|++||+++|+.+
T Consensus       197 ~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~n  236 (237)
T 1ao5_A          197 G----ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMKN  236 (237)
T ss_dssp             T----EEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHHHC
T ss_pred             C----EEeEEEeEcCCCCCCCCCCcEEEEHHHHHHHHHHHHhhc
Confidence            3    599999999 68988788999999999999999999865

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=100.00  E-value=1.3e-39  Score=263.52  Aligned_cols=165  Identities=26%  Similarity=0.583  Sum_probs=143.0

Q ss_pred             ceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEE
Q psy12782         28 AYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAV  107 (203)
Q Consensus        28 ~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~  107 (203)
                      .+.+.|+++++||+|+      .||||||||++|+.|+++++|||||.......+..++++|||....+.  .+..|+.+
T Consensus       169 ~~~~~V~~i~~HP~y~------~nDIALlkL~~~v~~~~~v~PicLp~~~~~~~g~~~~v~GWG~~~~~~--~s~~L~~~  240 (347)
T 4f4o_C          169 KQEVEIEKVIFHPDNS------TVDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRNANLN--FTEHLKYV  240 (347)
T ss_dssp             TEEECEEEEEECSCTT------TCCCEEEEESSCCCCSSSCCCCBCCSSCCCCTTCEEEEEECSBCTTSS--BCSSCEEE
T ss_pred             eEEEEEEEEEECcCCC------CCCEEEEEECCCccCCCceeeeecCccccCCCCcEEEEeccccCCCCC--CCccceEE
Confidence            7889999999999885      479999999999999999999999988765578999999999876554  36789999


Q ss_pred             EEeeeChhhHhhHhhhCC------------CcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee--CCcEEEEEEEEecC
Q psy12782        108 DVPIIDNRQCERWHKSNG------------INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER--TGRWFLIGIVSAGY  173 (203)
Q Consensus       108 ~~~~~~~~~C~~~~~~~~------------~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~--~~~~~lvGv~s~~~  173 (203)
                      .+++++.+.|.+.+....            ....++++||||+....+.+.|+||+||||++.+  +++|+|+||+||+.
T Consensus       241 ~v~iv~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv~~~~~~~~~~lvGIvS~G~  320 (347)
T 4f4o_C          241 MLPVADQEKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYAAGILSFDK  320 (347)
T ss_dssp             EEEEECHHHHHHHHSSCSSGGGCCCCCSSSSCCCCSTTEEEECCCTTCCCCCTTCTTCEEEEEETTTTEEEEEEEEEECC
T ss_pred             EEEEeCHHHHHHHhccccccccccccccccccccccCCeEEecCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEEEeCC
Confidence            999999999998775421            1234788999998777778999999999999964  67899999999999


Q ss_pred             CCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        174 SCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       174 ~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      .|+. ..|++||||+.|++||+++|++|
T Consensus       321 ~C~~-~~pgVYTrVs~y~~WI~~~i~~N  347 (347)
T 4f4o_C          321 SCRT-AEYGVYVRVTSILDWIQTTIADN  347 (347)
T ss_dssp             CTTT-SSCEEEEEHHHHHHHHHHHHTC-
T ss_pred             CCCC-CCCeEEEEHHHHHHHHHHHHHcC
Confidence            9975 56999999999999999999864

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=100.00  E-value=8.7e-39  Score=251.45  Aligned_cols=193  Identities=32%  Similarity=0.504  Sum_probs=163.5

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCc----CCCCCccceecCCCCCCc
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV----QYMPHIAPICLPEKGEDF   80 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~----~~~~~i~picl~~~~~~~   80 (203)
                      .....+.|++|..+++...+.  .+.+.|.++++||+|+.......+|||||+|+.++    .++..++|+|||......
T Consensus        75 ~~~~~~~v~~g~~~~~~~~~~--~~~~~v~~i~~Hp~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~~~  152 (276)
T 2vnt_A           75 PKKEDYIVYLGRSRLNSNTQG--EMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDP  152 (276)
T ss_dssp             CCGGGEEEEESCCBSSSCCTT--CEEEEEEEEEECTTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSCCC
T ss_pred             CCCccEEEEeeeeeccCCCCc--eEEEEEEEEEEccccccccccccchhhhhhhhccccccccCcccccccccccccccc
Confidence            345678899999988876664  89999999999999986555667999999998765    588999999999876544


Q ss_pred             -cCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee
Q psy12782         81 -LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER  159 (203)
Q Consensus        81 -~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~  159 (203)
                       .+..|.++|||............++...+.+++.+.|...+...   ....+.++|+.......+.|.||+||||++..
T Consensus       153 ~~~~~~~~~g~G~~~~~~~~~~~~l~~~~~~i~~~~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~  229 (276)
T 2vnt_A          153 QFGTSCEITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYG---SEVTTKMLCAADPQWKTDSCQGDSGGPLVCSL  229 (276)
T ss_dssp             CTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHTSTTTTG---GGSCTTEEEEECTTSCCCCCTTCTTCEEEEEE
T ss_pred             cccceEEEEEeeccccCCCCcchhheeeeeeEecHHHhhhhhccC---cccCccceeeccCCCCCCCCCCCCCCeEEEee
Confidence             57899999999887666555788999999999999998765432   13567788887666678999999999999999


Q ss_pred             CCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        160 TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       160 ~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      +++|+|+||+||+..|+..+.|++||||++|++||+++|+++.
T Consensus       230 ~~~~~lvGIvS~G~~C~~~~~P~vyt~V~~y~~WI~~~~~~~n  272 (276)
T 2vnt_A          230 QGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHTKEEN  272 (276)
T ss_dssp             TTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHSCC-
T ss_pred             CCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhhhhc
Confidence            9999999999999999988999999999999999999998754

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=100.00  E-value=6.2e-39  Score=247.24  Aligned_cols=181  Identities=31%  Similarity=0.572  Sum_probs=152.4

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCC---------CCCCCeEEEEECCCcCCCCCccceecCCCCCC
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQ---------ADRYDVAVLRLDRPVQYMPHIAPICLPEKGED   79 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~---------~~~~DiALl~L~~~~~~~~~i~picl~~~~~~   79 (203)
                      ...|++|.++....++.  .+.+.|.++++||+|+....         ...||||||+|++|+.|++.++|+|||.... 
T Consensus        46 ~~~v~~G~~~~~~~~~~--~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~Lp~~~~-  122 (237)
T 2zch_P           46 KSVILLGRHSLFHPEDT--GQVFQVSHSFPHPLYDMSLLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEP-  122 (237)
T ss_dssp             SCEEEESCSBSSSCCTT--CEEEEEEEEEECTTSCGGGGTSSSCCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCSSCC-
T ss_pred             CceEEEecccccCCCCC--cEEEEEEEEecCCCcchhhhcccccccCCCCCcceEEEEeCCCCccCCcEeeeECCCCCC-
Confidence            35799999887765543  78999999999999973211         1278999999999999999999999998753 


Q ss_pred             ccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee
Q psy12782         80 FLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER  159 (203)
Q Consensus        80 ~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~  159 (203)
                      ..+..|+++|||.........+..|+..++++++.+.|...+..     .+++.|||++....+.+.|.||+||||+|+.
T Consensus       123 ~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~  197 (237)
T 2zch_P          123 ALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQVHPQ-----KVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG  197 (237)
T ss_dssp             CTTCEEEEEESCCSSSSSCCCCSBCEEEEEEEECHHHHHHHCSS-----BCCTTEEEEECTTCSCBCCTTCTTCEEESSS
T ss_pred             CCCCEEEEEeCCccCCCCCcCCcccEEeEEEEeCHHHhcccccC-----CCCceEEeecCCCCCCcccCCCccCeEEECC
Confidence            46889999999987765443367899999999999999987653     3788999998765667899999999999965


Q ss_pred             CCcEEEEEEEEecC-CCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        160 TGRWFLIGIVSAGY-SCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       160 ~~~~~lvGv~s~~~-~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                          +|+||+||+. .|+..+.|.+||||++|++||+++|+.+
T Consensus       198 ----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~  236 (237)
T 2zch_P          198 ----VLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIVAN  236 (237)
T ss_dssp             ----SEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             ----EEEEEEEeCcCCCCCCCCCcEEEEHHHHHHHHHHHHhcC
Confidence                4999999998 6987788999999999999999999865

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=8.1e-39  Score=245.16  Aligned_cols=178  Identities=30%  Similarity=0.467  Sum_probs=148.7

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC-ccCceeEE
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED-FLGQFGWA   87 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~-~~~~~~~~   87 (203)
                      .+.|++|.++....+.  ..+.+.|.++++||+|+  ..++.||||||||++|+.|+++++|||||..... ..+..|.+
T Consensus        49 ~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v  124 (227)
T 1euf_A           49 SINVTLGAHNIMERER--TQQVIPVRRPIPHPDYN--DETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSV  124 (227)
T ss_dssp             EEEEEESCSBTTSCCT--TCEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEE
T ss_pred             CcEEEEcccccCCCCC--ccEEEEEEEEEeCCCCC--CCCCcCceEEEEECCcCcCCCceeccCCCCccccCCCCCEEEE
Confidence            5889999988776444  37899999999999997  4678899999999999999999999999987543 36889999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||........ +..|+...+++++.+.|...+..     .+.+.+||++........|.||+||||+|++    +|+|
T Consensus       125 ~GwG~~~~~~~~-~~~L~~~~~~i~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~~~GDsGgPL~~~~----~l~G  194 (227)
T 1euf_A          125 AGWGRLGVNMPS-TDKLQEVDLEVQSEEKCIARFKN-----YIPFTQICAGDPSKRKNSFSGDSGGPLVCNG----VAQG  194 (227)
T ss_dssp             EESCBSSTTCCB-CSBCEEEEEEBCCTHHHHTTCTT-----CCTTTEEEESCTTSCCBCCTTCTTCEEEETT----EEEE
T ss_pred             EEEccCCCCCCC-chhheEeEeccccHHHhhHhhcC-----cCCCcEEEccCCCCCCcccccCCCCceEECC----EEEE
Confidence            999987654432 67899999999999999986653     3788999998654435678999999999954    5999


Q ss_pred             EEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        168 IVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       168 v~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      |+||+  |+..+.|.+||||+.|++||+++|+..|
T Consensus       195 i~S~g--c~~~~~p~vyt~V~~y~~WI~~~~~~~k  227 (227)
T 1euf_A          195 IVSYG--RNDGTTPDVYTRISSFLSWIHSTMRRYK  227 (227)
T ss_dssp             EEEEC--CTTCCSCEEEEEGGGTHHHHHHHTC---
T ss_pred             EEEEe--CCCCCCCeEEEEHHHhHHHHHHHHhhcC
Confidence            99998  7766789999999999999999998653

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=100.00  E-value=3.2e-39  Score=266.31  Aligned_cols=185  Identities=31%  Similarity=0.577  Sum_probs=156.7

Q ss_pred             CceeEEEeeeeeecccCC----------CCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCC
Q psy12782          7 ARQVQVTLGDYVINSAVE----------PLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEK   76 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~----------~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~   76 (203)
                      .+.+.|++|+++.....+          ..+.+.+.|.++++||+|+  ..++.||||||+|++|+.|+++++|||||..
T Consensus       170 ~~~~~V~lG~~~~~~~~~~~~~~~~~~c~~~~~~~~V~~ii~Hp~y~--~~~~~nDIALL~L~~~v~~~~~V~PICLp~~  247 (408)
T 2xxl_A          170 NDLYEIRLGEHRISTEEDCRQQGRKKKCAPPVVNVGIEKHLIHEKYD--ARHIMHDIALLKLNRSVPFQKHIKPICLPIT  247 (408)
T ss_dssp             TTEEEEEESCSBTTCSCCEEEETTEEEECCCCEEEEEEEEEECTTCB--TTTTBSCCEEEEESSCCCCBTTBCCCBCCCS
T ss_pred             CceEEEEeeeeECCCccchhhcccccccCCceEEEeEEEEEeCCCCC--ccccccceEEEEECCccccccCccccCCCCc
Confidence            467899999998876543          2357889999999999998  4578899999999999999999999999976


Q ss_pred             CC----CccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCC
Q psy12782         77 GE----DFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG  152 (203)
Q Consensus        77 ~~----~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G  152 (203)
                      ..    ...+..|+++|||....+.  .+..|+++.+.+++.+.|+..+...     +...+||++... +.+.|+||+|
T Consensus       248 ~~~~~~~~~~~~~~v~GWG~t~~~~--~s~~L~~~~v~iv~~~~C~~~~~~~-----~~~~~iCAg~~~-g~d~C~GDSG  319 (408)
T 2xxl_A          248 DELKEKAEQISTYFVTGWGTTENGS--SSDVLLQANVPLQPRSACSQAYRRA-----VPLSQLCVGGGD-LQDSCKGDSG  319 (408)
T ss_dssp             HHHHHHTTTCSEEEEEECCCBTTBC--SCSBCEEEEEEEECHHHHHHHHTSC-----CCTTEEEECCSC-SSSGGGSCTT
T ss_pred             ccccccccCCCEEEEEEeCcCCCCC--CCchheEeeeeecCHHHHHHHhccc-----CCCceEeecCCC-CCccCCCccc
Confidence            42    2357899999999876554  3678999999999999999887643     456999998654 5789999999


Q ss_pred             CeeE------EeeCCcEEEEEEEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        153 GPLM------MERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       153 ~pl~------~~~~~~~~lvGv~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |||+      +..+++|+|+||+||| ..|+..+.|++||||+.|++||+++|+.+
T Consensus       320 GPL~~~~~~~~~~~~~~~l~GIvS~G~~~Cg~~~~PgVYTrVs~y~~WI~~~i~~~  375 (408)
T 2xxl_A          320 GPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYVQWITDTMASN  375 (408)
T ss_dssp             CEEEEEECCTTCSSCEEEEEEEEEECCCCTTSCCCCEEEEEGGGGHHHHHHHHHHH
T ss_pred             ChhhcCccceEEECCEEEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHhhc
Confidence            9994      4446789999999999 68988888999999999999999999754

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=100.00  E-value=2.3e-39  Score=260.78  Aligned_cols=187  Identities=32%  Similarity=0.643  Sum_probs=152.2

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCC-CCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFT-PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      .+..+.|++|.++.....+   .+.+.|.++++||+|+.. ...+.||||||+|++|+.|+++++|||||...... .+.
T Consensus       139 ~~~~~~V~~G~~~~~~~~~---~~~~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~g~  215 (329)
T 1md8_A          139 SNASLDVFLGHTNVEELMK---LGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGL  215 (329)
T ss_dssp             --CCCCEEESCSBHHHHHH---HCCCCEEEEEECSSCCSSCTTCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTC
T ss_pred             CCceEEEEecccccccccc---ccceeeEEEEECCCcccccCCCCCccEEEEEECCcccCCCceEccccCCCccccCCCC
Confidence            4567889999987654322   356789999999999742 23678999999999999999999999999765432 578


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEe--eCC
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME--RTG  161 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~--~~~  161 (203)
                      .|+++|||.....   .+..|+.+.+.+++.+.|...+........++++|||++....+.+.|+||+||||++.  .++
T Consensus       216 ~~~v~GWG~t~~~---~~~~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~~~~~  292 (329)
T 1md8_A          216 MGYVSGFGVMEEK---IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD  292 (329)
T ss_dssp             EEEEEECCBCSSS---BCSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCSCBCCTTTTTCEEEEEETTTT
T ss_pred             EEEEEeCCCCCCC---CCccceEEEEEEcCHHHHHHHhhcccccccCCCCeEeeecCCCCCcCCCCccccceEEEECCCC
Confidence            8999999987654   26789999999999999998765422222478999999866556799999999999995  357


Q ss_pred             cEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        162 RWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       162 ~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      +|+|+||+||+..|+.  .|++||||+.|++||+++|++
T Consensus       293 ~~~l~GIvS~G~~C~~--~~gvyT~V~~y~~WI~~~i~~  329 (329)
T 1md8_A          293 RWVATGIVSWGIGCSR--GYGFYTKVLNYVDWIKKEMEE  329 (329)
T ss_dssp             EEEEEEEEEECSSSSS--SCEEEEEGGGTHHHHHHHHHC
T ss_pred             cEEEEEEEEECCCcCC--CCcEEEEHHHHHHHHHHHHhC
Confidence            8999999999999974  489999999999999999863

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=100.00  E-value=1.5e-38  Score=243.04  Aligned_cols=177  Identities=29%  Similarity=0.551  Sum_probs=150.9

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWA   87 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~   87 (203)
                      +.+.|++|..+.....+. ..+.+.|.++++||+|+  ...+.||||||||++|+.|++.++|+|||.... ..+..|.+
T Consensus        45 ~~~~v~~g~~~~~~~~~~-~~~~~~v~~~~~Hp~y~--~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~-~~~~~~~v  120 (223)
T 2bdg_A           45 NSYTIGLGLHSLEADQEP-GSQMVEASLSVRHPEYN--RPLLANDLMLIKLDESVSESDTIRSISIASQCP-TAGNSCLV  120 (223)
T ss_dssp             SSEEEEESCSBSCGGGCT-TCEEEEEEEEEECTTTT--SSTTCSCCEEEEESSCCCCCSSCCCCCBCSSCC-CTTCEEEE
T ss_pred             CCeEEEEeeeecCCCCCC-CcEEEEEEEEEeCCCCC--CCCCcCcEEEEEECCcccCCCceecccCCCCCC-CCCCEEEE
Confidence            357899999887643222 36889999999999997  467889999999999999999999999998753 46889999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||....+.  .+..|+..++++++.+.|...+..     .+.+.|||++....+...|.||+||||+|++    +|+|
T Consensus       121 ~GwG~~~~~~--~~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~----~l~G  189 (223)
T 2bdg_A          121 SGWGLLANGR--MPTVLQCVNVSVVSEEVCSKLYDP-----LYHPSMFCAGGGQDQKDSCNGDSGGPLICNG----YLQG  189 (223)
T ss_dssp             EESCCCTTSC--CCSBCEEEEEEBCCHHHHHHHSTT-----TCCTTEEEECCSTTCCBCCTTCTTCEEEETT----EEEE
T ss_pred             EeCcccCCCC--CCCcceEEEEEEeCHHHhhhhhCC-----CCCCCeEeccCCCCCCCcCCCCCCchheEcc----EEEE
Confidence            9999876542  367899999999999999987654     3789999998655567899999999999964    5999


Q ss_pred             EEEecC-CCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        168 IVSAGY-SCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       168 v~s~~~-~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      |+||+. .|+..+.|.+||||+.|++||+++|+
T Consensus       190 i~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  222 (223)
T 2bdg_A          190 LVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ  222 (223)
T ss_dssp             EEEECCSSTTCTTCCEEEECGGGTHHHHHHHHH
T ss_pred             EEEecCCCCCCCCCCcEEEEHHHhHHHHHHHhc
Confidence            999997 69887889999999999999999986

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=100.00  E-value=1.6e-38  Score=243.31  Aligned_cols=179  Identities=30%  Similarity=0.509  Sum_probs=154.2

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCcee
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFG   85 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~   85 (203)
                      .+.+.|++|.++.....+.  .+.+.|.++++||+|+  .....||||||+|++|+.+++.++|+|||...... .+..|
T Consensus        48 ~~~~~v~~G~~~~~~~~~~--~~~~~v~~~~~hp~y~--~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~  123 (227)
T 3fzz_A           48 GRSMTVTLGAHNIKAKEET--QQIIPVAKAIPHPDYN--PDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDEC  123 (227)
T ss_dssp             CEEEEEEESCSBTTSCCTT--CEEEEEEEEEECTTCB--TTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEE
T ss_pred             CCCcEEEEcccccCCCCCC--ceEEEEEEEEECcCCC--CCCCcCCEEEEEECCcCCCCCcccccCCCCcccCCCCCCEE
Confidence            3568999999988775553  7899999999999997  46788999999999999999999999999877543 68999


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFL  165 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~l  165 (203)
                      .++|||........ +..|+...+.+++.+.|...+...    ...+.++|++........|.||+||||+|..    +|
T Consensus       124 ~v~GwG~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~----~l  194 (227)
T 3fzz_A          124 YVAGWGKVTPDGEF-PKTLHEVKLTVQKDQVCESQFQSS----YNRANEICVGDSKIKGASFEEDSGGPLVCKR----AA  194 (227)
T ss_dssp             EEEESSCSSTTSCC-CSBCEEEEEEBCCHHHHHHHHTTT----CCTTTEEEECCCSSCBCCTTTTTTCEEEETT----EE
T ss_pred             EEEECCcccCCCCC-CCeeeEEEeeeecHHHhhhhhccc----cCCCceEEEeCCCCCCcccccCCccceEEec----CC
Confidence            99999987665533 678999999999999999876543    3578999998766668899999999999964    59


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        166 IGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       166 vGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      +||+||+..|+..  |.+||||+.|++||+++|++
T Consensus       195 ~Gi~S~g~~c~~~--p~vyt~V~~~~~WI~~~i~~  227 (227)
T 3fzz_A          195 AGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTMKH  227 (227)
T ss_dssp             EEEEEECCTTCSS--SEEEEEGGGTHHHHHHHHTC
T ss_pred             cEEEEECCCCCCC--CeEEEEhHHhHHHHHHHHhC
Confidence            9999999988764  99999999999999999874

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=100.00  E-value=1.5e-38  Score=246.58  Aligned_cols=181  Identities=30%  Similarity=0.569  Sum_probs=152.1

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      .+..+.|++|.++......  ..+.+.|.+++.||.        .||||||||++|+.|+++++|+|||...... .+..
T Consensus        66 ~~~~~~v~~G~~~~~~~~~--~~~~~~v~~~~~hp~--------~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~  135 (247)
T 1ddj_A           66 RPSSYKVILGAHQEVNLEP--HVQEIEVSRLFLEPT--------RKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTE  135 (247)
T ss_dssp             CGGGCEEEESCSBSSSCCT--TCEEEEEEEEEECTT--------SCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCE
T ss_pred             CCccEEEEEcccccCccCC--ceEEEEeeeEEcCCC--------CCcEEEEEeCCceeeCCCEEeeecCCcccCCCCCCE
Confidence            3567999999987665433  378899999999995        3599999999999999999999999875433 5789


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |+++|||......  .+..|+...+++++.+.|......   ...+.+.+||++....+.+.|+||+||||++..+++|+
T Consensus       136 ~~v~GwG~~~~~~--~~~~L~~~~~~i~~~~~C~~~~~~---~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~  210 (247)
T 1ddj_A          136 CFITGWGETQGTF--GAGLLKEAQLPVIENKVCNRYEFL---NGRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYI  210 (247)
T ss_dssp             EEEEECCCCSSST--TTTBCEEEEEEEECHHHHTSTTTT---TTCCCTTEEEESCSSSCCCBCCSCTTCEEEEECSSSEE
T ss_pred             EEEEEcccCCCCC--CCccceEEeeeecCHHHhcchhcc---CCCCcCCeEeecCCCCCCccccCcCcCcEEEEECCcEE
Confidence            9999999876432  256899999999999999874221   11378899999865556789999999999999889999


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |+||+||+..|+..+.|.+||||+.|++||+++|+.+
T Consensus       211 l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~n  247 (247)
T 1ddj_A          211 LQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRNN  247 (247)
T ss_dssp             EEEEECGGGCCBBTTBCEEEEEGGGSHHHHHHHHHTC
T ss_pred             EEEEEEECCCCCCCCCCEEEEEhHHhHHHHHHHhhcC
Confidence            9999999999988788999999999999999999753

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.9e-39  Score=268.23  Aligned_cols=191  Identities=31%  Similarity=0.652  Sum_probs=158.1

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC----c
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED----F   80 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~----~   80 (203)
                      ..+..+.|++|.++....... ..+.+.|.++++||+|+. ...+.||||||+|++|+.|+++|+|||||.....    .
T Consensus       219 ~~~~~~~V~lG~~~~~~~~~~-~~~~~~V~~ii~Hp~y~~-~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~  296 (424)
T 3nxp_A          219 FTENDLLVRIGKHSRTRYERN-IEKISMLEKIYIHPRYNW-RENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQ  296 (424)
T ss_dssp             CCGGGEEEEESCCBSSSCCTT-TCEEECEEEEEECTTCBT-TTTSBTCCEEEEESSCCCCCSSCCCCBCCCHHHHHHHHH
T ss_pred             cCcccEEEEeCcccccccCCC-ceeEEEEEEEEeCCCCCC-CCCCcCCeEEEEecCccccCCcccccCCCCccccccccc
Confidence            356789999999988764332 367788999999999973 4567899999999999999999999999986531    2


Q ss_pred             cCceeEEeecccccCC-----CCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeC---CCCCCCcCCCC
Q psy12782         81 LGQFGWAAGWGALQAG-----SRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRG---GAKDSCQGDSG  152 (203)
Q Consensus        81 ~~~~~~~~Gwg~~~~~-----~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~---~~~~~c~~d~G  152 (203)
                      .+..|+++|||.....     ....+..|+.+.+.+++.+.|...+..     .+++.|||++...   ...+.|+||+|
T Consensus       297 ~g~~~~v~GWG~t~~~~~~~~~~~~~~~L~~~~v~ii~~~~C~~~~~~-----~i~~~~iCAg~~~~~~~~~d~C~GDSG  371 (424)
T 3nxp_A          297 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDSTRI-----RITDNMFCAGYKPDEGKRGDACEGDSG  371 (424)
T ss_dssp             HCSEEEEEESSHHHHHHHHC----CCSBCEEEEEEBCCHHHHHHTCSS-----CCCTTEEEESCCCBTTBCCCTTCSCTT
T ss_pred             CCCeEEEEecCCCCccCccccCCCCCccceEEEeeEEcHHHhhhhccC-----cCCCCeEecccCCCCCCCCccCCCcCC
Confidence            5889999999975421     112257899999999999999987643     4889999998542   23589999999


Q ss_pred             CeeEEee--CCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        153 GPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       153 ~pl~~~~--~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      |||+|..  +++|+|+||+||+..|+..+.|++||||+.|++||+++|+...
T Consensus       372 GPLv~~~~~~~~~~l~GIvS~G~~C~~~~~pgVyT~Vs~y~~WI~~~i~~~g  423 (424)
T 3nxp_A          372 GPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQKVIDQFG  423 (424)
T ss_dssp             CEEEEECTTTCCEEEEEEECCSSCTTTCCSCEEEEECTTCHHHHHHHHHHHC
T ss_pred             CceEEEECCCCcEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHHHhc
Confidence            9999986  7899999999999999988899999999999999999998754

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=3.4e-39  Score=249.19  Aligned_cols=182  Identities=30%  Similarity=0.529  Sum_probs=138.4

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCC---------CCCCCCCeEEEEECCCcCCCCCccceecCCCCC
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFT---------PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE   78 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~---------~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~   78 (203)
                      +.+.|++|..++.....  ..+.+.|.++++||+|+..         ...+.||||||+|++|+.|+++++|||||....
T Consensus        48 ~~~~v~~G~~~~~~~~~--~~~~~~v~~~~~Hp~y~~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~  125 (240)
T 1sgf_A           48 DKYQVWLGKNNFLEDEP--SDQHRLVSKAIPHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEP  125 (240)
T ss_dssp             SCCEEEECC----C-CT--TCEEEEEEEEEECTTSCGGGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCC
T ss_pred             CCceEEeCCcccccCCC--CceEEEEEEEEcCCCCcccccccccccccCCCCCceEEEEeCCcCcCCCcccccCCCCCCC
Confidence            46889999988765433  3788999999999999732         226789999999999999999999999998764


Q ss_pred             CccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEe
Q psy12782         79 DFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME  158 (203)
Q Consensus        79 ~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~  158 (203)
                       ..+..|.++|||.........+..|+...+++++.++|...+..     .+.+.+||++....+...|.||+||||+++
T Consensus       126 -~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~  199 (240)
T 1sgf_A          126 -KLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEM-----KVTDAMLCAGEMDGGSYTCEHDSGGPLICD  199 (240)
T ss_dssp             -CTTCEEEEC-------C---------CEEEEEECTHHHHTTCSS-----BCCTTEEEEEECSSSEEECCCCTTCEEEET
T ss_pred             -CCCCEEEEEecCCCCCCCCCCCccccEEeeeEeCHHHhhhhhCC-----CcCCCeEeEccCCCCCCCCCCCCcCcEEEc
Confidence             46899999999987654333367899999999999999886543     378999999876566789999999999995


Q ss_pred             eCCcEEEEEEEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        159 RTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       159 ~~~~~~lvGv~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +    +|+||+||+ ..|+..+.|.+||||+.|++||+++|+.+
T Consensus       200 ~----~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~  239 (240)
T 1sgf_A          200 G----ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANN  239 (240)
T ss_dssp             T----EEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHHHSC
T ss_pred             c----EEEEEEEECCCCCCCCCCCeEEEeHHHHHHHHHHHHhcC
Confidence            3    599999999 57987788999999999999999999865

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=100.00  E-value=1.6e-38  Score=244.58  Aligned_cols=184  Identities=31%  Similarity=0.557  Sum_probs=152.0

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC-ccCceeE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED-FLGQFGW   86 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~-~~~~~~~   86 (203)
                      ..+.|++|.+++...+.  ..+.+.|.++++||+|+  ..+..||||||+|++|+.|+++++|+|||..... ..+..|.
T Consensus        46 ~~~~v~~G~~~~~~~~~--~~~~~~v~~~~~Hp~y~--~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~  121 (234)
T 1orf_A           46 KRSQVILGAHSITREEP--TKQIMLVKKEFPYPCYD--PATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQ  121 (234)
T ss_dssp             TTCEEEESCSBSSSCCT--TCEEECEEEEEECTTCC--TTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEE
T ss_pred             CCceEEEeccccCcCCC--ceEEEEEEEEEcCCCCC--CCCCCCCEEEEEECCcCccCCCeeeeecCCCcCCCCCCCEEE
Confidence            46889999988776544  37899999999999997  4678999999999999999999999999987653 3688999


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ++|||....... .+..|+...+.+++.+.|...... .+...+.+.+||++....+.+.|+||+||||+|++    +|+
T Consensus       122 v~GwG~~~~~~~-~~~~L~~~~~~~~~~~~C~~~~~~-~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~  195 (234)
T 1orf_A          122 VAGWGRTHNSAS-WSDTLREVEITIIDRKVCNDRNHY-NFNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEG----VFR  195 (234)
T ss_dssp             EEESSCSSSSSC-CCSBCEEEEEEEECHHHHTSTTTT-TTTTCCCTTEEEEECSSCCCBCCTTCTTCEEEETT----EEE
T ss_pred             EEECCcCCCCCC-ccccceEeEEEeeCHHHcCCcccc-ccCCccCCCEEEecCCCCCCcCCCCCCCCeEEECC----EEE
Confidence            999998765543 367899999999999999842111 11123455999998755568899999999999953    599


Q ss_pred             EEEEecC--CCCCCCCCeEEEeCC-CCHHHHHHhhccc
Q psy12782        167 GIVSAGY--SCAQQGQPGIYHRVA-YTVDWISYIMNTA  201 (203)
Q Consensus       167 Gv~s~~~--~c~~~~~~~v~t~v~-~~~~WI~~~i~~~  201 (203)
                      ||+||+.  .|+..+.|.+||||+ .|++||+++|+.+
T Consensus       196 GI~S~g~~~~C~~~~~p~vyt~v~~~~~~WI~~~~~~~  233 (234)
T 1orf_A          196 GVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKGA  233 (234)
T ss_dssp             EEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHCC-
T ss_pred             EEEEEcCCCCCCCCCCCCEEEEchHHHHHHHHHHHHhc
Confidence            9999997  798778899999999 9999999999753

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=100.00  E-value=1.2e-38  Score=243.35  Aligned_cols=174  Identities=30%  Similarity=0.566  Sum_probs=148.3

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeE
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW   86 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~   86 (203)
                      +..+.|++|..+...     ..+.+.|+++++||+|+  .....||||||+|++|+.|+++++|||||.......+..|.
T Consensus        49 ~~~~~v~~G~~~~~~-----~~~~~~v~~~~~hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~~~~~~~~  121 (222)
T 1eq9_A           49 LNRLKVHVGTNYLSE-----SGDVYDVEDAVVNKNYD--DFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCT  121 (222)
T ss_dssp             GGGEEEEESCSBTTS-----CCEEEEEEEEEECTTCB--TTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTTCTTSEEE
T ss_pred             CceEEEEECceecCC-----CCeEEEEEEEEECCCCC--CCCCCCCEEEEEECCccccCCceEccCCCCCCcCCCCCEEE
Confidence            577999999987743     37889999999999997  46788999999999999999999999999877545688999


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ++|||....+.. .+..|+..++.+++.+.|.+...      .+.+.++|++. ..+.+.|.||+||||++++    +|+
T Consensus       122 v~GwG~~~~~~~-~~~~L~~~~~~~~~~~~C~~~~~------~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~----~l~  189 (222)
T 1eq9_A          122 LTGWGSTRLGGN-TPNALQEIELIVHPQKQCERDQW------RVIDSHICTLT-KRGEGACHGDSGGPLVANG----AQI  189 (222)
T ss_dssp             EEECCCSSTTCC-CCSBCEEEEEEEECHHHHHHHSS------SCCTTEEEECC-CTTCBCCTTCTTCEEEETT----EEE
T ss_pred             EEcccccCCCCc-ccchheEeEEEEeCHHHhCcccC------CCCccEEeecC-CCCCeeeeCCccceEEECC----EEE
Confidence            999998765443 26789999999999999984221      16789999986 3457899999999999953    599


Q ss_pred             EEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        167 GIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       167 Gv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      ||+||+..|.. +.|.+||||++|++||+++|++
T Consensus       190 GI~S~g~~C~~-~~p~vyt~V~~~~~WI~~~~~~  222 (222)
T 1eq9_A          190 GIVSFGSPCAL-GEPDVYTRVSSFVSWINANLKK  222 (222)
T ss_dssp             EEEEECSTTTS-SSCEEEEEGGGGHHHHHHTSCC
T ss_pred             EEEEECCCcCC-CCCCEEEEHHHHHHHHHHHhhC
Confidence            99999998986 7799999999999999999864

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.3e-39  Score=253.78  Aligned_cols=178  Identities=20%  Similarity=0.350  Sum_probs=146.3

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCC----Ccc
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE----DFL   81 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~----~~~   81 (203)
                      ++..+.|++|.++...     ..+.+.|.++++||+|+  ..++.||||||||++|+.|+++++|||||....    ...
T Consensus        98 ~~~~~~V~~G~~~~~~-----~~~~~~v~~i~~Hp~y~--~~~~~nDIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~  170 (283)
T 3f1s_B           98 LHRNITVKTYFNRTSQ-----DPLMIKITHVHVHMRYD--ADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIP  170 (283)
T ss_dssp             SCSSCEEEECTTC-CC-----CCEEEEEEEEEECTTCB--TTTTBTCCEEEEESSCCCTTTTCCCCBCCCHHHHHHTTTT
T ss_pred             ccCceEEEEeeeeCCC-----CcEEEEeEEEEECCCCC--CCCCCCCEEEEEeCCcccCCCCEEeEECCCCccccccccC
Confidence            3457899999876543     38899999999999997  467889999999999999999999999998652    235


Q ss_pred             CceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCC
Q psy12782         82 GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTG  161 (203)
Q Consensus        82 ~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~  161 (203)
                      +..++++|||. . .. ..+..|+.+.+.+++.+.|...++.     .++++|||++...   ..|.+|+||||++..++
T Consensus       171 ~~~~~v~GwG~-~-~~-~~~~~L~~~~v~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~---~~~~gDSGgPlv~~~~~  239 (283)
T 3f1s_B          171 RTRGLLSGWAR-N-GT-DLGNSLTTRPVTLVEGEECGQVLNV-----TVTTRTYCERSSV---AAMHWMDGSVVTREHRG  239 (283)
T ss_dssp             TSCEEEEECBC-C---------CEEEEEEEECHHHHHHHHTS-----CCCTTEEEEECSS---CGGGBCTTCEEEEECSS
T ss_pred             CCEEEEEECCC-C-CC-CCCceeeEEEEeEeCHHHHhhhhcC-----CCCCCeEcccCCC---CCCCCCCCCcEEEEECC
Confidence            88899999998 2 22 2367899999999999999998764     3889999997442   35677999999999899


Q ss_pred             cEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        162 RWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       162 ~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      +|+|+||+||+. |+..+.|++||||+.|++||+++|+..+
T Consensus       240 ~~~l~GIvS~g~-c~~~~~p~vyt~V~~y~~WI~~~~~~~~  279 (283)
T 3f1s_B          240 SWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQIMNAHH  279 (283)
T ss_dssp             CEEEEEEECCCS-GGGCSSEEEEEEGGGGHHHHHHHHTC--
T ss_pred             EEEEEEEEEeCC-CCCCCcceEEEEhHHhHHHHHHHhhcch
Confidence            999999999985 7777889999999999999999998753

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=100.00  E-value=2.1e-38  Score=243.51  Aligned_cols=181  Identities=31%  Similarity=0.555  Sum_probs=154.3

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEe
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAA   88 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~   88 (203)
                      .+.|++|.++.....+. ..+.+.|.++++||+|+  ...+.||||||||++|+.+++.++|+|||.... ..+..|+++
T Consensus        45 ~~~v~~G~~~~~~~~~~-~~~~~~v~~~~~hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~-~~~~~~~v~  120 (231)
T 2aiq_A           45 NMRIYLGMHNLKVLNKD-ALRRFPKEKYFCLNTRN--DTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPP-SVGSVCRIM  120 (231)
T ss_dssp             SCEEEESCSCTTSCCTT-CEEECEEEEECCSSCCS--SSTTTTCCEEEEESSCCCCBTTBCCCCCCSSCC-CTTCEEEEE
T ss_pred             CCEEEEecccccccCCC-ceEEEEEEEEEECCCCC--CCCCCCCEEEEEecCCCCCCCcEEeeECCCCCC-CCCCEEEEE
Confidence            57899999887653332 36788999999999997  467899999999999999999999999998765 468999999


Q ss_pred             ecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEE
Q psy12782         89 GWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGI  168 (203)
Q Consensus        89 Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv  168 (203)
                      |||.........+..|+...+.+++.+.|+..+..      +.+.+||++....+...|.||+||||++++    +|+||
T Consensus       121 GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~------~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi  190 (231)
T 2aiq_A          121 GWGTITSPNATLPDVPHCANINILDYAVCQAAYKG------LAATTLCAGILEGGKDTCKGDSGGPLICNG----QFQGI  190 (231)
T ss_dssp             ESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTT------CCSSEEEEECTTCSCBCCTTCTTCEEEETT----EEEEE
T ss_pred             eCCccCCCCCccCchhhhccceecchhhhhhhhcC------CCcCcEEeccCCCCCcccCCcCCCcEEECC----EEEEE
Confidence            99987654433467899999999999999987642      688999998655668899999999999963    59999


Q ss_pred             EEec-CCCCCCCCCeEEEeCCCCHHHHHHhhcccCC
Q psy12782        169 VSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNTATN  203 (203)
Q Consensus       169 ~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~~  203 (203)
                      +||+ ..|+..+.|.+||||+.|++||+++++.+++
T Consensus       191 ~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~~~  226 (231)
T 2aiq_A          191 LSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGNTD  226 (231)
T ss_dssp             EEEECSSTTCTTCCEEEEEGGGGHHHHHHHHHTCSS
T ss_pred             EEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcCCCC
Confidence            9999 6798878899999999999999999997754

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=100.00  E-value=4.5e-38  Score=242.90  Aligned_cols=182  Identities=26%  Similarity=0.471  Sum_probs=153.8

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCcee
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFG   85 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~   85 (203)
                      +..+.|++|.++.....+....+.+.|.+++.||.        .||||||+|++|+.|+++++|||||...... .+..|
T Consensus        47 ~~~~~v~~G~~~~~~~~~~~~~~~~~v~~~~~~p~--------~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~  118 (240)
T 1si5_H           47 LKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPE--------GSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSC  118 (240)
T ss_dssp             GGGEEEEESCSBSSCSTTTTTCEEEEEEEEEECSS--------TTCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTCEE
T ss_pred             CccEEEEEeeeecCCCCCCCcceEEEEEEEEcCCC--------CCcEEEEEECCccccCCceeccCcCCcCCCCCCCCEE
Confidence            57899999999887754444578999999999994        5799999999999999999999999865433 58899


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFL  165 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~l  165 (203)
                      .++|||......  .+..|+...+.+++.+.|...+...   ..+.+.+||++....+...|.||+||||++..+++|+|
T Consensus       119 ~v~GwG~~~~~~--~~~~L~~~~~~~~~~~~C~~~~~~~---~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l  193 (240)
T 1si5_H          119 SVYGWGYTGLIN--YDGLLRVAHLYIMGNEKCSQHHRGK---VTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMV  193 (240)
T ss_dssp             EEEESSCCCCSS--CCCBCEEEEEEEECGGGTCC----------CCTTEEEEECSSSCCBCCTTCTTCEEEEECSSSEEE
T ss_pred             EEEEeCCCCCCC--CCCeeEEEEEeecCHHHhhhhhcCC---ccCCCCEEeecCCCCCCEeccCCCCCcEEEEECCcEEE
Confidence            999999876544  2578999999999999998766421   12689999998765567899999999999999999999


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        166 IGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       166 vGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +||+||+..|+..+.|.+||||+.|++||+++|+..
T Consensus       194 ~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  229 (240)
T 1si5_H          194 LGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTY  229 (240)
T ss_dssp             EEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSSC
T ss_pred             EEEEEECCCCCCCCCCcEEEEHHHHHHHHHHHHhcc
Confidence            999999999988788999999999999999999865

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=100.00  E-value=4.2e-38  Score=240.69  Aligned_cols=177  Identities=32%  Similarity=0.539  Sum_probs=149.6

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCC-CccCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE-DFLGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~-~~~~~~   84 (203)
                      ++..+.|++|.++...     ..+.+.|.++++||+|+.  .  .||||||||++|+.++++++|+|||.... ...+..
T Consensus        47 ~~~~~~v~~G~~~~~~-----~~~~~~v~~i~~hp~y~~--~--~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~g~~  117 (224)
T 1pq7_A           47 AQSGFQIRAGSLSRTS-----GGITSSLSSVRVHPSYSG--N--NNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSS  117 (224)
T ss_dssp             CGGGEEEEESCSBSSS-----SSEEECEEEEEECTTCBT--T--BTCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCE
T ss_pred             CCCceEEEeCcceecC-----CCEEEEEEEEEECCCCCC--C--CCCEEEEEeCCCCcCCCcccceecCCcccCCCCCCE
Confidence            4567999999988743     378899999999999973  2  78999999999999999999999995332 246899


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |.++|||.........+..|+...+.+++.+.|+..+...    .+.+.+||++....+...|.||+||||++. ++  +
T Consensus       118 ~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~-~g--~  190 (224)
T 1pq7_A          118 ATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS----AITNQMFCAGVSSGGKDSCQGDSGGPIVDS-SN--T  190 (224)
T ss_dssp             EEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTT----TSCTTEEEECCTTCCCBCCTTCTTCEEECT-TC--C
T ss_pred             EEEEecCCcCCCCCcccceeeEeEEEEEcHHHhhHhhcCC----CCCCCeEEeecCCCCCCCCcCCCCcceECc-CC--e
Confidence            9999999887654333678999999999999999877521    378999999865566889999999999995 23  5


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhh
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM  198 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i  198 (203)
                      |+||+||+..|+.++.|.+||||+.|++||+++|
T Consensus       191 l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i  224 (224)
T 1pq7_A          191 LIGAVSWGNGCARPNYSGVYASVGALRSFIDTYA  224 (224)
T ss_dssp             EEEEEEECSSSSCTTCCEEEEETTTSHHHHHHHC
T ss_pred             EEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHhhC
Confidence            9999999999988888999999999999999875

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=100.00  E-value=2.7e-39  Score=249.22  Aligned_cols=181  Identities=25%  Similarity=0.449  Sum_probs=152.9

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCC-----------CCCeEEEEECCCcCCCCCccceecCCC
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQAD-----------RYDVAVLRLDRPVQYMPHIAPICLPEK   76 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~-----------~~DiALl~L~~~~~~~~~i~picl~~~   76 (203)
                      +.+.|++|.+++....+.  .+.+.|.++++||+|+.  ...           .||||||+|++|+.|++.++|+|||..
T Consensus        45 ~~~~v~~G~~~~~~~~~~--~~~~~v~~~~~hp~y~~--~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picLp~~  120 (237)
T 1gvz_A           45 DDYQIWLGRHNLSKDEDT--AQFHQVSDSFLDPQFDL--SLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQ  120 (237)
T ss_dssp             SSCEEEESCSBTTSCCTT--CEEECEEEEEECTTSCG--GGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSS
T ss_pred             CCCeEEEeecccccCCCC--ceEEEeeeEecCCccCc--ccccccccccccccCCceEEEEeCCCcccCCcEeeeECCCC
Confidence            468899999988765553  78999999999999973  333           799999999999999999999999987


Q ss_pred             CCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeE
Q psy12782         77 GEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM  156 (203)
Q Consensus        77 ~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~  156 (203)
                      .. ..+..|.++|||.........+..|+...+++++.+.|...++.     .+.+.+||++........|+||+||||+
T Consensus       121 ~~-~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~  194 (237)
T 1gvz_A          121 EP-KLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCARAYPE-----KMTEFVLCATHRDDSGSICLGDSGGALI  194 (237)
T ss_dssp             CC-CTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEECGGGGCSSCGG-----GCCTTEEEEECSSTTCEECGGGTTCEEE
T ss_pred             CC-CCCCEEEEECCCcccCCCCCCCCccEEEEEeEeChhHhhhhhhh-----cCCCceEEEeeCCCCCccCCCCccCcEe
Confidence            64 46889999999987433222367899999999999999987653     3789999998755567899999999999


Q ss_pred             EeeCCcEEEEEEEEecC-CCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        157 MERTGRWFLIGIVSAGY-SCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       157 ~~~~~~~~lvGv~s~~~-~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      |++    +|+||+||+. .|+..+.|.+||||+.|++||+++|+.++
T Consensus       195 ~~~----~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~~s  237 (237)
T 1gvz_A          195 CDG----VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIEKNS  237 (237)
T ss_dssp             ETT----EEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHHHHHC
T ss_pred             eCC----EEEEEEEeCCCCCCCCCCCcEEEEHHHHHHHHHHHHhccC
Confidence            953    5999999998 78877889999999999999999998753

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=100.00  E-value=4.3e-38  Score=241.16  Aligned_cols=180  Identities=31%  Similarity=0.588  Sum_probs=151.4

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC-ccCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED-FLGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~-~~~~~   84 (203)
                      .+..+.|++|.++....+..  .+.+.|.++++||+|+  .....||||||+|++|+.|++.++|+|||..... ..+..
T Consensus        47 ~~~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~hp~y~--~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~~~~g~~  122 (228)
T 2xw9_A           47 ADGKVQVLLGAHSLSQPEPS--KRLYDVLRAVPHPDSQ--PDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTL  122 (228)
T ss_dssp             TTCCEEEEESCSBSSSCCTT--CEEEEEEEEEECTTCC--TTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTC-
T ss_pred             CCCceEEEEcccccCCCCCc--ceEEEEEEEEeCCCCC--CCCCCCcEEEEEeCCCcccCCCeeecccCCcccCCCCCCE
Confidence            45689999999988765443  7889999999999997  4678899999999999999999999999986443 35889


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |.++|||........ +..|+...+++++.++|+..+...   ..+.+.+||++.  .....|.||+||||+|++    +
T Consensus       123 ~~v~GwG~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~~---~~~~~~~~Ca~~--~~~~~C~GDsGgPL~~~~----~  192 (228)
T 2xw9_A          123 CDVAGWGIVNHAGRR-PDSLQHVLLPVLDRATCNRRTHHD---GAITERLMCAES--NRRDSCKGDAGGPLVCGG----V  192 (228)
T ss_dssp             CEEEESSCCSTTCCC-CSBCEEEECCEECHHHHTSTTTTT---TCCCTTEEEECC--SSCBCCTTCTTCEEEETT----E
T ss_pred             EEEEEecccCCCCCC-CchheEEEEEEcChhHhcCccccC---CcccCCEEecCC--CCCccCCCCCcccEEECC----E
Confidence            999999987655433 678999999999999998766421   137899999984  457899999999999953    6


Q ss_pred             EEEEEEecC-CCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        165 LIGIVSAGY-SCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       165 lvGv~s~~~-~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      |+||+|++. .|...+.|.+||||++|++||+++|+
T Consensus       193 l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  228 (228)
T 2xw9_A          193 LEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             EEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             EEEEEeecCCcCCCCCCCcEEEEHHHHHHHHHHHhC
Confidence            999999998 78877889999999999999999874

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=100.00  E-value=8e-38  Score=258.27  Aligned_cols=188  Identities=32%  Similarity=0.602  Sum_probs=154.6

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC---ccC
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED---FLG   82 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~---~~~   82 (203)
                      ++..+.|++|.++..  ..  ..+.+.|.++++||+|+. ...+.||||||||++|+.|+++++|||||.....   ..+
T Consensus       208 ~~~~~~V~~G~~~~~--~~--~~~~~~v~~i~~Hp~y~~-~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~  282 (403)
T 1zjk_A          208 DASALDIRMGTLKRL--SP--HYTQAWSEAVFIHEGYTH-DAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTD  282 (403)
T ss_dssp             CSTTEEEEESCSBTT--CS--CCEEEEEEEEEECTTCCT-TSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTT
T ss_pred             CcceEEEEccccccC--CC--CceEEeEEEEEECCCCCC-CCCCcccEEEEEeCCcCcCCCceecccCCCcccccccCCC
Confidence            367799999998532  12  378899999999999973 1268899999999999999999999999987542   257


Q ss_pred             ceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCC-CcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee--
Q psy12782         83 QFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNG-INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER--  159 (203)
Q Consensus        83 ~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~-~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~--  159 (203)
                      ..++++|||....+.  .+..|+.+.+.+++.++|...+.... ....++++|||++....+.+.|+||+||||++.+  
T Consensus       283 ~~~~v~GWG~~~~~~--~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~  360 (403)
T 1zjk_A          283 DIGTASGWGLTQRGF--LARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSE  360 (403)
T ss_dssp             CEEEEEESCTTSSSC--CCSBCEEEEEEEECHHHHHHHTTSSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEETT
T ss_pred             CeEEEEcCCcCCCCc--cCcccEEEEEeEeCHHHHhhhhhccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEECC
Confidence            899999999876542  36789999999999999998765321 0113789999998766568999999999999974  


Q ss_pred             CCcEEEEEEEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        160 TGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       160 ~~~~~lvGv~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      +++|+|+||+||+ ..|+..+.|++||||+.|++||+++|+.
T Consensus       361 ~~~~~l~GIvS~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~  402 (403)
T 1zjk_A          361 TERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD  402 (403)
T ss_dssp             TTEEEEEEEEEEECSCC--CCCCEEEEEGGGGHHHHHHHHTT
T ss_pred             CCcEEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            5789999999999 7898778899999999999999999874

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=100.00  E-value=1.1e-37  Score=239.58  Aligned_cols=184  Identities=23%  Similarity=0.322  Sum_probs=158.6

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCC-CccceecCCCCCC-ccC
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP-HIAPICLPEKGED-FLG   82 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~-~i~picl~~~~~~-~~~   82 (203)
                      .++..+.|++|..+...     ..+.+.|.++++| +|+  .....||||||+|++|+.|++ .++|+|||..... ..+
T Consensus        46 ~~~~~~~v~~G~~~~~~-----~~~~~~v~~i~~h-~y~--~~~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~~~~~~  117 (235)
T 3h7t_A           46 TKPSDISIHYGSSYRTT-----KGTSVMAKKIYIV-RYH--PLTMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPD  117 (235)
T ss_dssp             CCGGGEEEEESCSBSSS-----SSEEEEEEEEEEC-SCB--TTTTBTCCEEEEESSCCCCCSSSCCCCBCCCTTCCCCTT
T ss_pred             CCCCeeEEEcCcccccc-----CCceeeeeeEEee-ecC--CCCCCCCeEEEEeccccccCCccccceecCccccCCCCC
Confidence            45778999999988774     2588999999999 997  577889999999999999998 9999999988642 368


Q ss_pred             ceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCc
Q psy12782         83 QFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGR  162 (203)
Q Consensus        83 ~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~  162 (203)
                      ..|+++|||.........+..|+...+.+++.+.|...+........+.+++||++........|.||+||||++++.  
T Consensus       118 ~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~--  195 (235)
T 3h7t_A          118 TSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQNGT--  195 (235)
T ss_dssp             CEEEEEECCCSSTTCCCCCSBCEEEEEEEECHHHHHHHHHTTTCGGGCSTTEEEECBTTTTBBCCTTCTTCEEEETTE--
T ss_pred             CeEEEEecCCCCCCCCchhHHHhhCCCceeCHHHHHHHhhhcccCccccCCeEecCCCCCCCccccCCCCCceeeCCe--
Confidence            999999999887665334778999999999999999988764344458899999987766789999999999999543  


Q ss_pred             EEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        163 WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       163 ~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                        |+||+||+..|.. +.|.+||||++|++||+++|+..
T Consensus       196 --l~Gi~S~g~~C~~-~~p~vyt~v~~~~~WI~~~i~~~  231 (235)
T 3h7t_A          196 --LVGVASYISSMPS-EFPSVFLRVGYYVLDIKDIISGK  231 (235)
T ss_dssp             --EEEEECCCTTCCT-TSCEEEEEGGGGHHHHHHHHTTC
T ss_pred             --EEEEEEecCCCCC-CCCceEEEHHHHHHHHHHHHhCC
Confidence              9999999999887 88999999999999999999865

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=100.00  E-value=6.3e-38  Score=239.76  Aligned_cols=174  Identities=30%  Similarity=0.509  Sum_probs=147.0

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeEE
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGWA   87 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~~   87 (203)
                      .+.|++|.++....+.  ..+.+.|.++++||+|+  ..+..||||||||++|+.|++.++|||||...... .+..|.+
T Consensus        49 ~~~v~~G~~~~~~~~~--~~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v  124 (224)
T 1cgh_A           49 NINVTLGAHNIQRREN--TQQHITARRAIRHPQYN--QRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTV  124 (224)
T ss_dssp             SEEEEESCSBTTSCCT--TCEEEEEEEEEECTTCB--TTTTBSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEE
T ss_pred             CCEEEEeecccCCCCC--ccEEEEEEEEEcCCCCC--CCCCcCCEEEEEECCCCcCCCceEeeECCCCCCCCCCCCEEEE
Confidence            5889999998876444  37899999999999997  46788999999999999999999999999876533 6889999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||....+.  .+..|+...+++++.++|...+..     ...+.+||++........|.||+||||+|++    +|+|
T Consensus       125 ~GwG~~~~~~--~~~~l~~~~~~i~~~~~C~~~~~~-----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~G  193 (224)
T 1cgh_A          125 AGWGRVSMRR--GTDTLREVQLRVQRDRQCLRIFGS-----YDPRRQICVGDRRERKAAFKGDSGGPLLCNN----VAHG  193 (224)
T ss_dssp             EESCCSSSSC--CCSBCEEEEEEBCCHHHHHHHCTT-----CCTTTEEEECCTTSCCBCCTTCTTCEEEETT----EEEE
T ss_pred             EECCcCCCCC--CCCcceEEEEEeeCHHHHHHHhCc-----CCCcceEeeccCCCCCeEeeCCCccceEEcc----EEEE
Confidence            9999876332  367899999999999999987642     2556799998665567899999999999954    6999


Q ss_pred             EEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        168 IVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       168 v~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      |+||+. |+ ...|.+||||+.|++||+++|+
T Consensus       194 i~S~g~-~~-~~~p~vyt~V~~~~~WI~~~~~  223 (224)
T 1cgh_A          194 IVSYGK-SS-GVPPEVFTRVSSFLPWIRTTMR  223 (224)
T ss_dssp             EEEECC-TT-CCSCEEEEEGGGGHHHHHHHHH
T ss_pred             EEEEEC-CC-CCCCeEEEEHHHhHHHHHHHhh
Confidence            999997 43 3569999999999999999986

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=100.00  E-value=4.4e-38  Score=240.74  Aligned_cols=177  Identities=27%  Similarity=0.441  Sum_probs=148.7

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGW   86 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~   86 (203)
                      +.+.|++|.++.....+.  .+.+.|.++++||+|+  .....||||||||++|+.++..++|+|||...... .+..|.
T Consensus        49 ~~~~v~~G~~~~~~~~~~--~~~~~v~~~~~hp~y~--~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~  124 (226)
T 4ag1_A           49 RSITVTLGAHNITEEEDT--WQKLEVIKQFRHPKYN--TSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCR  124 (226)
T ss_dssp             SEEEEEESCSBTTSCCTT--CEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCCSSSCCCCCC-----CCTTCEEE
T ss_pred             CCeEEEeCCcccCCCCCc--ceEEEEEEEEeCCCCC--CCCCcCcEEEEEECCCCccCCceeccccCCcccCCCCCCEEE
Confidence            468999999988775553  7899999999999997  56788999999999999999999999999876533 688999


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ++|||........ +..|+...+.+++.+.|.....      +..+.+||++........|.||+||||+|..    +|+
T Consensus       125 v~GwG~~~~~~~~-~~~L~~~~~~~~~~~~C~~~~~------~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~  193 (226)
T 4ag1_A          125 VAGWGRTGVLKPG-SDTLQEVKLRLMDPQACSHFRD------FDHNLQLCVGNPRKTKSAFKGDSGGPLLCAG----VAQ  193 (226)
T ss_dssp             EEESSBSSTTSCB-CSBCEEEEEEEECGGGGTTSTT------CCTTTEEEESCTTSCCBCCTTCTTCEEEETT----EEE
T ss_pred             EEECCCCCCCCCC-CCEeEEEEEEEcChHHcccccC------cCccceEeeccCCCCCcCccCCCCCceEEcC----EEE
Confidence            9999988765533 6789999999999999984322      3578999998766668999999999999954    599


Q ss_pred             EEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        167 GIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       167 Gv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      ||+||+..|+..  |.+||||+.|++||+++|+.+
T Consensus       194 Gi~S~g~~c~~~--p~vyt~v~~~~~WI~~~i~~n  226 (226)
T 4ag1_A          194 GIVSYGRSDAKP--PAVFTRISHYRPWINQILQAN  226 (226)
T ss_dssp             EEEEECBTTCCS--CEEEEEHHHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCC--CCEEEEhHHHHHHHHHHHhcC
Confidence            999999988765  999999999999999999863

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=100.00  E-value=6.6e-38  Score=239.97  Aligned_cols=178  Identities=32%  Similarity=0.535  Sum_probs=151.4

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeE
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW   86 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~   86 (203)
                      +..+.|++|.++....+.  ..+.+.|.++++||+|+  .....||||||||++|+.|++.++|+|||.... ..+..|.
T Consensus        46 ~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~hp~y~--~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~-~~~~~~~  120 (226)
T 1azz_A           46 AGFVDVVLGAHNIREDEA--TQVTIQSTDFTVHENYN--SFVISNDIAVIRLPVPVTLTAAIATVGLPSTDV-GVGTVVT  120 (226)
T ss_dssp             CSCEEEEESCSBSSSCCT--TCEEEEECCEEECTTCB--TTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCC-CTTCEEE
T ss_pred             CCceEEEEcceEcCCCCC--ccEEEEEEEEEECCCCC--CCCCCCceEEEEECCccccCCCcccccCCCCCC-CCCCEEE
Confidence            567899999988776543  37889999999999997  467889999999999999999999999998764 5689999


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ++|||.........+..|+...+++++.+.|+..+.      .+.+.+||++. ..+.+.|.||+||||++++    +|+
T Consensus       121 v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~------~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~----~l~  189 (226)
T 1azz_A          121 PTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYG------IVTDGNICIDS-TGGKGTCNGDSGGPLNYNG----LTY  189 (226)
T ss_dssp             EEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHS------CCCTTEEEECC-TTTCBCCTTCTTCEEEETT----EEE
T ss_pred             EEeCCccCCCCCCCCchhEEeeEEEEChhHhhhhhC------cCCCceEeecC-CCCCccCCCCCCcceEECC----EEE
Confidence            999998765443346789999999999999998764      27899999985 3457899999999999743    699


Q ss_pred             EEEEecC--CCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        167 GIVSAGY--SCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       167 Gv~s~~~--~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      ||+||+.  .|. .+.|.+||||+.|++||+++++.+
T Consensus       190 Gi~S~g~~~~C~-~~~p~vyt~V~~~~~WI~~~~~~~  225 (226)
T 1azz_A          190 GITSFGAAAGCE-AGYPDAFTRVTYFLDWIQTQTGIT  225 (226)
T ss_dssp             EEEEEEETTCTT-SCCCEEEEESGGGHHHHHHHHCCC
T ss_pred             EEEEEECCCCCC-CCCCCEEEEHHHHHHHHHHHhCCC
Confidence            9999997  564 478999999999999999999764

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=100.00  E-value=1.4e-38  Score=262.49  Aligned_cols=187  Identities=32%  Similarity=0.638  Sum_probs=144.3

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCC-CCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFT-PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~-~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      +..+.|++|.++......   .+.+.|.++++||+|+.. ..++.||||||||++|+.|+++++|||||...... .+..
T Consensus       208 ~~~~~v~~G~~~~~~~~~---~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~  284 (399)
T 1gpz_A          208 NASLDVFLGHTNVEELMK---LGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLM  284 (399)
T ss_dssp             -CCCEEEESCSBHHHHHH---TCCCCEEEEEECSSCCSSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCE
T ss_pred             cceEEEEecccccccccc---ccccceEEEEECCCCCcCCCCCCCCcEEEEEECCcCcCCCceeeeecCCCccccCCCCE
Confidence            456899999988764322   346789999999999742 23578999999999999999999999999876432 5788


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee--CCc
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER--TGR  162 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~--~~~  162 (203)
                      ++++|||.....   .+..|+.+.+.+++.+.|...+........++++|||++....+.+.|+||+||||++.+  +++
T Consensus       285 ~~v~GwG~~~~~---~~~~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~~~~~  361 (399)
T 1gpz_A          285 GYVSGFGVMEEK---IAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDR  361 (399)
T ss_dssp             EEEEECC--------CCSBCEEEEEEEECHHHHHC-----------CCSEEEEECGGGGGGGGCSCSSCEEEEEETTTTE
T ss_pred             EEEEccCCCCCc---cCccceEEEEEEcCHHHhhhhhhcccccCcCCCCeEecccCCCCCccCCCCCchHeEEEECCCCe
Confidence            999999987643   257899999999999999886643211123688999998665557899999999999975  578


Q ss_pred             EEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        163 WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       163 ~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |+|+||+||+..|+.  .|++||||+.|++||+++|+.+
T Consensus       362 ~~l~GivS~g~~C~~--~~~vyt~V~~y~~WI~~~~~~~  398 (399)
T 1gpz_A          362 WVATGIVSWGIGCSR--GYGFYTKVLNYVDWIKKEMEEE  398 (399)
T ss_dssp             EEEEEEECCCTTTTT--TEEEEEEGGGGHHHHHHHTC--
T ss_pred             EEEEEEEEeCCCcCC--CCeEEEEhHHhHHHHHHHhccC
Confidence            999999999999975  3899999999999999999875

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=100.00  E-value=1.7e-37  Score=239.07  Aligned_cols=185  Identities=28%  Similarity=0.477  Sum_probs=154.2

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWA   87 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~   87 (203)
                      +.+.|++|..+....... ....+.+..++.||.|+  ...+.||||||+|++|+.++++++|+|||.... ..+..|++
T Consensus        47 ~~~~v~~g~~~~~~~~~~-~~~~~~~~~~~~h~~~~--~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~-~~~~~~~v  122 (238)
T 4e7n_A           47 KNFRIKLGMHSKKVPNED-EQTRVPKEKFFCLSSKN--YTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPP-SVGSVCRI  122 (238)
T ss_dssp             SSCEEEESCSCSSSCCTT-CEEECEEEEECSSTTCC--CCSSSCCCEEEEESSCCCCBTTBCCCCCCSSCC-CTTCEEEE
T ss_pred             CCCeEEeceeeccccCCC-ceeEeeeeeEEcCCCCC--CCCCCCcEEEEEeCCCccCCCceeeeeCCCCCC-CCCCEEEE
Confidence            457899999887754442 23445567777899997  467889999999999999999999999998865 35899999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||.........+..|+...+.+++.+.|...+....  ..+.+.+||++....+.+.|+||+||||+|++.    |+|
T Consensus       123 ~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~--~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~----l~G  196 (238)
T 4e7n_A          123 MGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFE--LPATSRTLCAGILEGGKDTCKGDSGGPLICNGQ----FQG  196 (238)
T ss_dssp             EESSCSSSSSCCCCSSCEEEEEEEECGGGGTTTCGGGC--CCSCCSEEEEECTTCSCBCCTTCTTCEEEETTE----EEE
T ss_pred             EECCCCCCCCCCCCccceEeeccccCHHHHhhhccccc--CCCCCCeEEeCCCCCCCccCCCCCCcceEECCE----EEE
Confidence            99998775543347889999999999999998766421  247899999987666789999999999999654    999


Q ss_pred             EEEecCC-CCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        168 IVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       168 v~s~~~~-c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      |+||+.. |+..+.|.+||||+.|++||+++|+.++
T Consensus       197 i~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~~  232 (238)
T 4e7n_A          197 IASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAGNT  232 (238)
T ss_dssp             EEEECCSSTTCTTCCEEEEESGGGHHHHHHHHTTCT
T ss_pred             EEEEeCCCCCCCCCCeEEEEhHHHHHHHHHHHhcCC
Confidence            9999986 8887899999999999999999999764

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=100.00  E-value=3.6e-37  Score=236.67  Aligned_cols=182  Identities=28%  Similarity=0.450  Sum_probs=152.6

Q ss_pred             ceeEEEeeeeeecccCCCCCceEE-eeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTF-GVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW   86 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~-~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~   86 (203)
                      ..+.|++|..........  .+.+ .+..++.||.|+  ...+.||||||+|++|+.+++.++|+|||..... .+..|+
T Consensus        45 ~~~~v~~g~~~~~~~~~~--~~~~~~~~~~~~h~~~~--~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~-~~~~~~  119 (234)
T 3s69_A           45 TNFQMKLGVHSKKVLNED--EQTRNPKEKFICPNKKN--DEVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPS-VGSVCH  119 (234)
T ss_dssp             SSCEEEESCCCSSSCCTT--CEEECEEEEEECTTCCT--TCTTSSCCEEEEESSCCCCBTTBCCCCCCSSCCC-TTCEEE
T ss_pred             CCceEEecccccccccCC--cceeeceEEEECCCccC--CCCCcccEEEEeeCCcCCCCCcceeeecCCCCCC-CCCEEE
Confidence            457899999887654443  4444 456666799997  5678899999999999999999999999988753 589999


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ++|||.........+..|+...+.+++.+.|...+...    ...+.+||++....+...|.||+||||+|++.    |+
T Consensus       120 v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~----l~  191 (234)
T 3s69_A          120 IMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPEL----LTEYRTLCAGILEGGKDTCGGDSGGPLICNGQ----FQ  191 (234)
T ss_dssp             EEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTC----CTTSCEEEEECTTCSCBCCTTCTTCEEEETTE----EE
T ss_pred             EEECCCCCCCCcCcccccceeEEeecCHHHHhhhcccc----cCCcceEeccCCCCCCccCCCCCccceEEcCE----EE
Confidence            99999877654334678999999999999999877642    47889999987666789999999999999654    99


Q ss_pred             EEEEecCC-CCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        167 GIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       167 Gv~s~~~~-c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      ||+||+.. |+..+.|.+||||+.|++||+++|+.++
T Consensus       192 Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~~~  228 (234)
T 3s69_A          192 GIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAGNT  228 (234)
T ss_dssp             EEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTCT
T ss_pred             EEEEEcccccCCCCCCcEEeeHHHHHHHHHHHhcCCc
Confidence            99999976 8887889999999999999999998753

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=100.00  E-value=2.7e-38  Score=273.31  Aligned_cols=186  Identities=37%  Similarity=0.731  Sum_probs=143.1

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      .+..+.|++|.++.....+.  .+.+.|.++++||+|+  .....||||||+|++|+.|+++++|||||...... .+..
T Consensus       438 ~~~~~~V~~G~~~~~~~~~~--~~~~~V~~ii~Hp~y~--~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~~~~  513 (625)
T 2f83_A          438 SPKILRVYSGILNQSEIKED--TSFFGVQEIIIHDQYK--MAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTD  513 (625)
T ss_dssp             CGGGEEEEESCSBGGGCCSS--CCCEEEEEEEECTTCC--BTTTBCCCEEEEESSCCCCBTTBCCCBCCCGGGTTCCCCC
T ss_pred             CCceEEEEEEeccCCCCCCC--ceEEeEEEEEECCccC--cCCccccEEEEEECCcccCCCceeeeEcCCccCCccCCCE
Confidence            45678999999887654432  5678999999999997  45678999999999999999999999999865432 5788


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      ++++|||........ +..|+.+.+++++.++|...+...    .+++.|||++....+.+.|+||+||||++..+++|+
T Consensus       514 ~~v~GWG~~~~~~~~-s~~L~~~~v~i~~~~~C~~~~~~~----~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~  588 (625)
T 2f83_A          514 CWVTGWGYRKLRDKI-QNTLQKAKIPLVTNEECQKRYRGH----KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWH  588 (625)
T ss_dssp             EEECBCC------CC-CSBCBCCEECCCCHHHHHTTCTTS----CCCTTBCCC----------CCCTTCEEEEEETTEEE
T ss_pred             EEEEEecCCCCCCcC-CcccEEEEEEEcCHHHHHHHhccC----CCCCCeEEeecCCCCCcCCCCCcccceEEEECCeEE
Confidence            999999987654432 678999999999999999876532    478999999866566789999999999999889999


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      |+||+||+..|+..+.|++||||+.|++||+++|+.
T Consensus       589 lvGIvS~G~~C~~~~~P~vyT~V~~y~~WI~~~~~~  624 (625)
T 2f83_A          589 LVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQA  624 (625)
T ss_dssp             EEEEEEECCC----CCCCEEEEGGGGHHHHHHTC--
T ss_pred             EEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            999999999998888899999999999999998863

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=1.3e-37  Score=237.68  Aligned_cols=176  Identities=29%  Similarity=0.536  Sum_probs=150.6

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCcee
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFG   85 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~   85 (203)
                      .+.+.|++|..+.......  .+.+.|.++++||+|+  ..+..||||||||++|+.|++.++|+|||...... .+..|
T Consensus        48 ~~~~~v~~g~~~~~~~~~~--~~~~~v~~~~~hp~y~--~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~  123 (224)
T 3rp2_A           48 GREITVILGAHDVRKREST--QQKIKVEKQIIHESYN--SVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMC  123 (224)
T ss_dssp             CSEEEEEESCSBTTSCCTT--CEEEEEEEEEECTTCC--SSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEE
T ss_pred             CCCcEEEEeccccCcCCCC--cEEEEEEEEEECCCcc--CCCCCccEEEEEcCCCcccCCcccceecCCcccCCCCCCEE
Confidence            3568999999887765553  7899999999999997  46788999999999999999999999999876533 68999


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFL  165 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~l  165 (203)
                      +++|||........ +..|+...+.+++.+.|.....      ...+.++|++........|.||+||||+|..    +|
T Consensus       124 ~v~GwG~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~------~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l  192 (224)
T 3rp2_A          124 WAAGWGKTGVRDPT-SYTLREVELRIMDEKACVDYRY------YEYKFQVCVGSPTTLRAAFMGDSGGPLLCAG----VA  192 (224)
T ss_dssp             EEEESSEEETTEEE-CSBCEEEEEEEECGGGTTTTTC------CCTTTEEEECCTTSCCBCCTTTTTCEEEETT----EE
T ss_pred             EEEeCCCCCCCCCC-CceeeEeeeeecChHHhccccc------cCcCCEEEecCCCCCCeeccCCCCCeEEEcc----ee
Confidence            99999988765433 6679999999999999987321      3678999998766668999999999999954    59


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        166 IGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       166 vGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      +||+||+..|+..  |.+||||+.|++||+++|+
T Consensus       193 ~Gi~S~g~~c~~~--p~vyt~v~~y~~WI~~~i~  224 (224)
T 3rp2_A          193 HGIVSYGHPDAKP--PAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             EEEEEECCTTCCS--CEEEEEHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCC--CcEEEEHHHhHHHHHHHhC
Confidence            9999999988765  9999999999999999985

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=100.00  E-value=3.8e-37  Score=235.22  Aligned_cols=178  Identities=28%  Similarity=0.505  Sum_probs=149.6

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeE
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW   86 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~   86 (203)
                      +..+.|++|..+....    ..+.+.|.++++||+|+  ...+.||||||||++|+.+    .|+||+.... ..+..|.
T Consensus        45 ~~~~~v~~G~~~~~~~----~~~~~~v~~i~~hp~y~--~~~~~~DIALl~L~~~v~~----~~i~l~~~~~-~~~~~~~  113 (224)
T 3beu_A           45 NTSITATGGVVDLQSS----SAVKVRSTKVLQAPGFT--KETYGKDWALIKLAQPINQ----PTLKIATTTA-YNQGTFT  113 (224)
T ss_dssp             BCCCEEEESCSBTTCT----TCEEEEEEEEEECTTCC--CGGGSCCCEEEEESSCCCS----CCCEECCSST-TSSSEEE
T ss_pred             cceEEEEeeEeecCCC----CceEEEEEEEEeCCCcC--CCcCCCCEEEEEeCCCCCC----Cccccccccc-cCCCEEE
Confidence            4678999999877542    25788999999999997  4677899999999999964    5889887643 3466899


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee-CCcEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-TGRWFL  165 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-~~~~~l  165 (203)
                      ++|||....+... +..|+...+++++.+.|+..+...    .+.+.+||++........|.||+||||++.. +++|+|
T Consensus       114 v~GwG~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~l  188 (224)
T 3beu_A          114 VAGWGANREGGSQ-QRYLLKANVPFVSDAACRSSSSFI----LVANEMICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQ  188 (224)
T ss_dssp             EEESSCSSTTCCC-CSBCEEEEEEEECHHHHHHHCSSC----CCGGGEEEECCSSSSCBCCTTCTTCEEEEECTTSCEEE
T ss_pred             EEecCccCCCCcc-cceeeEeeCcccCHHHhhhhcCCc----cCCCCeEEeccCCCCCcCCCCcCCCeeEEecCCCCEEE
Confidence            9999987765432 678999999999999999876422    4678999998655567899999999999986 689999


Q ss_pred             EEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        166 IGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       166 vGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      +||+||+..|+..+.|.+||||+.|++||++++++
T Consensus       189 ~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  223 (224)
T 3beu_A          189 VGIVSWGEGCARKGKYGVYTEVSTFASAIASAART  223 (224)
T ss_dssp             EEEEEEESSSSCTTCCEEEEEHHHHHHHHHHHHTT
T ss_pred             EEEeccCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            99999999998878899999999999999999874

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=100.00  E-value=3.9e-37  Score=236.56  Aligned_cols=180  Identities=29%  Similarity=0.540  Sum_probs=151.7

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWA   87 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~   87 (203)
                      +.+.|++|..+.....+. ......+..+++||.|+  ...+.||||||+|++|+.|++.++|+|||..... .+..|++
T Consensus        47 ~~~~v~~g~~~~~~~~~~-~~~~~~~~~~~~h~~~~--~~~~~~DIALl~L~~~v~~~~~v~pi~L~~~~~~-~~~~~~v  122 (234)
T 3s9c_A           47 RNIRIKLGMHSKNIRNED-EQIRVPRGKYFCLNTKF--PNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRG-VGSRCRI  122 (234)
T ss_dssp             TTEEEEESCSSSSSCCTT-CEEECEEEEECCSSCSS--TTCGGGCCEEEEESSCCCCBTTBCCCBCCSSCCC-TTCEEEE
T ss_pred             CCceEEEeecccccccCC-cceEEeeeEEEeCCCCC--CCCCcCceEEEEECCccccCCcccccccCCCCCC-CCCeEEE
Confidence            458899999887764442 23344566777799997  4678899999999999999999999999988754 5899999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||......  .+..|+...+.+++.+.|...+...    .+.+.+||++....+.+.|+||+||||+|++.    |+|
T Consensus       123 ~GwG~~~~~~--~~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~----l~G  192 (234)
T 3s9c_A          123 MGWGKISTTT--YPDVPHCTNIFIVKHKWCEPLYPWV----PADSRTLCAGILKGGRDTCHGDSGGPLICNGE----MHG  192 (234)
T ss_dssp             EESSCSBTTB--CCSSCEEEEEEEECGGGTTTTCTTS----CTTSSEEEEECTTSSCBCCTTCTTCEEEETTE----EEE
T ss_pred             EeeCCCCCCC--CCccccccceEecCHHHhhhcccCC----CCCcceEEeecCCCCCccCCCCCCCeEEEeCC----cEE
Confidence            9999877652  3678999999999999999876532    47899999987666789999999999999764    999


Q ss_pred             EEEecCC-CCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        168 IVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       168 v~s~~~~-c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |+||+.. |+..+.|.+||||+.|++||+++|+.+
T Consensus       193 i~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~~  227 (234)
T 3s9c_A          193 IVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIAGN  227 (234)
T ss_dssp             EEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHTC
T ss_pred             EEEEeCCCCCCCCCCcEEEEhHHhHHHHHHHHcCC
Confidence            9999976 888788999999999999999999875

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=100.00  E-value=3.9e-37  Score=246.73  Aligned_cols=174  Identities=21%  Similarity=0.359  Sum_probs=148.8

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCC----CccC
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE----DFLG   82 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~----~~~~   82 (203)
                      ++.+.|++|..+...     ..+.+.|.++++||+|+  ..++.||||||||++|+.|+++++|||||....    ...+
T Consensus       140 ~~~~~V~~G~~~~~~-----~~~~~~v~~i~~Hp~y~--~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~  212 (317)
T 3h5c_B          140 HRNITVKTYFNRTSQ-----DPLMIKITHVHVHMRYD--ADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPR  212 (317)
T ss_dssp             CSSCEEEECTTSCTT-----SCEEEEEEEEEECTTCB--TTTTBSCCEEEEESSCCCTTTSCCCCBCCCHHHHHHTTTTT
T ss_pred             CCceEEEEeeecCCC-----CcEEEEeeEEEECCCCC--CCCCCCCeEEEEeCCcccCCCCccceeCCCcccccccccCC
Confidence            557899999876543     37899999999999997  467889999999999999999999999998752    2358


Q ss_pred             ceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCc
Q psy12782         83 QFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGR  162 (203)
Q Consensus        83 ~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~  162 (203)
                      ..++++|||..  .. ..+..|+.+.+.+++.++|...+..     .+++.|||++..   ...|.+|+||||++..+++
T Consensus       213 ~~~~v~GwG~~--~~-~~~~~L~~~~v~~~~~~~C~~~~~~-----~~~~~~~Ca~~~---~~~~~gDsGgPl~~~~~~~  281 (317)
T 3h5c_B          213 TRGLLSGWARN--GT-DLGNSLTTRPVTLVEGEECGQVLNV-----TVTTRTYCERSS---VAAMHWMDGSVVTREHRGS  281 (317)
T ss_dssp             SCEEEEBCCTT--CC-SSSCCCBCCEEEEECHHHHHHHHTC-----CCCTTEEEEECS---CCCCCCCTTCEEEEEETTE
T ss_pred             CeEEEEecCCC--CC-CCCccceEEEEEEECHHHHhhhhcC-----cCCCceeECCCC---CCCcCCCCCCCEEEecCCE
Confidence            89999999982  22 2367899999999999999998764     388999999743   3467899999999999999


Q ss_pred             EEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        163 WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       163 ~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      |+|+||+||+. |+..+.|++||||+.|++||+++|+
T Consensus       282 ~~l~Gi~S~g~-~~~~~~p~vyt~V~~y~~WI~~~i~  317 (317)
T 3h5c_B          282 WFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQIMN  317 (317)
T ss_dssp             EEEEEEECCCC-SSCCTTEEEEEEGGGCHHHHHHHHC
T ss_pred             EEEEEEEEECC-CCCCCcceEEEEhHHhHHHHHHHhC
Confidence            99999999984 7777889999999999999999884

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=100.00  E-value=3.8e-37  Score=222.04  Aligned_cols=146  Identities=32%  Similarity=0.663  Sum_probs=126.7

Q ss_pred             CCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCC--CCccCceEEEEeeeChhhHhhHhhh
Q psy12782         46 PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSR--LRPKTLQAVDVPIIDNRQCERWHKS  123 (203)
Q Consensus        46 ~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~--~~~~~l~~~~~~~~~~~~C~~~~~~  123 (203)
                      ..++.||||||||++|+.|+++++|||||.... ..+..|+++|||.......  ..+..|+.+.+.+++.+.|+..+..
T Consensus         3 ~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~-~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~   81 (152)
T 2pka_B            3 GKDYSHDLMLLRLQSPAKITDAVKVLELPTQEP-ELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADAHPD   81 (152)
T ss_dssp             CSBCTTCCEEEEESSCCCCCSSCCCCCCCSSCC-CTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHHHHCSS
T ss_pred             CCCCCCCEEEEEECCCCcCCCCEEeEECCCCCC-CCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhhhhhcC
Confidence            457889999999999999999999999998764 3588999999998876542  2367899999999999999987653


Q ss_pred             CCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       124 ~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                           .+.+.+||++....+...|+||+||||+|.+    +|+||+||+ ..|+..+.|.+||||+.|++||+++|+.+
T Consensus        82 -----~~~~~~iCa~~~~~~~~~C~GDsGgPL~~~g----~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~~  151 (152)
T 2pka_B           82 -----KVTESMLCAGYLPGGKDTCMGDSGGPLICNG----MWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTITEN  151 (152)
T ss_dssp             -----BCCTTEEEEECTTSSCBCCTTCTTCEEEETT----EEEEEECCCCSSTTCTTCCEEEEEGGGGHHHHHHHHHHC
T ss_pred             -----CCCCCEEeeccCCCCCcccCCccccceEECC----EEEEEEecCCCCCCCCCCCeEEEEHHHHHHHHHHHhccC
Confidence                 3789999998655567899999999999973    499999999 78988788999999999999999999865

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=100.00  E-value=9.5e-37  Score=233.48  Aligned_cols=178  Identities=19%  Similarity=0.326  Sum_probs=152.8

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCC-CccceecCCCCCC-ccC
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP-HIAPICLPEKGED-FLG   82 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~-~i~picl~~~~~~-~~~   82 (203)
                      .++..+.|++|..+......   .+.+.|.++++| +|+  ..+..||||||+|++|+.+++ .++|+|||..... ..+
T Consensus        48 ~~~~~~~v~~g~~~~~~~~~---~~~~~v~~i~~h-~y~--~~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~~~~~~  121 (228)
T 3h7o_A           48 QKPETIVIQYESTNLWEDPG---KSDPYVSHVYLS-FYR--QETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTG  121 (228)
T ss_dssp             SCGGGCEEEESCSBTTTBCC---EEECCEEEEEES-SCB--TTTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTCCCCTT
T ss_pred             CCCCcEEEEecccccccCCC---ceeeeEEEEEcc-ccC--CCCccCCEEEEEECCcccccccccccccCCccccCCCCC
Confidence            35678999999988775433   688899999999 887  567889999999999999998 9999999987642 368


Q ss_pred             ceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCc
Q psy12782         83 QFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGR  162 (203)
Q Consensus        83 ~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~  162 (203)
                      ..|.++|||........ +..|+...+.+++.++|...+...    .+.+.+||++...  ...|.||+||||++++.  
T Consensus       122 ~~~~v~GwG~~~~~~~~-~~~L~~~~~~~~~~~~C~~~~~~~----~~~~~~~Ca~~~~--~~~C~GDsGgPl~~~~~--  192 (228)
T 3h7o_A          122 SDVLVSGYGDGQTMDPK-DHDLKSAQLTVVDLDECRTKYGPI----FLSLQVFCAQKVG--VSLESGDAGDPTVQQDT--  192 (228)
T ss_dssp             CEEEEEECCCSSCSCGG-GGBCEEEEEEEECHHHHHHHHTTS----CCCSSEEEEECTT--CCCCGGGTTCEEEETTE--
T ss_pred             CeeEEEEEecCCCCCCc-ccccccceeEEEcHHHHHHHhcCc----cCCceEEecCCCC--CcCCCCCCCCcceecCe--
Confidence            99999999987765433 678999999999999999987642    4789999998543  78999999999999654  


Q ss_pred             EEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        163 WFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       163 ~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                        |+||+||+..|.. +.|.+||||+.|++||+++|++
T Consensus       193 --l~Gi~S~g~~c~~-~~p~vyt~v~~~~~WI~~~i~~  227 (228)
T 3h7o_A          193 --LVGVAAYFPKRPE-GAPEVFTKVGSYVSWIQDIIKK  227 (228)
T ss_dssp             --EEEEECCCTTCCT-TCCEEEEEGGGTHHHHHHHHTT
T ss_pred             --EEEEEeecCcCCC-CCCcEEEEHHHHHHHHHHHhhc
Confidence              9999999988876 8899999999999999999986

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=100.00  E-value=8.2e-37  Score=246.38  Aligned_cols=184  Identities=30%  Similarity=0.596  Sum_probs=143.8

Q ss_pred             eeEEEeeeeeecccCCCCCceEEee---EEEEeCCCCCC-----CCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC-
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGV---RKINVHPYFKF-----TPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED-   79 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v---~~i~~hp~y~~-----~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~-   79 (203)
                      ...|++|.++....    ..+.+.|   .++++||+|+.     ...++.||||||||++|+.|+++++|||||..... 
T Consensus       127 ~~~v~~G~~~~~~~----~~~~~~v~~v~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~  202 (333)
T 1elv_A          127 EPTMYVGSTSVQTS----RLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDY  202 (333)
T ss_dssp             SCCEECSCSBCC-----------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGG
T ss_pred             CCeEEEeeeecccC----ccceeeeeccceEEECCCCcccccccccCCCcceEEEEEeCCCCcCCCcccceecCCCcccc
Confidence            34789999877321    1445556   99999999972     12467899999999999999999999999977643 


Q ss_pred             --ccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCC----CcccccCCeEEeeeeCCCCCCCcCCCCC
Q psy12782         80 --FLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNG----INVVIYDEMMCAGYRGGAKDSCQGDSGG  153 (203)
Q Consensus        80 --~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~----~~~~~~~~~~C~~~~~~~~~~c~~d~G~  153 (203)
                        ..+..|+++|||......  .+..|+.+.+.+++.+.|...+....    ....++++|||++... +.+.|+||+||
T Consensus       203 ~~~~g~~~~v~GWG~t~~~~--~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~~-~~~~C~GDSGG  279 (333)
T 1elv_A          203 NLMDGDLGLISGWGRTEKRD--RAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKGDSGG  279 (333)
T ss_dssp             CCCTTCEEEEEESCCCSSCS--SCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTTCTTC
T ss_pred             cccCCcEEEEEECcCcCCCC--cCceeEEEEEEEEcHHHhhhhhhcccccccccccCCCCeECccCCC-CCCcCcCcCCC
Confidence              247899999999876642  26789999999999999987654210    0124789999998654 67899999999


Q ss_pred             eeEEee--CC-cEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        154 PLMMER--TG-RWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       154 pl~~~~--~~-~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      ||++.+  ++ +|+|+||+||+..|+.   |++||||+.|++||+++|+.++
T Consensus       280 PL~~~~~~~~~~~~l~GIvS~g~~C~~---~~vyt~V~~y~~WI~~~~~~~~  328 (333)
T 1elv_A          280 AFAVQDPNDKTKFYAAGLVSWGPQCGT---YGLYTRVKNYVDWIMKTMQENS  328 (333)
T ss_dssp             EEEEECSSCTTCEEEEEEEEECSSTTS---EEEEEEGGGGHHHHHHHHHHTC
T ss_pred             ceEEEECCCCcEEEEEEEEeeCCCCCC---CcEEeEHHHHHHHHHHHHhccC
Confidence            999974  34 8999999999998974   7999999999999999998754

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=100.00  E-value=4.3e-36  Score=228.66  Aligned_cols=169  Identities=29%  Similarity=0.507  Sum_probs=144.3

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      +++.+.|++|.++......  ..+.+.|.+++.| +|+  .....||||||||++|+.|++.++|+|||...... .+..
T Consensus        47 ~~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~h-~y~--~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~  121 (218)
T 2z7f_E           47 NVRAVRVVLGAHNLSRREP--TRQVFAVQRIFEN-GYD--PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQ  121 (218)
T ss_dssp             CGGGCEEEESCSBTTSCCT--TCEEEEEEEEEES-CCB--TTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCE
T ss_pred             CcCcEEEEEeceecCCCCC--ceEEEEEEEEEcc-CCC--CCCCCCCEEEEEECCcCcCCCceeccCcCCCCCCCCCCCE
Confidence            4567999999998876544  3789999999999 997  46788999999999999999999999999876543 5889


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |.++|||........ +..|+...+.++ .+.|...             ++|++........|.||+||||++++    +
T Consensus       122 ~~v~GwG~~~~~~~~-~~~l~~~~~~~~-~~~C~~~-------------~~Ca~~~~~~~~~C~GDSGgPl~~~~----~  182 (218)
T 2z7f_E          122 CLAMGWGLLGRNRGI-ASVLQELNVTVV-TSLCRRS-------------NVCTLVRGRQAGVCFGDSGSPLVCNG----L  182 (218)
T ss_dssp             EEEEESSBCSSSCCB-CSBCEEEEEEEE-CTTCCTT-------------SEEEECTTSCCBCCTTCTTCEEEETT----E
T ss_pred             EEEEEeCCCCCCCCc-cchheEeeeEEe-hhHcCcc-------------eeeeccCCCCCeeCCCcCCCceEEcc----E
Confidence            999999988765433 678999999999 8889752             89998765567899999999999964    5


Q ss_pred             EEEEEEe--cCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        165 LIGIVSA--GYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       165 lvGv~s~--~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      |+||+||  +. |...+.|.+||||+.|++||+++|+
T Consensus       183 l~Gi~S~~~g~-C~~~~~p~vyt~V~~~~~WI~~~~~  218 (218)
T 2z7f_E          183 IHGIASFVRGG-CASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             EEEEEEEESSS-TTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             EEEEEEeCCcc-CCCCCCCeEEEEHHHhHHHHHHHhC
Confidence            9999999  65 8877789999999999999999874

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=100.00  E-value=9.1e-36  Score=228.53  Aligned_cols=174  Identities=31%  Similarity=0.535  Sum_probs=145.9

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCC---CccCc
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE---DFLGQ   83 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~---~~~~~   83 (203)
                      +..+.|++|..+...     ..+.+.|.++++||+|+  ...+.||||||+|+ |+.|++.++|||||....   ...+.
T Consensus        50 ~~~~~v~~G~~~~~~-----~~~~~~v~~i~~hp~y~--~~~~~~DiALl~L~-~~~~~~~v~picLp~~~~~~~~~~~~  121 (230)
T 2hlc_A           50 AVSVVVYLGSAVQYE-----GEAVVNSERIISHSMFN--PDTYLNDVALIKIP-HVEYTDNIQPIRLPSGEELNNKFENI  121 (230)
T ss_dssp             EEEEEEEESCSBTTC-----CSEEEECSEEEECTTCB--TTTTBTCCEEEECS-CCCCCSSCCCCBCCCGGGGGCCCTTC
T ss_pred             CcceEEEEeeeecCC-----CCeEEEEEEEEECCCCC--CCCccccEEEEEec-CCCcCCcEeeeEcCCccccccccCCc
Confidence            457899999987654     15789999999999997  46788999999999 999999999999998753   23578


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcE
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW  163 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~  163 (203)
                      .|+++|||......    ..|+...+.+++.+.|...+...    .+.+.+||++.. .+...|.||+||||++.++  +
T Consensus       122 ~~~v~GwG~~~~~~----~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~Ca~~~-~~~~~C~GDSGgPl~~~~~--~  190 (230)
T 2hlc_A          122 WATVSGWGQSNTDT----VILQYTYNLVIDNDRCAQEYPPG----IIVESTICGDTS-DGKSPCFGDSGGPFVLSDK--N  190 (230)
T ss_dssp             EEEEEESSCCSSCC----CBCEEEEEEEECHHHHHTTSCTT----SSCTTEEEECCT-TSCBCCTTCTTCEEEEGGG--T
T ss_pred             EEEEEeeeecCCCC----ceeEEEEEEEeCHHHhhhhhCCC----cccCCeEEecCC-CCCCcCCCCCCCeeEECcC--C
Confidence            89999999765442    57999999999999999876532    378899999853 4578999999999999753  3


Q ss_pred             EEEEEEEecC--CCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        164 FLIGIVSAGY--SCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       164 ~lvGv~s~~~--~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      +|+||+||+.  .| ..+.|.+||||+.|++||+++++.
T Consensus       191 ~l~Gi~S~g~~~~C-~~~~p~vyt~V~~~~~WI~~~~~~  228 (230)
T 2hlc_A          191 LLIGVVSFVSGAGC-ESGKPVGFSRVTSYMDWIQQNTGI  228 (230)
T ss_dssp             EEEEEEEECCTTCT-TSCCCEEEEEGGGGHHHHHHHHCC
T ss_pred             EEEEEEEEeCCCCC-CCCCCCEEEEhHHhHHHHHHhhCc
Confidence            7999999986  56 557899999999999999999875

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=100.00  E-value=9.9e-36  Score=227.63  Aligned_cols=173  Identities=27%  Similarity=0.517  Sum_probs=146.3

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      ++..+.|++|.++....... ..+.+.|.+++.| +|+  .....||||||+|++|+.|+++++|+|||...... .+..
T Consensus        47 ~~~~~~V~~G~~~~~~~~~~-~~~~~~v~~i~~h-~y~--~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~~~~~~~~  122 (225)
T 1a7s_A           47 NPGVSTVVLGAYDLRRRERQ-SRQTFSISSMSEN-GYD--PQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTR  122 (225)
T ss_dssp             -CCSEEEEESCSSTTSCCTT-TCEEEEEEEEECS-SCB--TTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCE
T ss_pred             CCCceEEEEeeeECCCCCCc-ceeEEeEEEEecc-ccc--CCCCcCCEEEEEcCCcccCCCceeEEEcCCCcCCCCCCCE
Confidence            45679999999887764432 2389999999999 997  46788999999999999999999999999876533 5889


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |.++|||........ +..|+...+.+++.+.|..             .++|++........|.||+||||+|.+    +
T Consensus       123 ~~v~GwG~~~~~~~~-~~~l~~~~~~~~~~~~C~~-------------~~~Ca~~~~~~~~~C~GDSGgPl~~~g----~  184 (225)
T 1a7s_A          123 CQVAGWGSQRSGGRL-SRFPRFVNVTVTPEDQCRP-------------NNVCTGVLTRRGGICNGDGGTPLVCEG----L  184 (225)
T ss_dssp             EEEEESCCSSTTCCC-CSSCEEEEEEECCGGGSCT-------------TEEEEECSSSSCBCCTTCTTCEEEETT----E
T ss_pred             EEEEeCCcCCCCCCc-ccccceeeeEECCHHHhcc-------------CceEEeccCCCCCcccCCCcchheeCC----E
Confidence            999999988755433 6789999999999999964             689998765567899999999999973    6


Q ss_pred             EEEEEEec-CCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        165 LIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       165 lvGv~s~~-~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      |+||+||+ ..|...  |.+||||+.|++||+++|+..+
T Consensus       185 l~Gi~S~g~~~C~~~--p~vyt~V~~~~~WI~~~~~~~~  221 (225)
T 1a7s_A          185 AHGVASFSLGPCGRG--PDFFTRVALFRDWIDGVLNNPG  221 (225)
T ss_dssp             EEEEEEEECSSTTSS--CEEEEEGGGGHHHHHHHHHSCS
T ss_pred             EEEEEEEccCCcCCC--CcEEEEhHHhHHHHHHHhcCCC
Confidence            99999999 567664  9999999999999999998754

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=100.00  E-value=7.8e-36  Score=255.24  Aligned_cols=184  Identities=27%  Similarity=0.442  Sum_probs=121.1

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCC----CccceecCCCCCCc-
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMP----HIAPICLPEKGEDF-   80 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~----~i~picl~~~~~~~-   80 (203)
                      .+..+.|++|.++...... ...+.+.|.+|++||+|+  ..++.||||||+|++|+.+++    .++|||||...... 
T Consensus       368 ~~~~~~V~~G~~~~~~~~~-~~~~~~~V~~ii~Hp~Y~--~~~~~nDIALlkL~~~v~~~~~~~~~v~PicLp~~~~~~~  444 (565)
T 2xrc_A          368 KTHRYQIWTTVVDWIHPDL-KRIVIEYVDRIIFHENYN--AGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQ  444 (565)
T ss_dssp             SSCCEEEEC--------------CEEEEEEEEECTTCC--TTTCTTCCEEEEECCCSSSSCSCCTTCCCCBCCSCTTSSC
T ss_pred             CCcceEEEEEEeeccCCCC-CccEEEEEEEEEeCCCCC--CCcccccceeeeeccccccccccccceeeeecCCcccccC
Confidence            4567899999988765431 136788999999999997  567899999999999998764    68999999775433 


Q ss_pred             cCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee-
Q psy12782         81 LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-  159 (203)
Q Consensus        81 ~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-  159 (203)
                      .+..++++|||....+.  .+..|+.+.+.+++.  |...+...    .....|||++....+.+.|+||+||||++.. 
T Consensus       445 ~g~~~~v~GWG~t~~~~--~~~~L~~~~v~i~~~--C~~~~~~~----~~~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~  516 (565)
T 2xrc_A          445 PNDTCIVSGWGREKDNE--RVFSLQWGEVKLISN--CSKFYGNR----FYEKEMECAGTYDGSIDACKGDSGGPLVCMDA  516 (565)
T ss_dssp             TTCEEEEEC---------------CEEEEEECSC--THHHHTTS----CCTTTEEEEEEC----------CCCEEEEECT
T ss_pred             CCCEEEEEeCccCCCCC--ccceeeEEeeeehHH--hHHhhccC----cCCCceEEeCCCCCCCccCCCccccceEEEeC
Confidence            58899999999876543  257799999999873  98877643    2445599999766667899999999999975 


Q ss_pred             CCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        160 TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       160 ~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      +++|+|+||+||+..|+..+.|++||||+.|++||+++|+.
T Consensus       517 ~~~~~lvGIvS~G~~C~~~~~PgVYTrVs~y~~WI~~~i~~  557 (565)
T 2xrc_A          517 NNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYHVGR  557 (565)
T ss_dssp             TCCEEEEEEECC------CCCCEEEEEGGGGHHHHHHHC--
T ss_pred             CCcEEEEEEEeeCCCCCCCCCCEEEEEHHHHHHHHHHHhcc
Confidence            68999999999999998888899999999999999999875

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=100.00  E-value=6.7e-35  Score=256.19  Aligned_cols=181  Identities=30%  Similarity=0.557  Sum_probs=153.7

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      .+..+.|++|.++......  ..+.+.|.++++||.+        ||||||+|++|+.|++.|+|||||...... .+..
T Consensus       610 ~~~~~~V~lG~~~~~~~~~--~~q~~~V~~i~~hp~~--------nDIALLkL~~pv~~s~~V~PIcLP~~~~~~~~g~~  679 (791)
T 4dur_A          610 RPSSYKVILGAHQEVNLEP--HVQEIEVSRLFLEPTR--------KDIALLKLSSPAVITDKVIPACLPSPNYVVADRTE  679 (791)
T ss_dssp             CGGGCEEEESCCBSSSCCT--TCEEEEEEEEEECTTC--------CSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCE
T ss_pred             CCceEEEEeccccccCCCC--ccEEEEEEEEECCCCC--------CceEEEEecCccccCCceeeeeccCcccccCCCCE
Confidence            4577999999988766544  3789999999999963        599999999999999999999999876443 5788


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |.++|||......  .+..|+.+.+.+++.+.|......   ...+.+.|||++....+.+.|+||+||||++..+++|+
T Consensus       680 ~~vsGWG~t~~~~--~s~~L~~~~v~ii~~~~C~~~~~~---~~~i~~~~iCAg~~~gg~daC~GDSGGPLv~~~~~~~~  754 (791)
T 4dur_A          680 CFITGWGETQGTF--GAGLLKEAQLPVIENKVCNRYEFL---NGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYI  754 (791)
T ss_dssp             EEEEECCCC---C--CTTBCEEEEEEEECHHHHTSTTTT---TTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEETTEEE
T ss_pred             EEEEEeCCCCCCC--CCCeeEEEEEEEeCHHHhhccccc---CCCCCCCeEEeccCCCCCCCCCCCcccceEEEeCCeEE
Confidence            9999999876432  267899999999999999875221   11478999999877667899999999999999999999


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |+||+||+..|+..+.|+|||||+.|++||+++|+.+
T Consensus       755 LvGIvS~G~gC~~~~~PgVYTrVs~y~dWI~~~i~~N  791 (791)
T 4dur_A          755 LQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRNN  791 (791)
T ss_dssp             EEEECCTTTCCBBTTBCEEEEEGGGTHHHHHHHHHHC
T ss_pred             EEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHHHhC
Confidence            9999999999998889999999999999999999853

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=1e-34  Score=221.31  Aligned_cols=170  Identities=26%  Similarity=0.492  Sum_probs=143.4

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      +++.+.|++|.++....+.  ..+.+.|.+++.| +|+  .....||||||+|++|+.|++.++|+|||...... .+..
T Consensus        50 ~~~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~h-~y~--~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~  124 (221)
T 1fuj_A           50 PQRLVNVVLGAHNVRTQEP--TQQHFSVAQVFLN-NYD--AENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQ  124 (221)
T ss_dssp             CGGGEEEEESCSBTTSCCT--TCEEEEEEEEEEC-CCB--TTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCE
T ss_pred             CCCceEEEEeeeeccCCCC--ceEEEEEEEEEeC-CCC--CCCCcccEEEEEeCCccccCCcceeeECCCCcCCCCCCCE
Confidence            3457999999998776544  3789999999999 887  46788999999999999999999999999876533 5889


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |.++|||........ +..|+...+.++ .+.|..             .++|++........|.||+||||+|++    +
T Consensus       125 ~~~~GwG~~~~~~~~-~~~l~~~~~~~~-~~~C~~-------------~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~  185 (221)
T 1fuj_A          125 CLAMGWGRVGAHDPP-AQVLQELNVTVV-TFFCRP-------------HNICTFVPRRKAGICFGDSGGPLICDG----I  185 (221)
T ss_dssp             EEEEESSBSCSSSCB-CSBCEEEEEEEE-CTTCCT-------------TEEEEECSSSSCBCCTTCTTCEEEETT----E
T ss_pred             EEEEEeCCCCCCCCH-HHHhhcccceEE-eeecCC-------------ceeeeccCCCCCCCCCCCCCCeeEECC----E
Confidence            999999988755433 678999999999 777864             289998765567899999999999953    5


Q ss_pred             EEEEEEecC-CCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        165 LIGIVSAGY-SCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       165 lvGv~s~~~-~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      |+||+|++. +|...+.|.+||||++|++||+++|+
T Consensus       186 l~Gi~s~~~~gC~~~~~p~vyt~v~~~~~WI~~~i~  221 (221)
T 1fuj_A          186 IQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             EEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             EeEEEEEeccCCCCCCCCcEEEeHHHHHHHHHHHhC
Confidence            999999954 48877789999999999999999885

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=100.00  E-value=1.2e-33  Score=238.86  Aligned_cols=186  Identities=25%  Similarity=0.457  Sum_probs=143.2

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCC-------CCCCCCeEEEEECCCcCCCCCccceecCCCCC
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTP-------QADRYDVAVLRLDRPVQYMPHIAPICLPEKGE   78 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-------~~~~~DiALl~L~~~~~~~~~i~picl~~~~~   78 (203)
                      .+..+.|++|..          .+.+.|.++++||+|+...       .++.||||||+|++|+.|+++++|||||....
T Consensus       266 ~~~~~~v~~G~~----------~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~  335 (497)
T 1rrk_A          266 KEHSIKVSVGGE----------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEG  335 (497)
T ss_dssp             CGGGEEEEETTC----------SSCEEEEEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHH
T ss_pred             CceEEEEEeCCc----------cceeeeEEEEeCCCccccccccccccccCCCcEEEEEECCCCcCCCCeeeeeCCCCCc
Confidence            346788999863          4568999999999998421       36789999999999999999999999997531


Q ss_pred             ------CccCceeEEeecccccCCC------CCCccCceEEEEeeeC---hhhHhhHhhhC-C------CcccccCCeEE
Q psy12782         79 ------DFLGQFGWAAGWGALQAGS------RLRPKTLQAVDVPIID---NRQCERWHKSN-G------INVVIYDEMMC  136 (203)
Q Consensus        79 ------~~~~~~~~~~Gwg~~~~~~------~~~~~~l~~~~~~~~~---~~~C~~~~~~~-~------~~~~~~~~~~C  136 (203)
                            ...+..|++.|||......      ......|+..++.+++   .+.|....... .      ....+++.|||
T Consensus       336 ~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iC  415 (497)
T 1rrk_A          336 TTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLC  415 (497)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEE
T ss_pred             cccccccCCCCchhcccccccCCccccceeeccCCCcceeeeEEEecCcccchhhhhhhhcccccccccccccCCCCeEE
Confidence                  1247788899998654321      0124679999999998   78998743210 0      11247899999


Q ss_pred             eeeeCC--CCCCCcCCCCCeeEEeeCCcEEEEEEEEecC--CCC----CCCCCe----EEEeCCCCHHHHHHhhccc
Q psy12782        137 AGYRGG--AKDSCQGDSGGPLMMERTGRWFLIGIVSAGY--SCA----QQGQPG----IYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       137 ~~~~~~--~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~--~c~----~~~~~~----v~t~v~~~~~WI~~~i~~~  201 (203)
                      ++....  +.+.|+||+||||+|..+++|+|+||+||+.  .|+    ..+.|.    +||+|+.|++||+++|+.+
T Consensus       416 ag~~~~~~~~~~C~GDSGGPL~~~~~~~~~l~GIvS~g~~~~C~~~~~~~~~P~~~r~vyt~V~~~~~WI~~~~~~~  492 (497)
T 1rrk_A          416 TGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE  492 (497)
T ss_dssp             EESSSSSCCCCCCGGGTTCEEEEEETTEEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTTTS
T ss_pred             eCCCCCCCCCcCCCCCCCCeeEEEeCCEEEEEEEEEecCCCCCCCccccCCCCCccceeeeeHHHHHHHHHHHhCcc
Confidence            986532  4689999999999999999999999999997  687    456675    9999999999999999864

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=100.00  E-value=2.5e-33  Score=237.56  Aligned_cols=189  Identities=22%  Similarity=0.370  Sum_probs=140.8

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCC-------CCCCCCeEEEEECCCcCCCCCccceecCCCCC
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTP-------QADRYDVAVLRLDRPVQYMPHIAPICLPEKGE   78 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-------~~~~~DiALl~L~~~~~~~~~i~picl~~~~~   78 (203)
                      .+..+.|++|.++..      ..+.+.|.++++||+|+...       .++.||||||+|++|+.|+++++|||||....
T Consensus       271 ~~~~~~V~~G~~~~~------~~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~  344 (509)
T 2odp_A          271 DHSLWRVNVGDPKSQ------WGKEFLIEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTME  344 (509)
T ss_dssp             ----CEEEECCTTCT------TCEEECEEEEEECTTCCTTTTGGGTCCCCCTTCCEEEEESSCCCCBTTBCCCBCTTBHH
T ss_pred             CcceEEEEeCCcccC------CCceeeeEEEEECCCCccccccccccccccCCCeEEEEECCcccCCCCcccccCCCCcc
Confidence            346789999997643      26889999999999998421       36789999999999999999999999997532


Q ss_pred             ------CccCceeEEeecccccCCCCCC---ccCceEEEEeee---ChhhHhhHhhhC--------CCcccccCCeEEee
Q psy12782         79 ------DFLGQFGWAAGWGALQAGSRLR---PKTLQAVDVPII---DNRQCERWHKSN--------GINVVIYDEMMCAG  138 (203)
Q Consensus        79 ------~~~~~~~~~~Gwg~~~~~~~~~---~~~l~~~~~~~~---~~~~C~~~~~~~--------~~~~~~~~~~~C~~  138 (203)
                            ...+..|.+.|||.........   ....+...+.++   +.+.|...+...        .....+++.|||++
T Consensus       345 ~~~~~~~~~g~~~~~~g~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag  424 (509)
T 2odp_A          345 ANLALRRPQGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSG  424 (509)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHSCSSEEEEEEECTTSCEEEEEEECTHHHHHHHHGGGGCTTTCTTCSSGGGTSCTTEEEEC
T ss_pred             cchhhccCCCCccccccccccccccceeeeecccCceeeEEEecCccHHHHHHHhhcccccccccccccccccCCEEEeC
Confidence                  1247788889998654322110   011245566664   588998853210        01124789999998


Q ss_pred             eeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecC--CCC---------CCCCC------eEEEeCCCCHHHHHHhhccc
Q psy12782        139 YRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGY--SCA---------QQGQP------GIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       139 ~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~--~c~---------~~~~~------~v~t~v~~~~~WI~~~i~~~  201 (203)
                      . ..+.+.|+||+||||+|..+++|+|+||+|||.  .|+         .+..|      .+||||+.|++||+++++..
T Consensus       425 ~-~~~~~~C~GDSGGPL~~~~~~~~~l~GIvS~G~~~~C~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~~~~WI~~~~~~~  503 (509)
T 2odp_A          425 T-QEDESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLGDV  503 (509)
T ss_dssp             C-TTCCCCCGGGTTCEEEEEETTEEEEEEEEEEESCCTTC-----CCCCCCCTTCSSCCCEEEEEGGGCHHHHHHHHTTT
T ss_pred             C-CCCCcccCCCccCceEEEECCeEEEEEEEEEcCCCCCCCcccccccccCcccCCCCCCceeeeHHHHhHHHHHHhCCc
Confidence            5 455789999999999999999999999999997  586         23445      59999999999999999864

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.98  E-value=4.8e-32  Score=238.75  Aligned_cols=186  Identities=24%  Similarity=0.434  Sum_probs=146.3

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCC-------CCCCCCeEEEEECCCcCCCCCccceecCCCCC
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTP-------QADRYDVAVLRLDRPVQYMPHIAPICLPEKGE   78 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-------~~~~~DiALl~L~~~~~~~~~i~picl~~~~~   78 (203)
                      .+..+.|++|..          .+.+.|.++++||+|+...       ..+.||||||+|++|+.|+++++|||||....
T Consensus       508 ~~~~~~V~~G~~----------~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALlkL~~pv~~s~~v~picLp~~~~  577 (741)
T 3hrz_D          508 KEHSIKVSVGGE----------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEG  577 (741)
T ss_dssp             --CCEEEEETTC----------SCCEEEEEEEECTTCCTTTTGGGTCSCCCTTCCEEEEESSCCCCCSSCCCCBCTTBHH
T ss_pred             CcceEEEEeCCC----------ceEEEEEEEEECCCCCcccccccccCCccCCcEEEEEECCcCcCCCCccccccCCccc
Confidence            456788999953          3568999999999998432       34789999999999999999999999996431


Q ss_pred             ------CccCceeEEeecccccCCCC------CCccCceEEEEeeeC---hhhHhhHhhhC-------CCcccccCCeEE
Q psy12782         79 ------DFLGQFGWAAGWGALQAGSR------LRPKTLQAVDVPIID---NRQCERWHKSN-------GINVVIYDEMMC  136 (203)
Q Consensus        79 ------~~~~~~~~~~Gwg~~~~~~~------~~~~~l~~~~~~~~~---~~~C~~~~~~~-------~~~~~~~~~~~C  136 (203)
                            ...+..|.+.|||.......      .....|+...+.+++   .+.|...+...       .+...+++.|||
T Consensus       578 ~~~~~~~~~~~~~~~~gwg~~~~~~~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lC  657 (741)
T 3hrz_D          578 TTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLC  657 (741)
T ss_dssp             HHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEE
T ss_pred             ccchhccCCCCccccccccccccccccceeccccccccccceeEeecCcccchhhhhhhhccccccccccccccCCCeEe
Confidence                  12578899999997654321      125678999999998   88998844321       112358899999


Q ss_pred             eeeeC--CCCCCCcCCCCCeeEEeeCCcEEEEEEEEecC--CCCC---CCCC-----eEEEeCCCCHHHHHHhhccc
Q psy12782        137 AGYRG--GAKDSCQGDSGGPLMMERTGRWFLIGIVSAGY--SCAQ---QGQP-----GIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       137 ~~~~~--~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~--~c~~---~~~~-----~v~t~v~~~~~WI~~~i~~~  201 (203)
                      ++...  .+...|+||+||||++..+++|+|+||+|||.  .|..   .+.|     .+||+|+.|++||+++|+.+
T Consensus       658 ag~~~~~~~~~~C~GDSGGPL~~~~~~~~~lvGIvS~G~~~~C~~~~~~~~p~~~~~~vyt~V~~~~~WI~~~i~~~  734 (741)
T 3hrz_D          658 TGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE  734 (741)
T ss_dssp             EESSSSSCCCCCCGGGTTCEEEEEETTEEEEEEEEEEESSCCCC------CCCTTCEEEEEEGGGSHHHHHHHTTTS
T ss_pred             cCCcCCCCCCCcCcCcccCceEEeeCCeEEEEEEEeecCCcccCCcccccCCCCCccceEEEhHHhHHHHHHHhcCC
Confidence            98654  24689999999999999999999999999997  7987   5788     99999999999999999874

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=99.95  E-value=1.4e-30  Score=197.66  Aligned_cols=155  Identities=18%  Similarity=0.163  Sum_probs=125.9

Q ss_pred             eEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEee
Q psy12782         10 VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAG   89 (203)
Q Consensus        10 ~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~G   89 (203)
                      +.|++|..+....     .+.+.|.++++||+|+ ......||||||+|++|  |++.++|+|||.... ..+..|.++|
T Consensus        61 ~~v~~G~~~~~~~-----~~~~~v~~i~~hp~y~-~~~~~~~DiAll~L~~~--~~~~v~pi~l~~~~~-~~g~~~~~~G  131 (215)
T 1p3c_A           61 GSVYPGMNDSTAV-----NGSANMTEFYVPSGYI-NTGASQYDFAVIKTDTN--IGNTVGYRSIRQVTN-LTGTTIKISG  131 (215)
T ss_dssp             CEEEETCBTTBCT-----TCCEEEEEEECCHHHH-HHCCGGGCCEEEEESSC--HHHHHCCCCBCCCSC-CTTCEEEEEE
T ss_pred             eEEEEcccCCCCC-----CCeEEEEEEEeCCccc-cCCCcccCEEEEEECCC--CcccceeeecCCCcc-cCCCeEEEec
Confidence            4999999876653     4478999999999994 13567899999999997  568899999998764 4689999999


Q ss_pred             cccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEE
Q psy12782         90 WGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIV  169 (203)
Q Consensus        90 wg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~  169 (203)
                      ||......  ....++...+.+++.+.|...+                    .....|.||+||||++.+ +  +|+||+
T Consensus       132 wg~~~~~~--~~~~l~~~~~~~~~~~~c~~~~--------------------~~~~~C~GDSGgPl~~~~-g--~lvGi~  186 (215)
T 1p3c_A          132 YPGDKMRS--TGKVSQWEMSGSVTREDTNLAY--------------------YTIDTFSGNSGSAMLDQN-Q--QIVGVH  186 (215)
T ss_dssp             CCHHHHHH--HSSCCCEEEEEECCEECSSEEE--------------------ECCCCCTTCTTCEEECTT-S--CEEEEC
T ss_pred             CCCCCccc--ccceechhccCccCcccchhee--------------------eccccCCCCCCCeeEccC-C--eEEEEE
Confidence            99764422  1457889999999999886532                    135789999999999952 3  699999


Q ss_pred             EecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        170 SAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       170 s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      ||+..|+  ..|.+|++|++|++||++++++
T Consensus       187 S~g~~c~--~~p~v~t~v~~~~~WI~~~~~~  215 (215)
T 1p3c_A          187 NAGYSNG--TINGGPKATAAFVEFINYAKAQ  215 (215)
T ss_dssp             CEEEGGG--TEEEEEBCCHHHHHHHHHHHTC
T ss_pred             ecccCCC--ccCceeEechHHHHHHHHHhcC
Confidence            9998886  6699999999999999998864

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.93  E-value=4.9e-26  Score=151.58  Aligned_cols=94  Identities=39%  Similarity=0.844  Sum_probs=84.4

Q ss_pred             ccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCC
Q psy12782        101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQ  180 (203)
Q Consensus       101 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~  180 (203)
                      +..|+.+++++++.++|+..+..     .+.+.+||++.  .+.+.|.||+||||++..+++|+|+||+||+..|+..+.
T Consensus         4 ~~~L~~~~v~i~~~~~C~~~~~~-----~i~~~~iCa~~--~~~~~C~GDSGGPL~~~~~~~~~l~GIvS~g~~c~~~~~   76 (97)
T 1yph_E            4 PDRLQQASLPLLSNTNCKKYWGT-----KIKDAMICAGA--SGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTST   76 (97)
T ss_dssp             CSBCEEEEEEBCCHHHHHHHHGG-----GCCTTEEEEEC--SSCBCCTTCTTCEEEEEETTEEEEEEEEEECCTTCCTTS
T ss_pred             CccceEEEEEECCHHHhhHHhcC-----CCCCceEeecC--CCCCCCcCCCCCcEEEEeCCeEEEEEEEEeCCCCCCCCC
Confidence            56799999999999999987754     37899999983  346899999999999998999999999999999988888


Q ss_pred             CeEEEeCCCCHHHHHHhhccc
Q psy12782        181 PGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       181 ~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |.+||||+.|++||+++++.+
T Consensus        77 p~vyt~V~~y~~WI~~~~~~n   97 (97)
T 1yph_E           77 PGVYARVTALVNWVQQTLAAN   97 (97)
T ss_dssp             EEEEEEHHHHHHHHHHHHHHC
T ss_pred             CeEEEEHHHhHHHHHHHHccC
Confidence            999999999999999998753

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.84  E-value=1.2e-22  Score=150.49  Aligned_cols=122  Identities=16%  Similarity=0.195  Sum_probs=92.0

Q ss_pred             CCCeEEEEECC-CcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcc
Q psy12782         50 RYDVAVLRLDR-PVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV  128 (203)
Q Consensus        50 ~~DiALl~L~~-~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~  128 (203)
                      .+|||||||++ ++.+++.++|++++.......++.+.++||+..     .....++..++.+. ...|. .+.      
T Consensus        61 ~~DiAll~l~~~~~~~~~~v~~~~l~~~~~~~~g~~v~~~Gw~~~-----~~~g~l~~~~~~v~-~~~~~-~~~------  127 (185)
T 2qa9_E           61 NNDYGIVRYTNTTIPKDGTVGGQDITSAANATVGMAVTRRGSTTG-----THSGSVTALNATVN-YGGGD-VVY------  127 (185)
T ss_dssp             BSCEEEEEECCSSSCCCCEETTEECCEECCCCTTCEEEEEETTTE-----EEEEEEEEEEEEEE-CSTTC-EEE------
T ss_pred             CCCEEEEEecCCCccccCccceeeeCCcccCCCCCEEEEecCCCc-----eeEeEEEEEEEEEE-cCCCC-EEe------
Confidence            57999999999 999999999999975433346899999999642     11345777776652 22332 111      


Q ss_pred             cccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHh
Q psy12782        129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYI  197 (203)
Q Consensus       129 ~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~  197 (203)
                      .+...++|+         |+|||||||++.+    .|+||+||+..|+..+.|.+|++|+.|++||+..
T Consensus       128 ~~~~~~~ca---------c~GDSGGPlv~~~----~~vGI~s~g~~~~~~~~p~vyt~v~~~~~wI~~~  183 (185)
T 2qa9_E          128 GMIRTNVCA---------EPGDSGGPLYSGT----RAIGLTSGGSGNCSSGGTTFFQPVTEALSAYGVS  183 (185)
T ss_dssp             EEEEESCCC---------CTTCTTCEEEETT----EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHTCE
T ss_pred             ceEEecccC---------CCCCccceEEECC----EEEEEEEecCCCCCCCCcEEEEEHHHHHHhhCcE
Confidence            123456665         9999999999863    5999999998877777899999999999999754

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=99.83  E-value=6.5e-22  Score=150.27  Aligned_cols=158  Identities=15%  Similarity=0.090  Sum_probs=107.7

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCC--cCCCCCcc-ceecCCCCCCccCce
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP--VQYMPHIA-PICLPEKGEDFLGQF   84 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~--~~~~~~i~-picl~~~~~~~~~~~   84 (203)
                      ..+.|++|..+...     +.+.+.|.++++||+|+. .....||||||||++|  +.+++.++ +++|+...  ..+..
T Consensus        53 ~~~~v~~G~~~~~~-----~~~~~~v~~~~~hp~y~~-~~~~~~DiAll~L~~~~~~~~~~~v~~~~~l~~~~--~~g~~  124 (218)
T 3cp7_A           53 RNFVFAPAYDYGES-----EHGVWAAEELVTSAEWAN-RGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQ--PRGQY  124 (218)
T ss_dssp             EEEEEEETCSSSCC-----TTCCEEEEEEEECHHHHH-HCCGGGCCEEEEECCBTTBCHHHHHSCCBCBCCSC--CSSCE
T ss_pred             cCEEEECcccCCCC-----CccEEEEEEEEECccccc-CCCCcCCEEEEEEeCCCCcChhHhcCcccceeecC--CCCCE
Confidence            56888899765432     245788999999999962 2356899999999999  78888888 99998643  35788


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |.++|||......   ...+          ..|........+ ......|+|+.        |.|||||||++..+++++
T Consensus       125 ~~v~GwG~~~~~~---~~~l----------~~C~~~~~~~~~-~~~~~~~~Ca~--------~~GDSGGPlv~~~~g~~~  182 (218)
T 3cp7_A          125 YSAYGYPAAAPFN---GQEL----------HSCHGTATNDPM-GSSTQGIPCNM--------TGGSSGGPWFLGNGTGGA  182 (218)
T ss_dssp             EEEEECCCSTTCC---SSSC----------EEEEEECEECTT-SSSCEEEECCC--------CTTCTTCEEEESSSSSSC
T ss_pred             EEEEeCCCCCCCC---Ccee----------eEeeeeEEcCCC-CCceEEecCCC--------CCCCcCCeeEEccCCCeE
Confidence            9999999754211   1112          345432110000 01233789972        579999999998767788


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      |+||+||+..|...   ..|.  .+|-+.++.....
T Consensus       183 lvGIvS~G~gc~~~---~~~~--p~~~~~~~~l~~~  213 (218)
T 3cp7_A          183 QNSTNSYGYTFLPN---VMFG--PYFGSGAQQNYNY  213 (218)
T ss_dssp             EEEECCEEETTEEE---EEEE--CCCCHHHHHHHHH
T ss_pred             EEEEEccccCCCCC---cEEc--CcCCHHHHHHHHH
Confidence            99999999888542   2332  3456777666554

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.79  E-value=1.3e-18  Score=136.38  Aligned_cols=149  Identities=13%  Similarity=0.124  Sum_probs=104.4

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCc---CCCCCccceecCCCCCCccCce
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV---QYMPHIAPICLPEKGEDFLGQF   84 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~---~~~~~i~picl~~~~~~~~~~~   84 (203)
                      ..+.|++|..+.....+    ..+.+.+++.|+.        .+|||||||++++   .|+..+.|+||+.......+..
T Consensus        61 ~~i~V~~G~~~~~~~~~----g~~~~~~i~~~~~--------~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~  128 (274)
T 2o8l_A           61 HALKAFPSAINQDNYPN----GGFTAEQITKYSG--------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQN  128 (274)
T ss_dssp             GGEEEEETCCBTTBCTT----CCEEEEEEEECSS--------SSCCEEEEECCCTTSCCTTTSSCCCEECCCTTCCTTCE
T ss_pred             ceEEEEecccCcccccC----ccEEEEEEEeCCC--------CCcEEEEEecCcccccccccccccccccccccccCCCE
Confidence            46899999876543222    2567888988873        4699999999997   4788999999986543346899


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      |+++|||.....      .++......+.               .+...++|..     ...|.|||||||++.. +  .
T Consensus       129 v~v~Gwg~~~~~------~~~~~~~g~i~---------------~~~~~~i~~~-----~~~c~GdSGGPLv~~~-g--~  179 (274)
T 2o8l_A          129 ITVTGYPGDKPV------ATMWESKGKIT---------------YLKGEAMQYD-----LSTTGGNSGSPVFNEK-N--E  179 (274)
T ss_dssp             EEEEECCTTSST------TCEEEEEEEEE---------------EEETTEEEES-----CCCCTTCTTCEEECTT-S--C
T ss_pred             EEEEECCCCCCC------ceEEecCceEE---------------ecCCCeEEeC-----cccCCCCchhheeccC-C--e
Confidence            999999964211      11111111111               0234567753     5789999999999742 3  4


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      |+||+||+..|+..  +.+|+ ++.|++||++.|..
T Consensus       180 lvGIvS~G~~~~~~--~~~~~-~~~~~~wI~~~i~~  212 (274)
T 2o8l_A          180 VIGIHWGGVPNEFN--GAVFI-NENVRNFLKQNIED  212 (274)
T ss_dssp             EEEEEEEEETTTEE--EEEEC-CHHHHHHHHHHCTT
T ss_pred             EEEEEeCcccCCCC--ceEEe-cHHHHHHHHHHHhh
Confidence            99999999888642  45544 78899999998864

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.78  E-value=6.9e-19  Score=137.52  Aligned_cols=149  Identities=13%  Similarity=0.133  Sum_probs=104.9

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCc---CCCCCccceecCCCCCCccCce
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV---QYMPHIAPICLPEKGEDFLGQF   84 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~---~~~~~i~picl~~~~~~~~~~~   84 (203)
                      ..+.|++|..+......    ..+.+.+++.|+.        .+|||||||++++   .|+..+.|+||+.......+..
T Consensus        61 ~~i~V~~G~~~~~~~~~----g~~~~~~i~~~~~--------~~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~  128 (268)
T 1wcz_A           61 HALKAFPSAINQDNYPN----GGFTAEQITKYSG--------EGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQN  128 (268)
T ss_dssp             GGEEEEETCCBTTBCTT----CCEEEEEEEECSS--------SSCCEEEEECCCTTSCCHHHHSCCCCBCCCSSCCTTCE
T ss_pred             ceEEEEecccCcccccC----CcEEEEEEecCCC--------CCcEEEEEecCcccccccccccceeecccccccCCCCE
Confidence            56899999876543222    2467888888862        4699999999997   4667899999986543346899


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      ++++|||....      ..++.....++..               +...++|..     ...|.|||||||++.. +  .
T Consensus       129 v~v~Gwg~~~~------~~~~~~~~g~i~~---------------~~~~~i~~~-----~~~c~GdSGGPLv~~~-g--~  179 (268)
T 1wcz_A          129 ITVTGYPGDKP------VATMWESKGKITY---------------LKGEAMQYD-----LSTTGGNSGSPVFNEK-N--E  179 (268)
T ss_dssp             EEEEECCTTSS------TTCEEEEEEEEEE---------------EETTEEEES-----BCCCTTCTTCEEECTT-S--C
T ss_pred             EEEEECCCCCC------CceEEeecceEEe---------------eCCCeEEEe-----cccCCCCccCeEEccC-C--E
Confidence            99999995421      1122222222221               235577753     5789999999999732 2  4


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      |+||+||+..|+. + +.+|+ ++.|++||++.|..
T Consensus       180 lvGIvS~G~~~~~-~-~~~~~-~~~~~~wI~~~i~~  212 (268)
T 1wcz_A          180 VIGIHWGGVPNEF-N-GAVFI-NENVRNFLKQNIED  212 (268)
T ss_dssp             EEEEEEEEETTTE-E-EEEEC-CHHHHHHHHHHCTT
T ss_pred             EEEEEeCCccCCc-c-eeEEc-CHHHHHHHHHHHHh
Confidence            9999999988864 2 45554 78899999998864

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.75  E-value=4.2e-19  Score=138.37  Aligned_cols=125  Identities=14%  Similarity=0.157  Sum_probs=84.1

Q ss_pred             eeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCC------CccCce
Q psy12782         32 GVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRL------RPKTLQ  105 (203)
Q Consensus        32 ~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~------~~~~l~  105 (203)
                      .+..+++|+.       ..||||||||++|++                 .+..+.++|||+.......      +...++
T Consensus       100 ~v~~~i~h~~-------~~nDIALLrL~~~v~-----------------~~~~~~vsGWG~t~~~~~~~~~~~~~~~~l~  155 (268)
T 1arb_A          100 QSGSTVKATY-------ATSDFTLLELNNAAN-----------------PAFNLFWAGWDRRDQNYPGAIAIHHPNVAEK  155 (268)
T ss_dssp             EECEEEEEEE-------TTTTEEEEEESSCCC-----------------GGGCCEEBCEECCSCCCSCEEEEECGGGCSC
T ss_pred             eccceEecCC-------CCCceEEEEecCCCC-----------------CCCceEEeCcCccCCCCCcceeeccCCcccE
Confidence            3778888982       368999999999852                 2446799999987654321      012344


Q ss_pred             EEEEeeeChh-hHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecC-CCCCC--CCC
Q psy12782        106 AVDVPIIDNR-QCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGY-SCAQQ--GQP  181 (203)
Q Consensus       106 ~~~~~~~~~~-~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~-~c~~~--~~~  181 (203)
                      .+.+...... .|   +..     .+.+.|+|++........|.||+||||++..   ++|+||+||+. .|...  +.|
T Consensus       156 ~i~~~~~~~~~~~---~~~-----~~~~~~iCag~~~~~gdtC~gdsGgPl~~~~---~~~~Gi~s~g~~~C~~~~~~~p  224 (268)
T 1arb_A          156 RISNSTSPTSFVA---WGG-----GAGTTHLNVQWQPSGGVTEPGSSGSPIYSPE---KRVLGQLHGGPSSCSATGTNRS  224 (268)
T ss_dssp             EEEEECSCCEEEC---TTS-----SSCSSEEEEECCTTSCCCCTTCTTCEEECTT---SCEEEEEEECSCCTTCCGGGSE
T ss_pred             EEEeecccccccc---ccc-----cccCCeEEEeeecCCCCCccCcccCCcEeeC---CEEEEEEeecCcccCCCCCCCC
Confidence            4444443321 12   111     2568999997431123689999999999842   34999999997 58765  389


Q ss_pred             eEEEeCCCCH
Q psy12782        182 GIYHRVAYTV  191 (203)
Q Consensus       182 ~v~t~v~~~~  191 (203)
                      .+||||+.|.
T Consensus       225 ~vyt~v~~~~  234 (268)
T 1arb_A          225 DQYGRVFTSW  234 (268)
T ss_dssp             EEEEEHHHHH
T ss_pred             ceEEEeeeee
Confidence            9999987654

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=99.75  E-value=6.3e-18  Score=118.29  Aligned_cols=82  Identities=21%  Similarity=0.450  Sum_probs=70.3

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGW   86 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~   86 (203)
                      ..+.|++|.++.....+  ..+.+.|.++++||+|+  ..++.||||||||++|+.|+++++|||||...... .+..|+
T Consensus        47 ~~~~v~~G~~~~~~~~~--~~~~~~v~~i~~hp~y~--~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~  122 (131)
T 1yph_C           47 TSDVVVAGEFDQGSSSE--KIQKLKIAKVFKNSKYN--SLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCV  122 (131)
T ss_dssp             TTSEEEESCSBTTCSSS--CCEEEEEEEEEECTTCC--TTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEE
T ss_pred             CCeEEEEeEccCCCCCC--ceEEEEEEEEEeCCCCC--CCCCCCCEEEEEECCcccCCCcCcceECCCcccCCCCCCEEE
Confidence            46789999988765444  37899999999999997  46788999999999999999999999999876543 688999


Q ss_pred             Eeecccc
Q psy12782         87 AAGWGAL   93 (203)
Q Consensus        87 ~~Gwg~~   93 (203)
                      ++|||..
T Consensus       123 v~GWG~t  129 (131)
T 1yph_C          123 TTGWGLT  129 (131)
T ss_dssp             EEESCCS
T ss_pred             EEcCCcc
Confidence            9999965

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.74  E-value=8.4e-18  Score=125.80  Aligned_cols=133  Identities=15%  Similarity=0.219  Sum_probs=87.8

Q ss_pred             ceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCC----cCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccC
Q psy12782         28 AYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRP----VQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKT  103 (203)
Q Consensus        28 ~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~----~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~  103 (203)
                      .+.+.+.+++.   |+     ..+|||||||+.+    +.|++.++|+||+..  ...++.+.++||+......   .  
T Consensus        62 ~~~~~~~~i~~---~~-----~~~DiAll~l~~~~~~~~~~~~~v~pi~l~~~--~~~g~~v~v~G~p~g~~~~---~--  126 (200)
T 2w7s_A           62 GGNYDVKDIVE---YP-----GKEDLAIVHVHETSTEGLNFNKNVSYTKFADG--AKVKDRISVIGYPKGAQTK---Y--  126 (200)
T ss_dssp             CCEECEEEEEE---CS-----SSSSCEEEEECSBCTTSCBGGGSCCCCCBCCC--CCTTCEEEEEECTTHHHHT---S--
T ss_pred             CcEEEEEEEec---CC-----CcceEEEEEECCCCCCcccccccccceecccc--CCCCCEEEEEECCCCCCCc---c--
Confidence            45677777764   32     1469999999985    888889999999732  2368999999986422111   0  


Q ss_pred             ceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCC-CCCCCe
Q psy12782        104 LQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA-QQGQPG  182 (203)
Q Consensus       104 l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~-~~~~~~  182 (203)
                      .+.....+++.               ....++|..     ...|+|||||||++.+ +  .|+||+||+..|+ ....+.
T Consensus       127 ~~~~~~g~v~~---------------~~~~~~~~~-----~~~~~GdSGGPl~~~~-g--~lvGI~s~g~~~~~~~~~~~  183 (200)
T 2w7s_A          127 KMFESTGTINH---------------ISGTFMEFD-----AYAQPGNSGSPVLNSK-H--ELIGILYAGSGKDESEKNFG  183 (200)
T ss_dssp             CEEEEEEEEEE---------------EETTEEEEC-----SCCCTTCTTCEEECTT-S--CEEEEEEEEC----CCCEEE
T ss_pred             ceEEeEEEEEc---------------cCCCEEEEc-----ceeCCCCccCeEECcC-C--EEEEEEeccccCCCCcccee
Confidence            12223333322               123456653     4789999999999742 3  3999999998764 222235


Q ss_pred             E-EEeCCCCHHHHHHhhcc
Q psy12782        183 I-YHRVAYTVDWISYIMNT  200 (203)
Q Consensus       183 v-~t~v~~~~~WI~~~i~~  200 (203)
                      + |+  +.|++||++.|++
T Consensus       184 v~~~--~~~~~wI~~~~~~  200 (200)
T 2w7s_A          184 VYFT--PQLKEFIQNNIEK  200 (200)
T ss_dssp             EECC--HHHHHHHHHTSCC
T ss_pred             eecH--HHHHHHHHhhccC
Confidence            6 55  8899999998863

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.73  E-value=5.5e-18  Score=127.02  Aligned_cols=133  Identities=16%  Similarity=0.232  Sum_probs=90.3

Q ss_pred             ceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECC--------CcCCCCCccceecCCCCCCccCceeEEeecccccCCCCC
Q psy12782         28 AYTFGVRKINVHPYFKFTPQADRYDVAVLRLDR--------PVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRL   99 (203)
Q Consensus        28 ~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~--------~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~   99 (203)
                      .+.+.+.+++.|+.        .+|||||+|+.        ++.|++.+.|+||+..  ...++.+.++|||......  
T Consensus        61 ~~~~~~~~i~~~~~--------~~DiAll~l~~~~~~~~~~~~~~~~~v~pi~l~~~--~~~g~~~~~~G~g~~~~~~--  128 (204)
T 2vid_A           61 GGIYSIKKIINYPG--------KEDVSVIQVEERAIERGPKGFNFNDNVTPFKYAAG--AKAGERIKVIGYPHPYKNK--  128 (204)
T ss_dssp             SCEEEEEEEEECSS--------SSCCEEEEECSEEEEEETTEEEHHHHCCCCCBCSC--CCTTCEEEEEECCCCCC----
T ss_pred             CcEEEeeEEecCCC--------CCeEEEEEEcCcccccccccccccccccccccCCc--CCCCCEEEEEeCCCCCCCC--
Confidence            45678888887652        46999999995        5777778999999852  2368999999999643221  


Q ss_pred             CccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCC---CC
Q psy12782        100 RPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS---CA  176 (203)
Q Consensus       100 ~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~---c~  176 (203)
                        ..+.. ....+..               ....++|..     ...|.|||||||++. ++  .|+||++++..   |.
T Consensus       129 --~~~~~-~~g~v~~---------------~~~~~~~~~-----~~~~~GdSGGPl~~~-~g--~lvGI~s~g~~~~~~~  182 (204)
T 2vid_A          129 --YVLYE-STGPVMS---------------VEGSSIVYS-----AHTESGNSGSPVLNS-NN--ELVGIHFASDVKNDDN  182 (204)
T ss_dssp             --CCCEE-EEEEEEE---------------EETTEEEEC-----CCCCGGGTTCEEECT-TS--CEEEEEEEECC---CC
T ss_pred             --cceEe-eccEEee---------------ccCCeEEEe-----cccCCCCccCcEECC-CC--eEEEEEecCccCCCcc
Confidence              11111 1111111               235678863     578999999999974 22  49999999873   44


Q ss_pred             CCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        177 QQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       177 ~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      ..++ .+|.. +.|++||+++|++
T Consensus       183 ~~~~-~~~~~-~~~~~wI~~~~~~  204 (204)
T 2vid_A          183 RNAY-GVYFT-PEIKKFIAENIDK  204 (204)
T ss_dssp             CCEE-EECCC-HHHHHHHHHHSCC
T ss_pred             cccc-eeEeC-HHHHHHHHhhcCC
Confidence            4333 45444 8899999998863

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.73  E-value=1.1e-17  Score=128.68  Aligned_cols=149  Identities=17%  Similarity=0.142  Sum_probs=100.6

Q ss_pred             eEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcC---CCCCccceecCCCCCCccCceeE
Q psy12782         10 VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ---YMPHIAPICLPEKGEDFLGQFGW   86 (203)
Q Consensus        10 ~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~---~~~~i~picl~~~~~~~~~~~~~   86 (203)
                      +.+..|...........+.+.+.+..+..|| |+     ..+|||||+|+.|+.   |++.++|+||+.......++.++
T Consensus        84 v~~~~G~~~~~~~~~~~~~~~~~~~~i~~~~-~~-----~~~DiAll~l~~~~~~~~~~~~v~~i~L~~~~~~~~g~~~~  157 (242)
T 1agj_A           84 VSFRPSINTDDNGNTETPYGEYEVKEILQEP-FG-----AGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLE  157 (242)
T ss_dssp             EEEEETCEECTTSCEECTTCCEEEEEEESCT-TC-----TTSCCEEEEECCCTTSCCHHHHSCCCEECCSTTCCTTCEEE
T ss_pred             EEEecCccccccccccccCCceeEEEEEeCC-CC-----CCCcEEEEEEcCCCccccccccccceecCccccCCCCCEEE
Confidence            4444477664322111123567889999999 74     468999999999964   56679999998654334689999


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ++|||.....     ..++...+.+.+..                 ..++..     ...|+|||||||++.. +  .|+
T Consensus       158 v~Gwg~~~~~-----~~l~~~~~~~~~~~-----------------~~~~~~-----~~~c~GdSGGPl~~~~-g--~lv  207 (242)
T 1agj_A          158 LIGYPFDHKV-----NQMHRSEIELTTLS-----------------RGLRYY-----GFTVPGNSGSGIFNSN-G--ELV  207 (242)
T ss_dssp             EEECCTTTST-----TCCEEEEEEECCGG-----------------GSEEEE-----CCCCGGGTTCEEECTT-S--EEE
T ss_pred             EEeCCCCCCC-----ccceeeeeeEecCC-----------------ceEEEe-----CCcCCCCCchHhcccC-C--EEE
Confidence            9999965432     23566666665421                 112221     3689999999999742 3  499


Q ss_pred             EEEEecCCCC-CCCCCeEEEeCCCCHHHH
Q psy12782        167 GIVSAGYSCA-QQGQPGIYHRVAYTVDWI  194 (203)
Q Consensus       167 Gv~s~~~~c~-~~~~~~v~t~v~~~~~WI  194 (203)
                      ||+||+..|. ......+.+.|.....|+
T Consensus       208 GI~s~g~~c~~~~~~~~~~~~i~~~~~~~  236 (242)
T 1agj_A          208 GIHSSKVSHLDREHQINYGVGIGNYVKRI  236 (242)
T ss_dssp             EEEEEEEECSSTTCEEEEEEECCHHHHHH
T ss_pred             EEEeccccccCcCCCceeeEEehHHHHHH
Confidence            9999998886 333457788887555544

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.57  E-value=4.3e-16  Score=114.76  Aligned_cols=120  Identities=18%  Similarity=0.241  Sum_probs=82.8

Q ss_pred             CCCeEEEEECCCcCCCCCccce----ecCCC-CCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhC
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPI----CLPEK-GEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN  124 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~pi----cl~~~-~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~  124 (203)
                      .+|||||||+.++.++..++++    +++.. .....++.+.+.||.....     ...++..+..+ +...+.      
T Consensus        53 ~~DiAlikl~~~~~~~~~v~~i~~~~~~~~~~~~~~~G~~v~~~G~~~~~t-----~G~v~~~~~~v-~~~~~~------  120 (181)
T 2sga_A           53 NNDYGIIRHSNPAAADGRVYLYNGSYQDITTAGNAFVGQAVQRSGSTTGLR-----SGSVTGLNATV-NYGSSG------  120 (181)
T ss_dssp             BSCEEEEEESCGGGCCCEEECSSSCEEECCEECCCCTTCEEEEEETTTEEE-----EEEEEEEEEEE-ECGGGC------
T ss_pred             CCCEEEEEccCCCcccceEEecCCcceeecccccCCCCCEEEEeecCCCcc-----EEEEEEeEEEE-ECCCCC------
Confidence            5799999999999888888887    77642 2234688899999874321     23455565554 222221      


Q ss_pred             CCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHH
Q psy12782        125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWIS  195 (203)
Q Consensus       125 ~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~  195 (203)
                           ....+++..     ...|+|||||||++.+    .++||+||+..||....|.+|++|+.|++|+.
T Consensus       121 -----~~~~~i~~~-----~c~~~GDSGGPlv~~~----~~vGI~s~g~~~~~~~~~~v~~~v~~~~~~l~  177 (181)
T 2sga_A          121 -----IVYGMIQTN-----VCAQPGDSGGSLFAGS----TALGLTSGGSGNCRTGGTTFYQPVTEALSAYG  177 (181)
T ss_dssp             -----EEEEEEEES-----CCCCTTCTTCEEEETT----EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHT
T ss_pred             -----EEeeeEecc-----cccCCCCCCCEEEECC----EEEEEEEeeCCCCcCCCceEEEEHHHHHHhcC
Confidence                 011233321     2346899999999864    49999999976444467999999999999985

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=99.53  E-value=8e-14  Score=104.95  Aligned_cols=122  Identities=12%  Similarity=0.182  Sum_probs=81.5

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECC--------CcCCCCCccceecCCCCCC
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDR--------PVQYMPHIAPICLPEKGED   79 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~--------~~~~~~~i~picl~~~~~~   79 (203)
                      ..+.|++|...  .     ..+.+.+.+++.+   +     ..+|||||+|+.        |+.|++.+.|+||+. . .
T Consensus        49 ~~i~v~~~~~~--~-----~g~~~~~~~v~~~---~-----~~~DiAll~l~~~~~~~~~~~~~~~~~v~~i~l~~-~-~  111 (210)
T 2as9_A           49 DRITAHPNGDK--G-----NGGIYKIKSISDY---P-----GDEDISVMNIEEQAVERGPKGFNFNENVQAFNFAK-D-A  111 (210)
T ss_dssp             CEEEESCCGGG--C-----CSCEEEEEEEEEC---S-----SSSSCEEEEECSEEEEEETTEEEGGGSCCCCCBCS-C-C
T ss_pred             CEEEEEeCccc--C-----CCCEEEEEEEEeC---C-----CCCcEEEEEecCccccccccccccccccceeecCC-C-C
Confidence            35677666521  1     1456777777653   2     157999999998        688888999999973 2 2


Q ss_pred             ccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee
Q psy12782         80 FLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER  159 (203)
Q Consensus        80 ~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~  159 (203)
                      ..++.++++||+......    ..+ .....+++..               ...++|+.     ...|.|||||||++.+
T Consensus       112 ~~g~~v~v~G~p~~~~~~----~~l-~~~~g~v~~~---------------~~~~i~~~-----~~~~~GdSGGPlv~~~  166 (210)
T 2as9_A          112 KVDDKIKVIGYPLPAQNS----FKQ-FESTGTIKRI---------------KDNILNFD-----AYIEPGNSGSPVLNSN  166 (210)
T ss_dssp             CTTCEEEEEECSSTTTTT----SCC-EEEEEEEEEE---------------ETTEEEEE-----CCCCTTCTTCEEECTT
T ss_pred             CCCCEEEEEeCCCCCCCC----cce-EEeeeEEccc---------------cCCeEEEc-----CccCCCCccCcEECCC
Confidence            368999999998632221    112 3333443321               23567864     4689999999999842


Q ss_pred             CCcEEEEEEEEecCC
Q psy12782        160 TGRWFLIGIVSAGYS  174 (203)
Q Consensus       160 ~~~~~lvGv~s~~~~  174 (203)
                       |+  |+||+||+..
T Consensus       167 -g~--lvGI~s~g~~  178 (210)
T 2as9_A          167 -NE--VIGVVYGGIG  178 (210)
T ss_dssp             -SC--EEEEECCSCC
T ss_pred             -Ce--EEEEEecccc
Confidence             32  9999999875

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=99.52  E-value=5.3e-14  Score=108.45  Aligned_cols=128  Identities=19%  Similarity=0.177  Sum_probs=84.8

Q ss_pred             ceeEEEeeeeeecc-cCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCc---CCCCCccceecCCCCCCccCc
Q psy12782          8 RQVQVTLGDYVINS-AVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPV---QYMPHIAPICLPEKGEDFLGQ   83 (203)
Q Consensus         8 ~~~~V~~G~~~~~~-~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~---~~~~~i~picl~~~~~~~~~~   83 (203)
                      ..+.|+.|...... .....+.+.+.+..+..|| |+     ..+|||||+|+.++   .++..++|+||+.......++
T Consensus        75 ~~v~v~~G~~~~~~~~~~~~~~~~~~~~~i~~hp-~~-----~~~DiALLkl~~~~~~~~~~~~v~~i~L~~~~~~~~g~  148 (246)
T 1qtf_A           75 SNIIFTPAQNRDAEKNEFPTPYGKFEAEEIKESP-YG-----QGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGD  148 (246)
T ss_dssp             GGEEEEETCCCCTTTTCCCCTTCCEEEEEEESCT-TC-----TTSCCEEEEECCCTTSCCHHHHSCCCCCCSSCCCCTTC
T ss_pred             eEEEEecCccccccccccccCCceEEEEEEEeCC-CC-----CCCCEEEEEEeCCccccccccceeeeecCCccccCCCC
Confidence            45788888765432 1111123578899999999 64     36799999999998   566679999998654334689


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcE
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW  163 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~  163 (203)
                      .+.++||+.....    . .+....+.+.+         .      .          ......|.|||||||++. ++  
T Consensus       149 ~v~v~G~p~g~~~----~-~~~~~~~~~~~---------~------~----------~~~~~~~~GdSGGPlv~~-~g--  195 (246)
T 1qtf_A          149 KYSLLGYPYNYSA----Y-SLYQSQIEMFN---------D------S----------QYFGYTEVGNSGSGIFNL-KG--  195 (246)
T ss_dssp             EEEEEECCTTTST----T-CCEEEEEEESS---------S------S----------BEESCCCGGGTTCEEECT-TC--
T ss_pred             EEEEEECCCCCCC----c-eeEeeeeeecC---------c------E----------EEeCCCCCCCchhheECC-CC--
Confidence            9999999643221    1 12222333332         0      0          001357999999999973 23  


Q ss_pred             EEEEEEEecCC
Q psy12782        164 FLIGIVSAGYS  174 (203)
Q Consensus       164 ~lvGv~s~~~~  174 (203)
                      .|+||+|++..
T Consensus       196 ~lvGI~s~g~~  206 (246)
T 1qtf_A          196 ELIGIHSGKGG  206 (246)
T ss_dssp             CEEEEEEEEET
T ss_pred             EEEEEEecccc
Confidence            39999999854

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.18  E-value=9.1e-11  Score=94.71  Aligned_cols=140  Identities=24%  Similarity=0.290  Sum_probs=87.3

Q ss_pred             eEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEE
Q psy12782         29 YTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVD  108 (203)
Q Consensus        29 ~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~  108 (203)
                      +.+....+..++         .+|||||||+.|-   ..+.|++|+.......++.+.+.||+.....      .+....
T Consensus        87 ~~~~a~~v~~d~---------~~DlAlLkl~~~~---~~~~~i~l~~s~~~~~G~~v~~iG~p~g~~~------~~~~g~  148 (348)
T 3qo6_A           87 TTFDAKVVGFDQ---------DKDVAVLRIDAPK---NKLRPIPVGVSADLLVGQKVFAIGNPFGLDH------TLTTGV  148 (348)
T ss_dssp             CEEEEEEEEEEG---------GGTEEEEECCCCG---GGCCCCCBCCSTTCCTTCEEEEEECGGGCTT------EEEEEE
T ss_pred             CEEEEEEEEEcC---------cCCEEEEEEcCCC---CCceeEEecCcccCCCCCEEEEEECCCCCCC------cEeEEE
Confidence            344555554454         3499999999872   3578899987654447999999999854322      122222


Q ss_pred             EeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCC-CCCCCCCeEEEeC
Q psy12782        109 VPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRV  187 (203)
Q Consensus       109 ~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~-c~~~~~~~v~t~v  187 (203)
                      +..+.+..|......      .....+++     ....|.|+|||||++. +|+  |+||.++... +........+..+
T Consensus       149 vs~~~~~~~~~~~~~------~~~~~i~~-----da~i~~G~SGGPLvn~-~G~--vvGI~s~~~~~~~~~~g~gfaiP~  214 (348)
T 3qo6_A          149 ISGLRREISSAATGR------PIQDVIQT-----DAAINPGNSGGPLLDS-SGT--LIGINTAIYSPSGASSGVGFSIPV  214 (348)
T ss_dssp             EEEEEEEECCSSSSS------CEEEEEEE-----CSCCCTTCTTCEEECT-TSC--EEEEEEEEECSSSSCSSCEEEEEH
T ss_pred             EEeeccccccccCCC------cccCEEEE-----eCCcCCCCcHHHhhCC-CCe--EEEEEEeeecCCCCcccEEEEEEe
Confidence            222222222111000      11223443     2478999999999974 233  9999999753 4333456788899


Q ss_pred             CCCHHHHHHhhcc
Q psy12782        188 AYTVDWISYIMNT  200 (203)
Q Consensus       188 ~~~~~WI~~~i~~  200 (203)
                      ....+||++.++.
T Consensus       215 ~~~~~~~~~l~~~  227 (348)
T 3qo6_A          215 DTVGGIVDQLVRF  227 (348)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHhC
Confidence            9999999998764

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=99.15  E-value=9.7e-11  Score=86.46  Aligned_cols=117  Identities=18%  Similarity=0.141  Sum_probs=75.6

Q ss_pred             CCCeEEEEECCCcCCCCCccc-----eecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhC
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAP-----ICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN  124 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~p-----icl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~  124 (203)
                      .+|||||||+.++.+.+.+..     +.+........++.+...||.....     ...+...+..+.-        .. 
T Consensus        60 ~~DiAlikl~~~~~~~~~v~~~~g~~~~i~~~~~~~~G~~v~~~G~~~g~t-----~G~v~~~~~~v~~--------~~-  125 (187)
T 1hpg_A           60 TNDYGIVRYTDGSSPAGTVDLYNGSTQDISSAANAVVGQAIKKSGSTTKVT-----SGTVTAVNVTVNY--------GD-  125 (187)
T ss_dssp             BSCEEEEEECSSCCCCSEEECSSSCEEECCEECCCCTTCEEEEEETTTEEE-----EEEEEEEEEEEEE--------TT-
T ss_pred             CCCEEEEEeCCCCCcCceEEecCCceeeeccccCCCCCCEEEEEEcCCCEe-----EEEEEEeEEEEEe--------CC-
Confidence            469999999987655433221     3333333334688889999874211     2234444433310        00 


Q ss_pred             CCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCC-CCCCCCCeEEEeCCCCHHHH
Q psy12782        125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWI  194 (203)
Q Consensus       125 ~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~-c~~~~~~~v~t~v~~~~~WI  194 (203)
                          ....+++|+.     ...|.||+||||++.+    .++||.+++.. |.. ..|.+|++|..+++.+
T Consensus       126 ----~~~~~~i~t~-----~~~~~GdSGgpl~~~~----~~vGi~s~~~~~~~~-~~~~~~~~i~~~~~~l  182 (187)
T 1hpg_A          126 ----GPVYNMVRTT-----ACSAGGDSGGAHFAGS----VALGIHSGSSGCSGT-AGSAIHQPVTEALSAY  182 (187)
T ss_dssp             ----EEEEEEEEEC-----CCCCTTCTTCEEEETT----EEEEEEEEESCCBTT-BCCCEEEEHHHHHHHH
T ss_pred             ----CeEeeeEEec-----cccCCCCCCCeEEECC----EEEEEEEeeCCCCCC-CCceEEEEHHHHHHHc
Confidence                1235688874     4678999999999864    49999999875 544 6689999998877654

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=99.13  E-value=8.3e-11  Score=90.10  Aligned_cols=127  Identities=17%  Similarity=0.216  Sum_probs=78.1

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCccc
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV  129 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~  129 (203)
                      .+|||||||+.+.   ..+.+++|+.......++.+.+.||+.....         ....-+++...|.  ...... ..
T Consensus       102 ~~DlAllkl~~~~---~~~~~~~l~~s~~~~~G~~v~~iG~p~g~~~---------~vt~Givs~~~r~--~~~~~~-~~  166 (239)
T 1l1j_A          102 ELDIAVIKIKASD---KKFPYLEFGDSDKVKIGEWAIAIGNPLGFQH---------TVTVGVVSATNRR--IPKPDG-SG  166 (239)
T ss_dssp             TTTEEEEEBCCSS---SCCCCCEECCGGGCCTTCEEEEEECTTSSSC---------EEEEEEEEEEEEE--EECTTS-SC
T ss_pred             CCCEEEEEEcCCC---CCCceEEecCccCCccccEEEEEECCCCCCC---------cEEEEEEeccccc--cccCCC-cc
Confidence            5799999999875   4678999986543346899999999753211         1112222222221  000000 00


Q ss_pred             ccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       130 ~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      ....++|+.     ...|.|+|||||+... |  .|+||.+++.............-+...++|+++.++
T Consensus       167 ~~~~~i~td-----a~i~~G~SGGPLv~~~-G--~vvGI~s~~~~~~~~~g~~faIP~~~~~~~~~~l~~  228 (239)
T 1l1j_A          167 YYVGLIQTD-----AAINPGNSGGPLLNIH-G--EVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTILT  228 (239)
T ss_dssp             EEEEEEEES-----SCCCTTTTTSEEECSS-S--EEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGCC
T ss_pred             ccCCEEEEC-----CCCCCCCccHHhccCC-C--eEEEEEeeeecCCCcCceEEEEEHHHHHHHHHHHHH
Confidence            134678873     4789999999999642 3  399999998641111234566777777777777664

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=99.10  E-value=4.4e-10  Score=85.66  Aligned_cols=134  Identities=17%  Similarity=0.168  Sum_probs=77.3

Q ss_pred             eEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEE
Q psy12782         29 YTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVD  108 (203)
Q Consensus        29 ~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~  108 (203)
                      +.+.+..+..+|         .+|||||+|+.+.    .+.+++|+.......++.+.+.||+....      ..+....
T Consensus        97 ~~~~a~v~~~d~---------~~DlAlL~l~~~~----~~~~~~l~~~~~~~~G~~v~~~G~p~g~~------~~~~~g~  157 (231)
T 3tjo_A           97 ATYEAKIKDVDE---------KADIALIKIDHQG----KLPVLLLGRSSELRPGEFVVAIGSPFSLQ------NTVTTGI  157 (231)
T ss_dssp             CEEEEEEEEEET---------TTTEEEEECCCSS----CCCCCCBCCGGGCCTTCEEEEEEEEETTE------EEEEEEE
T ss_pred             CEEEEEEEEecC---------CCCEEEEEecCCC----CCCceecCCcCCCCCCCEEEEEECCCCCC------CceeeEE
Confidence            345555555555         3599999999763    45677886654434689999999974311      1112222


Q ss_pred             EeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCC
Q psy12782        109 VPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA  188 (203)
Q Consensus       109 ~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~  188 (203)
                      +.-..+..+......      ....++|+.     ...|.|+|||||+... |+  |+||.+++..++    ......+.
T Consensus       158 vs~~~~~~~~~~~~~------~~~~~i~~d-----a~i~~G~SGGPLv~~~-G~--vVGI~s~~~~~g----~~~aip~~  219 (231)
T 3tjo_A          158 VSTTQRGGKELGLRN------SDMDYIQTD-----AIINYGNAGGPLVNLD-GE--VIGINTLKVTAG----ISFAIPSD  219 (231)
T ss_dssp             EEECC-------------------CCEEES-----SCCCTTTTTSEEECTT-SC--EEEEEEEEEETT----EEEEEEHH
T ss_pred             EeeccccccccccCC------CcccEEEEc-----CCcCCCCchhHeecCC-Ce--EEEEEeEEecCC----eEEEEEHH
Confidence            222222211111110      112345542     4678999999999532 33  999999975432    34567777


Q ss_pred             CCHHHHHHhhc
Q psy12782        189 YTVDWISYIMN  199 (203)
Q Consensus       189 ~~~~WI~~~i~  199 (203)
                      ..++|+++..+
T Consensus       220 ~i~~~l~~~~~  230 (231)
T 3tjo_A          220 KIKKFLTESHD  230 (231)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhh
Confidence            77788877654

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=99.05  E-value=6.7e-10  Score=84.89  Aligned_cols=144  Identities=19%  Similarity=0.170  Sum_probs=78.3

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeE
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW   86 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~   86 (203)
                      ...+.|++|.            ..+....+..|+         .+|||||||+     +..+.|++|+... ...++.+.
T Consensus        80 ~~~~~V~~~~------------~~~~~~~v~~~~---------~~DiAll~l~-----~~~~~~~~l~~~~-~~~G~~v~  132 (237)
T 3k6y_A           80 SNNVTVYAGD------------KPFEATVVSYDP---------SVDVAILAVP-----HLPPPPLVFAAEP-AKTGADVV  132 (237)
T ss_dssp             CSEEEEEETT------------EEEECEEEEEET---------TTTEEEEECT-----TCCSCCCCBCSSC-CCTTCEEE
T ss_pred             CceEEEEECC------------cEEEEEEEEEcC---------CCCEEEEEeC-----CCCCCceecCCCC-CCCCCEEE
Confidence            4456676665            123444455555         3599999998     3468899998332 34689999


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      +.||+.....      .+....+.......|...+.        .....|..........|.|||||||++.. |+  |+
T Consensus       133 v~G~p~g~~~------~~~~g~v~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~GdSGGPLv~~~-G~--vv  195 (237)
T 3k6y_A          133 VLGYPGGGNF------TATPARIREAIRLSGPDIYG--------DPEPVTRDVYTIRADVEQGDSGGPLIDLN-GQ--VL  195 (237)
T ss_dssp             EEECGGGCSC------EEEEEEEEEEEEEEECCTTC--------CSSCEEEEEEEEESCCCTTCTTCEEECTT-SC--EE
T ss_pred             EEECCCCCCC------ccceeEEEeeEeeccccccc--------CCCcccccEEEecCccCCCccHHHEECCC-CE--EE
Confidence            9999753221      12222222222222322221        11112222111225689999999999742 33  99


Q ss_pred             EEEEecCCCCCCCCCeEEEeCCCCHHHHHH
Q psy12782        167 GIVSAGYSCAQQGQPGIYHRVAYTVDWISY  196 (203)
Q Consensus       167 Gv~s~~~~c~~~~~~~v~t~v~~~~~WI~~  196 (203)
                      ||++++..... + .....-+...++||++
T Consensus       196 GI~s~~~~~~~-~-~~~aip~~~v~~~l~~  223 (237)
T 3k6y_A          196 GVVFGAAIDDA-E-TGFVLTAGEVAGQLAK  223 (237)
T ss_dssp             EEEEEECSSST-T-EEEEEEHHHHHGGGGG
T ss_pred             EEEEeeccCCC-c-EEEEEEHHHHHHHHHH
Confidence            99999754211 1 2334444444444443

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=99.03  E-value=3.3e-11  Score=89.04  Aligned_cols=117  Identities=17%  Similarity=0.279  Sum_probs=68.9

Q ss_pred             CCCeEEEEECCCcCCCCCcc-----ceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhC
Q psy12782         50 RYDVAVLRLDRPVQYMPHIA-----PICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN  124 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~-----picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~  124 (203)
                      .+|||||||+.+..+++.+.     +++|+.......++.+.  .||+..        .+..-.+..+....+..  ...
T Consensus        54 ~~DiAlikl~~~~~~~~~v~~~~g~~v~l~~s~~~~vG~~v~--~~G~~t--------G~t~G~Vs~~~~~v~~~--~~~  121 (189)
T 2ea3_A           54 GNDYAFVRTGAGVNLLAQVNNYSGGRVQVAGHTAAPVGSAVC--RSGSTT--------GWHCGTITALNSSVTYP--EGT  121 (189)
T ss_dssp             BSCEEEEEECTTCEEEEEEECSSSCEEECCBCCCCCTTCEEE--EEETTT--------EEEEEEEEEEEEEEEET--TEE
T ss_pred             CCCEEEEEECCCCccccceEecCCceeecCCCcCCCCCCEEE--EEEeCC--------ccEEEEEEecceEEEeC--Ccc
Confidence            46999999998876665554     66776544333566544  444321        12222222222211100  000


Q ss_pred             CCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCC-CCCCCCCeEEEeCCCCHHHH
Q psy12782        125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWI  194 (203)
Q Consensus       125 ~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~-c~~~~~~~v~t~v~~~~~WI  194 (203)
                       + ..+...++|+.         .||+||||++++    .++||.|++.. |.. ..+.+|++|..+++|.
T Consensus       122 -~-~~~~~~~~~~~---------~GDSGgpl~~~~----~~vGi~s~~~~~c~~-~~~~~~~pi~~~l~~~  176 (189)
T 2ea3_A          122 -V-RGLIRTTVCAE---------PGDSGGSLLAGN----QAQGVTSGGSGNCRT-GGTTFFQPVNPILQAY  176 (189)
T ss_dssp             -E-EEEEEESCCCC---------TTCTTCEEEETT----EEEEEEEEEEEETTT-EEEEEEEEHHHHHHHH
T ss_pred             -C-cceEEeeeecc---------CCCccCeEEECC----EEEEEEeecCCCCCC-CCcEEEEEHHHHHHHC
Confidence             0 00222345542         789999999743    39999999876 543 5689999999998886

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=99.03  E-value=3.1e-09  Score=81.25  Aligned_cols=136  Identities=15%  Similarity=0.195  Sum_probs=82.9

Q ss_pred             eEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEE
Q psy12782         29 YTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVD  108 (203)
Q Consensus        29 ~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~  108 (203)
                      +.+.+..+..||.         +|||||+|+.+.    .+.+++|+.......++.+.+.||+....      ..+....
T Consensus        87 ~~~~a~vv~~d~~---------~DlAll~l~~~~----~~~~~~l~~~~~~~~G~~v~~~G~p~~~~------~~~~~g~  147 (237)
T 3lgi_A           87 RVFEALLVGSDSL---------TDLAVLKINATG----GLPTIPINARRVPHIGDVVLAIGNPYNLG------QTITQGI  147 (237)
T ss_dssp             CEEEEEEEEEETT---------TTEEEEECCCSS----CCCCCCCCTTCCCCTTBEEEEEECGGGSC------SEEEEEE
T ss_pred             CEEEEEEEEEcCC---------CCEEEEEecCCC----CCceEeccCcccCCCCCEEEEEECCCCCC------CcEEEEE
Confidence            3455555655663         499999999764    35677887654434689999999975321      1122222


Q ss_pred             EeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCC----CCCCeEE
Q psy12782        109 VPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQ----QGQPGIY  184 (203)
Q Consensus       109 ~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~----~~~~~v~  184 (203)
                      +....+..+..         ......+++.     ...|.|+|||||+.. +|+  |+||.++......    .......
T Consensus       148 vs~~~~~~~~~---------~~~~~~i~~d-----~~i~~G~SGGPlv~~-~G~--vvGI~s~~~~~~~~~~~~~g~~~a  210 (237)
T 3lgi_A          148 ISATGRIGLNP---------TGRQNFLQTD-----ASINHGNSGGALVNS-LGE--LMGINTLSFDKSNDGETPEGIGFA  210 (237)
T ss_dssp             EEEECCSSCCT---------TSCSCCEEEC-----SCCCTTCTTCEEECT-TCC--EEEEECCCCCCCTTSCCCCSCEEE
T ss_pred             EEecccccccC---------CCcCCEEEEc-----CccCCCCchHHeeCC-CCe--EEEEEeeeeccCCCCcCcCceEEE
Confidence            22222221111         0223445543     457999999999974 343  9999999754211    1224566


Q ss_pred             EeCCCCHHHHHHhhcc
Q psy12782        185 HRVAYTVDWISYIMNT  200 (203)
Q Consensus       185 t~v~~~~~WI~~~i~~  200 (203)
                      .-+....+++++.++.
T Consensus       211 ip~~~i~~~~~~l~~~  226 (237)
T 3lgi_A          211 IPFQLATKIMDKLIRD  226 (237)
T ss_dssp             EEHHHHHHHHHHHHHH
T ss_pred             EEHHHHHHHHHHHHHc
Confidence            7777788888887764

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.00  E-value=3.1e-09  Score=84.88  Aligned_cols=129  Identities=19%  Similarity=0.201  Sum_probs=76.1

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCccc
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV  129 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~  129 (203)
                      .+|||||+|+.+    ..+.|++|+.......++.+.+.||....... .....+....-.+.....    ....    .
T Consensus        86 ~~DlAllkl~~~----~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~~-~~~G~vs~~~~~~~~~~~----~g~~----~  152 (324)
T 1y8t_A           86 TSDIAVVRVQGV----SGLTPISLGSSSDLRVGQPVLAIGSPLGLEGT-VTTGIVSALNRPVSTTGE----AGNQ----N  152 (324)
T ss_dssp             TTTEEEEEECSC----CSCCCCEECCSTTCCTTCEEEEEECGGGCTTE-EEEEEEEEEEEEECC---------------C
T ss_pred             CCCEEEEEECCC----CCCceEEecCcccCCCCCEEEEEEcCCCCCCc-EeeeEEeecccccccccc----cCcc----c
Confidence            579999999987    45779999875433468999999995321110 001111111111100000    0000    1


Q ss_pred             ccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCC--------CCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA--------QQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       130 ~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~--------~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      ....++|+.     ...|.|+|||||++.. |  .|+||.+++....        .......+.-+...+.|+.+.++
T Consensus       153 ~~~~~i~~d-----~~~~~G~SGGPlv~~~-G--~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~  222 (324)
T 1y8t_A          153 TVLDAIQTD-----AAINPGNSGGALVNMN-A--QLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELIS  222 (324)
T ss_dssp             CCEEEEEEC-----SCCCTTCTTEEEECTT-S--EEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHH
T ss_pred             ccCCEEEEc-----CCCCCCCccCcEECCC-C--eEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHHHH
Confidence            345688874     4689999999999743 3  3999999974321        11224566777777788877765

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.98  E-value=7.8e-09  Score=82.84  Aligned_cols=134  Identities=17%  Similarity=0.156  Sum_probs=75.5

Q ss_pred             ceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEE
Q psy12782         28 AYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAV  107 (203)
Q Consensus        28 ~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~  107 (203)
                      .+.+.+..+..||.         +|||||+|+.+    ..+.+++|+.......++.+.+.||+....      ..+...
T Consensus        79 g~~~~a~~~~~d~~---------~DlAlL~l~~~----~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~------~~~~~g  139 (332)
T 3num_A           79 GATYEAKIKDVDEK---------ADIALIKIDHQ----GKLPVLLLGRSSELRPGEFVVAIGSPFSLQ------NTVTTG  139 (332)
T ss_dssp             SCEEEEEEEEEETT---------TTEEEEEECCS----SCCCCCCBCCTTSCCTTCEEEEECC-----------CCEEEE
T ss_pred             CCEEEEEEEEecCC---------CCeEEEEEcCC----CCCceeeecCcccCCCCCEEEEEECCCCCC------cceeee
Confidence            34566667777773         49999999976    345677887655444689999999985322      112222


Q ss_pred             EEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeC
Q psy12782        108 DVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV  187 (203)
Q Consensus       108 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v  187 (203)
                      .+.-..+..|...+..      .....+|+.     ...|.|+|||||+... |+  |+||.+++...+    .....-+
T Consensus       140 ~vs~~~~~~~~~~~~~------~~~~~i~~d-----~~i~~G~SGGPlv~~~-G~--vvGI~s~~~~~g----~~~aip~  201 (332)
T 3num_A          140 IVSTTQRGGKELGLRN------SDMDYIQTD-----AIINYGNAGGPLVNLD-GE--VIGINTLKVTAG----ISFAIPS  201 (332)
T ss_dssp             EEEEC--------------------CCEEES-----SCCCTTTTTSEEEETT-SC--EEEEEEEEEETT----EEEEEEH
T ss_pred             EEEeecccccccCcCC------CcCCEEEEE-----CCcCCCCcHHHhhCCC-Cc--EEEEEeeEeccc----ceEEECH
Confidence            2222222222221111      112345542     3578899999999743 33  999999975432    2455666


Q ss_pred             CCCHHHHHHhh
Q psy12782        188 AYTVDWISYIM  198 (203)
Q Consensus       188 ~~~~~WI~~~i  198 (203)
                      .....|+.+.+
T Consensus       202 ~~i~~~l~~~~  212 (332)
T 3num_A          202 DKIKKFLTESH  212 (332)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHh
Confidence            66667776654

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.85  E-value=2.9e-08  Score=79.08  Aligned_cols=123  Identities=17%  Similarity=0.195  Sum_probs=76.5

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCccc
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV  129 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~  129 (203)
                      .+|||||+++.+    ..+.+++|+.......++.+.+.||.....      ..+   ..-+++..... .+..     .
T Consensus        88 ~~DlAllk~~~~----~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~------~~~---~~g~vs~~~~~-~~~~-----~  148 (318)
T 1te0_A           88 LTDLAVLIIKAT----GGLPTIPINARRVPHIGDVVLAIGNPYNLG------QTI---TQGIISATGRI-GLNP-----T  148 (318)
T ss_dssp             TTTEEEEECCCS----SCCCCCCCCTTCCCCTTCEEEEECCCSSSS------CCE---EEEEEEECCCC-CCCT-----T
T ss_pred             CceEEEEEEeCC----CCCceEEeeCccCCCCCCEEEEEEcCCCCC------CcE---EeeEEeccccc-ccCC-----C
Confidence            569999999976    356788887654334699999999753211      111   12222211110 0100     1


Q ss_pred             ccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCC----CCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA----QQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       130 ~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~----~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      ....++|+.     ...|.|+|||||+.. +|+  |+||.+++....    .......+.-+.....|+++.++
T Consensus       149 ~~~~~i~~d-----~~~~~G~SGGPl~~~-~G~--vvGI~s~~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~  214 (318)
T 1te0_A          149 GRQNFLQTD-----ASINHGNSGGALVNS-LGE--LMGINTLSFDKSNDGETPEGIGFAIPFQLATKIMDKLIR  214 (318)
T ss_dssp             CSCCSEEES-----SCCCTTTTTSEEECT-TCC--EEEEEECCSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             CcCCEEEEC-----CCCCCCCCcCceECC-CCe--EEEEEeeeeccCCccccccceEEeccHHHHHHHHHHHHH
Confidence            245678873     468999999999974 333  999999975421    12234567777777888887765

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=98.79  E-value=4.3e-08  Score=75.21  Aligned_cols=136  Identities=18%  Similarity=0.228  Sum_probs=79.5

Q ss_pred             eEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEE
Q psy12782         29 YTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVD  108 (203)
Q Consensus        29 ~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~  108 (203)
                      +.+..+-+..+|         .+|||||||+.+.    .+.++.|........++.+.+.||.....      .   ...
T Consensus        98 ~~~~a~vv~~d~---------~~DlAlLkv~~~~----~~~~~~l~~s~~~~~G~~v~aiG~P~g~~------~---~vt  155 (245)
T 3sti_A           98 REFDAKLIGSDD---------QSDIALLQIQNPS----KLTQIAIADSDKLRVGDFAVAVGNPFGLG------Q---TAT  155 (245)
T ss_dssp             CEEEEEEEEEET---------TTTEEEEEESSCC----SCCCCCBCCGGGCCTTBEEEEEECGGGSC------C---EEE
T ss_pred             CEEEEEEEEecC---------CCCEEEEEeccCC----CCceeeecCcCCCCCCCEEEEEECCCCCC------C---cEE
Confidence            345555555555         3499999998653    35577777654334689999999753211      1   111


Q ss_pred             EeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCC-CCCCCeEEEeC
Q psy12782        109 VPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA-QQGQPGIYHRV  187 (203)
Q Consensus       109 ~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~-~~~~~~v~t~v  187 (203)
                      .-+++...+.. ...     .....++|+.     ...|.|+|||||+... |+  |+||.++..... .........-+
T Consensus       156 ~G~vs~~~~~~-~~~-----~~~~~~i~td-----a~i~~G~SGGPLvn~~-G~--vVGI~s~~~~~~~~~~g~~faIP~  221 (245)
T 3sti_A          156 SGIVSALGRSG-LNL-----EGLENFIQTD-----ASINRGNSGGALLNLN-GE--LIGINTAILAPGGGSVGIGFAIPS  221 (245)
T ss_dssp             EEEEEECSSCS-SCC-----TTCSSCEEES-----SCCCTTTTTSEEECTT-SC--EEEEEECCC------CCCEEEEEH
T ss_pred             eeEEeeecccc-cCC-----CCccCEEEEc-----CCcCCCcchhHeecCC-Ce--EEEEEEeEECCCCCcceEEEEEeH
Confidence            22222222211 010     1234567763     3678999999999532 43  999999975421 11224566677


Q ss_pred             CCCHHHHHHhhcc
Q psy12782        188 AYTVDWISYIMNT  200 (203)
Q Consensus       188 ~~~~~WI~~~i~~  200 (203)
                      ...++++++.++.
T Consensus       222 ~~~~~~~~~l~~~  234 (245)
T 3sti_A          222 NMARTLAQQLIDF  234 (245)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            7777888877753

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.79  E-value=3.5e-08  Score=78.80  Aligned_cols=99  Identities=20%  Similarity=0.218  Sum_probs=65.3

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhH-hhhCCCcc
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERW-HKSNGINV  128 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~-~~~~~~~~  128 (203)
                      .+|||||||+.+.    .+.|++|+.......++.+.+.||+....         +....-+++...|... +...    
T Consensus        93 ~~DlAllkl~~~~----~~~~~~l~~~~~~~~G~~v~~~G~p~~~~---------~~v~~G~vs~~~~~~~~~g~~----  155 (325)
T 1lcy_A           93 VADIATLRIQTKE----PLPTLPLGRSADVRQGEFVVAMGSPFALQ---------NTITSGIVSSAQRPARDLGLP----  155 (325)
T ss_dssp             TTTEEEEECCCSS----CCCCCCBCCGGGCCTTCEEEECCCTTSSS---------SCCEEEEBCSCSCC-----------
T ss_pred             CCCEEEEEEcCCC----CCceEEecccccCCCCCEEEEEECCCCCC---------CcEEeEEEecccccccccCCC----
Confidence            5799999999763    46688887653334689999999985321         1233455555556421 1100    


Q ss_pred             cccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecC
Q psy12782        129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGY  173 (203)
Q Consensus       129 ~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~  173 (203)
                      .....++|+.     ...|.|+|||||+... |+  |+||.+++.
T Consensus       156 ~~~~~~i~~d-----~~~~~G~SGGPl~~~~-G~--vVGI~s~~~  192 (325)
T 1lcy_A          156 QTNVEYIQTD-----AAIDFGNAGGPLVNLD-GE--VIGVNTMKV  192 (325)
T ss_dssp             --CCCCEEES-----SCCSTTTTTSEEEETT-SC--EEEEEEEEE
T ss_pred             CCCCCEEEEc-----CCCCCCCccccEECCC-CE--EEEEEeEee
Confidence            1346789984     4689999999999743 33  999999875

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=98.70  E-value=2.3e-09  Score=78.89  Aligned_cols=114  Identities=18%  Similarity=0.253  Sum_probs=63.0

Q ss_pred             CCCeEEEEECCCcCCCCCcc-----ceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeee-ChhhHhhHhhh
Q psy12782         50 RYDVAVLRLDRPVQYMPHIA-----PICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPII-DNRQCERWHKS  123 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~-----picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~-~~~~C~~~~~~  123 (203)
                      .+|+|||||+.+...++.+.     ++.+........++.+...|.-....     ...+...+..+. +..    .+. 
T Consensus        57 ~~D~Alikl~~~~~~~~~v~~~~g~~~~i~~~~~~~vG~~vc~~G~~tG~t-----~G~vs~~~~tv~~~~~----~~~-  126 (186)
T 2pfe_A           57 GRDMGWVRITSADTVTPLVNRYNGGTVTVTGSQEAATGSSVCRSGATTGWR-----CGTIQSKNQTVRYAEG----TVT-  126 (186)
T ss_dssp             BSCEEEEEECTTSEEEEEEECSSSCEEECCBCCCCCTTCEEEEEETTTEEE-----EEEEEEEEEEEEETTE----EEE-
T ss_pred             CCCEEEEEeCCCcccccceeccCCceEecCCCCCCCCCCeEEEEEeCCceE-----EEEEEEEeeeEEeCCc----eEe-
Confidence            46999999998765444443     44454433333566544444321100     111222222221 110    010 


Q ss_pred             CCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCC-CCCCCCCeEEEeCCCCHH
Q psy12782        124 NGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVD  192 (203)
Q Consensus       124 ~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~-c~~~~~~~v~t~v~~~~~  192 (203)
                           .+...++|+.         .||+||||++++    .++||+|++.. |.. ..+.+|++|...++
T Consensus       127 -----~~~~~~~c~~---------~GDSGgpl~~~~----~~vGi~s~g~~~c~~-~~~~~~~pi~~~l~  177 (186)
T 2pfe_A          127 -----GLTRTTACAE---------GGDSGGPWLTGS----QAQGVTSGGTGDCRS-GGITFFQPINPLLS  177 (186)
T ss_dssp             -----EEEEESCCCC---------TTCTTCEEEETT----EEEEEEEEEEEETTT-EEEEEEEEHHHHHH
T ss_pred             -----ceEeccEEec---------CCCccCeEEECC----EEEEEEeecCCCCCC-CCcEEEEEHHHHHH
Confidence                 1233456653         689999999744    39999999865 543 45789999776543

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=98.48  E-value=1.9e-08  Score=74.13  Aligned_cols=39  Identities=31%  Similarity=0.581  Sum_probs=29.9

Q ss_pred             cCCCCCeeEEeeCCcEEEEEEEEecCC-CCCCCCCeEEEeCCCCH
Q psy12782        148 QGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTV  191 (203)
Q Consensus       148 ~~d~G~pl~~~~~~~~~lvGv~s~~~~-c~~~~~~~v~t~v~~~~  191 (203)
                      .||+||||++++    .++||++++.. |.. ..+..|++|...+
T Consensus       140 ~GDSGgpl~~~~----~~vGi~s~~~~~~~~-~~~~~~~pi~~~l  179 (188)
T 2oua_A          140 PGDSGGSFISGT----QAQGVTSGGSGNCRT-GGTTFYQEVNPML  179 (188)
T ss_dssp             TTCTTCEEEETT----EEEEEEEEEEEETTT-EEEEEEEESHHHH
T ss_pred             CCCccceEEECC----EEEEEEeccCCCCCC-CCceEEEEHHHHH
Confidence            789999999743    39999999864 644 3468899886654

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.48  E-value=8.5e-07  Score=71.34  Aligned_cols=136  Identities=18%  Similarity=0.223  Sum_probs=77.3

Q ss_pred             ceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEE
Q psy12782         28 AYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAV  107 (203)
Q Consensus        28 ~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~  107 (203)
                      .+.+.++-+..||.         +||||||++.+-    .+.++.|........++.+.+.||......         ..
T Consensus        97 g~~~~a~vv~~d~~---------~DlAlLkv~~~~----~~~~~~l~~s~~~~~G~~V~aiG~p~g~~~---------~v  154 (345)
T 3stj_A           97 GREFDAKLIGSDDQ---------SDIALLQIQNPS----KLTQIAIADSDKLRVGDFAVAVGNPFGLGQ---------TA  154 (345)
T ss_dssp             SCEEEEEEEEEETT---------TTEEEEEESSCC----SCCCCCBCCGGGCCTTBEEEEEECGGGCSC---------EE
T ss_pred             CcEEEEEEEEEcCC---------CCEEEEEEcccC----CCceEeecCcccCCCCCEEEEEECCCCCCC---------cE
Confidence            44567777777773         499999997653    455777765543346899999998532211         11


Q ss_pred             EEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCC-CCCCCCCeEEEe
Q psy12782        108 DVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHR  186 (203)
Q Consensus       108 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~-c~~~~~~~v~t~  186 (203)
                      ..-+++...+.. ...     ......+++.     ...|.|+|||||+... |+  ++||.++... ...........-
T Consensus       155 t~G~Vs~~~~~~-~~~-----~~~~~~iq~d-----a~i~~GnSGGPLvn~~-G~--vVGI~s~~~~~~~~~~g~gfaIP  220 (345)
T 3stj_A          155 TSGIVSALGRSG-LNL-----EGLENFIQTD-----ASINRGNSGGALLNLN-GE--LIGINTAILAPGGGSVGIGFAIP  220 (345)
T ss_dssp             EEEEEEEEEECC-SSS-----SSSCCEEEEC-----SCCCTTCTTCEEECTT-SC--EEEEEEEEECTTSSCSSCEEEEE
T ss_pred             EeeEEeeecccc-cCC-----CCccCEEEEe-----cccCCCcCccceeCCC-CE--EEEEEeccccCCCCcceeEEEEe
Confidence            111222211110 000     1223455542     4679999999999643 43  9999998543 212122344455


Q ss_pred             CCCCHHHHHHhhc
Q psy12782        187 VAYTVDWISYIMN  199 (203)
Q Consensus       187 v~~~~~WI~~~i~  199 (203)
                      +.....++++.++
T Consensus       221 ~~~~~~~~~~l~~  233 (345)
T 3stj_A          221 SNMARTLAQQLID  233 (345)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh
Confidence            5555666666554

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.27  E-value=1.1e-05  Score=67.19  Aligned_cols=138  Identities=21%  Similarity=0.265  Sum_probs=74.8

Q ss_pred             ceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEee--cccccCCCCCCccCce
Q psy12782         28 AYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAG--WGALQAGSRLRPKTLQ  105 (203)
Q Consensus        28 ~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~G--wg~~~~~~~~~~~~l~  105 (203)
                      .+.+..+-+..||.         .||||||++.     ..+.++.|........++.+.+.|  ||......   ...+.
T Consensus       111 g~~~~a~vv~~d~~---------~DlAlLkv~~-----~~l~~~~l~~s~~~~~G~~V~aiG~P~G~~~~~~---~~~vt  173 (451)
T 3pv2_A          111 GRRLKARLIGGDSE---------TDLAVLKIDA-----KNLKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGN---SQSAT  173 (451)
T ss_dssp             SCEEECEEEEEETT---------TTEEEEECCC-----SSCCCCCBCCGGGCCTTCEEEEEECCCCC--------CCEEE
T ss_pred             CCEEEEEEEecCcC---------CcEEEEEEcC-----cCCceeEecCcccCCCCCEEEEEECCCCcccccc---CCcee
Confidence            44566777777773         3999999963     345567776544334689999999  56432111   11222


Q ss_pred             EEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCC-CCCCCCCeEE
Q psy12782        106 AVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIY  184 (203)
Q Consensus       106 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~-c~~~~~~~v~  184 (203)
                      .-.+.-+.+...    ..     .....++++.     ...|.|+|||||+... |+  |+||.++... ..........
T Consensus       174 ~Givs~~~r~~~----~~-----~~~~~~iqtd-----a~i~~GnSGGPl~n~~-G~--VIGI~t~~~~~~~~~~g~gfa  236 (451)
T 3pv2_A          174 FGIVSALKRSDL----NI-----EGVENFIQTD-----AAINPGNSGGALVNAK-GE--LIGINTAILSPYGGNVGIGFA  236 (451)
T ss_dssp             EEEEEEEC-------------------CCEEES-----SCCCGGGTTSEEEETT-CC--EEEEEECCC------CCCEEE
T ss_pred             EEEEeecccccc----CC-----CCcceEEEEe-----cccCCCCCcCcccCCC-Ce--EEEEEeEeecCCCCccceeee
Confidence            222222222211    10     0223456653     4678999999999643 33  9999998653 2121223555


Q ss_pred             EeCCCCHHHHHHhhc
Q psy12782        185 HRVAYTVDWISYIMN  199 (203)
Q Consensus       185 t~v~~~~~WI~~~i~  199 (203)
                      .-+.....++++.++
T Consensus       237 IP~~~~~~~~~~l~~  251 (451)
T 3pv2_A          237 IPINMVKDVAQQIIK  251 (451)
T ss_dssp             EEHHHHHHHHHHHHH
T ss_pred             ehhHHHHHHHHHHHh
Confidence            666666677776654

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.25  E-value=2.2e-05  Score=65.02  Aligned_cols=136  Identities=18%  Similarity=0.229  Sum_probs=77.1

Q ss_pred             ceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEE
Q psy12782         28 AYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAV  107 (203)
Q Consensus        28 ~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~  107 (203)
                      .+.+..+-+..||.         +||||||++.+-    .+.++.|........++.+.+.||.....      ...   
T Consensus        97 g~~~~a~vv~~d~~---------~DlAllkv~~~~----~l~~~~l~~s~~~~~G~~v~aiG~P~g~~------~~v---  154 (436)
T 4a8c_A           97 GREFDAKLIGSDDQ---------SDIALLQIQNPS----KLTQIAIADSDKLRVGDFAVAVGNPFGLG------QTA---  154 (436)
T ss_pred             CCEEEEEEEEEcCC---------CCEEEEEecCCC----CCceEeccCcccCCCCCEEEEEEcCCCCC------ccE---
Confidence            34566666666663         499999997653    45678887655444689999999853211      111   


Q ss_pred             EEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCC-CCCCCeEEEe
Q psy12782        108 DVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA-QQGQPGIYHR  186 (203)
Q Consensus       108 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~-~~~~~~v~t~  186 (203)
                      ..-+++...+... ..     ......+++.     ...|.|+|||||+... |+  ++||.++..... .........-
T Consensus       155 t~G~vs~~~r~~~-~~-----~~~~~~iq~d-----a~i~~GnSGGPl~n~~-G~--vvGI~~~~~~~~~~~~g~gfaIP  220 (436)
T 4a8c_A          155 TSGIVSALGRSGL-NL-----EGLENFIQTD-----ASINRGNAGGALLNLN-GE--LIGINTAILAPGGGSVGIGFAIP  220 (436)
T ss_pred             EEEEEeeeccccc-CC-----CCccCEEEEc-----CccCCCCCcCcccCCC-CE--EEEEEeeeccCCCCceeEEEEEe
Confidence            1122222212110 00     0123445442     4678999999999643 33  999998865321 1112244455


Q ss_pred             CCCCHHHHHHhhc
Q psy12782        187 VAYTVDWISYIMN  199 (203)
Q Consensus       187 v~~~~~WI~~~i~  199 (203)
                      +.....++++.++
T Consensus       221 ~~~~~~~~~~l~~  233 (436)
T 4a8c_A          221 SNMARTLAQQLID  233 (436)
T ss_pred             hHHHHHHHHHHHh
Confidence            5555666666654

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=97.14  E-value=0.0014  Score=48.26  Aligned_cols=23  Identities=35%  Similarity=0.611  Sum_probs=18.7

Q ss_pred             CcCCCCCeeE-EeeCCcEEEEEEEEecC
Q psy12782        147 CQGDSGGPLM-MERTGRWFLIGIVSAGY  173 (203)
Q Consensus       147 c~~d~G~pl~-~~~~~~~~lvGv~s~~~  173 (203)
                      -.|||||||+ .++.    ++||.+++.
T Consensus       139 ~~GDSGGPl~~~~g~----~vGI~s~~~  162 (198)
T 2h5c_A          139 GRGDSGGSWITSAGQ----AQGVMSGGN  162 (198)
T ss_dssp             BTTCTTCEEECTTCB----EEEEEEEEC
T ss_pred             CCCcceeEEEeeCCE----EEEEEEeec
Confidence            3789999999 5433    999999974

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.12  E-value=0.0068  Score=50.27  Aligned_cols=123  Identities=19%  Similarity=0.258  Sum_probs=65.1

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCccc
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV  129 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~  129 (203)
                      ..||||||++.+    ..+.++.|........++.+.+.||.....      ..+..-.+.-+.+..    ...     .
T Consensus       133 ~~DlAvlkv~~~----~~~~~~~l~~s~~~~~G~~V~aiG~P~g~~------~tvt~Givs~~~r~~----~~~-----~  193 (448)
T 1ky9_A          133 RSDIALIQIQNP----KNLTAIKMADSDALRVGDYTVAIGNPFGLG------ETVTSGIVSALGRSG----LNA-----E  193 (448)
T ss_dssp             TTTEEEEEESSC----CSCCCCCBCCGGGCCTTCEEEEEECTTSSS------CEEEEEEEEEESSCC-------------
T ss_pred             CCCEEEEEecCC----CCCceEEecccccCCCCCEEEEEECCCCCC------CeEEeEEEeeccccc----cCC-----C
Confidence            459999999865    234566666543333689999999743211      111111222222110    000     0


Q ss_pred             ccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCC-CCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSC-AQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       130 ~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c-~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      ....++++.     ...+.|++||||+... |+  ++||.+....- ..........-+.....++++.++
T Consensus       194 ~~~~~iqtd-----a~i~~GnSGGpl~n~~-G~--vvGI~~~~~~~~~~~~g~gfaIP~~~~~~~~~~l~~  256 (448)
T 1ky9_A          194 NYENFIQTD-----AAINRGNAGGALVNLN-GE--LIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVE  256 (448)
T ss_dssp             -CCCCEEES-----CCCTTSCCCSEEECTT-SC--EEEEEECSSTTSCCCSSSEEEEEHHHHHHHHHHHHH
T ss_pred             CccCEEEEc-----CCCCCCCCCCeeECCC-CE--EEEEEEEeecCCCCccceeeeeecccchhhHHHHhh
Confidence            123456653     4678999999999743 33  99999986431 111112333444444555555443

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=96.66  E-value=0.002  Score=39.96  Aligned_cols=33  Identities=30%  Similarity=0.299  Sum_probs=27.6

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCC
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFK   43 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~   43 (203)
                      .+.|++|.+++....+.  .+.+.|.++++||+|+
T Consensus        46 ~~~v~~G~~~~~~~~~~--~~~~~v~~i~~Hp~y~   78 (80)
T 2pka_A           46 NYEVWLGRHNLFENENT--AQFFGVTADFPHPGFN   78 (80)
T ss_dssp             CCEEEESCSBTTSCCTT--CEEEEEEEEEECTTTT
T ss_pred             CcEEEEeeeEcCCCCCC--cEEEEEEEEEECcCCC
Confidence            46799999988765443  7899999999999997

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.48  E-value=0.083  Score=44.75  Aligned_cols=126  Identities=14%  Similarity=0.148  Sum_probs=59.2

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCccc
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV  129 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~  129 (203)
                      ..||||||++.+-. ...+.|+.+....  ..++.+.+.|+-......        .+..-+++...-. ....      
T Consensus       120 ~~DLAvLkv~~~~~-~~~~~pl~~g~~~--~vGd~V~aiG~P~g~~~~--------tvT~GIVSa~~r~-~~~~------  181 (539)
T 4fln_A          120 DCDIALLSVESEDF-WKGAEPLRLGHLP--RLQDSVTVVGYPLGGDTI--------SVTKGVVSRIEVT-SYAH------  181 (539)
T ss_dssp             TTTEEEEEECCSSS-STTCCCCCBCCCC--CTTCEEEEEECCSSSCCC--------EEEEEEEEEEEEE-ECTT------
T ss_pred             CCCEEEEEEeCCcC-CcCCceeecCCcC--cCCCeEEEEEcCCCCCCC--------cEEeEEECccccc-ccCC------
Confidence            35999999986422 2334555554332  357888888864221110        1111122111000 0000      


Q ss_pred             ccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       130 ~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      -........   .......|.|||||+... |+  ++||.+...........+...-+......+.+.++
T Consensus       182 ~~~~~~~IQ---tDAaInpGnSGGPLvn~~-Ge--VIGIntai~~~~~~~gigfAIP~~~v~~vl~~l~~  245 (539)
T 4fln_A          182 GSSDLLGIQ---IDAAINPGNSGGPAFNDQ-GE--CIGVAFQVYRSEETENIGYVIPTTVVSHFLTDYER  245 (539)
T ss_dssp             SCCEEEEEE---ESSCCCTTTTTSEEECSS-SC--EEEEECCCC-----CCCEEEEEHHHHHHHHHHHHT
T ss_pred             CCcceeEEE---EEeEecCCCccchhccCC-Cc--EEEEEEEEecCCCCCcceecccHHHHHHHHHHHHH
Confidence            011111122   124567899999999643 44  99998865432111223344444444455555544

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=94.47  E-value=0.081  Score=47.81  Aligned_cols=53  Identities=28%  Similarity=0.585  Sum_probs=35.6

Q ss_pred             CCCCcCCCCCeeEEee--CCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        144 KDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       144 ~~~c~~d~G~pl~~~~--~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      ...-.|||||||+.-+  +++|+|+||.+.+..-...+  ..|.-+.  .+|+++++++
T Consensus       200 ~~~~~GDSGSPlF~yD~~~kKWvLvGv~s~g~~~g~~~--~~~~~~~--~~f~~~~~~~  254 (1048)
T 1wxr_A          200 IYGEAGDSGSPLFAFDTVQNKWVLVGVLTAGNGAGGRG--NNWAVIP--LDFIGQKFNE  254 (1048)
T ss_dssp             CBCCTTCTTCEEEEEETTTTEEEEEEEEEEESSTTCSC--EEEEECC--HHHHHHHHHT
T ss_pred             CCCCCCCCCCeeeEEEcCCCeEEEEEEecccccCCccc--ceEEEeC--HHHhhhhhhc
Confidence            4556799999999877  78999999998443311111  3344443  3888887653

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=94.23  E-value=0.083  Score=37.46  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=19.8

Q ss_pred             CCCCcCCCCCeeEEeeCCcEEEEEEEEec
Q psy12782        144 KDSCQGDSGGPLMMERTGRWFLIGIVSAG  172 (203)
Q Consensus       144 ~~~c~~d~G~pl~~~~~~~~~lvGv~s~~  172 (203)
                      .....|.|||||+.. +|+  ++||.+..
T Consensus       120 a~i~pGnSGGPl~n~-~G~--VVGI~~~~  145 (163)
T 2w5e_A          120 VRTQDGMSGAPVCDK-YCR--VLAVHQTN  145 (163)
T ss_dssp             CSCSSCCTTCEEECT-TSC--EEEEEEEE
T ss_pred             EEeCCCCchhhEEcC-CCE--EEEEEccC
Confidence            357789999999974 343  99998753

>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}

Probab=90.47  E-value=0.36  Score=43.19  Aligned_cols=53  Identities=21%  Similarity=0.490  Sum_probs=33.3

Q ss_pred             CCCCcCCCCCeeEEee--CCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        144 KDSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       144 ~~~c~~d~G~pl~~~~--~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      ...-.|||||||+.-+  +++|+|+|+.+.+.+....  ---|+-+  ..+|+++++.+
T Consensus       211 ~yg~~GDSGSPLFayD~~~~KWvl~Gv~~~~~~~~g~--~n~~~i~--~~~f~~~~~~~  265 (1011)
T 3syj_A          211 IAGSKGDSGSPMFIYDAEKQKWLINGILREGNPFEGK--ENGFQLV--RKSYFDEIFER  265 (1011)
T ss_dssp             CBCCTTCTTCEEEEEETTTTEEEEEEEECC----------EEEEEC--CHHHHHHHHHH
T ss_pred             cCCCCCCCCCcceeeEcCCCeEEEEEEeeccccccCc--ccceEEe--chHHhhhhhhc
Confidence            4567889999998755  6789999999875433221  1224422  25888888764

>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3

Probab=88.13  E-value=0.22  Score=35.98  Aligned_cols=22  Identities=23%  Similarity=0.567  Sum_probs=18.8

Q ss_pred             CcCCCCCeeEEeeCCcEEEEEEEEec
Q psy12782        147 CQGDSGGPLMMERTGRWFLIGIVSAG  172 (203)
Q Consensus       147 c~~d~G~pl~~~~~~~~~lvGv~s~~  172 (203)
                      -.||||||++...+    ++||.++.
T Consensus       110 ~PGDSGsPVl~~~~----vIGV~T~s  131 (198)
T 1mbm_A          110 TSGDSGSAVVQGDA----VVGVHTGS  131 (198)
T ss_dssp             CGGGTTCEEEETTE----EEEEEEEE
T ss_pred             CCCCCCCccccCCe----EEEEEecc
Confidence            46799999999764    99999984

>3mmg_A Nuclear inclusion protein A; 3C-type protease, TEV, TVMV, viral protein, hydrolase; 1.70A {Tobacco vein mottling virus} SCOP: b.47.1.0

Probab=86.31  E-value=2.2  Score=31.99  Aligned_cols=50  Identities=18%  Similarity=0.371  Sum_probs=33.8

Q ss_pred             CCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       145 ~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +.-.|+=|+||+...+|.  +||+-|.+.....   --.|+.+..  +++++.++..
T Consensus       145 sT~~G~CGlPlVs~~Dg~--IVGiHsl~~~~~~---~N~F~~f~~--~f~~~~L~~~  194 (241)
T 3mmg_A          145 TTKDGQAGSPLVSIIDGN--ILGIHSLTHTTNG---SNYFVEFPE--KFVATYLDAA  194 (241)
T ss_dssp             CCCTTCTTCEEEETTTCC--EEEEEEEEETTTC---CEEEEECCT--THHHHHTTCS
T ss_pred             CCCCCcCCCeEEEcCCCc--EEEEEecccCCCC---cEEEEcCCH--HHHHHHhhCc
Confidence            445678899999987775  9999998754333   356777664  5555555443

>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta helix, hydrolase, M protease, secreted, transmembrane, virulence; 1.75A {Haemophilus influenzae}

Probab=85.78  E-value=0.71  Score=41.30  Aligned_cols=53  Identities=17%  Similarity=0.374  Sum_probs=33.9

Q ss_pred             CCCcCCCCCeeEEee--CCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        145 DSCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       145 ~~c~~d~G~pl~~~~--~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      ..-.|||||||+.-+  +++|.|+||.++..+-.... -..|+-+ + .+++++++++
T Consensus       257 y~~~GDSGSPlF~yD~~~~kWvl~Gvl~~~~g~~~~~-~~~w~i~-~-~~f~~~i~~~  311 (989)
T 3h09_A          257 YAVLGDSGSPLFVYDREKGKWLFLGSYDFWAGYNKKS-WQEWNIY-K-PEFAKTVLDK  311 (989)
T ss_dssp             BCCTTCTTCEEEEEETTTTEEEEEEEEEEECHHHHCC-EEEEEEC-C-HHHHHHHHHH
T ss_pred             cCCcCCCCCccceeecccceEEEEEEeecccccCCcc-cceeEec-c-HHHHHhHhhc
Confidence            457889999999755  67899999998632211111 1123333 2 6778887764

>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}

Probab=84.87  E-value=0.18  Score=36.72  Aligned_cols=44  Identities=18%  Similarity=0.251  Sum_probs=32.6

Q ss_pred             CCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHH
Q psy12782        145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWIS  195 (203)
Q Consensus       145 ~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~  195 (203)
                      ....|+||+|++..++    +|||...+..-..   .-.-++++++.+||.
T Consensus       144 ~T~~G~SGsP~~ng~~----IVGvh~G~~~~~~---~N~a~n~~~~~~~~~  187 (191)
T 1zyo_A          144 PTAAGWSGTPLYSSRG----VVGMHVGFEEIGK---LNRGVNMFYVANYLL  187 (191)
T ss_dssp             CCCTTCTTCEEECSSC----EEEEEEEEEETTT---EEEEECHHHHHHHTC
T ss_pred             CCCCCCCCCcEEcCCe----EEEEEeCcccCCc---eeeeeehHHHhhhhh
Confidence            4477999999999765    8999988754322   234788888888864

>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A {Escherichia coli O157}

Probab=83.55  E-value=0.96  Score=40.50  Aligned_cols=28  Identities=29%  Similarity=0.577  Sum_probs=22.9

Q ss_pred             CCCCcCCCCCeeEEee--CCcEEEEEEEEe
Q psy12782        144 KDSCQGDSGGPLMMER--TGRWFLIGIVSA  171 (203)
Q Consensus       144 ~~~c~~d~G~pl~~~~--~~~~~lvGv~s~  171 (203)
                      ...-.||||+||+.-+  +++|.|+||.+.
T Consensus       201 n~~~~GDSGSPlFaYD~~~~KWvl~GVl~~  230 (968)
T 3sze_A          201 NIASQGDAGSALFVYDNQKKKWVVAGTVWG  230 (968)
T ss_dssp             EECCTTCTTCEEEEEETTTTEEEEEEEEEE
T ss_pred             ccCCcCCCCCcceeEEcCCCeEEEEEEEec
Confidence            3467899999998755  678999999765

>1lvm_A Catalytic domain of the nuclear inclusion protein A (NIA); beta barrel, chymotrypsin-type cystein protease, enzyme- peptide complex; 1.80A {Tobacco etch virus} SCOP: b.47.1.3 PDB: 1lvb_A 1q31_A

Probab=83.06  E-value=6.4  Score=29.29  Aligned_cols=40  Identities=28%  Similarity=0.468  Sum_probs=28.6

Q ss_pred             CCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCC
Q psy12782        145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAY  189 (203)
Q Consensus       145 ~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~  189 (203)
                      +.-.|+=|.||+...++.  +|||-|.+..-...   -.|+.+..
T Consensus       153 sT~~G~CGlPlVs~~Dg~--IVGiHsl~~~~~~~---NyF~~f~~  192 (229)
T 1lvm_A          153 QTKDGQCGSPLVSTRDGF--IVGIHSASNFTNTN---NYFTSVPK  192 (229)
T ss_dssp             CCCTTCTTCEEEETTTCC--EEEEEEEEETTSCS---EEEEECCT
T ss_pred             eCCCCcCCCcEEECCCCc--EEEEEcccccCCCe---EEEeCCCH
Confidence            344567799999987775  99999987543332   56777765

>4ash_A NS6 protease; hydrolase, trypsin-like, calicivirus; 1.58A {Murine norovirus 1}

Probab=82.30  E-value=1.6  Score=30.18  Aligned_cols=39  Identities=28%  Similarity=0.630  Sum_probs=30.2

Q ss_pred             CCCCcCCCCCeeEEeeCCcEEEEEEEEecCC------CCCCCCCe
Q psy12782        144 KDSCQGDSGGPLMMERTGRWFLIGIVSAGYS------CAQQGQPG  182 (203)
Q Consensus       144 ~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~------c~~~~~~~  182 (203)
                      ...-.||-|.|-+....+.|+++||-..+..      |...+.|.
T Consensus       134 LGT~PGDCGcPYvykrgn~~vv~GVHtAatr~gNtVica~~g~~~  178 (185)
T 4ash_A          134 LGTIPGDAGCPYVYKKGNTWVVIGVHVAATRSGNTVIAATHGEPT  178 (185)
T ss_dssp             CSCCTTCTTCEEEEEETTEEEEEEEEEEECSSSSEEEEECSSCCS
T ss_pred             CCCCCCCCCCceEEeeCCceEEEEEEEeeccCCCEEEEEcCCCCc
Confidence            4567889999999999999999999876532      55555553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	203
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	1e-33
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	4e-32
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	5e-32
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	4e-31
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	4e-31
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	4e-30
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	4e-30
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	8e-30
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	2e-29
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	2e-29
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	7e-29
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	3e-28
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	7e-28
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	3e-27
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	4e-27
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	4e-27
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	6e-27
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	1e-26
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	2e-26
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	5e-26
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	6e-26
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	2e-25
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	2e-25
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	5e-25
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	6e-25
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	1e-24
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	2e-24
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	3e-24
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	9e-24
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	1e-23
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	3e-22
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	4e-21
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	4e-21
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	4e-21
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	8e-21
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	8e-21
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	8e-21
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	9e-21
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	2e-20
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	4e-20
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	6e-20
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	2e-19
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	3e-19
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	3e-18
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	5e-18
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	5e-18
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	1e-16
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	4e-16
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	6e-16
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	2e-15
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	1e-14
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	1e-14
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	1e-14
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	1e-13
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	2e-13
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	2e-12
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	2e-11
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	7e-11
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	4e-10
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	0.001

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score =  117 bits (294), Expect = 1e-33
 Identities = 68/183 (37%), Positives = 94/183 (51%), Gaps = 8/183 (4%)

Query: 12  VTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPI 71
           + +    ++ +V         V KI +H  F         D+++L+L   + +  ++API
Sbjct: 58  LQIVAGELDMSVNEGSEQIITVSKIILHENF--DYNLLDNDISLLKLSGSLTFNDNVAPI 115

Query: 72  CLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIY 131
            LPE+G    G      GWG    G    P  LQ V VP++ +  C   + ++     I 
Sbjct: 116 ALPEQGHTATGDVIVT-GWGTTSEGGNT-PDVLQKVTVPLVSDEDCRADYGAD----EIL 169

Query: 132 DEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTV 191
           D M+CAG   G KDSCQGDSGGPL    TG  +L GIVS GY CA+ G PG+Y  V+Y V
Sbjct: 170 DSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHV 229

Query: 192 DWI 194
           DWI
Sbjct: 230 DWI 232

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 4e-32
 Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 37  NVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAG 96
            +  + ++      YD+A+L+L+  V Y     PICLP KG+  +            +  
Sbjct: 78  EIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKL 137

Query: 97  SRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM 156
                 TLQ   +P++ N +C++ ++ +     I  +M+CAGYR G KD+C+GDSGGPL 
Sbjct: 138 RDKIQNTLQKAKIPLVTNEECQKRYRGH----KITHKMICAGYREGGKDACKGDSGGPLS 193

Query: 157 MERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
            +    W L+GI S G  CAQ+ +PG+Y  V   VDWI    
Sbjct: 194 CKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  113 bits (284), Expect = 5e-32
 Identities = 62/167 (37%), Positives = 87/167 (52%), Gaps = 6/167 (3%)

Query: 34  RKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGA 92
               +     +  +    D+A++ L+  V Y  +I PICLPE+ + F  G+    AGWGA
Sbjct: 74  LIDQIVINPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGA 133

Query: 93  LQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
           L          LQ  DVP++ N +C++          I + M+CAGY  G  DSCQGDSG
Sbjct: 134 LIYQGSTAD-VLQEADVPLLSNEKCQQQM----PEYNITENMVCAGYEAGGVDSCQGDSG 188

Query: 153 GPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           GPLM +   RW L G+ S GY CA   +PG+Y RV    +WI   ++
Sbjct: 189 GPLMCQENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFLH 235

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score =  111 bits (277), Expect = 4e-31
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 11/164 (6%)

Query: 37  NVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAG 96
            V  +  ++      D+ +++L +P     ++ P+ LP       G     +GWG   + 
Sbjct: 69  RVIRHPNYSSYNIDNDIMLIKLSKPATLNTYVQPVALPTS-CAPAGTMCTVSGWGNTMSS 127

Query: 97  SRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM 156
           +    K LQ +++PI+    C   +        I + M CAGY  G KDSCQGDSGGP++
Sbjct: 128 TADSNK-LQCLNIPILSYSDCNNSYPGM-----ITNAMFCAGYLEGGKDSCQGDSGGPVV 181

Query: 157 MERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
                   L G+VS GY CA+ G PG+Y +V    DW++  M +
Sbjct: 182 C----NGELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMAS 221

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  108 bits (270), Expect = 4e-30
 Identities = 53/171 (30%), Positives = 78/171 (45%), Gaps = 10/171 (5%)

Query: 29  YTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAA 88
               V    +  +  F  +    D+ +++L  PV+    +A + LP       G     +
Sbjct: 61  NEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSS-CAPAGTQCLIS 119

Query: 89  GWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
           GWG   +     P  LQ +D P++    CE        + +I D M+C G+  G KD+CQ
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCEASS-----SFIITDNMVCVGFLEGGKDACQ 174

Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           GDSGGP++        L GIVS GY CA    PG+Y +V   VDWI   + 
Sbjct: 175 GDSGGPVV----CNGELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIA 221

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 4e-30
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 12/168 (7%)

Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGA 92
            + I    Y    P+   +D+ ++RL         + P+         +GQ    +GWG 
Sbjct: 69  AQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQ-LANLCPKVGQKCIISGWGT 127

Query: 93  LQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
           + +     P TL   +V I    +CER +        I + M+CAG   G  D+CQGDSG
Sbjct: 128 VTSPQENFPNTLNCAEVKIYSQNKCERAYPGK-----ITEGMVCAGSSNG-ADTCQGDSG 181

Query: 153 GPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMN 199
           GPL+        L GI S G   C +  +PG+Y ++     WI   M+
Sbjct: 182 GPLVC----DGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD 225

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 8e-30
 Identities = 37/212 (17%), Positives = 69/212 (32%), Gaps = 41/212 (19%)

Query: 29  YTFGVRKINVHPYFK-------FTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFL 81
               +  +  HP +          P+   YDVA+++L   ++Y   I PICLP       
Sbjct: 69  RDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTR 128

Query: 82  ------------GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCE----------R 119
                        +                  K L   +V I +  +             
Sbjct: 129 ALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPG 188

Query: 120 WHKSNGINVVIYDEMMCAGYRGGA--KDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA- 176
           + K   I+ V+    +C G        ++C+GDSGGPL++ +  R+  +G++S G     
Sbjct: 189 YDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVC 248

Query: 177 ---------QQGQPGIYHRVAYTVDWISYIMN 199
                           +  +   + W+   + 
Sbjct: 249 KNQKRQKQVPAHARDFHINLFQVLPWLKEKLQ 280

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  107 bits (268), Expect = 2e-29
 Identities = 62/183 (33%), Positives = 88/183 (48%), Gaps = 13/183 (7%)

Query: 30  TFGVRKINVHPYF----KFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFL-GQF 84
             GV+ +  H  +        + +  D+A++ L  P+    +I P+CLP  G+  + G+ 
Sbjct: 69  QLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKI 128

Query: 85  GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAK 144
               GWG  Q   + +   LQ   VPII N  C            I  +M CAGY  G  
Sbjct: 129 CTVTGWGNTQYYGQ-QAGVLQEARVPIISNDVCNGADFYGNQ---IKPKMFCAGYPEGGI 184

Query: 145 DSCQGDSGGPLMME----RTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
           D+CQGDSGGP + E    RT RW L GIVS G  CA   +PG+Y +V+   +WI   + T
Sbjct: 185 DACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAIKT 244

Query: 201 ATN 203
            + 
Sbjct: 245 HSE 247

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (262), Expect = 7e-29
 Identities = 62/189 (32%), Positives = 90/189 (47%), Gaps = 7/189 (3%)

Query: 13  TLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPIC 72
           T+     N            V +I  H  +        +D+A+L LD P+    ++ PIC
Sbjct: 50  TVVAGEHNIEETEHTEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPIC 109

Query: 73  LPEKG-EDFLGQFGWAAGWGALQAGSRLRPK-TLQAVDVPIIDNRQCERWHKSNGINVVI 130
           + +K   +   +FG     G  +   + R    LQ + VP++D   C R  K       I
Sbjct: 110 IADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRSTKFT-----I 164

Query: 131 YDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYT 190
           Y+ M CAG+  G +DSCQGDSGGP + E  G  FL GI+S G  CA +G+ GIY +V+  
Sbjct: 165 YNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRY 224

Query: 191 VDWISYIMN 199
           V+WI     
Sbjct: 225 VNWIKEKTK 233

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (259), Expect = 3e-28
 Identities = 62/173 (35%), Positives = 90/173 (52%), Gaps = 8/173 (4%)

Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWG 91
           +    +  + +F       D+A+L L+ PV+   H+  + LP   E F  G   W  GWG
Sbjct: 72  LPVSRIIVHPQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWG 131

Query: 92  ALQAGSRL-RPKTLQAVDVPIIDNRQCER----WHKSNGINVVIYDEMMCAGYRGGAKDS 146
            +    RL  P  L+ V VPI++N  C+        +     ++ D+M+CAG     +DS
Sbjct: 132 DVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGNTR--RDS 189

Query: 147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           CQGDSGGPL+ +  G W   G+VS G  CAQ  +PGIY RV Y +DWI + + 
Sbjct: 190 CQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVP 242

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (256), Expect = 7e-28
 Identities = 58/181 (32%), Positives = 79/181 (43%), Gaps = 8/181 (4%)

Query: 20  NSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED 79
            S           +++I  HP+F        YD+A+L L++P +Y   + PICLP+    
Sbjct: 67  QSQRSAPGVQERRLKRIISHPFFND--FTFDYDIALLELEKPAEYSSMVRPICLPDASHV 124

Query: 80  FLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGY 139
           F                       LQ  ++ +I+   CE           I   MMC G+
Sbjct: 125 FPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCENLLPQQ-----ITPRMMCVGF 179

Query: 140 RGGAKDSCQGDSGGPLMM-ERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
             G  DSCQGDSGGPL   E  GR F  G+VS G  CAQ+ +PG+Y R+    DWI    
Sbjct: 180 LSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENT 239

Query: 199 N 199
            
Sbjct: 240 G 240

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  101 bits (251), Expect = 3e-27
 Identities = 45/162 (27%), Positives = 71/162 (43%), Gaps = 11/162 (6%)

Query: 39  HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSR 98
           + +          D+ +LRL +P      + PI LP +     G    A+GWG+      
Sbjct: 74  NEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKL-GSTCLASGWGSTTPIKF 132

Query: 99  LRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME 158
             P  LQ V++ ++ N  C++ H+       + D M+CAG   G   +C+ DSGGPL+  
Sbjct: 133 KYPDDLQCVNLKLLPNEDCDKAHEMK-----VTDAMLCAGEMDGGSYTCEHDSGGPLI-- 185

Query: 159 RTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMN 199
                 L GI S G   C +  +P +Y ++     WI   M 
Sbjct: 186 --CDGILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMA 225

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 4e-27
 Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 4/164 (2%)

Query: 36  INVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQA 95
           +      +   +  R D+A+L+L  P      + P CLP        +       G  + 
Sbjct: 86  VQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECF-ITGWGET 144

Query: 96  GSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPL 155
                   L    +P+I+N+ C R+   NG    +    +CAG+  G  DSCQGDSGGPL
Sbjct: 145 QGTFGAGLLMEAQLPVIENKVCNRYEFLNGR---VQSTELCAGHLAGGTDSCQGDSGGPL 201

Query: 156 MMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           +     ++ L G+ S G  CA+  +PG+Y RV+  V WI  +M 
Sbjct: 202 VCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR 245

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  100 bits (250), Expect = 6e-27
 Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 8/174 (4%)

Query: 27  PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW 86
            +   GV  I VH  +       R D+A+++L   V+    I   CLP +G      +  
Sbjct: 82  GSLYVGVDTIFVHEKWNSFL--VRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPC 139

Query: 87  AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDS 146
                     +      LQ    P++D   C +          + + M+CAG  G    +
Sbjct: 140 FVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTT---VKETMVCAGGDGV-ISA 195

Query: 147 CQGDSGGPLMMERTGRWFLIGIVS--AGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           C GDSGGPL  +  G+W + GIVS  +G SC    +P ++ RV+  +DWI+  +
Sbjct: 196 CNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (248), Expect = 1e-26
 Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 11/150 (7%)

Query: 51  YDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVP 110
            D+ +LRL +P      + PI LP K      +   A+GWG++      +P  LQ V + 
Sbjct: 95  DDLMLLRLSKPADITDVVKPIALPTKEPKPGSKC-LASGWGSITPTRWQKPDDLQCVFIT 153

Query: 111 IIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS 170
           ++ N  C + +        + D M+CAG  GG KD+C+ DSGGPL+        L G  S
Sbjct: 154 LLPNENCAKVYLQK-----VTDVMLCAGEMGGGKDTCRDDSGGPLIC----DGILQGTTS 204

Query: 171 AG-YSCAQQGQPGIYHRVAYTVDWISYIMN 199
            G   C + G P IY  +     WI   M 
Sbjct: 205 YGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 99.4 bits (246), Expect = 2e-26
 Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 11/164 (6%)

Query: 37  NVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAG 96
            V    +        D+ +L L  P      +  I LP K E  +G    A+GWG+    
Sbjct: 79  IVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTK-EPKVGSTCLASGWGSTNPS 137

Query: 97  SRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM 156
             +    LQ V++ ++ N +C   +K N     + D M+CAG   G KD+C GDSGGPL+
Sbjct: 138 EMVVSHDLQCVNIHLLSNEKCIETYKDN-----VTDVMLCAGEMEGGKDTCAGDSGGPLI 192

Query: 157 MERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMN 199
                   L GI S G + CA+   P IY ++     WI  +M 
Sbjct: 193 C----DGVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMK 232

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 98.3 bits (243), Expect = 5e-26
 Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 10/198 (5%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           ++R  QV LG+Y  +               + VHP +     A   D+A+++L R  Q  
Sbjct: 39  TSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLG 98

Query: 66  PHIAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSN 124
             +    LP  G+        + +GWG L  G    P  LQ   +P +D   C +W    
Sbjct: 99  DKVQLANLPPAGDILPNEAPCYISGWGRLYTGGP-LPDKLQQALLPTVDYEHCSQWDWWG 157

Query: 125 GINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM-ERTGRWFLIGIVS--AGYSCAQQGQP 181
                +   M+CAG     +  C GDSGGPL      G W + G+ S  + + C    +P
Sbjct: 158 IT---VKKTMVCAGGDT--RSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKP 212

Query: 182 GIYHRVAYTVDWISYIMN 199
            ++ RV+  +DWI   + 
Sbjct: 213 TVFTRVSAFIDWIDETIA 230

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score = 97.8 bits (242), Expect = 6e-26
 Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 10/161 (6%)

Query: 39  HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSR 98
             + +FT +   +D+AVLRL  P+ +  ++AP  LP        +    +GWG   +   
Sbjct: 75  IKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPATGTKC-LISGWGNTASSGA 133

Query: 99  LRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME 158
             P  LQ +D P++   +CE  +        I   M C G+  G KDSCQGDSGGP++  
Sbjct: 134 DYPDELQCLDAPVLSQAKCEASYPGK-----ITSNMFCVGFLEGGKDSCQGDSGGPVVC- 187

Query: 159 RTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
                 L G+VS G  CAQ+ +PG+Y +V   V WI   + 
Sbjct: 188 ---NGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIA 225

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score = 96.3 bits (238), Expect = 2e-25
 Identities = 50/157 (31%), Positives = 69/157 (43%), Gaps = 8/157 (5%)

Query: 39  HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG-EDFLGQFGWAAGWGALQAGS 97
                 +   +  D+A+L+L   +    +I    L   G +   G     AGWGA   G 
Sbjct: 71  SVRVHPSYSGNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGG 130

Query: 98  RLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM 157
              P  L  V VPI+    C   + ++ I     ++M CAG   G KDSCQGDSGGP++ 
Sbjct: 131 SSTPVNLLKVTVPIVSRATCRAQYGTSAIT----NQMFCAGVSSGGKDSCQGDSGGPIVD 186

Query: 158 ERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI 194
                  LIG VS G  CA+    G+Y  V     +I
Sbjct: 187 ---SSNTLIGAVSWGNGCARPNYSGVYASVGALRSFI 220

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 95.6 bits (236), Expect = 5e-25
 Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 6/168 (3%)

Query: 34  RKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGAL 93
           +KI VHPY+     A  YD+A+LRL + V    ++    LP  G               L
Sbjct: 75  QKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGL 134

Query: 94  QAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGG 153
              +    +TLQ   +P +D   C            + + M+CAG  G  +  CQGDSGG
Sbjct: 135 TRTNGQLAQTLQQAYLPTVDYAICSSSSYWGST---VKNSMVCAGGDGV-RSGCQGDSGG 190

Query: 154 PLMMERTGRWFLIGIVS--AGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           PL     G++ + G+ S  +   C    +P ++ RV+  + WI+ ++ 
Sbjct: 191 PLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIA 238

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (233), Expect = 1e-24
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 14/169 (8%)

Query: 39  HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED-----FLGQFGWAAGWGAL 93
             +  ++      D+A+L L +P      I PICLP+ G         GQ     GWG  
Sbjct: 75  FVHPNYSKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYH 134

Query: 94  QAGS----RLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQG 149
            +      R R   L  + +P++ + +C     +      + + M+CAG  G  +D+C+G
Sbjct: 135 SSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNM-----VSENMLCAGILGDRQDACEG 189

Query: 150 DSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           DSGGP++    G WFL+G+VS G  C      G+Y +V+  +DWI   +
Sbjct: 190 DSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.4 bits (233), Expect = 2e-24
 Identities = 46/167 (27%), Positives = 72/167 (43%), Gaps = 6/167 (3%)

Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGA 92
           +      P+ + T      D+ +++L    +   H+  + +  K     G      GWGA
Sbjct: 73  LEIKKFIPFSRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGA 132

Query: 93  LQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
               S     TL+ V V ++  + C      NG +  I  +M+CAG   G KDSC+GD+G
Sbjct: 133 TDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNG-DPFITKDMVCAGDAKGQKDSCKGDAG 191

Query: 153 GPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYT-VDWISYIM 198
           GPL+     +     IVS G+ C    +PGIY  +      WI   +
Sbjct: 192 GPLIC----KGVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNL 234

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.1 bits (227), Expect = 9e-24
 Identities = 53/165 (32%), Positives = 83/165 (50%), Gaps = 8/165 (4%)

Query: 37  NVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAG 96
            V  + +FT +   +D+AVLRL  P+ +  ++AP CLPE+            G  +    
Sbjct: 73  VVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGR 132

Query: 97  SRLR---PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGG 153
           +  +      L+ ++VP +D   C+        + +I   M CAGY    +D+CQGDSGG
Sbjct: 133 THEKGRQSTRLKMLEVPYVDRNSCKLSS-----SFIITQNMFCAGYDTKQEDACQGDSGG 187

Query: 154 PLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           P +      +F+ GIVS G  CA++G+ GIY +V   + WI   M
Sbjct: 188 PHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.5 bits (228), Expect = 1e-23
 Identities = 59/168 (35%), Positives = 87/168 (51%), Gaps = 5/168 (2%)

Query: 37  NVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF----LGQFGWAAGWGA 92
            V     + P    +D+A+LRL +PV    H+ P+CLPE+          +F   +GWG 
Sbjct: 75  QVIIPSTYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQ 134

Query: 93  LQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
           L          L  ++VP +  + C +  +  G +  I + M CAGY  G+KDSC+GDSG
Sbjct: 135 LLDRGA-TALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSG 193

Query: 153 GPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
           GP      G W+L GIVS G  CA  G  G+Y RV+  ++W+  +M +
Sbjct: 194 GPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRS 241

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.3 bits (217), Expect = 3e-22
 Identities = 53/175 (30%), Positives = 78/175 (44%), Gaps = 7/175 (4%)

Query: 27  PAYTFGVRKINVHP-YFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFG 85
                 +R+++VHP Y +        D+A+L L+  V   P++ PICLP+    +    G
Sbjct: 68  KLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFY--DLG 125

Query: 86  WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKD 145
                             L+ V +P+ + + CE W +      V    M CAG+    +D
Sbjct: 126 LMGYVSGFGVMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQD 185

Query: 146 SCQGDSGGPLMMER--TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
           +CQGDSGG   +    T RW   GIVS G  C++    G Y +V   VDWI   M
Sbjct: 186 ACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVDWIKKEM 238

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 85.6 bits (210), Expect = 4e-21
 Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 7/174 (4%)

Query: 29  YTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAA 88
               V K+ VH  +     ++  D+A+L+L  PV     I   CLP  G      +    
Sbjct: 70  LAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYV 129

Query: 89  GWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
                   +   P  LQ   + ++D   C +               M      G   SC 
Sbjct: 130 TGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGST----VKTNMICAGGDGIISSCN 185

Query: 149 GDSGGPLMME-RTGRWFLIGIVSAGYS--CAQQGQPGIYHRVAYTVDWISYIMN 199
           GDSGGPL  +   G+W + GIVS G S  C    +P ++ RV+  +DWI+ ++ 
Sbjct: 186 GDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIA 239

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 85.1 bits (209), Expect = 4e-21
 Identities = 44/163 (26%), Positives = 67/163 (41%), Gaps = 10/163 (6%)

Query: 37  NVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAG 96
               +  +       D+ +++L         +A I LP        Q    +GWG  ++ 
Sbjct: 69  KSIVHPSYNSNTLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQC-LISGWGNTKSS 127

Query: 97  SRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM 156
               P  L+ +  PI+ +  C+  +        I   M CA    G  DSCQGDSGGP++
Sbjct: 128 GTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAYGLEGKGDSCQGDSGGPVV 182

Query: 157 MERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
                   L GIVS G  C  + +PG+Y +V   V WI   + 
Sbjct: 183 ----CSGKLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIA 221

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.2 bits (209), Expect = 4e-21
 Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 12/165 (7%)

Query: 36  INVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQ 94
           + + P+  +  +    D+ +L+L    +    + P+ LP +      G   + AGWG L 
Sbjct: 73  VKIIPHPAYNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLG 132

Query: 95  AGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGP 154
              +    TLQ V++ + ++++CE +      N       +CAG     + S +GDSGGP
Sbjct: 133 PMGK-YSDTLQEVELTVQEDQKCESYL----KNYFDKANEICAGDPKIKRASFRGDSGGP 187

Query: 155 LMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           L+     +    GIVS G +      P  + +V+  + WI   M 
Sbjct: 188 LVC----KKVAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKTMK 226

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (207), Expect = 8e-21
 Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 4/152 (2%)

Query: 49  DRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVD 108
           +  D+ +++L RP      ++ I LP  G     +   +                  A  
Sbjct: 81  EGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHL 140

Query: 109 VPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGI 168
             + + +  +       +N    +  +CAG        C+GD GGPL+ E+     ++G+
Sbjct: 141 YIMGNEKCSQHHRGKVTLN----ESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGV 196

Query: 169 VSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
           +  G  CA   +PGI+ RVAY   WI  I+ T
Sbjct: 197 IVPGRGCAIPNRPGIFVRVAYYAKWIHKIILT 228

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.4 bits (207), Expect = 8e-21
 Identities = 45/174 (25%), Positives = 72/174 (41%), Gaps = 10/174 (5%)

Query: 29  YTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAA 88
               V+K   +P +         D+ +L+L    +   ++  + LP+KG+D         
Sbjct: 65  QIMLVKKEFPYPCYDP--ATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQV 122

Query: 89  GWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
                   S     TL+ V++ IID + C   +  N   V I   M+CAG   G +DSC 
Sbjct: 123 AGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPV-IGMNMVCAGSLRGGRDSCN 181

Query: 149 GDSGGPLMMERTGRWFLIGIVSAGYS--CAQQGQPGIYHRVAYT-VDWISYIMN 199
           GDSG PL+          G+ S G    C     PG+Y  ++   ++WI   + 
Sbjct: 182 GDSGSPLLC----EGVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIK 231

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 8e-21
 Identities = 49/194 (25%), Positives = 78/194 (40%), Gaps = 13/194 (6%)

Query: 6   SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYM 65
           +A   +  L  ++    +    +       +    +  +   +   D+ +LRL RP +  
Sbjct: 39  AAHCKKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLS 98

Query: 66  PHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNG 125
             I P+   E+            GWG    G    P T+Q   + ++   +CE  +    
Sbjct: 99  ELIQPLP-LERDCSANTTSCHILGWGKTADGDF--PDTIQCAYIHLVSREECEHAYPGQ- 154

Query: 126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAG-YSCAQQGQPGIY 184
               I   M+CAG     KDSCQGDSGGPL+        L G+VS G   C  + +PG+Y
Sbjct: 155 ----ITQNMLCAGDEKYGKDSCQGDSGGPLVC----GDHLRGLVSWGNIPCGSKEKPGVY 206

Query: 185 HRVAYTVDWISYIM 198
             V    +WI   +
Sbjct: 207 TNVCRYTNWIQKTI 220

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 84.4 bits (207), Expect = 9e-21
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 11/168 (6%)

Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGA 92
                +   +        +D+ +LRL +P +    +  + LP +     G   + +GWG 
Sbjct: 77  FDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKL-GSTCYTSGWGL 135

Query: 93  LQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
           +   +     TLQ V++ +  N +C R +        + + ++CA +R  +   C GDSG
Sbjct: 136 ISTFTNRGSGTLQCVELRLQSNEKCARAY-----PEKMTEFVLCATHRDDSGSICLGDSG 190

Query: 153 GPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMN 199
           G L+          GI S GYS CA      ++ +V     WI   + 
Sbjct: 191 GALIC----DGVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIE 234

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 83.3 bits (204), Expect = 2e-20
 Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 7/165 (4%)

Query: 36  INVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQA 95
           + +H  +     A  YD+A+LRL+        +    LP   +                +
Sbjct: 77  VFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTS 136

Query: 96  GSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPL 155
                  +L+   +P +D+  C               +       GGA   C GDSGGPL
Sbjct: 137 TGGPLSDSLKQAWLPSVDHATCSSSGWWGS-----TVKTTMVCAGGGANSGCNGDSGGPL 191

Query: 156 MMERTGRWFLIGIVS--AGYSCAQQGQPGIYHRVAYTVDWISYIM 198
             +  G +++ G+ S  +   C    +P ++ RV+  + W++ IM
Sbjct: 192 NCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM 236

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 82.4 bits (202), Expect = 4e-20
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 14/164 (8%)

Query: 37  NVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQA 95
               +  +    + +D+ +L+L++ V+  P +  + LP   +    G   WAAGWG    
Sbjct: 74  KQIIHESYNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGV 133

Query: 96  GSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPL 155
                  TL+ V++ I+D + C  +          Y   +C G     + +  GDSGGPL
Sbjct: 134 RDPTSY-TLREVELRIMDEKACVDYRY------YEYKFQVCVGSPTTLRAAFMGDSGGPL 186

Query: 156 MMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           +          GIVS G+  A    P I+ RV+  V WI+ ++N
Sbjct: 187 LC----AGVAHGIVSYGHPDA--KPPAIFTRVSTYVPWINAVIN 224

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 82.1 bits (201), Expect = 6e-20
 Identities = 48/166 (28%), Positives = 74/166 (44%), Gaps = 10/166 (6%)

Query: 39  HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSR 98
               K   +    D+ +++LD+P+    HIAP+ LP       G      GWG++     
Sbjct: 73  ICPNKNNNEVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSV-GSVCRIMGWGSITPVKE 131

Query: 99  LRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME 158
             P      ++ ++D+  C+  +      ++     +CAG   G KD+C GDSGGPL+  
Sbjct: 132 TFPDVPYCANINLLDHAVCQAGYP----ELLAEYRTLCAGIVQGGKDTCGGDSGGPLIC- 186

Query: 159 RTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMNTATN 203
                   GIVS G + C Q  +PGIY  V    DWI   +   T+
Sbjct: 187 ---NGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTD 229

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 80.9 bits (198), Expect = 2e-19
 Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 13/168 (7%)

Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGA 92
           ++  +   +  +       D+AV+RL  PV     IA + LP   +  +G      GWG 
Sbjct: 68  IQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPST-DVGVGTVVTPTGWGL 126

Query: 93  LQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
               +      L+ VDVPI+ N  C+  +       ++ D  +C    GG K +C GDSG
Sbjct: 127 PSDSALGISDVLRQVDVPIMSNADCDAVYG------IVTDGNICIDSTGG-KGTCNGDSG 179

Query: 153 GPLMMERTGRWFLIGIVSAGYSCA-QQGQPGIYHRVAYTVDWISYIMN 199
           GPL           GI S G +   + G P  + RV Y +DWI     
Sbjct: 180 GPLN----YNGLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTG 223

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 3e-19
 Identities = 48/167 (28%), Positives = 72/167 (43%), Gaps = 12/167 (7%)

Query: 34  RKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGA 92
             +   P+    P    +D+ +L+L       P + P+       D   G     AGWG 
Sbjct: 71  DVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGI 130

Query: 93  LQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
           +    R RP +LQ V +P++D   C R    +G                  +DSC+GDSG
Sbjct: 131 VNHAGR-RPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNR-----RDSCKGDSG 184

Query: 153 GPLMMERTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIM 198
           GPL+        L G+V++G   C  + +PGIY RVA    WI  ++
Sbjct: 185 GPLV----CGGVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVL 227

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 3e-18
 Identities = 54/184 (29%), Positives = 80/184 (43%), Gaps = 17/184 (9%)

Query: 29  YTFGVRKINVHPYFKFTPQAD-----RYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LG 82
                  + +HP +K     +       D+A++RL  PV+  P ++PICLP    D+ L 
Sbjct: 77  KMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLM 136

Query: 83  QFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI----NVVIYDEMMCAG 138
                   G  +   R R   L+A  +P+   R+C+              V    M+CAG
Sbjct: 137 DGDLGLISGWGRTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAG 196

Query: 139 YRGGAKDSCQGDSGGPLMMER---TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWIS 195
              G  DSC+GDSGG   ++      +++  G+VS G  C   G  G+Y RV   VDWI 
Sbjct: 197 GEKG-MDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQC---GTYGLYTRVKNYVDWIM 252

Query: 196 YIMN 199
             M 
Sbjct: 253 KTMQ 256

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.1 bits (188), Expect = 5e-18
 Identities = 58/178 (32%), Positives = 85/178 (47%), Gaps = 5/178 (2%)

Query: 27  PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKG-EDFLGQFG 85
           P YT    +                D+A+++L+  V    +I PICLP K  E F+    
Sbjct: 63  PHYTQAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDD 122

Query: 86  WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCER-WHKSNGINVVIYDEMMCAGYRGGAK 144
                G          + L  VD+PI+D+++C   + K       +   M+CAG   G K
Sbjct: 123 IGTASGWGLTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGK 182

Query: 145 DSCQGDSGGPLMM--ERTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIMN 199
           DSC+GDSGG L+     T RWF+ GIVS G  +C + GQ G+Y +V   + WI  I++
Sbjct: 183 DSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIIS 240

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 76.7 bits (187), Expect = 5e-18
 Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 4/139 (2%)

Query: 63  QYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHK 122
           +    I    L         Q  +             + + L   +VP + +  C   + 
Sbjct: 87  KLAQPINQPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYG 146

Query: 123 SNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM-ERTGRWFLIGIVSAGYSCAQQGQP 181
           +  +     +E+       G  D+CQGDSGGP+   +    W  +GIVS GY CA+ G P
Sbjct: 147 NELVA---NEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYP 203

Query: 182 GIYHRVAYTVDWISYIMNT 200
           G+Y  V+     I+    T
Sbjct: 204 GVYTEVSTFASAIASAART 222

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 73.9 bits (180), Expect = 1e-16
 Identities = 15/168 (8%), Positives = 31/168 (18%), Gaps = 11/168 (6%)

Query: 29  YTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAA 88
                     +     +    +    V        +                     + A
Sbjct: 81  RAPNTPASGANGDG--SMSQTQSGSTVKATYATSDFTLLELNNAANPA------FNLFWA 132

Query: 89  GWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQ 148
           GW             +   +V                         +   ++     +  
Sbjct: 133 GWDRRDQNYP-GAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEP 191

Query: 149 GDSGGPLMMER-TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWIS 195
           G SG P+          L G  S+  +     +   Y RV  +     
Sbjct: 192 GSSGSPIYSPEKRVLGQLHGGPSSCSATG-TNRSDQYGRVFTSWTGGG 238

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (174), Expect = 4e-16
 Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 12/167 (7%)

Query: 33  VRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGA 92
           V++   HP +   P+    D+ +L+L+R  +    + P+ LP            +     
Sbjct: 71  VKRPIPHPAY--NPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWG 128

Query: 93  LQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSG 152
             A       TLQ V + + ++R+CE   +    +       +C G     K S +GDSG
Sbjct: 129 QTAPLGKHSHTLQEVKMTVQEDRKCESDLR----HYYDSTIELCVGDPEIKKTSFKGDSG 184

Query: 153 GPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           GPL+          GIVS G +      P    +V+  V WI   M 
Sbjct: 185 GPLVC----NKVAQGIVSYGRNNGMP--PRACTKVSSFVHWIKKTMK 225

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.3 bits (173), Expect = 6e-16
 Identities = 42/172 (24%), Positives = 64/172 (37%), Gaps = 13/172 (7%)

Query: 27  PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW 86
                 VR+   HP +         D+ +L+L R       ++PI LP    +       
Sbjct: 65  TQQVIPVRRPIPHPDYNDETL--ANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMC 122

Query: 87  AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDS 146
           +         +      LQ VD+ +    +C    K+      I    +CAG     K+S
Sbjct: 123 SVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARFKNY-----IPFTQICAGDPSKRKNS 177

Query: 147 CQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM 198
             GDSGGPL+          GIVS G +      P +Y R++  + WI   M
Sbjct: 178 FSGDSGGPLVC----NGVAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTM 223

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 69.8 bits (169), Expect = 2e-15
 Identities = 49/163 (30%), Positives = 74/163 (45%), Gaps = 13/163 (7%)

Query: 37  NVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAG 96
           +      +     R DVA++ L  P+++   + PI L    ED         GWG+ + G
Sbjct: 72  DAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLG 131

Query: 97  SRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM 156
               P  LQ +++ +   +QCER            D  +C   + G + +C GDSGGPL+
Sbjct: 132 GNT-PNALQEIELIVHPQKQCERDQWRV------IDSHICTLTKRG-EGACHGDSGGPLV 183

Query: 157 MERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
                    IGIVS G  CA  G+P +Y RV+  V WI+  + 
Sbjct: 184 ----ANGAQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLK 221

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 67.9 bits (164), Expect = 1e-14
 Identities = 39/165 (23%), Positives = 60/165 (36%), Gaps = 6/165 (3%)

Query: 34  RKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGAL 93
               +H  +     +   D+A+L L   +    +I    LP    +              
Sbjct: 75  DSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGR 134

Query: 94  QAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGG 153
             G+   P  LQ   +P+I   QC       G    I+D  +C     G   +C GDSGG
Sbjct: 135 TDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGAN-IWDNHICVQDPAGNTGACNGDSGG 193

Query: 154 PLMMERTGRWFLIGIVS----AGYSCAQQGQPGIYHRVAYTVDWI 194
           PL     G   ++G+ S    +G        P +Y RV+  + WI
Sbjct: 194 PLNCPD-GGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWI 237

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 1e-14
 Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 14/163 (8%)

Query: 39  HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFL-GQFGWAAGWGALQAGS 97
             + ++  +  + D+ +L+L R V+   ++ P+ LP   E    G     AGWG +    
Sbjct: 75  IRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMRR 134

Query: 98  RLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM 157
                TL+ V + +  +RQC R               +C G R   K + +GDSGGPL+ 
Sbjct: 135 G--TDTLREVQLRVQRDRQCLRIF-----GSYDPRRQICVGDRRERKAAFKGDSGGPLLC 187

Query: 158 ERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT 200
                    GIVS G S      P ++ RV+  + WI   M +
Sbjct: 188 ----NNVAHGIVSYGKSSGVP--PEVFTRVSSFLPWIRTTMRS 224

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (163), Expect = 1e-14
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 12/166 (7%)

Query: 34  RKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGAL 93
             I    + K+      +D+ +L+L         +  +  P +                 
Sbjct: 69  EVIKQFRHPKYNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGR 128

Query: 94  QAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGG 153
               +    TLQ V + ++D + C  +          ++  +C G     K + +GDSGG
Sbjct: 129 TGVLKPGSDTLQEVKLRLMDPQACSHFRD------FDHNLQLCVGNPRKTKSAFKGDSGG 182

Query: 154 PLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN 199
           PL+          GIVS G S A    P ++ R+++   WI+ I+ 
Sbjct: 183 PLLC----AGVAQGIVSYGRSDA--KPPAVFTRISHYRPWINQILQ 222

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 1e-13
 Identities = 33/166 (19%), Positives = 54/166 (32%), Gaps = 18/166 (10%)

Query: 37  NVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAG 96
           +      + PQ +  D+ +L+LDR       +  + LP +                 Q  
Sbjct: 74  SSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRS 133

Query: 97  SRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM 156
                +  + V+V +    QC   +             +C G        C GD G PL+
Sbjct: 134 GGRLSRFPRFVNVTVTPEDQCRPNN-------------VCTGVLTRRGGICNGDGGTPLV 180

Query: 157 MERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT 202
                     G+ S       +G P  + RVA   DWI  ++N   
Sbjct: 181 C----EGLAHGVASFSLGPCGRG-PDFFTRVALFRDWIDGVLNNPG 221

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (155), Expect = 2e-13
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 19/161 (11%)

Query: 39  HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSR 98
                +  +    D+ +++L  P      +A + LP++ +         A          
Sbjct: 78  VFLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHD 137

Query: 99  LRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME 158
              + LQ ++V ++                      +C          C GDSGGPL+  
Sbjct: 138 PPAQVLQELNVTVVTFFCRPHN--------------ICTFVPRRKAGICFGDSGGPLIC- 182

Query: 159 RTGRWFLIGIVSAG-YSCAQQGQPGIYHRVAYTVDWISYIM 198
                 + GI S   + CA +  P  + RVA  VDWI   +
Sbjct: 183 ---DGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTL 220

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 61.8 bits (148), Expect = 2e-12
 Identities = 38/162 (23%), Positives = 60/162 (37%), Gaps = 10/162 (6%)

Query: 39  HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSR 98
             +  F P     DVA++++                 +  +   +  WA   G  Q+ + 
Sbjct: 75  ISHSMFNPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTD 134

Query: 99  LRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME 158
                LQ     +IDN +C + +        I  E    G     K  C GDSGGP ++ 
Sbjct: 135 --TVILQYTYNLVIDNDRCAQEYPPG-----IIVESTICGDTSDGKSPCFGDSGGPFVLS 187

Query: 159 RTGRWFLIGIVSAGYSCA-QQGQPGIYHRVAYTVDWISYIMN 199
              +  LIG+VS       + G+P  + RV   +DWI     
Sbjct: 188 --DKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTG 227

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 2e-11
 Identities = 35/161 (21%), Positives = 55/161 (34%), Gaps = 19/161 (11%)

Query: 39  HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSR 98
                + P     D+ +L+L+       ++    LP +G          A    L   +R
Sbjct: 75  IFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNR 134

Query: 99  LRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME 158
                LQ ++V ++ +                    +C   RG     C GDSG PL+  
Sbjct: 135 GIASVLQELNVTVVTSLCRRSN--------------VCTLVRGRQAGVCFGDSGSPLVC- 179

Query: 159 RTGRWFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIM 198
                 + GI S     CA    P  +  VA  V+WI  I+
Sbjct: 180 ---NGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSII 217

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 56.9 bits (136), Expect = 7e-11
 Identities = 17/143 (11%), Positives = 28/143 (19%), Gaps = 22/143 (15%)

Query: 51  YDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVP 110
            D  ++R          +                  A              + ++     
Sbjct: 61  NDYGIVRYTDGSSPAGTVDLY-----NGSTQDISSAANAVV---------GQAIKKSGST 106

Query: 111 IIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS 170
                             V Y +            S  GDSGG            +GI S
Sbjct: 107 TKVTSGTVTAVNVT----VNYGDGPVYNMVRTTACSAGGDSGGAHFA----GSVALGIHS 158

Query: 171 AGYSCAQQGQPGIYHRVAYTVDW 193
               C+      I+  V   +  
Sbjct: 159 GSSGCSGTAGSAIHQPVTEALSA 181

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 55.1 bits (131), Expect = 4e-10
 Identities = 21/158 (13%), Positives = 47/158 (29%), Gaps = 29/158 (18%)

Query: 38  VHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGS 97
             P       A +YD AV++ D  +        I    +  +  G     +G+   +  S
Sbjct: 83  YVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIR---QVTNLTGTTIKISGYPGDKMRS 139

Query: 98  RLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMM 157
                +   +   +        ++  +                     +  G+SG  ++ 
Sbjct: 140 -TGKVSQWEMSGSVTREDTNLAYYTID---------------------TFSGNSGSAML- 176

Query: 158 ERTGRWFLIGIVSAGYSCAQQ-GQPGIYHRVAYTVDWI 194
                  ++G+ +AGYS     G P         +++ 
Sbjct: 177 --DQNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYA 212

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 19/162 (11%), Positives = 42/162 (25%), Gaps = 30/162 (18%)

Query: 39  HPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSR 98
               + T  +   D+A+++     Q       +       +   Q               
Sbjct: 80  FTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGD-- 137

Query: 99  LRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME 158
                           +      +S G    +  E M          +  G+SG P+   
Sbjct: 138 ----------------KPVATMWESKGKITYLKGEAMQYDL-----STTGGNSGSPVF-- 174

Query: 159 RTGRWFLIGIVSAGYSCAQQG----QPGIYHRVAYTVDWISY 196
              +  +IGI   G      G       + + +   ++ I++
Sbjct: 175 -NEKNEVIGIHWGGVPNEFNGAVFINENVRNFLKQNIEDINF 215

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	203
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	100.0
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	100.0
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	100.0
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	100.0
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	100.0
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	100.0
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	100.0
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	100.0
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	100.0
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	100.0
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	100.0
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	100.0
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	100.0
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	100.0
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	100.0
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	100.0
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	100.0
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	100.0
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	100.0
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.98
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	99.98
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	99.98
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	99.98
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	99.98
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	99.98
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	99.98
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	99.98
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	99.97
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	99.97
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1elva1	259	Complement C1S protease, catalytic domain {Human (	99.97
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	99.97
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	99.97
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	99.97
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	99.97
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	99.97
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	99.97
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	99.97
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	99.97
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	99.97
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	99.97
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	99.97
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	99.96
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	99.96
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	99.96
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	99.57
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.4
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	99.08
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	98.69
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	98.4
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	98.18
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	97.49
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	97.29
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	97.11
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	97.02
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	96.96
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	96.9
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	96.88
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	96.83
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	96.8
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	96.55
d1cqqa_	180	3C cysteine protease (picornain 3C) {Human rhinovi	80.94

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-34  Score=220.50  Aligned_cols=187  Identities=36%  Similarity=0.702  Sum_probs=159.8

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      .....+.+.+|........+ ...+.+.|.++++||.|+  .....||||||+|++|+.|+..++|||||...... .+.
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~hp~~~--~~~~~~diAli~L~~~v~~~~~~~picLp~~~~~~~~~~  124 (235)
T d1ekbb_          48 MEPSKWKAVLGLHMASNLTS-PQIETRLIDQIVINPHYN--KRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGR  124 (235)
T ss_dssp             SSGGGEEEEESCCBTTCCCC-TTCEEEEEEEEEECTTCB--TTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTC
T ss_pred             CCccceeeeecccccccccC-cceeEeeeeeeeeccccc--ccCccchhhhhhhcCceecCCceeeEECCCccccCCcce
Confidence            34456778888777665433 357899999999999997  57788999999999999999999999999876544 578


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcE
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW  163 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~  163 (203)
                      .+.++||+........ ...++...+.+.+.+.|.......    ...+.++|+.........|.||+|+||++.++++|
T Consensus       125 ~~~~~g~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~  199 (235)
T d1ekbb_         125 ICSIAGWGALIYQGST-ADVLQEADVPLLSNEKCQQQMPEY----NITENMVCAGYEAGGVDSCQGDSGGPLMCQENNRW  199 (235)
T ss_dssp             EEEEEESSBSSTTSCB-CSBCEEEEEEBCCHHHHHHHCTTS----CCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEE
T ss_pred             EEEEecccccccCCcc-cccceeeEEEEecHHHhccccccc----ccCcccEEEEcCCCCcccccCCCCCccEEccCCEE
Confidence            8999999987765543 567899999999999998776654    57889999987776678899999999999999999


Q ss_pred             EEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        164 FLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       164 ~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      +|+||+|++..|+..+.|.+||||++|++||+++|+
T Consensus       200 ~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i~  235 (235)
T d1ekbb_         200 LLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFLH  235 (235)
T ss_dssp             EEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             EEEEEEEecCCCCCCCCCEEEEEHHHHHHHHHHhhC
Confidence            999999999999988999999999999999999874

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-34  Score=219.70  Aligned_cols=185  Identities=36%  Similarity=0.662  Sum_probs=157.5

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      .+..+.+..+..+.... ...+.+.+.|.++++||+|+  .....+|||||+|+.|+.+++.++|+|||...... ....
T Consensus        54 ~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~i~~Hp~y~--~~~~~~diAll~L~~~~~~~~~~~~i~l~~~~~~~~~~~~  130 (241)
T d1eaxa_          54 DPTQWTAFLGLHDQSQR-SAPGVQERRLKRIISHPFFN--DFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKA  130 (241)
T ss_dssp             CGGGEEEEESCCBTTCT-TSTTCEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCE
T ss_pred             ccceeeEEeeeeecccc-cCCCcEEEEEEEEEECCccc--ccccCCcccccccCCceecCcccceeecccccccccccee
Confidence            44556777777665543 33468899999999999997  56788999999999999999999999999766544 5778


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee-CCcE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-TGRW  163 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-~~~~  163 (203)
                      +...||+........ ...|+...+++++.+.|+..++..     +.++++|++........|.+|+||||++.. +++|
T Consensus       131 ~~~~g~~~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~~-----~~~~~~c~~~~~~~~~~c~gd~G~pl~~~~~~g~~  204 (241)
T d1eaxa_         131 IWVTGWGHTQYGGTG-ALILQKGEIRVINQTTCENLLPQQ-----ITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRI  204 (241)
T ss_dssp             EEEEESSBSSTTSCB-CSBCEEEEEEECCHHHHHHHSTTT-----CCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCE
T ss_pred             EEEeccCCccccccc-cccceEEEEEEeCHHHHHHHhCcc-----ccCccceeccCCCCcccccCcccceeEEEcCCCeE
Confidence            899999877665543 677999999999999999988763     788999998777778999999999999965 6899


Q ss_pred             EEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        164 FLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       164 ~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      +|+||+|++..|+..+.|.+|+||++|++||+++++
T Consensus       205 ~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~g  240 (241)
T d1eaxa_         205 FQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENTG  240 (241)
T ss_dssp             EEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHHHC
T ss_pred             EEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            999999999999888999999999999999999985

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-35  Score=223.18  Aligned_cols=187  Identities=32%  Similarity=0.637  Sum_probs=155.4

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCC-CCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTP-QADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~-~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      ....+.|++|.++......   .+.+.|.+|++||+|+... ..+.+|||||+|++|+.++++++|||++...... .+.
T Consensus        50 ~~~~~~v~~g~~~~~~~~~---~~~~~v~~i~vhp~y~~~~~~~~~~DiAll~L~~pi~~~~~v~pi~l~~~~~~~~~~~  126 (240)
T d2qy0b1          50 SNASLDVFLGHTNVEELMK---LGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGL  126 (240)
T ss_dssp             ---CCEEEESCSBHHHHHH---HCCCCEEEEEECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTC
T ss_pred             cccceeeeeeeccccccCC---cceEEEEEEEeccccccccccccCCCceEEecCCccccccccceEEecccccccccCc
Confidence            3456899999987765433   5678999999999998532 3467999999999999999999999998876544 478


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeC--C
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT--G  161 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~--~  161 (203)
                      .+.+.|||......   ...++...+.+++.+.|+..+........+.+.++|+.........|.||+|+||++.++  +
T Consensus       127 ~~~~~g~g~~~~~~---~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~pl~~~~~~~~  203 (240)
T d2qy0b1         127 MGYVSGFGVMEEKI---AHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTD  203 (240)
T ss_dssp             EEEEEECCCCSSSC---CSBCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTC
T ss_pred             eeeecccccccccc---cccceEEEEEEcCHHHHHHHhhccccCCceecceEEeccCCccceeeccccccceEEEeCCCC
Confidence            89999999876543   567888999999999999988766555567899999987777788999999999999764  5


Q ss_pred             cEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        162 RWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       162 ~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      +|+|+||+|++.+|+..  |++||||++|++||+++|++
T Consensus       204 ~~~l~Gi~S~g~~c~~~--p~vft~v~~~~~WI~~~i~~  240 (240)
T d2qy0b1         204 RWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEMEE  240 (240)
T ss_dssp             CEEEEEEEEECSSSSSS--CEEEEEGGGGHHHHHHHTTC
T ss_pred             eEEEEEEEEECCCCCCC--CeEEEEHHHHHHHHHHHhcC
Confidence            79999999999988753  89999999999999999974

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=100.00  E-value=4.2e-34  Score=217.75  Aligned_cols=182  Identities=37%  Similarity=0.680  Sum_probs=156.1

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeE
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGW   86 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~   86 (203)
                      +..+.+..+.........  ..+...|.++++||.|+  .....+|||||+|..++.++..+.|+|++.... .....+.
T Consensus        55 ~~~~~~~~~~~~~~~~~~--~~~~~~v~~i~~h~~y~--~~~~~~diAll~l~~~v~~~~~~~~i~~~~~~~-~~~~~~~  129 (237)
T d2f91a1          55 PSGLQIVAGELDMSVNEG--SEQIITVSKIILHENFD--YNLLDNDISLLKLSGSLTFNDNVAPIALPEQGH-TATGDVI  129 (237)
T ss_dssp             CCSEEEEESCSBTTSCCS--CCEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTC-CCCSEEE
T ss_pred             ccceeEEeeecccccccC--cceeeeEEEEEEccccC--CCccccceeeeccccccccCCceeeeeccccCc-cccccee
Confidence            455666666655555444  48899999999999998  567889999999999999999999999988875 3578899


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ..|||........ +..|+...+.+++.+.|+..+...    .+.+.++|..........|.+|+||||++.++++|+|+
T Consensus       130 ~~g~g~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~c~~~~~~~~~~~~gdsG~Pl~~~~~~~~~L~  204 (237)
T d2f91a1         130 VTGWGTTSEGGNT-PDVLQKVTVPLVSDEDCRADYGAD----EILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLA  204 (237)
T ss_dssp             EEESCCSSTTCCC-CSBCEEEEEEEECHHHHHHHHCTT----TSCTTEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEE
T ss_pred             eccccccCCCCcC-CchheEEEEEEeCHHHHhhhccCC----cccCceeEeecCCCccccccCCCCCeEEEecCCeEEEE
Confidence            9999988766543 677999999999999999887653    46788999987777778999999999999999999999


Q ss_pred             EEEEecCCCCCCCCCeEEEeCCCCHHHHHHhh
Q psy12782        167 GIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM  198 (203)
Q Consensus       167 Gv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i  198 (203)
                      ||+|++..|+..+.|.+||+|++|++||++.+
T Consensus       205 Gi~S~g~~c~~~~~p~v~t~v~~y~~WI~~n~  236 (237)
T d2f91a1         205 GIVSWGYGCARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             EEEEEESSSSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             EEEEeCCCCCCCCCCEEEEEHHHHHHHHHHhC
Confidence            99999999998889999999999999999764

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-34  Score=216.81  Aligned_cols=185  Identities=37%  Similarity=0.734  Sum_probs=158.5

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      .+..+.|..+.........  ..+.+.|.+++.||.|+  .....+|||||+|++|+.+.++++|+|++...... ....
T Consensus        51 ~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~h~~~~--~~~~~~diAll~L~~~v~~~~~~~pi~~~~~~~~~~~~~~  126 (237)
T d1xx9a_          51 SPKILRVYSGILNQSEIKE--DTSFFGVQEIIIHDQYK--MAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTD  126 (237)
T ss_dssp             CGGGEEEEESCSBGGGCCT--TCCCEEEEEEEECTTCS--CTTTSCCCEEEEESSCCCCBTTBCCCBCCCTTCTTCCCSC
T ss_pred             Cccceeeeccccccccccc--ceEEEEeeEEEEecccc--cccccceeEEEEeccccccccccceEEecccccccccccc
Confidence            3455677777766665544  48899999999999997  46788999999999999999999999998877654 5678


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      +.+.||+........ ...++...+.+++.++|+..+...    .+.+.++|++........|.+|+||||++.++++|+
T Consensus       127 ~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~~~~~----~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~  201 (237)
T d1xx9a_         127 CWVTGWGYRKLRDKI-QNTLQKAKIPLVTNEECQKRYRGH----KITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWH  201 (237)
T ss_dssp             EEEEESCCSSTTCCC-CSBCEEEECCEECHHHHHHHTTTS----CCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEE
T ss_pred             cEEEEeecccccccC-CCccEEEEEEEeCHHHHhhhhcCC----CCCCceEEEecCCCCcccccCCccceeEEecCCEEE
Confidence            899999977665543 677999999999999999877654    468899999876666789999999999999999999


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      |+||+|++..|+..+.|++|+||++|++||+++|+
T Consensus       202 l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~~~  236 (237)
T d1xx9a_         202 LVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ  236 (237)
T ss_dssp             EEEEEEEESSSSCTTCCEEEECGGGGHHHHHHHHC
T ss_pred             EEEEEEeCCCCCCCCCCEEEEEhHHhHhHHHHHHC
Confidence            99999999999888999999999999999999986

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-33  Score=211.17  Aligned_cols=186  Identities=30%  Similarity=0.664  Sum_probs=155.1

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCC-----Cc
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE-----DF   80 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~-----~~   80 (203)
                      ....+.|++|..+.....+.  .+...|.++++||.|+  ..+..+|||||||.+|+.++.+++|+|||....     ..
T Consensus        46 ~~~~~~v~~g~~~~~~~~~~--~~~~~v~~i~~~~~~~--~~~~~~DiAli~L~~~v~~~~~v~picL~~~~~~~~~~~~  121 (240)
T d1autc_          46 ESKKLLVRLGEYDLRRWEKW--ELDLDIKEVFVHPNYS--KSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQ  121 (240)
T ss_dssp             SCSCCEEEESCCBTTCCCTT--CEEEEEEEEEECTTCB--TTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTS
T ss_pred             Ccccceeecccccccccccc--ceeeeeeccccceeee--ccccccceeEEEeCCcccCCcccccceeccCccccccccc
Confidence            34567899999887766654  8899999999999997  567889999999999999999999999986642     22


Q ss_pred             cCceeEEeecccccCCCCC----CccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeE
Q psy12782         81 LGQFGWAAGWGALQAGSRL----RPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLM  156 (203)
Q Consensus        81 ~~~~~~~~Gwg~~~~~~~~----~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~  156 (203)
                      .+..+.+.|||........    ....++..++.+++.+.|.......     .....+|..........|.||+|+||+
T Consensus       122 ~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~gd~G~pl~  196 (240)
T d1autc_         122 AGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEVMSNM-----VSENMLCAGILGDRQDACEGDSGGPMV  196 (240)
T ss_dssp             TTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECHHHHHHHCSSC-----CCTTEEEECCTTCCCBCCTTCTTCEEE
T ss_pred             CCCeEEEEeeccccCCCcccccccceeeecceeeEEeehhhhhhcccc-----cccceeeeccccccCCCcCCccCceeE
Confidence            4788999999976643321    2456788899999999998876643     556667766566667899999999999


Q ss_pred             EeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        157 MERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       157 ~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      ++.+++|+|+||+|++..|+..+.|++||||++|++||+++|++
T Consensus       197 ~~~~~~~~l~Gi~s~g~~c~~~~~p~vftrv~~y~~WI~~~i~~  240 (240)
T d1autc_         197 ASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRD  240 (240)
T ss_dssp             EEETTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHHHC-
T ss_pred             EcCCCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHhCC
Confidence            99999999999999999998888999999999999999999974

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.3e-33  Score=211.09  Aligned_cols=184  Identities=26%  Similarity=0.458  Sum_probs=151.6

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      .+++.+.|++|..+.....+....+.+.+.++..||.|        +|||||||++|+.++++++|+|||...... ...
T Consensus        45 ~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~DIAll~L~~~v~~~~~v~picl~~~~~~~~~~~  116 (234)
T d1si5h_          45 RDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEG--------SDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKT  116 (234)
T ss_dssp             SCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEECSST--------TCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTC
T ss_pred             CCCccceEEEEeecccccccceeEEEEeeccccCCCcc--------cceEEEeeccCccccccccccccccccccCCcce
Confidence            45678999999988777655545677778888777755        499999999999999999999999887655 466


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcE
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW  163 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~  163 (203)
                      .+.+.||+.......  ...++..++.+++.+.|...+...   ..+.+.++|+.........|.||+||||+++.+++|
T Consensus       117 ~~~~~g~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~~~~  191 (234)
T d1si5h_         117 SCSVYGWGYTGLINY--DGLLRVAHLYIMGNEKCSQHHRGK---VTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMR  191 (234)
T ss_dssp             EEEEEESSCCCCSSC--CCBCEEEEEEEECGGGTCC----------CCTTEEEEECSSSCCBCCTTCTTCEEEEECSSSE
T ss_pred             eEEEecccccccccc--cceeEEEEeeccchhHhhhhhccc---cccCCccEEEccCCcCCCCCcCccccceEEecCCeE
Confidence            778888886655432  567999999999999998765432   246889999987766789999999999999999999


Q ss_pred             EEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        164 FLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       164 ~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +|+||+|++..|+..+.|.+||||++|++||+++|++.
T Consensus       192 ~l~Gi~s~g~~c~~~~~p~vyt~i~~~~~WI~~~i~~~  229 (234)
T d1si5h_         192 MVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTY  229 (234)
T ss_dssp             EEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSSC
T ss_pred             EEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhhcC
Confidence            99999999999988889999999999999999999864

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=4.6e-33  Score=210.68  Aligned_cols=178  Identities=29%  Similarity=0.498  Sum_probs=152.1

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGW   86 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~   86 (203)
                      ...+|++|.+++....+.  .+...|.+++.||.|+  ..+..+|||||+|++|+.|++++.|+|++...... .+..+.
T Consensus        49 ~~~~v~~G~~~~~~~~~~--~~~~~v~~i~~~~~~~--~~~~~~diall~l~~~i~~~~~v~picl~~~~~~~~~~~~~~  124 (227)
T d1fi8a_          49 SKIQVTLGAHNIKEQEKM--QQIIPVVKIIPHPAYN--SKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCY  124 (227)
T ss_dssp             SEEEEEESCSBTTSCCTT--CEEEEEEEEEECTTCB--TTTTBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEE
T ss_pred             ccceeeeeecccccCCCC--ceEEEEEEEEeccccc--CccccchhhhhhccCceeeeeeEEEEEecccCcccCCCCEEE
Confidence            446799999888776654  8899999999999997  57789999999999999999999999999887544 578899


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ..|||........ ...++...+.+++.+.|...+...    ......+|+.........|.||+||||+++    ++|+
T Consensus       125 ~~g~g~~~~~~~~-~~~l~~~~~~~~~~~~c~~~~~~~----~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~----~~l~  195 (227)
T d1fi8a_         125 VAGWGKLGPMGKY-SDTLQEVELTVQEDQKCESYLKNY----FDKANEICAGDPKIKRASFRGDSGGPLVCK----KVAA  195 (227)
T ss_dssp             EEESCBSSTTCCB-CSBCEEEEEEBCCHHHHHHHTTTT----CCTTTEEEESCTTSCCBCCTTCTTSEEEET----TEEE
T ss_pred             EEeeccccCCCCC-CceeeEEEEEEEEchhhhhhhhcc----cccceeeeeeeccccCCCcCCCcCCEEEEC----CEEE
Confidence            9999987766543 678999999999999999877654    466778888766666788999999999994    4799


Q ss_pred             EEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        167 GIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       167 Gv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      ||+|++..|+  +.|.+||||++|++||+++|++
T Consensus       196 Gi~S~g~~~~--~~p~vyt~v~~y~~WI~~~i~~  227 (227)
T d1fi8a_         196 GIVSYGQNDG--STPRAFTKVSTFLSWIKKTMKK  227 (227)
T ss_dssp             EEEEEEETTC--CSCEEEEEGGGGHHHHHHHHCC
T ss_pred             EEEEEcCCCC--CCCeEEEEHHHHHHHHHHHHcC
Confidence            9999998875  4599999999999999999974

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-33  Score=212.12  Aligned_cols=163  Identities=34%  Similarity=0.656  Sum_probs=143.7

Q ss_pred             CceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceE
Q psy12782         27 PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQA  106 (203)
Q Consensus        27 ~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~  106 (203)
                      ......+.++++||.|+  .....+|||||+|++++.++++++|||||.... ..+..+.+.|||.....+......|+.
T Consensus        61 ~~~~~~~~~~~~hp~y~--~~~~~~diAll~L~~~v~~~~~~~picL~~~~~-~~~~~~~~~g~g~~~~~~~~~~~~l~~  137 (223)
T d1j16a_          61 NEQFVNAAKIIKHPNFD--RETYNNDIMLIKLSSPVKLNARVATVALPSSCA-PAGTQCLISGWGNTLSSGVNEPDLLQC  137 (223)
T ss_dssp             CCEEEEEEEEEECTTCB--TTTTBTCCEEEEESSCCCCBTTBCCCBCCSSCC-CTTCEEEEEESSCCCSSSCCCCSBCEE
T ss_pred             cceeeeeeeEEecCCCC--ccccceeEEEEEecCccccceeEEEEecCCcCC-CCCCEEEEEeeeeeeCCCccCcceeeE
Confidence            37788999999999997  467889999999999999999999999998764 468899999999877766555678999


Q ss_pred             EEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEe
Q psy12782        107 VDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR  186 (203)
Q Consensus       107 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~  186 (203)
                      ..+.+++.++|+..+..     .+.++++|+.........|.||+|+||+++.    +|+||+|++..|+..+.|.+|||
T Consensus       138 ~~~~~~~~~~C~~~~~~-----~~~~~~~C~~~~~~~~~~c~gd~g~pl~~~~----~L~Gi~s~~~~~~~~~~p~vft~  208 (223)
T d1j16a_         138 LDAPLLPQADCEASSSF-----IITDNMVCVGFLEGGKDACQGDSGGPVVCNG----ELQGIVSWGYGCALPDNPGVYTK  208 (223)
T ss_dssp             EEEEEECHHHHHSSSSC-----CCCTTEEEESCTTCSCBCCTTCTTCEEEETT----EEEEEEEECSSSSCTTCCEEEEE
T ss_pred             EEEEEEEhhHhhccccc-----eeCCCceEEecCCCCCcccCCccCCcEEEee----EEEEEEEEccCCCCCCCCEEEEE
Confidence            99999999999976653     3788999998777777899999999999964    59999999999998889999999


Q ss_pred             CCCCHHHHHHhhccc
Q psy12782        187 VAYTVDWISYIMNTA  201 (203)
Q Consensus       187 v~~~~~WI~~~i~~~  201 (203)
                      |++|++||+++|+.|
T Consensus       209 v~~~~~WI~~~i~~n  223 (223)
T d1j16a_         209 VCNYVDWIQDTIAAN  223 (223)
T ss_dssp             GGGGHHHHHHHHHHC
T ss_pred             hHHhHHHHHHHHhcC
Confidence            999999999999864

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-32  Score=210.29  Aligned_cols=189  Identities=33%  Similarity=0.602  Sum_probs=153.6

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc---c
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF---L   81 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~---~   81 (203)
                      ..+..+.|..|..+....    ..+.+.|.++++||+|+. .....||||||||++|+.+++++.|+|++......   .
T Consensus        46 ~~~~~~~v~~~~~~~~~~----~~~~~~v~~i~~hp~y~~-~~~~~~DiAll~L~~~~~~~~~v~pic~~~~~~~~~~~~  120 (242)
T d1q3xa1          46 HDASALDIRMGTLKRLSP----HYTQAWSEAVFIHEGYTH-DAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRT  120 (242)
T ss_dssp             TTTCCCEEEESCSBTTCS----CSEEEEEEEEEECTTCCT-TSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSST
T ss_pred             CCcceEEEEeeeeeeccc----cccccceeeeEEeecccc-ccccCccccccccCCCccccccEEEEecccccccccccc
Confidence            345678888887655432    367889999999999973 34468999999999999999999999998775532   3


Q ss_pred             CceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCC-CcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee-
Q psy12782         82 GQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNG-INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-  159 (203)
Q Consensus        82 ~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~-~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-  159 (203)
                      +..+...||+....+.  .+..++..++++++.+.|++.+.... ....+.+.++|+.........|.+|+||||++.. 
T Consensus       121 ~~~~~~~g~~~~~~~~--~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~  198 (242)
T d1q3xa1         121 DDIGTASGWGLTQRGF--LARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDS  198 (242)
T ss_dssp             TCEEEEEESSCCTTSS--CCSBCEEEEEEEECHHHHHHHTSSTTSCTTCSCTTEEEECCSSCCSBCCTTCTTCEEEEEET
T ss_pred             ceeeeeeeccccccCc--cccceeeeeccccCHHHHHhhhhcccccCceeccceeeeeccCCCccccccccccceEEeeC
Confidence            5677788888765554  26789999999999999998776542 2234677889988777778899999999999965 


Q ss_pred             -CCcEEEEEEEEecC-CCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        160 -TGRWFLIGIVSAGY-SCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       160 -~~~~~lvGv~s~~~-~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                       .++|+|+||+|++. .|+..+.|++||||++|++||+++|++
T Consensus       199 ~~~~~~l~Gi~S~g~~~c~~~~~p~vft~v~~~~~WI~~~v~~  241 (242)
T d1q3xa1         199 ETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENIISD  241 (242)
T ss_dssp             TTTEEEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCeEEEEEEEEeCCCCCCCCCCCEEEEEHHHhHHHHHHHHHc
Confidence             47899999999986 588888999999999999999999974

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=207.76  Aligned_cols=175  Identities=31%  Similarity=0.554  Sum_probs=149.8

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEe
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAA   88 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~   88 (203)
                      .+.|++|.......+..  .+.+.+.++++||+|+  ..++.+|||||+|+.++.+++.++|+|||.... .....+.++
T Consensus        46 ~~~v~~g~~~~~~~~~~--~~~~~~~~~~~~p~y~--~~~~~~diAll~l~~~~~~~~~v~pi~l~~~~~-~~~~~~~~~  120 (221)
T d1lo6a_          46 NLQVFLGKHNLRQRESS--QEQSSVVRAVIHPDYD--AASHDQDIMLLRLARPAKLSELIQPLPLERDCS-ANTTSCHIL  120 (221)
T ss_dssp             TCEEEESCSBTTSCCTT--CEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCBTTBCCCCBCCCTT-CCCCEEEEE
T ss_pred             ccceeeceeeecccCcc--ceeeeccccccCCCcc--cccccceeEEeecccccceeeeEEeccccccCC-cccceEEEE
Confidence            46789999888776654  8889999999999997  567899999999999999999999999998764 468899999


Q ss_pred             ecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEE
Q psy12782         89 GWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGI  168 (203)
Q Consensus        89 Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv  168 (203)
                      |||.......  ...++...+++++.++|++.+...     ..+.++|..........|.||+||||+++.    +|+||
T Consensus       121 Gwg~~~~~~~--~~~l~~~~~~~~~~~~C~~~~~~~-----~~~~~~~~~~~~~~~~~c~gd~G~Pl~~~~----~l~Gi  189 (221)
T d1lo6a_         121 GWGKTADGDF--PDTIQCAYIHLVSREECEHAYPGQ-----ITQNMLCAGDEKYGKDSCQGDSGGPLVCGD----HLRGL  189 (221)
T ss_dssp             ESSCCTTSSC--CSBCEEEEEEEECHHHHHHHSTTT-----CCTTEEEEECTTTCCBCCTTTTTCEEEETT----EEEEE
T ss_pred             ecccccCCCC--CccceEEEEEEecHHHHHHHcCCC-----ccCCceeeeccccCCCCccCCCCCcEEECC----EEEEE
Confidence            9998765542  578999999999999999988753     556666665556668899999999999965    59999


Q ss_pred             EEecC-CCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        169 VSAGY-SCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       169 ~s~~~-~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      +|++. .|+..+.|++||||++|++||+++|+
T Consensus       190 ~S~g~~~c~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1lo6a_         190 VSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ  221 (221)
T ss_dssp             EEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             EEEccCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            99987 58888889999999999999999985

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-32  Score=209.04  Aligned_cols=185  Identities=37%  Similarity=0.719  Sum_probs=149.6

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCcee
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFG   85 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~   85 (203)
                      ...+.|.+|......     ..+.+.|.++++||+|+  .....||||||+|.+|+.+++.+.|+|||...... .+..+
T Consensus        53 ~~~~~~~~~~~~~~~-----~~~~~~i~~i~~hp~~~--~~~~~~diAli~L~~~~~~~~~v~~~~l~~~~~~~~~~~~~  125 (243)
T d2fpza1          53 LAALRVQLREQHLYY-----QDQLLPVSRIIVHPQFY--TAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPC  125 (243)
T ss_dssp             GGGEEEECCCSBTTT-----TCCCEEEEEEEECTTCS--CTTTSCCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEE
T ss_pred             ceeEEEEeeeccccc-----ccEEEeeeeeecccccc--ccccccchhhhcccCccccceeEEEeecCchhhccCCCcee
Confidence            344556655544443     36789999999999997  56778999999999999999999999999776544 57889


Q ss_pred             EEeecccccCCCCC-CccCceEEEEeeeChhhHhhHhhhCCCc----ccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeC
Q psy12782         86 WAAGWGALQAGSRL-RPKTLQAVDVPIIDNRQCERWHKSNGIN----VVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT  160 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~-~~~~l~~~~~~~~~~~~C~~~~~~~~~~----~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~  160 (203)
                      .+.+||....+... ....|+...+++++.+.|+..+......    ......++|.+  ......|.+|+||||++..+
T Consensus       126 ~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~gdsGgpl~~~~~  203 (243)
T d2fpza1         126 WVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKVN  203 (243)
T ss_dssp             EEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHHHHHHTTBCSCTTSCSSCTTEEEEC--CSSSBCCTTCTTCEEEEEET
T ss_pred             EEEecccccCCCcCCCCcEeEEEEEeecCHHHhhhhhhcccccCCccceeeeeeEecC--CCCCCCccCCCCCeEEEeeC
Confidence            99999977755443 2467899999999999999877532111    12345667765  34578999999999999999


Q ss_pred             CcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       161 ~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      ++|+|+||+|++..|+..+.|.+||||++|++||+++|++
T Consensus       204 ~~~~L~Gi~s~~~~~~~~~~p~v~t~v~~y~~WI~~~i~~  243 (243)
T d2fpza1         204 GTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHYVPK  243 (243)
T ss_dssp             TEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHTTTSCC
T ss_pred             CEEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhCC
Confidence            9999999999999998888999999999999999999874

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-32  Score=209.73  Aligned_cols=173  Identities=35%  Similarity=0.639  Sum_probs=146.3

Q ss_pred             CCceEEeeEEEEeCCCCC----CCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeEEeecccccCCCCCC
Q psy12782         26 LPAYTFGVRKINVHPYFK----FTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLR  100 (203)
Q Consensus        26 ~~~~~~~v~~i~~hp~y~----~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~~~Gwg~~~~~~~~~  100 (203)
                      ...+.+.+.++..||.|.    +......||||||+|++|+.+++.++|+||+...... .+..+.+.||+........ 
T Consensus        65 ~~~~~~~v~~~~~h~~~~~~~~~~~~~~~~DiAll~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~~~~~~~-  143 (255)
T d1z8ga1          65 PHGLQLGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQ-  143 (255)
T ss_dssp             TTSEEECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCB-
T ss_pred             CccEEEEEEEEEEEeeeccccccccCCccccEEEEecCCccccCcccccceecccCcccCCCcEEEeeccccccCCCcc-
Confidence            458889999999999854    2356678999999999999999999999998876543 5788999999877655543 


Q ss_pred             ccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee----CCcEEEEEEEEecCCCC
Q psy12782        101 PKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER----TGRWFLIGIVSAGYSCA  176 (203)
Q Consensus       101 ~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~----~~~~~lvGv~s~~~~c~  176 (203)
                      ...++...+++++.+.|+..+...   ..+.+.++|..........|.+|+||||++.+    .++|+|+||+|++.+|+
T Consensus       144 ~~~l~~~~~~~~~~~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~~~~~~~~~~l~Gi~S~g~~c~  220 (255)
T d1z8ga1         144 AGVLQEARVPIISNDVCNGADFYG---NQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCA  220 (255)
T ss_dssp             CSBCEEEEEEEECHHHHTSTTTTT---TCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSS
T ss_pred             cceeEEEEEEEeCHHHhhhhhccC---ccccCcceEEecCCCCcccccCccccceEEecCCCCCCcEEEEEEEEECCCCC
Confidence            577999999999999998654432   24677888887666677899999999999975    46899999999999999


Q ss_pred             CCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        177 QQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       177 ~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      ..+.|.+||||++|++||+++|+.++
T Consensus       221 ~~~~p~vft~V~~y~~WI~~~i~~~~  246 (255)
T d1z8ga1         221 LAQKPGVYTKVSDFREWIFQAIKTHS  246 (255)
T ss_dssp             CTTCCEEEEEGGGGHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEHHHhHHHHHHHHHHcC
Confidence            98999999999999999999998775

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-32  Score=205.91  Aligned_cols=176  Identities=30%  Similarity=0.514  Sum_probs=151.2

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGW   86 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~   86 (203)
                      +.+.|++|........+.  .+...|.+++.||+|+  .....+||||++|..|+.+++.+.|+|||...... ....+.
T Consensus        48 ~~~~v~~g~~~~~~~~~~--~~~~~v~~i~~~~~~~--~~~~~~diaL~~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~  123 (224)
T d1t32a1          48 SNINVTLGAHNIQRRENT--QQHITARRAIRHPQYN--QRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCT  123 (224)
T ss_dssp             SCEEEEESCSBTTSCCTT--CEEEEEEEEEECTTCB--TTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEE
T ss_pred             ccccceeeeeeeeccccc--eeeecceeEEEeeccc--ccccccceeEEeeccccccCcccCccccccccccCCCCCEEE
Confidence            467899999887776654  7888999999999997  56788999999999999999999999999887654 578889


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ..|||.......  ...++.+.+.+++.++|++.++.     ...+.++|+.........|.+|+||||+++.    +|+
T Consensus       124 ~~g~g~~~~~~~--~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~c~~~~~~~~~~c~gdsGgPl~~~~----~l~  192 (224)
T d1t32a1         124 VAGWGRVSMRRG--TDTLREVQLRVQRDRQCLRIFGS-----YDPRRQICVGDRRERKAAFKGDSGGPLLCNN----VAH  192 (224)
T ss_dssp             EEESCCSSSSCC--CSBCEEEEEEBCCHHHHHHHSTT-----CCTTTEEEECCTTSSCBCCTTCTTCEEEETT----EEE
T ss_pred             EecccccccCCC--cceeeeeeeeecCHHHHHhhcCc-----ccccccceeecccccccccccCcCCeEEEcC----EEE
Confidence            999997665432  56799999999999999998775     3778999997777778899999999999954    699


Q ss_pred             EEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        167 GIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       167 Gv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      ||+|++..|+..  |.+||||+.|++||+++|+.
T Consensus       193 Gi~S~g~~~~~~--p~vyt~v~~y~~WI~~~i~~  224 (224)
T d1t32a1         193 GIVSYGKSSGVP--PEVFTRVSSFLPWIRTTMRS  224 (224)
T ss_dssp             EEEEECCTTCCS--CEEEEEGGGSHHHHHHHHCC
T ss_pred             EEEEEcCCCCCC--CcEEEEHHHhHHHHHHHHcC
Confidence            999999888654  99999999999999999973

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-32  Score=205.79  Aligned_cols=165  Identities=34%  Similarity=0.649  Sum_probs=143.0

Q ss_pred             CceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC----ccCceeEEeecccccCCCCCCcc
Q psy12782         27 PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED----FLGQFGWAAGWGALQAGSRLRPK  102 (203)
Q Consensus        27 ~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~----~~~~~~~~~Gwg~~~~~~~~~~~  102 (203)
                      ..+.+.+.++++||+|+  .....+|||||+|++|+.+++++.|+|||.....    .....+.+.+|+.....+.. ..
T Consensus        65 ~~~~~~~~~i~~h~~~~--~~~~~~diAll~L~~pv~~~~~v~pi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  141 (233)
T d2p3ub1          65 GEAVHEVEVVIKHNRFT--KETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQ-ST  141 (233)
T ss_dssp             CCEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCB-CS
T ss_pred             CceeecceeEEEeeccc--ccccccceeeeecccceeecccccccccCCcccccccccccceEEEecCCccccCCCc-cc
Confidence            47889999999999997  5788899999999999999999999999877432    13566888899877665533 56


Q ss_pred             CceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCe
Q psy12782        103 TLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPG  182 (203)
Q Consensus       103 ~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~  182 (203)
                      .++...+.+++.+.|...+...     +..+++|+.........|.||+||||++..+++|+|+||+|++..|+..+.|.
T Consensus       142 ~~~~~~~~~~~~~~C~~~~~~~-----~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~L~Gv~s~g~~c~~~~~p~  216 (233)
T d2p3ub1         142 RLKMLEVPYVDRNSCKLSSSFI-----ITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYG  216 (233)
T ss_dssp             BCEEEEEEBCCHHHHHHHCSSC-----CCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEEEECSSSSCTTCCE
T ss_pred             cccccccccccchhhhcccCce-----EeecceeeecccccCCCcCCCcccccEEecCCeEEEEEEEEECCCCCCCCCCE
Confidence            7888999999999999877643     67888888766677899999999999999999999999999999999888999


Q ss_pred             EEEeCCCCHHHHHHhhc
Q psy12782        183 IYHRVAYTVDWISYIMN  199 (203)
Q Consensus       183 v~t~v~~~~~WI~~~i~  199 (203)
                      +||||++|++||+++|+
T Consensus       217 vyt~v~~y~~WI~~~i~  233 (233)
T d2p3ub1         217 IYTKVTAFLKWIDRSMK  233 (233)
T ss_dssp             EEEEGGGGHHHHHHHTC
T ss_pred             EEEEHHHHHHHHHHHhC
Confidence            99999999999999985

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.9e-32  Score=206.02  Aligned_cols=188  Identities=26%  Similarity=0.446  Sum_probs=157.1

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCce
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQF   84 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~   84 (203)
                      .....+.|..+..........  .+.+.+.+++.||.|+  .....+|||||+|+.|+.+++.++|+||+..........
T Consensus        49 ~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~i~~h~~~~--~~~~~~diAll~l~~~~~~~~~~~picL~~~~~~~~~~~  124 (240)
T d1mzaa_          49 TKGQSPTVVLGAHSLSKNEAS--KQTLEIKKFIPFSRVT--SDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTK  124 (240)
T ss_dssp             CSCSCEEEEESCSBSSSCCTT--CEEEEEEEEEECCCSS--CSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCE
T ss_pred             CCcceeEEEEeecccCcCCcc--ceeEeeeeeeeecccc--ccccCcceEEEeecceeeeeeccccccccccccccceee
Confidence            345568888888777765554  8889999999999997  567789999999999999999999999998876667788


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      +.+.|||............++...+.+++.+.|+...... ......+.++|+.........|.||+||||+++.    +
T Consensus       125 ~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~~c~~~~~~~~~~C~gDsGgPl~~~~----~  199 (240)
T d1mzaa_         125 CKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYN-GDPFITKDMVCAGDAKGQKDSCKGDAGGPLICKG----V  199 (240)
T ss_dssp             EEEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTSTTTTT-TTTCCCTTEEEEECTTSCCCCCTTCTTCEEEETT----E
T ss_pred             EEEEEeccccCCcCcCCcccEEEEEEEecHHHhhhhhhcc-CCcccccceEEeccCCCCccCccCCCCCeEEECC----E
Confidence            9999999877654444678999999999999998754322 1124568889998777778899999999999953    6


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCC-CCHHHHHHhhccc
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVA-YTVDWISYIMNTA  201 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~-~~~~WI~~~i~~~  201 (203)
                      |+||+|++..|+..+.|.+||||+ +|++||+++|+..
T Consensus       200 l~Gi~S~g~~c~~~~~p~vftrvs~~y~~WI~~~i~~~  237 (240)
T d1mzaa_         200 FHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVPP  237 (240)
T ss_dssp             EEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHHTCCS
T ss_pred             EEEEEEeCCCCCCCCCCeEEEEEHHHHHHHHHHHccCC
Confidence            999999999998888999999998 6899999999854

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.2e-32  Score=203.64  Aligned_cols=178  Identities=30%  Similarity=0.548  Sum_probs=152.9

Q ss_pred             eEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEee
Q psy12782         10 VQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAG   89 (203)
Q Consensus        10 ~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~G   89 (203)
                      ..+++|........+  ..+...+.++++||.|+  ...+.+|||||+|++++.+++.+.|+||+.... .....+.+.|
T Consensus        46 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~diAll~l~~~~~~~~~~~p~cl~~~~~-~~~~~~~~~g  120 (223)
T d1hj9a_          46 IQVRLGEDNINVVEG--NEQFISASKSIVHPSYN--SNTLNNDIMLIKLKSAASLNSRVASISLPTSCA-SAGTQCLISG  120 (223)
T ss_dssp             CEEEESCSSTTSCCS--CCEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCBTTBCCCBCCSSCC-CTTCEEEEEE
T ss_pred             Ccceecccccccccc--eeeeeceeeEEeccccc--cccccchhhhhhcccceeeeeeeeccccccccc-cccceEEEEe
Confidence            456777776665555  38899999999999997  567899999999999999999999999998765 4578899999


Q ss_pred             cccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEE
Q psy12782         90 WGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIV  169 (203)
Q Consensus        90 wg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~  169 (203)
                      |+............++...+++++.++|++.+...     +.+.++|+.........|.+|+|+||+++.    +|+||+
T Consensus       121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~-----~~~~~~c~~~~~~~~~~~~gd~g~pl~~~~----~L~Gi~  191 (223)
T d1hj9a_         121 WGNTKSSGTSYPDVLKCLKAPILSDSSCKSAYPGQ-----ITSNMFCAYGLEGKGDSCQGDSGGPVVCSG----KLQGIV  191 (223)
T ss_dssp             SSCCCSSSCCCCSSCEEEEEECCCHHHHHHHSTTT-----CCTTEEECCCCCCCCCCCTTCTTCEEEETT----EEEEEE
T ss_pred             eccccCCCCCCCccceEEEEeecCHHHHHHHhCCc-----ccccceEEeecCCCcccccCCCCceeEEeC----EEEEEE
Confidence            99776655544678999999999999999987653     788899988776777899999999999964    599999


Q ss_pred             EecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        170 SAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       170 s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |++..|+..+.|.+||||++|++||+++|+.+
T Consensus       192 S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~~  223 (223)
T d1hj9a_         192 SWGSGCQAKNKPGVYTKVCNYVSWIKQTIASN  223 (223)
T ss_dssp             EECSCCCCCCCCCEEEEGGGGHHHHHHHHTTC
T ss_pred             EEcCCCCCCCCCEEEEEHHHHHHHHHHHHhcC
Confidence            99999988889999999999999999999864

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-32  Score=205.78  Aligned_cols=182  Identities=35%  Similarity=0.612  Sum_probs=150.7

Q ss_pred             EEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc---cCceeEE
Q psy12782         11 QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF---LGQFGWA   87 (203)
Q Consensus        11 ~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~---~~~~~~~   87 (203)
                      .+..+.........  ....+.+.++.+||+|+.......+|||||||++|+.++..+.|+|+|......   ....+.+
T Consensus        50 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~diAllkL~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~  127 (235)
T d1rfna_          50 TVVAGEHNIEETEH--TEQKRNVIRIIPHHNYNAAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYV  127 (235)
T ss_dssp             EEEESCSBSSSCCS--CCEEEEEEEEEECTTCBTTTBSSTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHTTSEEEE
T ss_pred             EEEEeecccccCCC--CcceeeeeEEeeccCCCCCcCccCceEEEEEeCCCccCCCccceeeeccccccccccccceEEE
Confidence            34444444443333  377889999999999986656778999999999999999999999998765422   4677899


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      .||+........ ...|+.+.+.+++...|......     ...+..+|+.........|.+|+||||++..+++|+|+|
T Consensus       128 ~g~~~~~~~~~~-~~~l~~~~~~~~~~~~c~~~~~~-----~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~l~G  201 (235)
T d1rfna_         128 SGWGRVFHKGRS-ALVLQYLRVPLVDRATCLRSTKF-----TIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTG  201 (235)
T ss_dssp             EESCBSSTTSCB-CSBCEEEEEEBCCHHHHHHHCSS-----CCCTTEEEESCSSCSCBCCTTCTTCEEEEESSSCEEEEE
T ss_pred             eccccccccccc-cCcceEEEEecccccccccccCc-----eecCCeeEeecCCCCccccCCCCCceeEEecCCeEEEEE
Confidence            999977766543 56789999999999999887654     356777777666667899999999999999999999999


Q ss_pred             EEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        168 IVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       168 v~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      |+|++..|+..+.|.+||||++|++||+++|+-
T Consensus       202 i~s~g~~~~~~~~p~vyt~v~~~~~WI~~~~~~  234 (235)
T d1rfna_         202 IISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL  234 (235)
T ss_dssp             EEEEESSSSCTTCCEEEEEGGGTHHHHHHHHCC
T ss_pred             EEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhcC
Confidence            999999999888999999999999999999974

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.7e-32  Score=208.19  Aligned_cols=190  Identities=28%  Similarity=0.550  Sum_probs=154.2

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      +.+...|++|........+....+.+.|.++++||+|+.......+|||||+|.+|+.+++.++|+|++...... .+..
T Consensus        39 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~hp~~~~~~~~~~~diAll~l~~~~~~~~~~~pic~~~~~~~~~~~~~  118 (232)
T d1fona_          39 TSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAP  118 (232)
T ss_dssp             TTSCEEEEEEEEETTEEEEEEEEEEECTTSEEECTTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTCC
T ss_pred             CCCceEEEEEeccccccccccccccceeEEEEEccCccccccccccceeeeecccceEEeecceeeecCcccccCCCCce
Confidence            455677888887776654433456778999999999985555667999999999999999999999999876544 4678


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee-CCcE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER-TGRW  163 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~-~~~~  163 (203)
                      +.+.||+........ +..++...+.+++.+.|.+.....   ..+.+.++|+..  .....|.+|+||||++.. +++|
T Consensus       119 ~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~c~~~--~~~~~~~gdsGgpl~~~~~~~~~  192 (232)
T d1fona_         119 CYISGWGRLYTGGPL-PDKLQQALLPTVDYEHCSQWDWWG---ITVKKTMVCAGG--DTRSGCNGDSGGPLNCPAADGSW  192 (232)
T ss_dssp             CEEEECTTCCCSSSC-CSBCEEEECCEECHHHHTSTTTTG---GGCCTTEEEECC--SSSCSTTSCTTCEEEEECSSSCE
T ss_pred             eEeeccccccCCCCC-CCcceEEEEEEEcHHHhhhhhccC---ceeeeceeeecc--ccccccccCCCCceEEEccCCCE
Confidence            899999987665543 678999999999999998755432   247788899874  346789999999999864 6799


Q ss_pred             EEEEEEEecC--CCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        164 FLIGIVSAGY--SCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       164 ~lvGv~s~~~--~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +|+||+|++.  .|+..+.|++||||++|++||+++|+.+
T Consensus       193 ~L~Gi~s~~~~~~c~~~~~p~vyt~V~~y~~WI~~~i~~~  232 (232)
T d1fona_         193 QVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIASN  232 (232)
T ss_dssp             EEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHHHHC
T ss_pred             EEEEEEEEcCCCCCCCCCCCEEEEEHHHHHHHHHHHHHcC
Confidence            9999999975  4777788999999999999999999864

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=2.4e-32  Score=206.46  Aligned_cols=175  Identities=29%  Similarity=0.526  Sum_probs=149.3

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGW   86 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~   86 (203)
                      .++.|++|........+.  .+...|.++++||+|+  .....+|||||+|++|+.|++.++|+||+...... .+..+.
T Consensus        49 ~~~~v~~g~~~~~~~~~~--~~~~~v~~~~~~~~~~--~~~~~~diall~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~  124 (224)
T d3rp2a_          49 REITVILGAHDVRKREST--QQKIKVEKQIIHESYN--SVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCW  124 (224)
T ss_dssp             SEEEEEESCSBTTSCCTT--CEEEEEEEEEECTTCC--SSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEE
T ss_pred             cccEEEeccccccCcccc--ceeeeEEEEEeccccc--ccccccceeeeeecceeEeccccceEEecccccccCCCcEEE
Confidence            468899999888776664  8899999999999997  57889999999999999999999999998876544 578899


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      +.||+........ ...|+...+++++.+.|...+..      ....++|+.........|.+|+||||+++    ++|+
T Consensus       125 ~~g~~~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~------~~~~~~~~~~~~~~~~~c~~d~G~Pl~~~----~~l~  193 (224)
T d3rp2a_         125 AAGWGKTGVRDPT-SYTLREVELRIMDEKACVDYRYY------EYKFQVCVGSPTTLRAAFMGDSGGPLLCA----GVAH  193 (224)
T ss_dssp             EEESSEEETTEEE-CSBCEEEEEEEECGGGTTTTTCC------CTTTEEEECCTTSCCBCCTTTTTCEEEET----TEEE
T ss_pred             EeeeeeeecCCCc-cceeeEEEEEccCHHHhhhcccc------cccceeeeccCcccccCcCCCcCCeEEEc----CEEE
Confidence            9999987766543 56799999999999999876543      56778888766667788999999999995    3699


Q ss_pred             EEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        167 GIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       167 Gv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      ||+|++..|+  +.|.+||||++|++||+++|+
T Consensus       194 Gi~S~g~~~~--~~p~vyt~v~~~~~WI~~vi~  224 (224)
T d3rp2a_         194 GIVSYGHPDA--KPPAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             EEEEECCTTC--CSCEEEEEHHHHHHHHHHHHC
T ss_pred             EEEEECCCCC--CCCeEEEEHHHHHHHHHHHhC
Confidence            9999997775  459999999999999999985

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=100.00  E-value=1.1e-31  Score=203.23  Aligned_cols=164  Identities=34%  Similarity=0.653  Sum_probs=143.7

Q ss_pred             CceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceE
Q psy12782         27 PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQA  106 (203)
Q Consensus        27 ~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~  106 (203)
                      ..+.+.+..++.||.|.  .....+||||++|+.++.++++++|||||..... ....+.++|||............|+.
T Consensus        65 ~~~~~~~~~~~~~~~~~--~~~~~~diAl~~l~~~~~~~~~~~picL~~~~~~-~~~~~~~~gwg~~~~~~~~~~~~l~~  141 (228)
T d1fxya_          65 GEAVHEVEVVIKHNRFT--KETYDFDIAVLRLKTPITFRMNVAPASLPTAPPA-TGTKCLISGWGNTASSGADYPDELQC  141 (228)
T ss_dssp             CEEEEEEEEEEECTTCB--TTTTBTCCEEEEESSCCCCBTTBCCCCCCSSCCC-TTCEEEEEESSCCCSSSCCCCSSCEE
T ss_pred             cceeeeeeccceeeeee--ccccccceeehhcccccccccccccccccccccc-cccEEEEEecccccCCCCCCCchhEE
Confidence            47778889999999987  5678899999999999999999999999988754 57889999999887665555678999


Q ss_pred             EEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEe
Q psy12782        107 VDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR  186 (203)
Q Consensus       107 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~  186 (203)
                      ..+.+++.+.|+..+...     +.+.++|+.........|.+|+||||+++.    +|+||+|++..|+..+.|.+|||
T Consensus       142 ~~~~~~~~~~C~~~~~~~-----~~~~~~c~~~~~~~~~~~~gd~G~Pl~~~~----~l~Gi~s~g~~~~~~~~p~vft~  212 (228)
T d1fxya_         142 LDAPVLSQAKCEASYPGK-----ITSNMFCVGFLEGGKDSCQGDSGGPVVCNG----QLQGVVSWGDGCAQKNKPGVYTK  212 (228)
T ss_dssp             EEEEBCCHHHHHHHSTTT-----CCTTEEEESCTTCSCBCCTTCTTCEEEETT----EEEEEEEECSSSSBTTBCEEEEE
T ss_pred             EEEEEeCHHHHhhhcCCc-----ccceeeEeecCCCCcccccCccCccEEEeC----EEEEEEEECCCCCCCCCCEEEEE
Confidence            999999999999877653     778889987766778899999999999964    59999999999988888999999


Q ss_pred             CCCCHHHHHHhhcccC
Q psy12782        187 VAYTVDWISYIMNTAT  202 (203)
Q Consensus       187 v~~~~~WI~~~i~~~~  202 (203)
                      |++|++||+++|+.++
T Consensus       213 v~~~~~WI~~~i~~~~  228 (228)
T d1fxya_         213 VYNYVKWIKNTIAANS  228 (228)
T ss_dssp             GGGGHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999999764

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-31  Score=203.12  Aligned_cols=180  Identities=32%  Similarity=0.573  Sum_probs=147.0

Q ss_pred             EEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeEEee
Q psy12782         11 QVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGWAAG   89 (203)
Q Consensus        11 ~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~~~G   89 (203)
                      .+.++..+......  ..+...+..++.||+|+  ..+..||||||+|.+|+.++..++|+|+|...... .+..+.++|
T Consensus        49 ~~~~~~~~~~~~~~--~~~~~~~~~i~~hp~y~--~~~~~~diAll~l~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g  124 (232)
T d1orfa_          49 QVILGAHSITREEP--TKQIMLVKKEFPYPCYD--PATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAG  124 (232)
T ss_dssp             EEEESCSBSSSCCT--TCEEECEEEEEECTTCC--TTTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEE
T ss_pred             ceeeeeeecccccc--ccccceEEEEEeccccc--ccccCcceeEeeeccceeeeeeEeeeeecccccccccCceeeecc
Confidence            44555555444333  47888999999999997  57789999999999999999999999999876654 578899999


Q ss_pred             cccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEE
Q psy12782         90 WGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIV  169 (203)
Q Consensus        90 wg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~  169 (203)
                      ||........ +..|+.+.+.+++.++|....... ....+.++++|++........|.+|+||||+++.    +|+||+
T Consensus       125 ~g~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~~-~~~~~~~~~~C~~~~~~~~~~c~gdsG~Pl~~~~----~l~GI~  198 (232)
T d1orfa_         125 WGRTHNSASW-SDTLREVEITIIDRKVCNDRNHYN-FNPVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEG----VFRGVT  198 (232)
T ss_dssp             SSCSSSSSCC-CSBCEEEEEEEECHHHHTSTTTTT-TTTCCCTTEEEEECSSCCCBCCTTCTTCEEEETT----EEEEEE
T ss_pred             ccccCCcccC-ChhheEEEeecCCHHHHhhhhhcc-cCccccCceEEeccCCCCcccccccCCCeEEEcC----EEEEEE
Confidence            9987766543 678999999999999997654322 1234788999998777778899999999999964    699999


Q ss_pred             EecC--CCCCCCCCeEEEeCC-CCHHHHHHhhcc
Q psy12782        170 SAGY--SCAQQGQPGIYHRVA-YTVDWISYIMNT  200 (203)
Q Consensus       170 s~~~--~c~~~~~~~v~t~v~-~~~~WI~~~i~~  200 (203)
                      |++.  .|+..+.|++||||+ +|++||+++|+.
T Consensus       199 S~g~~~~c~~~~~p~vyt~Vs~~y~~WI~~~i~g  232 (232)
T d1orfa_         199 SFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKG  232 (232)
T ss_dssp             EECCTTCTTCTTSCEEEEECCHHHHHHHHHHHCC
T ss_pred             EEECCCCCCCCCCCcEEEEeeHHHHHHHHHHhCC
Confidence            9975  477778899999997 799999999873

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=100.00  E-value=2.2e-31  Score=200.80  Aligned_cols=176  Identities=33%  Similarity=0.550  Sum_probs=145.8

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      +.....|+++......     ..+.+.+..++.||.|.    ...+|||||+|++|+.+++.+.|+|++...... .+..
T Consensus        47 ~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~h~~~~----~~~~DiAll~L~~~v~~~~~~~~i~~~~~~~~~~~~~~  117 (224)
T d1gdna_          47 AQSGFQIRAGSLSRTS-----GGITSSLSSVRVHPSYS----GNNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSS  117 (224)
T ss_dssp             CGGGEEEEESCSBSSS-----SSEEEEEEEEEECTTCB----TTBSCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCE
T ss_pred             cccccceeeccccccC-----CcceEEEEEEEeeeccc----cccceeEEEeeccccccccccceeecccccccccccee
Confidence            3445566666655443     37788899999999885    457899999999999999999999999776543 5789


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      +.++|||....+.......|+...+++++.++|+..+...    .+.+.++|+.........|.+|+||||++   ++|+
T Consensus       118 ~~~~g~g~~~~~~~~~~~~l~~~~v~~i~~~~C~~~~~~~----~~~~~~~~~~~~~~~~~~c~~dsG~pl~~---~~~~  190 (224)
T d1gdna_         118 ATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTS----AITNQMFCAGVSSGGKDSCQGDSGGPIVD---SSNT  190 (224)
T ss_dssp             EEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTT----TSCTTEEEECCTTCCCBCCTTCTTCEEEC---TTCC
T ss_pred             eeeeccCccccCCCcCCCEeeeeEEEEeCHHHHhcccccC----ccccceeeeecCCCCccccccccCCceEe---cCCE
Confidence            9999999887665555678999999999999999887654    46778888876666678999999999996   3458


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHh
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYI  197 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~  197 (203)
                      |+||+|++..|+..+.|.+||||++|++||++.
T Consensus       191 l~GI~S~g~~c~~~~~p~vyt~v~~y~~WIe~~  223 (224)
T d1gdna_         191 LIGAVSWGNGCARPNYSGVYASVGALRSFIDTY  223 (224)
T ss_dssp             EEEEEEECSSSSCTTCCEEEEETTTTHHHHHHH
T ss_pred             EEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHC
Confidence            999999999999889999999999999999864

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=1.5e-31  Score=201.76  Aligned_cols=160  Identities=32%  Similarity=0.659  Sum_probs=139.9

Q ss_pred             ceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEE
Q psy12782         28 AYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAV  107 (203)
Q Consensus        28 ~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~  107 (203)
                      .....+.+++.||.|+  .....+|||||+|++|+.+++.+.|||||.... ..+..+.+.||+........ ...|+..
T Consensus        62 ~~~~~~~~~~~~~~~~--~~~~~~diALl~l~~~v~~~~~~~picl~~~~~-~~~~~~~~~g~~~~~~~~~~-~~~l~~~  137 (222)
T d1hj8a_          62 EQFISSSRVIRHPNYS--SYNIDNDIMLIKLSKPATLNTYVQPVALPTSCA-PAGTMCTVSGWGNTMSSTAD-SNKLQCL  137 (222)
T ss_dssp             CEEEEEEEEEECTTCB--TTTTBSCCEEEEESSCCCCSSSCCCCBCCSSCC-CTTCEEEEEESSCCCCSSCC-TTBCEEE
T ss_pred             cccccceEEEeccccc--ccccCCcEEEEecccceeeeceeEEEECCCcCC-CCCceEEEEecccccccccc-ccccEEE
Confidence            5667788899999886  567789999999999999999999999998765 35888999999987665543 6778999


Q ss_pred             EEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeC
Q psy12782        108 DVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV  187 (203)
Q Consensus       108 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v  187 (203)
                      .+.+++.++|+..++..     +.+.++|++........|.||+||||+++.    +|+||+|++..|+..+.|.+||||
T Consensus       138 ~~~~~~~~~C~~~~~~~-----~~~~~~C~~~~~~~~~~c~gdsGgPl~~~~----~l~Gi~S~g~~~~~~~~p~v~t~v  208 (222)
T d1hj8a_         138 NIPILSYSDCNNSYPGM-----ITNAMFCAGYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEPGNPGVYAKV  208 (222)
T ss_dssp             EEEBCCHHHHHHHSTTC-----CCTTEEEESCTTSSCBCCTTCTTCEEEETT----EEEEEEEECSSSSCTTCCEEEEEG
T ss_pred             EEEEeCHHHHhhhcccc-----cccceEEEccCCCCcccccCCcccEEEECC----EEEEEEEEecCCCCCCCCEEEEEH
Confidence            99999999999987653     789999998777667899999999999964    499999999999888899999999


Q ss_pred             CCCHHHHHHhhcc
Q psy12782        188 AYTVDWISYIMNT  200 (203)
Q Consensus       188 ~~~~~WI~~~i~~  200 (203)
                      ++|++||+++|+.
T Consensus       209 ~~y~~WI~~~i~~  221 (222)
T d1hj8a_         209 CIFNDWLTSTMAS  221 (222)
T ss_dssp             GGGHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999975

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.98  E-value=3.6e-31  Score=201.24  Aligned_cols=187  Identities=31%  Similarity=0.573  Sum_probs=151.9

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGW   86 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~   86 (203)
                      +...|+++.......+.  ..+.+.|.++++||.|+.......+|||||+|..++.++..++|+|++...... .+..+.
T Consensus        51 ~~~~v~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~d~~iall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~  128 (241)
T d1brup_          51 RTYRVVLGRHSLSTNEP--GSLAVKVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCY  128 (241)
T ss_dssp             SCEEEEESCSBSSSCCT--TCEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEE
T ss_pred             cccceeeeccceeccCC--CccccceeeeEEEeeeeeccccCCceEEEEecccccccccceeeeeeccccccCCCceeEE
Confidence            34556666655555444  378899999999999997667778899999999999999999999998876544 578899


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEe-eCCcEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME-RTGRWFL  165 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~-~~~~~~l  165 (203)
                      +.|||........ ...++...+.+++.+.|++.....   ......++|+.. ......|.||+||||++. .+++|+|
T Consensus       129 ~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~C~~~~~~~---~~~~~~~~~~~~-~~~~~~C~gdsGgPl~~~~~~~~~~L  203 (241)
T d1brup_         129 VTGWGRLQTNGAS-PDILQQGQLLVVDYATCSKPGWWG---STVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQV  203 (241)
T ss_dssp             EEESCCSSTTSCC-CSBCEEEEEEEECHHHHTSTTTTG---GGCCTTEEEECC-SSSSBCCTTCTTCEEEEECTTSCEEE
T ss_pred             EEeeeccCCCCcC-CCcceEEEEEEeCHHHhCcccccc---ccccccceeecC-CCCccccCCCcccceEEEcCCCCEEE
Confidence            9999987765543 567999999999999998765432   235667777764 345789999999999987 4679999


Q ss_pred             EEEEEecCC--CCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        166 IGIVSAGYS--CAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       166 vGv~s~~~~--c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +||+|++..  |+..+.|.+||||++|++||+++|+.+
T Consensus       204 ~Gi~S~g~~~~c~~~~~p~vyt~v~~~~~WI~~~i~~~  241 (241)
T d1brup_         204 HGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIANN  241 (241)
T ss_dssp             EEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHHC
T ss_pred             EEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHhcC
Confidence            999999875  667788999999999999999999864

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=2.1e-31  Score=201.04  Aligned_cols=175  Identities=30%  Similarity=0.483  Sum_probs=145.6

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeEE
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGWA   87 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~~   87 (203)
                      ...+++|........+.  .+.+.|.++++||+|+  .....||||||+|++|+.|++.+.|+|++...... .+..+.+
T Consensus        49 ~~~~~~~~~~~~~~~~~--~~~~~V~~i~~hp~~~--~~~~~~DiAll~L~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  124 (224)
T d1eufa_          49 SINVTLGAHNIMERERT--QQVIPVRRPIPHPDYN--DETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSV  124 (224)
T ss_dssp             EEEEEESCSBTTSCCTT--CEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEE
T ss_pred             ccceeeeeeeecccCCC--cEEEEEEEEEECCccc--cccccccceeeeccceeEEeeeEeeeeeecccccccCCceEEE
Confidence            34577777777665554  8899999999999997  57788999999999999999999999999887654 5778999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||........ ...++...+.+++.++|.......     ....++|..........|.+|+||||+++.    +|+|
T Consensus       125 ~g~g~~~~~~~~-~~~~~~~~~~~~~~~~C~~~~~~~-----~~~~~~~~~~~~~~~~~c~~dsGgpl~~~~----~l~G  194 (224)
T d1eufa_         125 AGWGRLGVNMPS-TDKLQEVDLEVQSEEKCIARFKNY-----IPFTQICAGDPSKRKNSFSGDSGGPLVCNG----VAQG  194 (224)
T ss_dssp             EESCBSSTTCCB-CSBCEEEEEEBCCTHHHHTTCTTC-----CTTTEEEESCTTSCCBCCTTCTTCEEEETT----EEEE
T ss_pred             ecccceeccccc-cccceeeeeccCCHHHHHHHhccc-----cccceeeeeccccccccccCCCCCeEEEcC----EEEE
Confidence            999987766543 667899999999999999876643     455666665555667899999999999964    6999


Q ss_pred             EEEecCCCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        168 IVSAGYSCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       168 v~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      |+|++..|+  +.|.+||||++|++||+++|+
T Consensus       195 i~s~g~~~~--~~p~vft~V~~y~~WI~~~ik  224 (224)
T d1eufa_         195 IVSYGRNDG--TTPDVYTRISSFLSWIHSTMR  224 (224)
T ss_dssp             EEEECCTTC--CSCEEEEEGGGTHHHHHHHTC
T ss_pred             EEEEcCCCC--CCCeEEEEHHHHHHHHHHHhC
Confidence            999998875  459999999999999999985

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=1.4e-31  Score=205.32  Aligned_cols=166  Identities=31%  Similarity=0.583  Sum_probs=141.6

Q ss_pred             CceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeEEeecccccCCCCCCccCce
Q psy12782         27 PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQ  105 (203)
Q Consensus        27 ~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~~~Gwg~~~~~~~~~~~~l~  105 (203)
                      ..+...|.++++||.|+  .....|||||++|.+|+.|++.++|+||+...... .+..+.+.||+.....+.. ...++
T Consensus        82 ~~~~~~v~~i~~h~~y~--~~~~~~diali~l~~pi~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~  158 (251)
T d1pytd_          82 GSLYVGVDTIFVHEKWN--SFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPI-AAELQ  158 (251)
T ss_dssp             SCEEEEEEEEEECTTCB--TTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCC-CSBCB
T ss_pred             CceEEeEEEEEEeeeec--ccccCCceeeeecCCCcccCceeEEEEeeccccCCCCceeEEEecCccccCCCcc-cceec
Confidence            47889999999999997  56788999999999999999999999999887644 5778999999988766543 55677


Q ss_pred             EEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecC--CCCCCCCCeE
Q psy12782        106 AVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGY--SCAQQGQPGI  183 (203)
Q Consensus       106 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~--~c~~~~~~~v  183 (203)
                      ...+.+++.++|...+...   ......++|+... .....|.+|+||||++.++++|+|+||+|++.  .|+..+.|.+
T Consensus       159 ~~~~~~~~~~~C~~~~~~~---~~~~~~~~c~~~~-~~~~~c~gd~G~Pl~~~~~~~~~L~Gi~S~~~~~~c~~~~~p~v  234 (251)
T d1pytd_         159 QGLQPVVDYATCSQRDWWG---TTVKETMVCAGGD-GVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTV  234 (251)
T ss_dssp             CCEEECBCHHHHTSTTTTT---TTCCTTEEEECCS-CSSCCCCSCTTCEEEEESSSSEEEEEEEEECCSSCTTBTTBCEE
T ss_pred             eeeccccCHHHHhhhhccc---ccccCceEEeccC-CCCccccCCCCCceEEeeCCEEEEEEEEEECCCCCCCCCCCCeE
Confidence            8888999999998755432   2467889999754 34689999999999999999999999999976  4777788999


Q ss_pred             EEeCCCCHHHHHHhhc
Q psy12782        184 YHRVAYTVDWISYIMN  199 (203)
Q Consensus       184 ~t~v~~~~~WI~~~i~  199 (203)
                      |+||++|++||+++|+
T Consensus       235 yt~v~~y~~WI~~~i~  250 (251)
T d1pytd_         235 FTRVSAYIDWINQKLQ  250 (251)
T ss_dssp             EEEGGGGHHHHHHHTT
T ss_pred             EEEHHHhHHHHHHhcc
Confidence            9999999999999986

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=1.7e-31  Score=201.65  Aligned_cols=175  Identities=31%  Similarity=0.593  Sum_probs=142.6

Q ss_pred             EEeeeeeecccCCCCCceEEeeEEEEeCCCCC-CCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeec
Q psy12782         12 VTLGDYVINSAVEPLPAYTFGVRKINVHPYFK-FTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGW   90 (203)
Q Consensus        12 V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~-~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gw   90 (203)
                      +..+.........  ......+..+..||.|+ ++...+.+|||||+|++|+.+++.++|+|+|.... .....+.++||
T Consensus        49 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~dIAll~L~~~~~~~~~~~~i~l~~~~~-~~~~~~~~~g~  125 (225)
T d1npma_          49 VRLGDHSLQSRDQ--PEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCP-KVGQKCIISGW  125 (225)
T ss_dssp             EEESCSBTTC--C--CCEEECEEEEEECTTCCSSCTTCCTTCCEEEEESSCCCCSSSSCCCEECSSCC-CTTCEEEEEES
T ss_pred             cccccccccccCC--CcceeeeeeeEEEEeeeccCcccchhhhhhhhccccccccccccccccccccc-cCCceEEEecc
Confidence            3334433333333  36778888999998775 23566889999999999999999999999998875 45788999999


Q ss_pred             ccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEE
Q psy12782         91 GALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVS  170 (203)
Q Consensus        91 g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s  170 (203)
                      |.........+..|+...+.+++.+.|++.++.     .+.++++|+.... ....|.||+||||+++    |+|+||+|
T Consensus       126 g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~C~~~~~-~~~~c~gd~G~pl~~~----~~l~Gi~S  195 (225)
T d1npma_         126 GTVTSPQENFPNTLNCAEVKIYSQNKCERAYPG-----KITEGMVCAGSSN-GADTCQGDSGGPLVCD----GMLQGITS  195 (225)
T ss_dssp             SCSSSSSCCCCSBCEEEEEEECCHHHHHHHSTT-----TCCTTEEEEECTT-CCBCCTTCTTCEEEET----TEEEEEEE
T ss_pred             ceecCCCCCCCCccEEEEEEEecHHHHhhhccC-----CcCCCEEEecCCC-CCccccCCCCceEEEc----cEEEEEEE
Confidence            987665554567899999999999999988765     3789999998654 4788999999999994    47999999


Q ss_pred             ecCC-CCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        171 AGYS-CAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       171 ~~~~-c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      ++.. |+..+.|++||||++|.+||+++|+
T Consensus       196 ~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~  225 (225)
T d1npma_         196 WGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             ECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             ECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            9865 7777889999999999999999985

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=99.98  E-value=1.4e-31  Score=202.39  Aligned_cols=179  Identities=31%  Similarity=0.507  Sum_probs=148.6

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCcee
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFG   85 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~   85 (203)
                      ......+++|..........  .+.+.|.++++||.|+  .....+|||||+|++|+.++..+.|+|++.... .....+
T Consensus        45 ~~~~~~~~~g~~~~~~~~~~--~~~~~v~~i~~~~~y~--~~~~~~diAll~l~~~~~~~~~~~pi~l~~~~~-~~~~~~  119 (226)
T d1azza_          45 GAGFVDVVLGAHNIREDEAT--QVTIQSTDFTVHENYN--SFVISNDIAVIRLPVPVTLTAAIATVGLPSTDV-GVGTVV  119 (226)
T ss_dssp             TCSCEEEEESCSBSSSCCTT--CEEEEECCEEECTTCB--TTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCC-CTTCEE
T ss_pred             CCcceEEEeccceeccCCcc--eEEEEeeeeeeccccc--cccccchhhhhhcCCccceeecccccccccccc-ccccce
Confidence            34567788888887765554  8889999999999997  577889999999999999999999999999875 457889


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFL  165 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~l  165 (203)
                      .++|||............|+...+++++.++|...+..      ..+.++|... ......|.+|+||||+++.    +|
T Consensus       120 ~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~------~~~~~~~~~~-~~~~~~c~gdsG~Pl~~~~----~l  188 (226)
T d1azza_         120 TPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVYGI------VTDGNICIDS-TGGKGTCNGDSGGPLNYNG----LT  188 (226)
T ss_dssp             EEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHHSC------CCTTEEEECC-TTTCBCCTTCTTCEEEETT----EE
T ss_pred             eeecccccCCCcCccccEeEEEEEEEEeHHHhhhhhCc------ccccceeccc-cCCCccccCCcCCCEEEcC----EE
Confidence            99999988766554567899999999999999998764      3444444433 3457889999999999853    69


Q ss_pred             EEEEEecCCCC-CCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        166 IGIVSAGYSCA-QQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       166 vGv~s~~~~c~-~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      +||+|++..|+ ..+.|++||||++|++||+++|+.
T Consensus       189 ~Gi~S~g~~~~~~~~~p~v~t~v~~y~~WI~~~~g~  224 (226)
T d1azza_         189 YGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTGI  224 (226)
T ss_dssp             EEEEEEEETTCTTSCCCEEEEESGGGHHHHHHHHCC
T ss_pred             EEEEEEeCCCCCCCCCCEEEEEHHHhHHHHHHHhCC
Confidence            99999988753 667899999999999999999975

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=3.9e-31  Score=201.09  Aligned_cols=182  Identities=32%  Similarity=0.542  Sum_probs=152.2

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCC---------CCCCCCCeEEEEECCCcCCCCCccceecCCCCCC
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFT---------PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED   79 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~---------~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~   79 (203)
                      ...|++|..........  .+.+.+.+++.||.|+..         ...+.+|||||||++|+.+++.+.|+|||.....
T Consensus        46 ~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiAll~L~~~i~~~~~~~~i~lp~~~~~  123 (237)
T d1ao5a_          46 QYEVWLGKNKLFQEEPS--AQHRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPK  123 (237)
T ss_dssp             SCEEEESCCBSSSCCSS--CEECCEEEEEECTTSCGGGGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCCC
T ss_pred             CceEEEEeccccccccc--cEEEEEEEEeecccccccccccccccCccccccceeeeccCcccccccccceeccCCCCCc
Confidence            45788888887765554  888999999999998732         2335689999999999999999999999988754


Q ss_pred             ccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEee
Q psy12782         80 FLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMER  159 (203)
Q Consensus        80 ~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~  159 (203)
                       ....+.++||+............+....+..++...|.......     +.+.++|+.........|.||+||||+++ 
T Consensus       124 -~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~-----~~~~~~~~~~~~~~~~~c~gdsG~pl~~~-  196 (237)
T d1ao5a_         124 -PGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAKVYLQK-----VTDVMLCAGEMGGGKDTCRDDSGGPLICD-  196 (237)
T ss_dssp             -TTCEEEEEESCCSSCC-CCCCSBCEEEEEEEECHHHHHHHCSSC-----CCTTEEEEECTTCSCBCCTTCTTCEEEET-
T ss_pred             -ccceEEEeeeeeeccccccCCccceeeEEEEEehHHhhhhhcCC-----CCCCeEEEccCCCCCcccCCCCCCeeEEc-
Confidence             57889999999776555444677889999999999999887754     77889988766666789999999999995 


Q ss_pred             CCcEEEEEEEEecC-CCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        160 TGRWFLIGIVSAGY-SCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       160 ~~~~~lvGv~s~~~-~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                         ++|+||+|++. .|+..+.|.+||||+.|++||+++|++++
T Consensus       197 ---~~l~Gi~S~g~~~c~~~~~p~vft~V~~y~~WI~~~i~~n~  237 (237)
T d1ao5a_         197 ---GILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMKNA  237 (237)
T ss_dssp             ---TEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHHHCC
T ss_pred             ---cEEEEEEEEecCCCCCCCCCeEEEEHHHHHHHHHHHHHhcC
Confidence               36999999986 48777889999999999999999998864

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.8e-31  Score=202.06  Aligned_cols=192  Identities=32%  Similarity=0.638  Sum_probs=152.9

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCC----c
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGED----F   80 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~----~   80 (203)
                      .....+.|.++....+.....  .+...+..++.|+.|+  .....+|||||||++|+.++..++|+|||.....    .
T Consensus        47 ~~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~DiAll~L~~~v~~~~~i~picl~~~~~~~~~~~  122 (254)
T d2bz6h1          47 KNWRNLIAVLGEHDLSEHDGD--EQSRRVAQVIIPSTYV--PGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLA  122 (254)
T ss_dssp             SCGGGEEEEESCCBTTCCCSC--CEEEEEEEEEEETTCC--TTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGG
T ss_pred             CCcccceeeccceeecccccc--ceeeeeeeeeeccccc--ccccccceeEEEecCcccccceEeeeecCcccccccccc
Confidence            345667888888887765553  7888899999999987  5778899999999999999999999999875332    1


Q ss_pred             cCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeC
Q psy12782         81 LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERT  160 (203)
Q Consensus        81 ~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~  160 (203)
                      ....+.+.|||........ ....+.....+...+.|................++|..........|.||+||||++..+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgPl~~~~~  201 (254)
T d2bz6h1         123 FVRFSLVSGWGQLLDRGAT-ALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYR  201 (254)
T ss_dssp             GCCEEEEEESCBSSTTSCB-CSBCEEEEEEEECHHHHHHHSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEET
T ss_pred             CCceEEEeccCccCCCCcc-cccceeeeecccchhhhhhhhhcccccccccccceeeeccCCCcccccCccccceEEccC
Confidence            4678899999988766543 444555556666666555443333233345677777766666788999999999999999


Q ss_pred             CcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        161 GRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       161 ~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      ++|+|+||+||+..|+..+.|++||||+.|++||+++|+.+
T Consensus       202 ~~~~lvGi~S~g~~c~~~~~p~vytrv~~~~~WI~~~i~~~  242 (254)
T d2bz6h1         202 GTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMRSE  242 (254)
T ss_dssp             TEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHTSC
T ss_pred             CeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhhC
Confidence            99999999999999998899999999999999999999864

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-31  Score=200.74  Aligned_cols=177  Identities=27%  Similarity=0.425  Sum_probs=147.2

Q ss_pred             ceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeE
Q psy12782          8 RQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGW   86 (203)
Q Consensus         8 ~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~   86 (203)
                      ..+.|++|.++++...+.  .+...+.+++.||.|+  ..+..+|||||+|..|+.++..+.|+|++...... .+..+.
T Consensus        47 ~~~~v~~g~~~~~~~~~~--~~~~~~~~~~~~p~~~--~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~  122 (224)
T d1nn6a_          47 RSITVTLGAHNITEEEDT--WQKLEVIKQFRHPKYN--TSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCR  122 (224)
T ss_dssp             SEEEEEESCSBTTSCCTT--CEEEEEEEEEECTTCC--TTTCTTCCEEEEESSCCCCCSSCCCCCCCSCCCCCCTTCEEE
T ss_pred             ccceEEeccccccccccc--ccceeEEEEEEeeccc--ccccccchhhhcccCCcccccccccccccccccccCCCceee
Confidence            357899999998887665  8999999999999997  56788999999999999999999999998876544 578899


Q ss_pred             EeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEE
Q psy12782         87 AAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLI  166 (203)
Q Consensus        87 ~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lv  166 (203)
                      ..||+........ ...++...+.+++.++|...+..      .....+|+.........|.||+||||++.    |+|+
T Consensus       123 ~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~~~~------~~~~~~~~~~~~~~~~~c~gDsG~PL~~~----~~l~  191 (224)
T d1nn6a_         123 VAGWGRTGVLKPG-SDTLQEVKLRLMDPQACSHFRDF------DHNLQLCVGNPRKTKSAFKGDSGGPLLCA----GVAQ  191 (224)
T ss_dssp             EEECCCCSSSCCC-CSBCEEEEEEBCCGGGGTTSTTC------CTTTEEEECCTTTC--CCCCCTTCEEEET----TEEE
T ss_pred             eccccccccCCCc-cccceEEEEEecCHHHHhhhccc------ccceeeeccCccccccccCCCccceEEEC----CEEE
Confidence            9999876655443 67799999999999999876653      45667777655555789999999999995    3699


Q ss_pred             EEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        167 GIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       167 Gv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      ||+|++..|+  +.|.+||||+.|++||+++|+.|
T Consensus       192 GI~s~g~~~~--~~p~vyt~v~~y~~WI~~~i~~n  224 (224)
T d1nn6a_         192 GIVSYGRSDA--KPPAVFTRISHYRPWINQILQAN  224 (224)
T ss_dssp             EEEEECCTTC--CSCEEEEEHHHHHHHHHHHHHTC
T ss_pred             EEEEECCCCC--CCCeEEEEHHHHHHHHHHHHhcC
Confidence            9999997665  45999999999999999999764

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=99.97  E-value=5e-31  Score=198.39  Aligned_cols=159  Identities=31%  Similarity=0.583  Sum_probs=137.9

Q ss_pred             CceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceE
Q psy12782         27 PAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQA  106 (203)
Q Consensus        27 ~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~  106 (203)
                      +.+...|.++++||+|+  .....+|||||+|++|+.+++.++|+||+..........+.++||+........ ...++.
T Consensus        64 ~~~~~~v~~~~~h~~y~--~~~~~~diAll~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~  140 (222)
T d1eq9a_          64 SGDVYDVEDAVVNKNYD--DFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNT-PNALQE  140 (222)
T ss_dssp             CCEEEEEEEEEECTTCB--TTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTCCC-CSBCEE
T ss_pred             CcceeeeeeEEEeeccc--ccccccceehhhccCCcccccccccccccccccccccceeEEeeeeeecCCCCC-CccceE
Confidence            37789999999999997  567889999999999999999999999998877667888999999977665543 678999


Q ss_pred             EEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEe
Q psy12782        107 VDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR  186 (203)
Q Consensus       107 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~  186 (203)
                      ..+..++...|.....      ...+.++|+.... ....|.+|+||||+++    |+|+||+|++..|+. +.|.+|||
T Consensus       141 ~~~~~~~~~~c~~~~~------~~~~~~~c~~~~~-~~~~c~~d~G~pl~~~----~~L~GI~s~~~~c~~-~~p~vyt~  208 (222)
T d1eq9a_         141 IELIVHPQKQCERDQW------RVIDSHICTLTKR-GEGACHGDSGGPLVAN----GAQIGIVSFGSPCAL-GEPDVYTR  208 (222)
T ss_dssp             EEEEEECHHHHHHHSS------SCCTTEEEECCCT-TCBCCTTCTTCEEEET----TEEEEEEEECSTTTS-SSCEEEEE
T ss_pred             EEEEEechHHhccccc------cccCcceEeccCC-CCCccccCCcCCEEEc----CEEEEEEEECCCCCC-CCCcEEEE
Confidence            9999999999988655      3678899997653 4689999999999995    369999999998865 67999999


Q ss_pred             CCCCHHHHHHhhcc
Q psy12782        187 VAYTVDWISYIMNT  200 (203)
Q Consensus       187 v~~~~~WI~~~i~~  200 (203)
                      |++|++||+++|++
T Consensus       209 v~~y~~WI~~~i~~  222 (222)
T d1eq9a_         209 VSSFVSWINANLKK  222 (222)
T ss_dssp             GGGGHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999874

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-32  Score=207.86  Aligned_cols=177  Identities=29%  Similarity=0.451  Sum_probs=147.7

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeEE
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGWA   87 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~~   87 (203)
                      .+.|++|..........  .+.+.|.++++||.|+  .....||||||+|++|+.|+++++|+||+...... .+..+.+
T Consensus        49 ~~~v~~g~~~~~~~~~~--~~~~~v~~i~~~~~~~--~~~~~~DiAll~L~~~i~~~~~v~~~~l~~~~~~~~~~~~~~~  124 (227)
T d1fq3a_          49 SINVTLGAHNIKEQEPT--QQFIPVKRPIPHPAYN--PKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSV  124 (227)
T ss_dssp             EEEEEESCSBTTTTCTT--CEEEEEEEECCCTTCC--TTTTTTCCEEEEESSCCCCCSSCCCCCCCCSSCCCCTTCEEEC
T ss_pred             cccceeccccccccccc--cEEEEEEEEEecccCC--CCCCCcchhhhhcccccccceeEEEEeecccccccCCCCEEEE
Confidence            46788998887765554  7889999999999997  56788999999999999999999999998876654 5778999


Q ss_pred             eecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEE
Q psy12782         88 AGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIG  167 (203)
Q Consensus        88 ~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvG  167 (203)
                      +|||........ ...++..++.+++.+.|+..+...    ......+|..........|.+|+||||+++.    +|+|
T Consensus       125 ~G~~~~~~~~~~-~~~l~~~~~~~~~~~~C~~~~~~~----~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~~----~l~G  195 (227)
T d1fq3a_         125 AGWGQTAPLGKH-SHTLQEVKMTVQEDRKCESDLRHY----YDSTIELCVGDPEIKKTSFKGDSGGPLVCNK----VAQG  195 (227)
T ss_dssp             CCSCCSTTTSCC-CSBCCBCEEECCCHHHHTTTCTTT----CCTTTEECCSCTTSSCBCCTTCTTCBCBSSS----SCCC
T ss_pred             EeeccccCcccc-cccceEEEEEEEcHHHhhhhhccc----ccccceeeeeccccccccccCCCCceEEEeC----EEEE
Confidence            999987665543 677999999999999998877653    3445556665555667899999999999964    5999


Q ss_pred             EEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        168 IVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       168 v~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      |+|++..|+..  |.+||||++|++||+++|++
T Consensus       196 I~s~g~~~~~~--p~vyt~v~~y~~WI~~~i~~  226 (227)
T d1fq3a_         196 IVSYGRNNGMP--PRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             EECCCCTTSCS--CCCEECHHHHHHHHHHHTTC
T ss_pred             EEEEcCCCCCC--CcEEEEHHHHHHHHHHHHHh
Confidence            99999888753  89999999999999999986

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-30  Score=200.97  Aligned_cols=189  Identities=30%  Similarity=0.596  Sum_probs=143.2

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCC-----CCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKF-----TPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-   80 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~-----~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-   80 (203)
                      .....|++|..+....... +.+.+.|.++++||.|+.     +...+.||||||||.+|+.+++.++|+|++...... 
T Consensus        56 ~~~~~v~~g~~~~~~~~~~-~~~~~~v~~i~~hp~~~~~~~~~~~~~~~~DIAllkL~~~~~~~~~v~pic~~~~~~~~~  134 (259)
T d1elva1          56 NREPTMYVGSTSVQTSRLA-KSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYN  134 (259)
T ss_dssp             CSSCCEECSCSBCC--------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGC
T ss_pred             ccceeEEeeeeeeeccccc-ccccccceeEeecceeecccccccCCCcccceeeeecccceehhcccCceeeccCccccc
Confidence            3445677887766553322 467889999999999963     234577999999999999999999999998766432 


Q ss_pred             --cCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCC----cccccCCeEEeeeeCCCCCCCcCCCCCe
Q psy12782         81 --LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGI----NVVIYDEMMCAGYRGGAKDSCQGDSGGP  154 (203)
Q Consensus        81 --~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~----~~~~~~~~~C~~~~~~~~~~c~~d~G~p  154 (203)
                        .+..+.+.||+.......  ...++...+.+++...|.........    ...+.+.++|+... .....|.+|+|||
T Consensus       135 ~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~c~gDsGgP  211 (259)
T d1elva1         135 LMDGDLGLISGWGRTEKRDR--AVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGE-KGMDSCKGDSGGA  211 (259)
T ss_dssp             CCTTCEEEEEESCCCSSCSS--CSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECS-TTCBCCTTCTTCE
T ss_pred             cccceEEEEecccccccccc--ccccccceeeEechhhceeeeecccccccccceeecceeeccCC-CCCccCCCCcCCe
Confidence              477899999997665543  45688899999999999765432211    11256778888754 4578999999999


Q ss_pred             eEEee---CCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        155 LMMER---TGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       155 l~~~~---~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      |++..   .++|+|+||+|++..|+   .|.+||||++|++||+++|++++
T Consensus       212 l~~~~~~~~~~~~l~Gi~S~~~~c~---~p~vft~V~~~~~WI~~~i~~~~  259 (259)
T d1elva1         212 FAVQDPNDKTKFYAAGLVSWGPQCG---TYGLYTRVKNYVDWIMKTMQENS  259 (259)
T ss_dssp             EEEECSSCTTCEEEEEEEEECSSTT---SEEEEEEGGGGHHHHHHHHHHTC
T ss_pred             EEEEecCCCcEEEEEEEEEeCCCCC---CceEEeEHHHHHHHHHHHHHhcC
Confidence            99875   45899999999998885   38999999999999999998864

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=99.97  E-value=2.5e-30  Score=196.08  Aligned_cols=185  Identities=28%  Similarity=0.536  Sum_probs=149.8

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      ..+...|.+|........+.  ...+.+..+.+||.|++......+|||||+|++|+.++..++|+|||...... ....
T Consensus        49 ~~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~diall~l~~~~~~~~~~~picL~~~~~~~~~~~~  126 (236)
T d1elta_          49 SARTWRVVLGEHNLNTNEGK--EQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNP  126 (236)
T ss_dssp             SCCCEEEEESCSBTTSCCSC--CEEECEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCC
T ss_pred             ccccceeeccceeeecccCC--ceeeeeeEEEEeeeecccccccCceEEEeeccCcceeecccceeecCchhcccCCCce
Confidence            34556788888777766554  78888999999999986655667899999999999999999999999876544 4678


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      +.+.|||........ ...++...+.+++.++|.......   ......++|+.  ......|.+|+||||++..+++|+
T Consensus       127 ~~~~g~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~c~gdsGgpl~~~~~~~~~  200 (236)
T d1elta_         127 CYITGWGKTSTGGPL-SDSLKQAWLPSVDHATCSSSGWWG---STVKTTMVCAG--GGANSGCNGDSGGPLNCQVNGSYY  200 (236)
T ss_dssp             EEEEESCCSSTTCCC-CSBCEEEECCEECHHHHTSTTTTG---GGSCTTEEEEC--CSSCBCCTTCTTCEEEEEETTEEE
T ss_pred             EEEecccccccCccc-CccceeeeeEEEcHHHhhhhcccc---cccceeeeecC--CccccccccccccceEEEECCeEE
Confidence            999999987665443 577889999999999998755432   12445556654  234678999999999999999999


Q ss_pred             EEEEEEecC--CCCCCCCCeEEEeCCCCHHHHHHhh
Q psy12782        165 LIGIVSAGY--SCAQQGQPGIYHRVAYTVDWISYIM  198 (203)
Q Consensus       165 lvGv~s~~~--~c~~~~~~~v~t~v~~~~~WI~~~i  198 (203)
                      |+||+|++.  .|+..+.|.+||||++|++||+++|
T Consensus       201 l~GI~s~~~~~~c~~~~~p~vyt~v~~y~~WI~~vi  236 (236)
T d1elta_         201 VHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             EEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred             EEEEEEEeCCCCCCCCCCCEEEEEHHHHHHHHHHhC
Confidence            999999864  5878788999999999999999986

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=3.8e-30  Score=195.41  Aligned_cols=188  Identities=29%  Similarity=0.537  Sum_probs=153.7

Q ss_pred             CceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCcee
Q psy12782          7 ARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFG   85 (203)
Q Consensus         7 ~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~   85 (203)
                      .....|.+|........+.  .........++|+.|++......+|||||+|..|+.++..++|+||+...... .....
T Consensus        50 ~~~~~v~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~~l~~~~~~~~~~~~~  127 (240)
T d1gvkb_          50 ELTFRVVVGEHNLNQNNGT--EQYVGVQKIVVHPYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPC  127 (240)
T ss_dssp             CCCEEEEESCSBTTSCCSC--CEEEEEEEEEECTTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCCE
T ss_pred             cCCceEEeeeeeccccccc--cccccccceeEEEeecccccccCcceeeecccCcccccccccceeeccCccccccccce
Confidence            4456788899888876664  55666667777777766677889999999999999999999999998876544 46677


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFL  165 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~l  165 (203)
                      .+.||+........ ...++...+.+++...|.......   ....+.++|+... .....|.||+||||++..+++|+|
T Consensus       128 ~~~g~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~c~~~~-~~~~~c~gDsG~pl~~~~~~~~~l  202 (240)
T d1gvkb_         128 YITGWGLTRTNGQL-AQTLQQAYLPTVDYAICSSSSYWG---STVKNSMVCAGGD-GVRSGCQGDSGGPLHCLVNGQYAV  202 (240)
T ss_dssp             EEEESCBSSTTCCB-CSBCEEEECCEECHHHHTSTTTTG---GGCCTTEEEECCS-SSCBCCTTCTTCEEEEEETTEEEE
T ss_pred             eEeccccccccccc-cceeeEEEEEEEcHHHhcceeccC---CccCCceEEecCC-CCCccccCccccceEEEECCEEEE
Confidence            88899877665543 677899999999999987765532   3467889999754 446899999999999999999999


Q ss_pred             EEEEEecCC--CCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        166 IGIVSAGYS--CAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       166 vGv~s~~~~--c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      +||+||+..  |+..+.|.+||||+.|++||+++|+.+
T Consensus       203 vGI~S~~~~~~c~~~~~p~vyt~v~~~~~WI~~~i~~n  240 (240)
T d1gvkb_         203 HGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIASN  240 (240)
T ss_dssp             EEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHHC
T ss_pred             EEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHHHHhcC
Confidence            999999864  666778999999999999999999864

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=99.97  E-value=8.3e-30  Score=193.65  Aligned_cols=187  Identities=25%  Similarity=0.423  Sum_probs=153.0

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      ..+..+.|+.|..+.....+   .+.+.|+++++||.|+.+...+.+|||||+|++++.+++.+.|+|++...... .+.
T Consensus        49 ~~~~~~~v~~~~~~~~~~~~---~~~~~v~~~~~h~~~~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~~~~~  125 (241)
T d1m9ua_          49 VLPNNIRVIAGLWQQSDTSG---TQTANVDSYTMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGT  125 (241)
T ss_dssp             CCGGGEEEEESCSBTTCCTT---CEEEEEEEEEECTTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTC
T ss_pred             ccCceeeEEEEeeecccccc---cccccceeeeeeeeeccccccccccceeeeccceeeeeeceeeeeeeccccccccce
Confidence            45677889999887766544   78999999999999997667788999999999999999999999998776543 678


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcE
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW  163 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~  163 (203)
                      .+.+.||+........ ...++.+.+.+++.++|+..+...... ......+|..........|.+|+||||++.. +++
T Consensus       126 ~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~sGgpl~~~~-~~~  202 (241)
T d1m9ua_         126 TCVISGWGRTDGTNNL-PDILQKSSIPVITTAQCTAAMVGVGGA-NIWDNHICVQDPAGNTGACNGDSGGPLNCPD-GGT  202 (241)
T ss_dssp             EEEEEESSCSSSSSCC-CSBCEEEEEEBCCHHHHHHHHTTSTTC-CCCTTEEEECCTTSCCBCCTTCTTCEEEEES-SSE
T ss_pred             EEEEeecccccCCCCC-CCcceEEEEEeechhHhhhhhhccccc-ccccceeEeecccCCcCcccCCCCcceEEec-CCE
Confidence            8999999987765543 678999999999999999877654332 2445566665555567899999999999864 678


Q ss_pred             EEEEEEEecC----CCCCCCCCeEEEeCCCCHHHHHHh
Q psy12782        164 FLIGIVSAGY----SCAQQGQPGIYHRVAYTVDWISYI  197 (203)
Q Consensus       164 ~lvGv~s~~~----~c~~~~~~~v~t~v~~~~~WI~~~  197 (203)
                      +|+||+++..    .|+..+.|.+||||++|++||++.
T Consensus       203 ~l~Gi~s~~~~~g~~~~~~~~p~vft~V~~y~~WI~~n  240 (241)
T d1m9ua_         203 RVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDN  240 (241)
T ss_dssp             EEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHHH
T ss_pred             EEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHHc
Confidence            8999998753    477778899999999999999974

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-31  Score=208.81  Aligned_cols=187  Identities=22%  Similarity=0.413  Sum_probs=128.2

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCC-------CCCCCCCeEEEEECCCcCCCCCccceecCCCC
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFT-------PQADRYDVAVLRLDRPVQYMPHIAPICLPEKG   77 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~-------~~~~~~DiALl~L~~~~~~~~~i~picl~~~~   77 (203)
                      ..+..+.|++|..          .+.+.|.++++||+|+..       ...+.||||||||++|+.|+++|+|||||...
T Consensus        55 ~~~~~~~v~~g~~----------~~~~~v~~i~~Hp~y~~~~~~~~~~~~~~~~DIALl~L~~~~~~s~~v~PIcLp~~~  124 (287)
T d1rrka1          55 DKEHSIKVSVGGE----------KRDLEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTE  124 (287)
T ss_dssp             CCGGGEEEEETTC----------SSCEEEEEEEECTTCCTTTTGGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBH
T ss_pred             CCcceEEEEeCCe----------eceeeeEEEEecCCccccccccccCCCcccccEEEEecccCccccceEEEEecCCcc
Confidence            3445678888752          345789999999999732       24567999999999999999999999999764


Q ss_pred             CCcc------CceeEEeecccccC------CCCCCccCceEEEEeeeChhhHh---hHhhh-------CCCcccccCCeE
Q psy12782         78 EDFL------GQFGWAAGWGALQA------GSRLRPKTLQAVDVPIIDNRQCE---RWHKS-------NGINVVIYDEMM  135 (203)
Q Consensus        78 ~~~~------~~~~~~~Gwg~~~~------~~~~~~~~l~~~~~~~~~~~~C~---~~~~~-------~~~~~~~~~~~~  135 (203)
                      ....      ...+...+|+....      ........++...+.+.+...|.   .....       ......+++.||
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  204 (287)
T d1rrka1         125 GTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFL  204 (287)
T ss_dssp             HHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEE
T ss_pred             ccccccccCCcceEeecCceeecCCCccccccccCCceeEEEEEEEeccchhhhhhhhhhccccccccccccccccCCce
Confidence            3211      11111122221111      00112455677777777655543   22211       111234678999


Q ss_pred             EeeeeC--CCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCC--C--------CCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        136 CAGYRG--GAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS--C--------AQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       136 C~~~~~--~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~--c--------~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      ||+...  .....|.||+||||++..+++|+|+||+|||..  |        +....|.+||||+.|++||+++|+.+
T Consensus       205 Cag~~~~~~~~~~C~GDSGgPL~~~~~~~~~lvGI~S~G~~~~~~~~~~~~~~~~~~~~vyt~V~~y~~WI~~~i~~~  282 (287)
T d1rrka1         205 CTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQDE  282 (287)
T ss_dssp             EEESSSSSCCCCCCGGGTTCEEEEEETTEEEEEEEEEEESCCCC--------CCTTCEEEEEEGGGGHHHHHHHTTTS
T ss_pred             EecccCCCcCCCCCCCCccCCeEEecCCeEEEEEEEEecCCcCcCCCCCCCcCCCCCCcEEEEHHHHHHHHHHHhcCC
Confidence            997543  335679999999999999999999999999742  2        22346889999999999999999865

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.97  E-value=5.4e-30  Score=194.34  Aligned_cols=164  Identities=33%  Similarity=0.577  Sum_probs=138.4

Q ss_pred             ceEEeeEEEEeCCCCCC---------CCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCC
Q psy12782         28 AYTFGVRKINVHPYFKF---------TPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSR   98 (203)
Q Consensus        28 ~~~~~v~~i~~hp~y~~---------~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~   98 (203)
                      .....+.++..|+.|..         ......+|||||+|++|+.+++.+.|+||+..... ....+.++|||.......
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diall~L~~~v~~~~~i~~i~l~~~~~~-~~~~~~~~g~g~~~~~~~  139 (235)
T d1tona_          61 AQRRLVRQSFRHPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPK-VGSTCLASGWGSTNPSEM  139 (235)
T ss_dssp             CEEECEEEEEECTTCCCC--------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCCC-TTCEEEEEESSCSSSSSC
T ss_pred             eeEeeeeeeeeeeeceeeeeeecccccccccccceeEEEecCccccCCccccccccccccc-ccceeEEEEccccccccc
Confidence            56677888888887752         13456789999999999999999999999987653 577889999998776655


Q ss_pred             CCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecC-CCCC
Q psy12782         99 LRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGY-SCAQ  177 (203)
Q Consensus        99 ~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~-~c~~  177 (203)
                      .....++...+++++.++|+..++..     ..+.++|+.........|.+|+||||+++    |+|+||+|++. .|+.
T Consensus       140 ~~~~~l~~~~~~~~~~~~C~~~~~~~-----~~~~~~c~~~~~~~~~~c~gdsG~Pl~~~----~~l~Gi~S~g~~~c~~  210 (235)
T d1tona_         140 VVSHDLQCVNIHLLSNEKCIETYKDN-----VTDVMLCAGEMEGGKDTCAGDSGGPLICD----GVLQGITSGGATPCAK  210 (235)
T ss_dssp             CCCSBCEEEEEEEECGGGCGGGGSTT-----GGGGEEEEECTTCSCBCCTTCTTCEEEET----TEEEEEECCCCSSCSC
T ss_pred             cccccceeeeeeeeCHHHHHHHhCCC-----CCCCceEeCcCCCCccccCCCcCCeEEEc----CEEEEEEEeCCCCCCC
Confidence            55678999999999999999887653     67889999876667789999999999995    47999999987 5777


Q ss_pred             CCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        178 QGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       178 ~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      .+.|.+||||++|++||+++|+++
T Consensus       211 ~~~p~vyt~v~~y~~WI~~~i~~~  234 (235)
T d1tona_         211 PKTPAIYAKLIKFTSWIKKVMKEN  234 (235)
T ss_dssp             TTCCEEEEEGGGGHHHHHHHHHHC
T ss_pred             CCCCeEEEEHHHHHHHHHHHHHHC
Confidence            788999999999999999999875

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-29  Score=190.80  Aligned_cols=180  Identities=30%  Similarity=0.546  Sum_probs=145.7

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      ....+.|..+..+......  ..+.+.|.+++.||.|+  .....+|||||+|++|+.+++.+.|+|+|...... .+..
T Consensus        47 ~~~~~~v~~~~~~~~~~~~--~~~~~~v~~i~~~~~y~--~~~~~~diAll~l~~~~~~~~~v~p~~l~~~~~~~~~~~~  122 (228)
T d1bioa_          47 ADGKVQVLLGAHSLSQPEP--SKRLYDVLRAVPHPDSQ--PDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTL  122 (228)
T ss_dssp             SSSCEEEEESCSBSSSCCT--TCEEEEEEEEEECTTCC--TTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTCE
T ss_pred             ccceeeeeccccccccCCc--ceeeccceeeeeeeccc--CCCcccceehhhccccceeeeEEeeecccccccccccCce
Confidence            3455667777766555444  48889999999999997  57789999999999999999999999999876544 5778


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      +.+.|||.....+.. ...++...+++++.+.|.......    ......+|.... .....|.||+|+||+++    |+
T Consensus       123 ~~~~g~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~gdsG~Pl~~~----~~  192 (228)
T d1bioa_         123 CDVAGWGIVNHAGRR-PDSLQHVLLPVLDRATCNRRTHHD----GAITERLMCAES-NRRDSCKGDSGGPLVCG----GV  192 (228)
T ss_dssp             EEEEESSCCSTTCCC-CSBCEEEEEEEECHHHHHSTTTTT----TCCCTTEEEECC-SSCBCCTTTTTCEEEET----TE
T ss_pred             EEEecceeecCCCCC-CCcceEEEEEEeCHHHHhhhhccc----ccccccceeecc-cCCCcccCCcCccEEEc----CE
Confidence            899999987765544 677999999999999998766543    244555666543 45789999999999995    36


Q ss_pred             EEEEEEecC-CCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        165 LIGIVSAGY-SCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       165 lvGv~s~~~-~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      |+||+|++. .|+..+.|++||||++|++||+++|+
T Consensus       193 LvGi~S~g~~~c~~~~~p~v~t~v~~~~~WI~~~i~  228 (228)
T d1bioa_         193 LEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             EEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             EEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            999999986 47777889999999999999999984

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=99.97  E-value=5.2e-30  Score=193.55  Aligned_cols=177  Identities=27%  Similarity=0.452  Sum_probs=134.2

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCcee
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFG   85 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~   85 (203)
                      ....+.|++|..+...      .+.+.+..+.+||.|++  ....||||||||++++.++     +|++.......+..+
T Consensus        44 ~~~~~~v~~g~~~~~~------~~~~~i~~~~i~~~~~~--~~~~~DIAllkL~~~~~~~-----~~~~~~~~~~~~~~~  110 (223)
T d1os8a_          44 NNTSITATGGVVDLQS------SSAVKVRSTKVLQAPGY--NGTGKDWALIKLAQPINQP-----TLKIATTTAYNQGTF  110 (223)
T ss_dssp             ECCCCEEEESCSBTTC------TTCEEEEEEEEEECTTC--SSSSCCCEEEEESSCCCSC-----CCEECCSSTTSSSEE
T ss_pred             Ccceeeeccccccccc------cccccceeeeeeecccc--cccceeeeeeeeeeeeecc-----cccccccccccccce
Confidence            4556889999887654      33344555566666653  4678999999999998764     444444333467889


Q ss_pred             EEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeE-EeeeeCCCCCCCcCCCCCeeEEee-CCcE
Q psy12782         86 WAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMM-CAGYRGGAKDSCQGDSGGPLMMER-TGRW  163 (203)
Q Consensus        86 ~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~-C~~~~~~~~~~c~~d~G~pl~~~~-~~~~  163 (203)
                      .+.||+........ ...++..++.+++.++|+......    .....++ |........+.|.+|+|+||++.+ .++|
T Consensus       111 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~~~~~----~~~~~~~~~~~~~~~~~~~c~~~~G~pl~~~~~~~~~  185 (223)
T d1os8a_         111 TVAGWGANREGGSQ-QRYLLKANVPFVSDAACRSAYGNE----LVANEEICAGYPDTGGVDTCQGDSGGPMFRKDNADEW  185 (223)
T ss_dssp             EEEESSCSSTTCCC-CSBCEEEEEEEECHHHHHHHHGGG----SCTTTEEEESCTTTCCCBCCTTCTTCEEEEECTTSCE
T ss_pred             EEeecccccccccc-ccccccceeeEeCHHHhhhhhcCC----CccCcceeeeccccCCcCccccccccceEEecCCCeE
Confidence            99999877655433 567899999999999998877653    2344444 444344456789999999999975 4689


Q ss_pred             EEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        164 FLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       164 ~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      +|+||.|++..|+..+.|++|+||++|++||+++|+.
T Consensus       186 ~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~k~  222 (223)
T d1os8a_         186 IQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAART  222 (223)
T ss_dssp             EEEEEEEECSSSSCTTCCEEEEEHHHHHHHHHHHHHT
T ss_pred             EEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhh
Confidence            9999999999998888999999999999999999964

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=3.9e-30  Score=194.40  Aligned_cols=178  Identities=30%  Similarity=0.523  Sum_probs=126.2

Q ss_pred             eEEEeeeeeecccCCCCCceEEeeEE-----------EEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCC
Q psy12782         10 VQVTLGDYVINSAVEPLPAYTFGVRK-----------INVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGE   78 (203)
Q Consensus        10 ~~V~~G~~~~~~~~~~~~~~~~~v~~-----------i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~   78 (203)
                      ..|++|...+......  .+...+..           +..||.|+  ...+.+|||||+|++|+.++++++|||||....
T Consensus        38 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~Diall~L~~~v~~~~~v~pi~l~~~~~  113 (228)
T d1sgfa_          38 YQVWLGKNNFLEDEPS--DQHRLVSKAIPHPDFNMSLLNEHTPQP--EDDYSNDLMLLRLSKPADITDVVKPITLPTEEP  113 (228)
T ss_dssp             CEEEECC----C-CTT--CEEEEEEEEEECTTSCGGGC----CCT--TCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCC
T ss_pred             ceEEEeeeeecccccc--ceeeeeeeeccccceeeeeecccCCCC--ccccccceeEEeeccccccCCceeeEecCcccc
Confidence            4577777766554332  33333333           45788776  678889999999999999999999999998875


Q ss_pred             CccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEe
Q psy12782         79 DFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMME  158 (203)
Q Consensus        79 ~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~  158 (203)
                      . ....+...||+.........+..|+...+.+++.+.|++....     ...+.++|+.........|.+|+|+||+++
T Consensus       114 ~-~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~-----~~~~~~~~~~~~~~~~~~~~~d~G~pl~~~  187 (228)
T d1sgfa_         114 K-LGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKAHEM-----KVTDAMLCAGEMDGGSYTCEHDSGGPLICD  187 (228)
T ss_dssp             C-TTCEEEEC-------C---------CEEEEEECTHHHHTTCSS-----BCCTTEEEEEECSSSEEECCCCTTCEEEET
T ss_pred             c-cCcceEEEeeeeccCCccCCCCccEEEEEEEeCHHHhhhhccC-----CcccceEEeccCCCCccccCCCcCCcEEEe
Confidence            3 5778999999877655444467899999999999999886654     366778888777666789999999999995


Q ss_pred             eCCcEEEEEEEEecC-CCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        159 RTGRWFLIGIVSAGY-SCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       159 ~~~~~~lvGv~s~~~-~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      .    +|+||+|++. .|+..+.|++||||++|++||+++|+.+
T Consensus       188 ~----~l~Gv~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~~n  227 (228)
T d1sgfa_         188 G----ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMANN  227 (228)
T ss_dssp             T----EEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHHHSC
T ss_pred             C----EEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHhHC
Confidence            3    6999999986 5888889999999999999999999865

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=99.97  E-value=2.9e-29  Score=190.40  Aligned_cols=161  Identities=30%  Similarity=0.522  Sum_probs=134.3

Q ss_pred             EeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEe
Q psy12782         31 FGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVP  110 (203)
Q Consensus        31 ~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~  110 (203)
                      ......+.|+.|+  .....+|||||||++|+.|+.+++|+|||.... ..+..+.++||+............++...+.
T Consensus        67 ~~~~~~~~~~~~~--~~~~~~DiaLl~L~~~v~~~~~i~picl~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  143 (234)
T d1op0a_          67 NPKEKFICPNKNN--NEVLDKDIMLIKLDKPISNSKHIAPLSLPSSPP-SVGSVCRIMGWGSITPVKETFPDVPYCANIN  143 (234)
T ss_dssp             CEEEEEECTTCCT--TCTTSSCCEEEEESSCCCCBTTBCCCCCCSSCC-CTTCEEEEEESSCSSSSSCCCCSSCEEEEEE
T ss_pred             eeeeecccccccc--ccccchhhhhhhcCCceeccceeecccccccCc-ccceEEEEeeeccccccccccccccccccce
Confidence            3445677788776  567899999999999999999999999998764 4688999999997776555556789999999


Q ss_pred             eeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecC-CCCCCCCCeEEEeCCC
Q psy12782        111 IIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGY-SCAQQGQPGIYHRVAY  189 (203)
Q Consensus       111 ~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~-~c~~~~~~~v~t~v~~  189 (203)
                      +++.+.|.......    .....++|..........|.||+|+||++..    +|+||+|++. .|+....|.+||||++
T Consensus       144 ~~~~~~C~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~G~Pl~~~~----~l~Gi~S~g~~~c~~~~~p~vft~v~~  215 (234)
T d1op0a_         144 LLDHAVCQAGYPEL----LAEYRTLCAGIVQGGKDTCGGDSGGPLICNG----QFQGIVSYGAHPCGQGPKPGIYTNVFD  215 (234)
T ss_dssp             EECHHHHHHHCTTC----CTTSCEEEEECTTCCCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTSCEEEEESGG
T ss_pred             EechHHhcccccCc----ceeeeeeeecccccccccccCCCCceEEEcC----EEEEEEEEcCCCCCCCCCCeEEEEHHH
Confidence            99999999887654    3455666666555668899999999999963    5999999986 5888788999999999


Q ss_pred             CHHHHHHhhcccC
Q psy12782        190 TVDWISYIMNTAT  202 (203)
Q Consensus       190 ~~~WI~~~i~~~~  202 (203)
                      |++||+++|+.++
T Consensus       216 y~~WI~~~i~~~~  228 (234)
T d1op0a_         216 YTDWIQRNIAGNT  228 (234)
T ss_dssp             GHHHHHHHHHTCT
T ss_pred             HHHHHHHHHhhcC
Confidence            9999999998765

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=99.97  E-value=1.6e-29  Score=191.36  Aligned_cols=176  Identities=29%  Similarity=0.475  Sum_probs=140.6

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc---cC
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF---LG   82 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~---~~   82 (203)
                      ++..+.|++|..+...     .++.+.|.++++||.|+  .....+|||||+|+++ .+++.++|+||+......   .+
T Consensus        49 ~~~~~~v~~~~~~~~~-----~~~~~~v~~i~~hp~y~--~~~~~~DiALl~L~~~-~~~~~v~pi~l~~~~~~~~~~~~  120 (230)
T d2hlca_          49 DAVSVVVYLGSAVQYE-----GEAVVNSERIISHSMFN--PDTYLNDVALIKIPHV-EYTDNIQPIRLPSGEELNNKFEN  120 (230)
T ss_dssp             TEEEEEEEESCSBTTC-----CSEEEECSEEEECTTCB--TTTTBTCCEEEECSCC-CCCSSCCCCBCCCGGGGGCCCTT
T ss_pred             ccccceeecccceecc-----cccceeeEeEEeeeccc--ccccccceeEEEeecc-cccccceeEEeeccccccccccc
Confidence            3456778888766544     37899999999999997  5678899999999876 578899999998765433   36


Q ss_pred             ceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCc
Q psy12782         83 QFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGR  162 (203)
Q Consensus        83 ~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~  162 (203)
                      ..+.+.|||.....    ...++...+..++.+.|.......    ...+.++|+.. ......|.||+|+|++++  ++
T Consensus       121 ~~~~~~g~~~~~~~----~~~~~~~~~~~~~~~~c~~~~~~~----~~~~~~~~~~~-~~~~~~~~gdsGgp~~~~--~~  189 (230)
T d2hlca_         121 IWATVSGWGQSNTD----TVILQYTYNLVIDNDRCAQEYPPG----IIVESTICGDT-SDGKSPCFGDSGGPFVLS--DK  189 (230)
T ss_dssp             CEEEEEESSCCSSC----CCBCEEEEEEEECHHHHHTTSCTT----SSCTTEEEECC-TTSCBCCTTCTTCEEEEG--GG
T ss_pred             eeEEEEeecccccc----chhhheeeeccccchhhhhccccc----cccccceEecc-ccCccccccccCCCeEEC--CC
Confidence            67888899865433    456888999999999998766543    35677788764 445788999999999996  56


Q ss_pred             EEEEEEEEecCC-CCCCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        163 WFLIGIVSAGYS-CAQQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       163 ~~lvGv~s~~~~-c~~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      |+|+||+|++.. |+..+.|.+||+|++|++||+++|+-
T Consensus       190 ~~l~Gi~S~~~~~~~~~~~p~vyt~V~~y~~WI~~~~~~  228 (230)
T d2hlca_         190 NLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTGI  228 (230)
T ss_dssp             TEEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHHHCC
T ss_pred             eEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhCC
Confidence            799999999875 45668899999999999999999873

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.3e-29  Score=187.66  Aligned_cols=171  Identities=24%  Similarity=0.374  Sum_probs=137.6

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      .....+.|++|.........   .+.+.+.+++.||.|+  ..+..+|||||+|+.|+.++++++|+|||...... .+.
T Consensus        49 ~~~~~~~v~~g~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~diAll~L~~~~~~~~~v~picl~~~~~~~~~~~  123 (221)
T d1fuja_          49 IPQRLVNVVLGAHNVRTQEP---TQQHFSVAQVFLNNYD--AENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGT  123 (221)
T ss_dssp             SCGGGEEEEESCSBTTSCCT---TCEEEEEEEEEECCCB--TTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTC
T ss_pred             cCCccceeeeeccccccccc---cceeeeeeeEEEeeec--CCCCccEEEEEEccccccccceEEEEEecccccccCCCc
Confidence            35567889999977766544   6788999999999997  57889999999999999999999999999886644 578


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcE
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW  163 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~  163 (203)
                      .+.+.||+.....+.. ...++...+.+.+...|             ....+|.. .......|.+|+||||+++.    
T Consensus       124 ~~~~~G~~~~~~~~~~-~~~l~~~~~~~~~~~~~-------------~~~~~~~~-~~~~~~~c~gd~G~pl~~~~----  184 (221)
T d1fuja_         124 QCLAMGWGRVGAHDPP-AQVLQELNVTVVTFFCR-------------PHNICTFV-PRRKAGICFGDSGGPLICDG----  184 (221)
T ss_dssp             EEEEEESSBSCSSSCB-CSBCEEEEEEEECTTCC-------------TTEEEEEC-SSSSCBCCTTCTTCEEEETT----
T ss_pred             eEEEeccccccccccc-Cccceeeeeeeeeeccc-------------cccceecc-ccCCCceeCCccCCCEEEeC----
Confidence            8999999987665543 56788888887764422             12233333 34557899999999999964    


Q ss_pred             EEEEEEEecC-CCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        164 FLIGIVSAGY-SCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       164 ~lvGv~s~~~-~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      +|+||.|++. +|+..+.|.+||||++|++||+++|+
T Consensus       185 ~l~Gi~s~~~~gc~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1fuja_         185 IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             EEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             EEEEEEEEEECCCCCCCCCeEEEEHHHhHHHHHHHhC
Confidence            5999999986 68888889999999999999999985

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.5e-29  Score=185.96  Aligned_cols=171  Identities=26%  Similarity=0.436  Sum_probs=138.6

Q ss_pred             CCCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCc
Q psy12782          5 ASARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQ   83 (203)
Q Consensus         5 ~~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~   83 (203)
                      .+...+.|.++..+......   .+.+.+..++.|+.|+  ...+.+|||||+|++|+.+++.++|+|+|...... ...
T Consensus        46 ~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~diall~l~~~~~~~~~~~pi~l~~~~~~~~~~~  120 (218)
T d2z7fe1          46 VNVRAVRVVLGAHNLSRREP---TRQVFAVQRIFENGYD--PVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGV  120 (218)
T ss_dssp             SCGGGCEEEESCSBTTSCCT---TCEEEEEEEEEESCCB--TTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTC
T ss_pred             ccccceeeeeeecccccccc---ceeeeeeeeEeeeccc--cccccceEEEeeccccceeeeeeeeeeeccCccccCCCc
Confidence            45667889999887766544   6777888999999987  57789999999999999999999999999876654 567


Q ss_pred             eeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcE
Q psy12782         84 FGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRW  163 (203)
Q Consensus        84 ~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~  163 (203)
                      .+.++||+........ ...++..++.+.+. .|.             ..+.|+.........|.||+||||+|+.    
T Consensus       121 ~~~~~g~~~~~~~~~~-~~~l~~~~~~~~~~-~c~-------------~~~~~~~~~~~~~~~C~gdsG~Pl~~~~----  181 (218)
T d2z7fe1         121 QCLAMGWGLLGRNRGI-ASVLQELNVTVVTS-LCR-------------RSNVCTLVRGRQAGVCFGDSGSPLVCNG----  181 (218)
T ss_dssp             EEEEEESSBCSSSCCB-CSBCEEEEEEEECT-TCC-------------TTSEEEECTTSCCBCCTTCTTCEEEETT----
T ss_pred             EEEEeccceeeccccc-ccceeEEEeccccc-ccc-------------eeeeeeeecCcccCccccccCCCEEECC----
Confidence            7899999977665543 56788888888763 353             3456765545556789999999999963    


Q ss_pred             EEEEEEEecC-CCCCCCCCeEEEeCCCCHHHHHHhhc
Q psy12782        164 FLIGIVSAGY-SCAQQGQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       164 ~lvGv~s~~~-~c~~~~~~~v~t~v~~~~~WI~~~i~  199 (203)
                      +|+||+||+. .|+..+.|.+||||++|++||+++|+
T Consensus       182 ~l~GI~s~~~~~c~~~~~p~vft~v~~~~~WI~~~i~  218 (218)
T d2z7fe1         182 LIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             EEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             EEEEEEEEecCCCCCCCcCEEEEEhHHhHHHHHHHhC
Confidence            6999999975 57777889999999999999999985

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.1e-28  Score=185.96  Aligned_cols=173  Identities=25%  Similarity=0.419  Sum_probs=140.6

Q ss_pred             CCceeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCce
Q psy12782          6 SARQVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQF   84 (203)
Q Consensus         6 ~~~~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~   84 (203)
                      +.....|++|.......+..  .....+.+++.|+.|+  .....||||||+|++|+.+++.+.|+||+...... .+..
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~DIAll~L~~~i~~~~~~~~~~l~~~~~~~~~~~~  122 (225)
T d1a7sa_          47 NPGVSTVVLGAYDLRRRERQ--SRQTFSISSMSENGYD--PQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTR  122 (225)
T ss_dssp             -CCSEEEEESCSSTTSCCTT--TCEEEEEEEEECSSCB--TTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCE
T ss_pred             cccceeeEEeeeeccccccc--ccceeeeeeeeeeecc--ccccccccchhhcCCcccccccceeEEeeccccccCCCce
Confidence            44566788887776655443  6778889999999997  56788999999999999999999999998776544 5788


Q ss_pred             eEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEE
Q psy12782         85 GWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWF  164 (203)
Q Consensus        85 ~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~  164 (203)
                      +.++|||........ ...++...+.+++.+.|...             ..|..........|.+|+||||+|+    |+
T Consensus       123 ~~~~g~~~~~~~~~~-~~~l~~~~~~~~~~~~C~~~-------------~~~~~~~~~~~~~c~gdsG~Pl~~~----~~  184 (225)
T d1a7sa_         123 CQVAGWGSQRSGGRL-SRFPRFVNVTVTPEDQCRPN-------------NVCTGVLTRRGGICNGDGGTPLVCE----GL  184 (225)
T ss_dssp             EEEEESCCSSTTCCC-CSSCEEEEEEECCGGGSCTT-------------EEEEECSSSSCBCCTTCTTCEEEET----TE
T ss_pred             eEecccccccccccc-ccceeEEEEEEeehhhcccc-------------cceeeecccccccccCCCCCCEEEe----CE
Confidence            999999987765543 67899999999999999642             3455444556789999999999995    36


Q ss_pred             EEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhhccc
Q psy12782        165 LIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIMNTA  201 (203)
Q Consensus       165 lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i~~~  201 (203)
                      |+||.|++..|+. ..|.+||||++|++||+++|+..
T Consensus       185 l~Gi~S~~~~~c~-~~p~v~t~v~~y~~WI~~~i~~~  220 (225)
T d1a7sa_         185 AHGVASFSLGPCG-RGPDFFTRVALFRDWIDGVLNNP  220 (225)
T ss_dssp             EEEEEEEECSSTT-SSCEEEEEGGGGHHHHHHHHHSC
T ss_pred             EEEEEEECCCCCC-CCCCEEEEHHHHHHHHHHHHCCC
Confidence            9999999987665 45999999999999999999864

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.6e-28  Score=183.27  Aligned_cols=160  Identities=32%  Similarity=0.591  Sum_probs=129.3

Q ss_pred             EEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCc-cCceeEEeecccccCCCCCCccCceEEEEeeeC
Q psy12782         35 KINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDF-LGQFGWAAGWGALQAGSRLRPKTLQAVDVPIID  113 (203)
Q Consensus        35 ~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~-~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~  113 (203)
                      +.+.|+.|+  .....+||||++|..++.+++.+.|+||+...... ....+...||+......  ....++...+.+++
T Consensus        87 ~~~~~~~~~--~~~~~~DiAl~~L~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~~~  162 (247)
T d1rjxb_          87 QEIEVSRLF--LEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTF--GAGLLMEAQLPVIE  162 (247)
T ss_dssp             EEEEEEEEE--ECSSSCCEEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCC----C--CCSBCEEEEEEEEC
T ss_pred             eEEeecccc--CCCccchhhhhhhhcccccccccccccccccccccCCCceeeecccccccCCC--CCCcceEEEEEEEc
Confidence            344455444  24567899999999999999999999998776543 46667888888765443  26778999999999


Q ss_pred             hhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHH
Q psy12782        114 NRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDW  193 (203)
Q Consensus       114 ~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~W  193 (203)
                      .+.|.......   ....+.++|+.........|.||+||||++..+++|+|+||+|++..|+..+.|.+||||++|++|
T Consensus       163 ~~~~~~~~~~~---~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~v~~~~~W  239 (247)
T d1rjxb_         163 NKVCNRYEFLN---GRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTW  239 (247)
T ss_dssp             HHHHTSTTTTT---TCSCTTEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEECTTSCCBBTTBCEEEEEGGGGHHH
T ss_pred             hHHhhhhhccC---cccccceeEEeccCCCcccccCCccceEEEeeCCEEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHH
Confidence            99997755432   246788999987666788999999999999999999999999999999888889999999999999


Q ss_pred             HHHhhccc
Q psy12782        194 ISYIMNTA  201 (203)
Q Consensus       194 I~~~i~~~  201 (203)
                      |+++|+.+
T Consensus       240 I~~~i~~~  247 (247)
T d1rjxb_         240 IEGVMRNN  247 (247)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999853

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.96  E-value=8.9e-29  Score=187.68  Aligned_cols=165  Identities=27%  Similarity=0.478  Sum_probs=137.3

Q ss_pred             ceEEeeEEEEeCCCCCCC---------CCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCC
Q psy12782         28 AYTFGVRKINVHPYFKFT---------PQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSR   98 (203)
Q Consensus        28 ~~~~~v~~i~~hp~y~~~---------~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~   98 (203)
                      .+...+...+.|+.|+..         ...+.+|||||+|++|+.+++.++|+|||.... ..+..+.+.|||.......
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Diali~L~~pv~~~~~v~p~~l~~~~~-~~~~~~~~~g~g~~~~~~~  141 (237)
T d1gvza_          63 AQFHQVSDSFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEP-KLGSTCYTSGWGLISTFTN  141 (237)
T ss_dssp             CEEECEEEEEECTTSCGGGGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSCC-CTTCEEEEEEEECSCTTTC
T ss_pred             ceeeeeeeEEeeeeeeeeeeecccccCccccccceEEEEECCceeccccccccccccccc-ccceeEEEEeeeeeccccc
Confidence            677788999999887521         234579999999999999999999999997764 4578899999998766554


Q ss_pred             CCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCC-CCC
Q psy12782         99 LRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS-CAQ  177 (203)
Q Consensus        99 ~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~-c~~  177 (203)
                      .....|+...+++++.+.|...++..     ..+..+|..........|.||+||||+++.    +|+||+|++.. |+.
T Consensus       142 ~~~~~l~~~~~~~~~~~~C~~~~~~~-----~~~~~~~~~~~~~~~~~~~gdsG~pl~~~~----~l~Gv~s~g~~~c~~  212 (237)
T d1gvza_         142 RGSGTLQCVELRLQSNEKCARAYPEK-----MTEFVLCATHRDDSGSICLGDSGGALICDG----VFQGITSWGYSECAD  212 (237)
T ss_dssp             SEEEEEEEEEEEEECGGGGCSSCGGG-----CCTTEEEEECSSTTCEECGGGTTCEEEETT----EEEEEECCCSSSCEE
T ss_pred             cccceeeEEEEEeecHHHHHhhcccc-----cccccccceecccccccccCCCCCcEEEcC----EEEEEEEeccCCCCC
Confidence            44677999999999999999887653     567777776666678899999999999953    69999999874 777


Q ss_pred             CCCCeEEEeCCCCHHHHHHhhcccC
Q psy12782        178 QGQPGIYHRVAYTVDWISYIMNTAT  202 (203)
Q Consensus       178 ~~~~~v~t~v~~~~~WI~~~i~~~~  202 (203)
                      .+.|.+||||++|++||+++|++++
T Consensus       213 ~~~p~v~t~v~~y~~WI~~~i~~~~  237 (237)
T d1gvza_         213 FNDNFVFTKVMPHKKWIKETIEKNS  237 (237)
T ss_dssp             TTTSCCEEESGGGHHHHHHHHHHHC
T ss_pred             CCCCeEEEEHHHHHHHHHHHHHhcC
Confidence            7889999999999999999998764

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=99.57  E-value=1.1e-17  Score=124.11  Aligned_cols=154  Identities=16%  Similarity=0.172  Sum_probs=99.1

Q ss_pred             eeEEEeeeeeecccCCCCCceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEe
Q psy12782          9 QVQVTLGDYVINSAVEPLPAYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAA   88 (203)
Q Consensus         9 ~~~V~~G~~~~~~~~~~~~~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~   88 (203)
                      .+.+..|......     ......+.+++.||.|.. .....+|+|||+|+.++...  ..+++++.... ..++.+.+.
T Consensus        60 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~DiAll~l~~~~~~~--~~~~~~~~~~~-~~~~~~~~~  130 (215)
T d1p3ca_          60 KGSVYPGMNDSTA-----VNGSANMTEFYVPSGYIN-TGASQYDFAVIKTDTNIGNT--VGYRSIRQVTN-LTGTTIKIS  130 (215)
T ss_dssp             CCEEEETCBTTBC-----TTCCEEEEEEECCHHHHH-HCCGGGCCEEEEESSCHHHH--HCCCCBCCCSC-CTTCEEEEE
T ss_pred             eEEEeccccCCCC-----CceeEEEeEEEEeccccc-CCCccceEEEEEeccCCCcc--ccccccccccc-cCCceeEEE
Confidence            4566666644333     255688999999998863 23457899999999987643  44555655543 468999999


Q ss_pred             ecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEE
Q psy12782         89 GWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGI  168 (203)
Q Consensus        89 Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv  168 (203)
                      ||+........ ...+.........                 .....+.    .....|.||+||||+..   ++.|+||
T Consensus       131 G~~~~~~~~~~-~~~~~~~~~~~~~-----------------~~~~~~~----~~~~~~~G~SGgPl~~~---~~~lvGi  185 (215)
T d1p3ca_         131 GYPGDKMRSTG-KVSQWEMSGSVTR-----------------EDTNLAY----YTIDTFSGNSGSAMLDQ---NQQIVGV  185 (215)
T ss_dssp             ECCHHHHHHHS-SCCCEEEEEECCE-----------------ECSSEEE----ECCCCCTTCTTCEEECT---TSCEEEE
T ss_pred             cCCCCcCCCcc-cceeeEeeecccc-----------------cccccce----eecccCCCCccCeEECC---CCEEEEE
Confidence            99865432211 1111121111111                 1111111    12468999999999953   3469999


Q ss_pred             EEecCCCCC-CCCCeEEEeCCCCHHHHHH
Q psy12782        169 VSAGYSCAQ-QGQPGIYHRVAYTVDWISY  196 (203)
Q Consensus       169 ~s~~~~c~~-~~~~~v~t~v~~~~~WI~~  196 (203)
                      .|++..|+. ...|.+|++|..|++||++
T Consensus       186 ~s~g~~~~~~~~~~~i~~~v~~~i~wi~~  214 (215)
T d1p3ca_         186 HNAGYSNGTINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             CCEEEGGGTEEEEEBCCHHHHHHHHHHHT
T ss_pred             EEeccCCCCCCCCeEEEeEHHHHHHHHHc
Confidence            999876543 2347889999999999986

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.40  E-value=3e-15  Score=114.47  Aligned_cols=64  Identities=17%  Similarity=0.224  Sum_probs=49.2

Q ss_pred             ccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecC-CC--CCCCCCeEEEeCCCCHHHHHH
Q psy12782        130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGY-SC--AQQGQPGIYHRVAYTVDWISY  196 (203)
Q Consensus       130 ~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~-~c--~~~~~~~v~t~v~~~~~WI~~  196 (203)
                      ....++|+.........|.||+||||++.+.   .++||++++. .|  +..+.|.+|+||++|..||..
T Consensus       173 ~~~~~~c~~~~~~~~~~c~GDSGGPL~~~~g---~~vGvvsgg~s~c~~c~~~~p~vYtrV~~~~~~~~~  239 (263)
T d1arba_         173 AGTTHLNVQWQPSGGVTEPGSSGSPIYSPEK---RVLGQLHGGPSSCSATGTNRSDQYGRVFTSWTGGGA  239 (263)
T ss_dssp             SCSSEEEEECCTTSCCCCTTCTTCEEECTTS---CEEEEEEECSCCTTCCGGGSEEEEEEHHHHHHTTSS
T ss_pred             CCccEEEEEecCCCccccCCCCcceEEecCC---CEEEEEEEEEeCCcCCCCCCCceEEEEEEeeccCCc
Confidence            6678999987777678999999999998532   2899999885 23  234689999999987555543

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=99.08  E-value=8.8e-11  Score=84.17  Aligned_cols=58  Identities=21%  Similarity=0.233  Sum_probs=45.4

Q ss_pred             CeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHH
Q psy12782        133 EMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI  194 (203)
Q Consensus       133 ~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI  194 (203)
                      ...|..........|.|||||||++..+    ++||+|++..|+....+.+|++|+.++.+.
T Consensus       125 ~~~~~~~~~~~~~~~~GDSGgPl~~~~~----~vGi~s~g~~~~~~~~~~~~~pv~~~l~~~  182 (187)
T d1hpga_         125 DGPVYNMVRTTACSAGGDSGGAHFAGSV----ALGIHSGSSGCSGTAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             TEEEEEEEEECCCCCTTCTTCEEEETTE----EEEEEEEESCCBTTBCCCEEEEHHHHHHHH
T ss_pred             CccEeccEEcCcccccCCCCCeEEECCE----EEEEEEEEecCCCCCCCEEEEEHHHHHHHh
Confidence            3444443334468899999999998643    999999998887777889999999887664

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.69  E-value=7.5e-08  Score=71.69  Aligned_cols=136  Identities=17%  Similarity=0.182  Sum_probs=80.0

Q ss_pred             ceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcC---CCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCc
Q psy12782         28 AYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQ---YMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTL  104 (203)
Q Consensus        28 ~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~---~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l  104 (203)
                      ...+.+..+..+|.      ...+|||||+|..+..   +...+.|+.|........++.+.++||.....     ...+
T Consensus       102 ~~~~~~~~~~~~~~------~~~~D~All~l~~~~~~~~~~~~~~~~~l~~s~~~~~G~~v~~~GyP~~~~-----~~~~  170 (242)
T d1agja_         102 YGEYEVKEILQEPF------GAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHK-----VNQM  170 (242)
T ss_dssp             TCCEEEEEEESCTT------CTTSCCEEEEECCCTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTS-----TTCC
T ss_pred             cceEEEEEEeeecC------CCcCcEEEEEeccccccccccccCcceeecccccccCCcEEEEEEcCCCCc-----ccee
Confidence            34556666665552      3356999999976643   33457888887665444688999999963211     1223


Q ss_pred             eEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEE
Q psy12782        105 QAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIY  184 (203)
Q Consensus       105 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~  184 (203)
                      ......+...                 ...++..     ...+.|+|||||+.. ++  .||||.+.+..+.......-|
T Consensus       171 ~~~~~~~~~~-----------------~~~~~~~-----~~~~~G~SGgPl~~~-~g--~vVGI~~~~~~~~~~~~~~~~  225 (242)
T d1agja_         171 HRSEIELTTL-----------------SRGLRYY-----GFTVPGNSGSGIFNS-NG--ELVGIHSSKVSHLDREHQINY  225 (242)
T ss_dssp             EEEEEEECCG-----------------GGSEEEE-----CCCCGGGTTCEEECT-TS--EEEEEEEEEEECSSTTCEEEE
T ss_pred             Eecccccccc-----------------cccEEEe-----cccCCccCCCcEECC-CC--eEEEEEeEeecCCCCccceEE
Confidence            3333322211                 1123322     356789999999842 33  499999987654332222112


Q ss_pred             EeCCCCHHHHHHhhccc
Q psy12782        185 HRVAYTVDWISYIMNTA  201 (203)
Q Consensus       185 t~v~~~~~WI~~~i~~~  201 (203)
                        -.+..+||+++++++
T Consensus       226 --av~i~~~i~~~i~~~  240 (242)
T d1agja_         226 --GVGIGNYVKRIINEK  240 (242)
T ss_dssp             --EEECCHHHHHHHHHH
T ss_pred             --EEeCHHHHHHHHHHc
Confidence              123458888888764

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.40  E-value=1.7e-06  Score=62.75  Aligned_cols=119  Identities=15%  Similarity=0.123  Sum_probs=68.4

Q ss_pred             CCCCeEEEEECCCcCCCCCccce---ecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCC
Q psy12782         49 DRYDVAVLRLDRPVQYMPHIAPI---CLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNG  125 (203)
Q Consensus        49 ~~~DiALl~L~~~~~~~~~i~pi---cl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~  125 (203)
                      ...|+|||+|+.+........+.   .+........+....+.||......     .......-.+..            
T Consensus        90 ~~~D~all~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~-----~~~~~~~~~~~~------------  152 (216)
T d2o8la1          90 GEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKPV-----ATMWESKGKITY------------  152 (216)
T ss_dssp             SSSCCEEEEECCCTTSCCTTTSSCCCEECCCTTCCTTCEEEEEECCTTSST-----TCEEEEEEEEEE------------
T ss_pred             cCCceEEEEecccccccccccceeeeeccccccccCCceeEEEEccCCCce-----eeEEEEeeEEEE------------
Confidence            35699999999877654433332   3333332234667788888643221     122222222211            


Q ss_pred             CcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCC-CCHHHHHHhhcc
Q psy12782        126 INVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVA-YTVDWISYIMNT  200 (203)
Q Consensus       126 ~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~-~~~~WI~~~i~~  200 (203)
                          .....+..     .-..|.|+|||||+. .+++  ++||.+++..++.    ...+.+. ...+||++.|++
T Consensus       153 ----~~~~~l~~-----~~~~~~G~SGgPv~~-~~g~--vVGI~s~g~~~~~----~~~v~~~~~~~~~i~~~i~~  212 (216)
T d2o8la1         153 ----LKGEAMQY-----DLSTTGGNSGSPVFN-EKNE--VIGIHWGGVPNEF----NGAVFINENVRNFLKQNIED  212 (216)
T ss_dssp             ----EETTEEEE-----SCCCCTTCTTCEEEC-TTSC--EEEEEEEEETTTE----EEEEECCHHHHHHHHHHCTT
T ss_pred             ----ccCCeEEE-----ecCcCCCCCCCcEEC-CCCE--EEEEEeeecCCCC----cceEecCHHHHHHHHHhhhh
Confidence                22333332     246799999999994 3333  9999998854432    2233344 578999999875

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.18  E-value=8e-07  Score=63.11  Aligned_cols=46  Identities=28%  Similarity=0.446  Sum_probs=35.0

Q ss_pred             CCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHH
Q psy12782        145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWI  194 (203)
Q Consensus       145 ~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI  194 (203)
                      ...+|||||||+..++    ++||++.+..++.......|+.|..+++++
T Consensus       131 ~~~~GdSGGPv~~~~~----~vGi~sgg~~~~~~~~~~~~~pv~~~l~~~  176 (181)
T d2sgaa_         131 CAQPGDSGGSLFAGST----ALGLTSGGSGNCRTGGTTFYQPVTEALSAY  176 (181)
T ss_dssp             CCCTTCTTCEEEETTE----EEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             eccCCCcCCeeEECCE----EEEEEEEecCCCCCCceEEEEEHHHHHHHh
Confidence            4468999999997533    999999987665555568899987766553

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=97.49  E-value=0.00021  Score=50.21  Aligned_cols=38  Identities=32%  Similarity=0.503  Sum_probs=26.2

Q ss_pred             CCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEe
Q psy12782        145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHR  186 (203)
Q Consensus       145 ~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~  186 (203)
                      ....|||||||+..+    .++||.+.+..++.......|+.
T Consensus       135 ~~~~GdSGGPv~~~~----~~vGi~~~g~~~~~~~~~~~~~P  172 (185)
T d2qaaa1         135 CAEPGDSGGPLYSGT----RAIGLTSGGSGNCSSGGTTFFQP  172 (185)
T ss_dssp             CCCTTCTTCEEEETT----EEEEEEEEEEEETTTEEEEEEEE
T ss_pred             eecCCcccceeEECC----EEEEEEEEeecCCCCCceEEEEE
Confidence            455899999999743    39999999865444333345554

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.29  E-value=0.0003  Score=51.77  Aligned_cols=133  Identities=17%  Similarity=0.158  Sum_probs=70.0

Q ss_pred             ceEEeeEEEEeCCCCCCCCCCCCCCeEEEEECCCcCCCCCccc---eecCCCCCCccCceeEEeecccccCCCCCCccCc
Q psy12782         28 AYTFGVRKINVHPYFKFTPQADRYDVAVLRLDRPVQYMPHIAP---ICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTL  104 (203)
Q Consensus        28 ~~~~~v~~i~~hp~y~~~~~~~~~DiALl~L~~~~~~~~~i~p---icl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l  104 (203)
                      ...+.+..+..++.      ....|+|||+|+.+........+   +.+........++...+.||.......     ..
T Consensus        96 ~~~~~~~~~~~~~~------~~~~DiAll~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~G~P~~~~~~-----~~  164 (246)
T d1qtfa_          96 YGKFEAEEIKESPY------GQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGYPYNYSAY-----SL  164 (246)
T ss_dssp             TCCEEEEEEESCTT------CTTSCCEEEEECCCTTSCCHHHHSCCCCCCSSCCCCTTCEEEEEECCTTTSTT-----CC
T ss_pred             CceEEEEEEEecCC------cccCceEEEEeccccccccccccCceeeccccccccCCCEEEEEeCCCCCCcc-----ee
Confidence            44556666665552      22459999999876554332222   222222222357888999985432211     11


Q ss_pred             eEEEEeeeChhhHhhHhhhCCCcccccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCC------
Q psy12782        105 QAVDVPIIDNRQCERWHKSNGINVVIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQ------  178 (203)
Q Consensus       105 ~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~------  178 (203)
                      ........+                  ...+       ......|+|||||+.. +++  ||||.+.+..-...      
T Consensus       165 ~~~~~~~~~------------------~~~~-------~~~~~~G~SGgPv~n~-~G~--vVGI~~~g~~~~~~~~~~~~  216 (246)
T d1qtfa_         165 YQSQIEMFN------------------DSQY-------FGYTEVGNSGSGIFNL-KGE--LIGIHSGKGGQHNLPIGVFF  216 (246)
T ss_dssp             EEEEEEESS------------------SSBE-------ESCCCGGGTTCEEECT-TCC--EEEEEEEEETTTTEEEEEET
T ss_pred             eccceEeCC------------------CceE-------EeeccCCCCCCcEECC-CCe--EEEEEecccCCCCCccceEe
Confidence            111111110                  0011       1245689999999943 343  99999875431111      


Q ss_pred             --CCCeEEEeCCCCHHHHHHhhc
Q psy12782        179 --GQPGIYHRVAYTVDWISYIMN  199 (203)
Q Consensus       179 --~~~~v~t~v~~~~~WI~~~i~  199 (203)
                        ..-..+.....+.+||-..++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~  239 (246)
T d1qtfa_         217 NRKISSLYSVDNTFGDTLGNDLK  239 (246)
T ss_dssp             TCBCCTTTSTTCCSSCBHHHHHH
T ss_pred             ecccchhhhhhHHHHHHHHHHhh
Confidence              111345556667778766554

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.0048  Score=43.85  Aligned_cols=98  Identities=17%  Similarity=0.199  Sum_probs=50.3

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCccc
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV  129 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~  129 (203)
                      .+|+|||++..+-...    +..+........++.+...|+.......      .............+...         
T Consensus        82 ~~Dlall~~~~~~~~~----~~~~~~~~~~~~g~~v~~~G~p~~~~~~------~~~~~~~~~~~~~~~~~---------  142 (210)
T d2qf3a1          82 LTDLAVLKINATGGLP----TIPINARRVPHIGDVVLAIGNPYNLGQT------ITQGIISATGRIGLNPT---------  142 (210)
T ss_dssp             TTTEEEEECCCSSCCC----CCCCCTTCCCCTTBEEEEEECGGGSSSE------EEEEEEEESCC---------------
T ss_pred             ccchhheecccccccc----ccccccccccccceEEEEeccccccccc------cccccceeeeeeeeccc---------
Confidence            4599999998764422    3333333333358888888875322211      11111111111111110         


Q ss_pred             ccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCC
Q psy12782        130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYS  174 (203)
Q Consensus       130 ~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~  174 (203)
                      ....++...     ...-.|.|||||+... |+  |+||++....
T Consensus       143 ~~~~~i~~~-----a~i~~G~SGGPv~n~~-G~--vVGI~~~~~~  179 (210)
T d2qf3a1         143 GRQNFLQTD-----ASINHGNSGGALVNSL-GE--LMGINTLSFD  179 (210)
T ss_dssp             ---CCEEEC-----SCCCTTCTTCEEEETT-CC--EEEEEEEEC-
T ss_pred             cceeEEEEe-----eeEEeccCCCceEeec-CE--EEEEEEEEee
Confidence            112334332     3456789999999754 43  9999998654

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=97.02  E-value=0.004  Score=43.80  Aligned_cols=122  Identities=13%  Similarity=0.051  Sum_probs=63.2

Q ss_pred             CCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcc
Q psy12782         49 DRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV  128 (203)
Q Consensus        49 ~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~  128 (203)
                      ...|||||+|.....+.+....  ++.......++...+.|+.....        .......+.....-......     
T Consensus        75 ~~~Dlall~l~~~~~~~~~~~~--~~~~~~~~~g~~v~~ig~p~~~~--------~~~~~~~~~~~~~~~~~~~g-----  139 (199)
T d2bhga1          75 MLSDAALMVLHRGNKVRDITKH--FRDTARMKKGTPVVGVVNNADVG--------RLIFSGEALTYKDIVVSMDG-----  139 (199)
T ss_dssp             EECSEEEEEESSSCCBCCCGGG--BCSSCEECTTCEEEEEEEETTTE--------EEEEEEEESSCEECCC---------
T ss_pred             CCccEEEEEcCCCCcCCccccc--ccccccccccceEEEEEcCCCCC--------ceEEEEEEEEecceeecCCC-----
Confidence            3569999999876555444333  33333233578788888742110        01111111111100000000     


Q ss_pred             cccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHh
Q psy12782        129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYI  197 (203)
Q Consensus       129 ~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~  197 (203)
                      ......+...     ...-.|++||||+....+...++||.+.|...     .+..+.|  .+++|++.
T Consensus       140 ~~~~~~~~y~-----a~t~~G~cGgplv~~~~~~~~IvGih~aG~~g-----~G~a~~i--t~e~i~~~  196 (199)
T d2bhga1         140 DTMPGLFAYK-----AATRAGYAGGAVLAKDGADTFIVGTHSAGGNG-----VGYCSCV--SRSMLQKM  196 (199)
T ss_dssp             -CCTTEEEEE-----CCCCTTCTTCEEEEEETTEEEEEEEEEEEETT-----EEEEEEC--CHHHHHHH
T ss_pred             ccccCEEEEE-----eccCCCCcCCeEEEecCCeEEEEEEEeCCCCC-----EEEEEEc--cHHHHHHH
Confidence            0122334322     23457999999998776667799999987432     2444545  46777654

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.0085  Score=43.84  Aligned_cols=124  Identities=19%  Similarity=0.234  Sum_probs=65.6

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCccc
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV  129 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~  129 (203)
                      ..|+|||+++.+-.    +.++.|........++.+.+.|+-...      ...................         .
T Consensus       123 ~~dlavl~i~~~~~----~~~~~l~~~~~~~~G~~v~aiG~P~g~------~~tvt~~~~~~~~~~~~~~---------~  183 (249)
T d1ky9a2         123 RSDIALIQIQNPKN----LTAIKMADSDALRVGDYTVAIGNPFGL------GETVTSGIVSALGRSGLNA---------E  183 (249)
T ss_dssp             TTTEEEEEESSCCS----CCCCCBCCGGGCCTTCEEEEEECTTSS------SCEEEEEEEEEESSCC-------------
T ss_pred             chhhceeeeccccc----ceEEEcCCcCcCCcCCEEEEEeccccc------CCceeecceeecccccccC---------c
Confidence            45999999986533    446666655433468999999973211      1111111111111111000         0


Q ss_pred             ccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCC-CCCCCeEEEeCCCCHHHHHHhhcc
Q psy12782        130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCA-QQGQPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       130 ~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~-~~~~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      .....+=+     ......|.|||||+... |+  |+||.+...... .........-+....+++++.++.
T Consensus       184 ~~~~~iqt-----da~i~~GnSGGPl~n~~-G~--vIGI~t~~~~~~~~~~gi~faIP~~~~~~~~~~l~~~  247 (249)
T d1ky9a2         184 NYENFIQT-----DAAINRGNAGGALVNLN-GE--LIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEY  247 (249)
T ss_dssp             -CCCCEEE-----SCCCTTSCCCSEEECTT-SC--EEEEEECSSTTSCCCSSSEEEEEHHHHHHHHHHHHHH
T ss_pred             cccceEEE-----eeeecCCCCCceEECCC-CE--EEEEEEEEeccCCCcccEEEEEEHHHHHHHHHHHHHh
Confidence            11222221     23567899999998643 43  999999865321 111133445556666777777653

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=96.90  E-value=0.0033  Score=45.24  Aligned_cols=49  Identities=22%  Similarity=0.373  Sum_probs=33.9

Q ss_pred             CCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeC-CCCHHHHHHh
Q psy12782        144 KDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRV-AYTVDWISYI  197 (203)
Q Consensus       144 ~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v-~~~~~WI~~~  197 (203)
                      .....|.+||||+...+|+  ++||.+.+..-..   -..|+-| ..+.++|.+.
T Consensus       142 ~~t~~GnSGGPlvd~~dG~--VVGIhs~~~~~~~---~n~~~~i~~~~~~~l~~~  191 (219)
T d1lvmb_         142 IQTKDGQCGSPLVSTRDGF--IVGIHSASNFTNT---NNYFTSVPKNFMELLTNQ  191 (219)
T ss_dssp             BCCCTTCTTCEEEETTTCC--EEEEEEEEETTSS---SEEEEECCTTHHHHHHCG
T ss_pred             EEcCCCCCCCceEEcCCCE--EEEEEEeeecccc---eEEEEecCHHHHHHHhhc
Confidence            4567899999999854343  9999998754322   3457777 4467776654

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.88  E-value=0.0045  Score=44.29  Aligned_cols=54  Identities=22%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             CCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCC--------CCeEEEeCCCCHHHHHHhhcc
Q psy12782        144 KDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQG--------QPGIYHRVAYTVDWISYIMNT  200 (203)
Q Consensus       144 ~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~--------~~~v~t~v~~~~~WI~~~i~~  200 (203)
                      .....|.|||||+... |+  ++||.+.........        ......-+...++|+++.++.
T Consensus       157 ~~i~~G~SGGPv~n~~-G~--vVGI~~~~~~~~~~~~~~~~~~~gi~faIP~~~v~~~l~~l~~~  218 (221)
T d2z9ia2         157 AAINPGNSGGALVNMN-AQ--LVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELIST  218 (221)
T ss_dssp             SCCCTTCTTEEEECTT-SE--EEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHHH
T ss_pred             ecccCCCCCCccCcCC-CE--EEEEEEEEecccccccccccCccCeEEEEEHHHHHHHHHHHHHh
Confidence            4566789999999753 43  999998754321110        112345555566777776653

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.83  E-value=0.0039  Score=45.03  Aligned_cols=127  Identities=17%  Similarity=0.178  Sum_probs=60.9

Q ss_pred             CCCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCcc
Q psy12782         49 DRYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINV  128 (203)
Q Consensus        49 ~~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~  128 (203)
                      ...|+|||++..+-   ..+.++-|........++.+.+.|+-.....      ..............-..         
T Consensus       101 ~~~dlall~v~~~~---~~~~~l~l~~s~~~~~G~~V~aiG~P~g~~~------~~~~~~~~~~~~~~~~~---------  162 (228)
T d1l1ja_         101 EELDIAVIKIKASD---KKFPYLEFGDSDKVKIGEWAIAIGNPLGFQH------TVTVGVVSATNRRIPKP---------  162 (228)
T ss_dssp             TTTTEEEEEBCCSS---SCCCCCEECCGGGCCTTCEEEEEECTTSSSC------EEEEEEEEEEEEEEECT---------
T ss_pred             ccccceeeEeecCC---CCCceEEccCccccccCCcEEEEECCCCCCC------ceEeeeeeccccccccc---------
Confidence            34699999997542   2344555654433336899999998422111      01111111111000000         


Q ss_pred             cccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecCCCCCCCCCeEEEeCCCCHHHHHHhh
Q psy12782        129 VIYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGYSCAQQGQPGIYHRVAYTVDWISYIM  198 (203)
Q Consensus       129 ~~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~c~~~~~~~v~t~v~~~~~WI~~~i  198 (203)
                      .......-.  .......-.|.|||||+... |+  |+||.+....-...........+....++|++.+
T Consensus       163 ~~~~~~~~~--~~~da~i~~G~SGGPl~n~~-G~--VIGI~~~~~~~~~~~~i~faIp~~~i~~~l~~l~  227 (228)
T d1l1ja_         163 DGSGYYVGL--IQTDAAINPGNSGGPLLNIH-GE--VIGINTAIVNPQEAVNLGFAIPINTVKKFLDTIL  227 (228)
T ss_dssp             TSSCEEEEE--EEESSCCCTTTTTSEEECSS-SE--EEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGC
T ss_pred             cCcCcccce--eEEecccCCCCCCCcEECCC-CE--EEEEEEEEecCCCCCCEEEEEEHHHHHHHHHHhc
Confidence            001111111  11123456899999999643 43  9999986543222111233445555555555443

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=96.80  E-value=0.00073  Score=47.70  Aligned_cols=27  Identities=33%  Similarity=0.576  Sum_probs=21.5

Q ss_pred             CCCCcCCCCCeeEEeeCCcEEEEEEEEecC
Q psy12782        144 KDSCQGDSGGPLMMERTGRWFLIGIVSAGY  173 (203)
Q Consensus       144 ~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~  173 (203)
                      ...++||||||++..+ ++  ++||++.+.
T Consensus       136 ~~~~~GdSGGPv~~~~-g~--vvGI~sgg~  162 (198)
T d2h5ca1         136 ACMGRGDSGGSWITSA-GQ--AQGVMSGGN  162 (198)
T ss_dssp             SCCBTTCTTCEEECTT-CB--EEEEEEEEC
T ss_pred             eeeecccccccEEcCC-CE--EEEEEcccc
Confidence            5678999999999743 22  999999865

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.015  Score=40.87  Aligned_cols=100  Identities=20%  Similarity=0.186  Sum_probs=49.1

Q ss_pred             CCCeEEEEECCCcCCCCCccceecCCCCCCccCceeEEeecccccCCCCCCccCceEEEEeeeChhhHhhHhhhCCCccc
Q psy12782         50 RYDVAVLRLDRPVQYMPHIAPICLPEKGEDFLGQFGWAAGWGALQAGSRLRPKTLQAVDVPIIDNRQCERWHKSNGINVV  129 (203)
Q Consensus        50 ~~DiALl~L~~~~~~~~~i~picl~~~~~~~~~~~~~~~Gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~  129 (203)
                      ..|+||++++.+-.    +.++-+........++.+.+.|+-......      ...........  ........    .
T Consensus        88 ~~dlall~~~~~~~----~~~l~l~~~~~~~~G~~v~~iG~P~~~~~~------~~~g~~~~~~~--~~~~~~~~----~  151 (205)
T d1lcya2          88 VADIATLRIQTKEP----LPTLPLGRSADVRQGEFVVAMGSPFALQNT------ITSGIVSSAQR--PARDLGLP----Q  151 (205)
T ss_dssp             TTTEEEEECCCSSC----CCCCCBCCGGGCCTTCEEEECCCTTSSSSC------CEEEEBCSCSC--C------------
T ss_pred             ceeeEEEEecCCCC----CcEEEccccccCCCCCEEEEEECCcccCce------EeeeEEEeccc--cccccCCC----C
Confidence            45999999976533    334445443323358888888874322111      11111110000  00000000    0


Q ss_pred             ccCCeEEeeeeCCCCCCCcCCCCCeeEEeeCCcEEEEEEEEecC
Q psy12782        130 IYDEMMCAGYRGGAKDSCQGDSGGPLMMERTGRWFLIGIVSAGY  173 (203)
Q Consensus       130 ~~~~~~C~~~~~~~~~~c~~d~G~pl~~~~~~~~~lvGv~s~~~  173 (203)
                      .....+...     ...-.|.|||||+... |+  |+||.+...
T Consensus       152 ~~~~~i~~~-----~~~~~G~SGGPv~d~~-G~--vVGI~s~~~  187 (205)
T d1lcya2         152 TNVEYIQTD-----AAIDFGNAGGPLVNLD-GE--VIGVNTMKV  187 (205)
T ss_dssp             -CCCCEEES-----SCCSTTTTTSEEEETT-SC--EEEEEEEEE
T ss_pred             ccceEEEEe-----eeeCCCCCcCcEECCC-CE--EEEEEeeEc
Confidence            122233332     2445689999998754 54  999998764

>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Human rhinovirus 2 [TaxId: 12130]

Probab=80.94  E-value=2.6  Score=28.43  Aligned_cols=26  Identities=27%  Similarity=0.392  Sum_probs=20.5

Q ss_pred             CCCcCCCCCeeEEeeCCcEEEEEEEEecCC
Q psy12782        145 DSCQGDSGGPLMMERTGRWFLIGIVSAGYS  174 (203)
Q Consensus       145 ~~c~~d~G~pl~~~~~~~~~lvGv~s~~~~  174 (203)
                      ..-.|+.||||++.++    ++||-+.|.+
T Consensus       141 ~t~~g~cg~~~~~~~~----i~G~h~~g~~  166 (180)
T d1cqqa_         141 PTKSGYCGGVLYKIGQ----VLGIHVGGNG  166 (180)
T ss_dssp             CCCTTCTTCEEEETTE----EEEEEEEECS
T ss_pred             cCCCcccCCeEEECCC----EEEEEeccCC
Confidence            4557899999998654    9999998743