Psyllid ID: psy12793

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
Protein Sequence
MVLGLFLNVNKTLFPCLKSRKEGDRYLSTYLQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCRKLVVNS
Secondary Structure (PSIPRED)
ccccEEEEEccccccccccccccccccHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEEEEcccccccccccccccccccccccccEEEEEEcccccccEEEEccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEcccccccccEEEEEccccHHHHHHHHHHHHHcccccccccccccccccccEEEccccccEEEEcccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccEEccccccccEEEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccHHHHHHccccccccHHHHHHHHHHHHHcccEEEEEEEEccccccccccccccEEEEEEEEcccccccccccHHHcccccccccEEEEEEccccccHEEEEccccccccccccHHHHHHHHHHcccccccccccccccccccccccccEEEcccccccccccEEEEHHHEccccccccEEEEEccccccHHHHHHHHHHccccccccccccEEEcHHHHHHHHHcccEEEEcccccccccccHHcHHHHHHcccEEEEEccHHHHEEcccEEcccccEEEEccccccccccccccccEEEccHHHHHHHHHHccEEEcccEEEccccHHHHHHcccEEEcc
Coil and Loop (DISEMBL)
MVLGLFLNVNktlfpclksrkegdRYLSTYLQIFVRAQfnynpldddlipcaqAGIAFQIGDILQIFVRAQfnynpldddlipcaqAGIAFQIGDILQIISKDDHNWWQARKdnvagsaglipspelqEWRTACSTIdktkheqvncsifgrkkkLYKDKYLAKhnavfdqldlVTYEEVVKLPSFKRKTLVLLGAhgvgrrhikntlinkfpdkyaypvpqFITVCSVMFQIISKDDHNWWQARKdnvagsaglipspelqEWRTACSTIDktkheqgiyssfslpfsvyrrdttrsprsdeengrayyfiSHDEMMSDIAANQYLEYgksilthpsqrhIVSCRKLVVNS
Flexible Loop (DISEMBL)
MVLGLFLNVNKTlfpclksrkegDRYLSTYLQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSaglipspelQEWRTACStidktkheqvncsifgrkkKLYKDKYLAKHnavfdqldlVTYEEVVKLPSFKRKTLVllgahgvgrrhikNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSaglipspelQEWRTACSTIDktkheqgiyssfslpfsvyrrdttrsprsdeengRAYYFISHDEMMSDIAANQYLEYGKSIlthpsqrhivscrklvvns
Low Complexity Region (SEG)
MVLGLFLNVNKTLFPCLKSRKEGDRYLSTYLQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRkkklykdkylakHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCRKLVVNS
Disordered region (IsUnstruct)
*VLGLFLNVNKTLFPCLKSRKEGDRYLSTYLQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVY***************RAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCRKLV***
Disordered Region (DISOPRED)
*VLGLFLNVNKTLFPC************TYLQIFVRAQFNYNP**********************IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRK********************LVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSV****ISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSV*********************ISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCRKLVVN*
Disordered Region (DISEMBL)
MVLGLFLNVNKTLFPCLKSRKEGDRYLSTYLQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRR**********ENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCRKLVVNS
Disordered Region (DISPRO)
MVLGLFLNVNKTLFPCLKSRKEGDRYLSTYLQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTID*****QVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCRKLVVNS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLGLFLNVNKTLFPCLKSRKEGDRYLSTYLQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCRKLVVNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	352	2.2.26 [Sep-21-2011]
Q24210	898	Peripheral plasma membran	yes	N/A	0.448	0.175	0.814	2e-77
O14936	926	Peripheral plasma membran	yes	N/A	0.696	0.264	0.493	1e-63
O70589	926	Peripheral plasma membran	yes	N/A	0.576	0.219	0.574	1e-63
Q62915	909	Peripheral plasma membran	yes	N/A	0.565	0.218	0.542	1e-57
P54936	961	Protein lin-2 OS=Caenorha	no	N/A	0.448	0.164	0.614	4e-54
P49697	467	55 kDa erythrocyte membra	N/A	N/A	0.437	0.329	0.613	8e-52
P70290	466	55 kDa erythrocyte membra	no	N/A	0.443	0.334	0.622	3e-50
Q5RDW4	466	55 kDa erythrocyte membra	no	N/A	0.443	0.334	0.622	6e-50
Q5ZJ00	468	55 kDa erythrocyte membra	no	N/A	0.443	0.333	0.616	7e-50
Q00013	466	55 kDa erythrocyte membra	no	N/A	0.443	0.334	0.622	7e-50

>sp|Q24210|CSKP_DROME Peripheral plasma membrane protein CASK OS=Drosophila melanogaster GN=CASK PE=1 SV=4

 Score =  289 bits (739), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 132/162 (81%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +IFVRAQF+YNPLDD+LIPCAQAGI+FQ+GDILQIISKDDH+WWQAR D V GSAGLIPS
Sbjct: 584 EIFVRAQFDYNPLDDELIPCAQAGISFQVGDILQIISKDDHHWWQARLDTVGGSAGLIPS 643

Query: 125 PELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL- 183
           PELQEWR AC T+DKTK EQVNCSIFGRKKK  +DKYLAKHNA+FD LD+VTYEEVVK+ 
Sbjct: 644 PELQEWRIACQTVDKTKQEQVNCSIFGRKKKQCRDKYLAKHNAIFDTLDVVTYEEVVKVP 703

Query: 184 ---PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
              P+F+RKTLVLLGAHGVGRRHIKNTLI+K+PDKYAYP+P 
Sbjct: 704 VGDPNFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPH 745

May regulate transmembrane proteins that bind calcium, calmodulin, or nucleotides. Functionally modulates eag potassium channels; increases eag current and whole-cell conductance. Also regulates autophosphorylation of CaMKII.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1EC: 7

>sp|O14936|CSKP_HUMAN Peripheral plasma membrane protein CASK OS=Homo sapiens GN=CASK PE=1 SV=3

 Score =  243 bits (620), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/296 (49%), Positives = 181/296 (61%), Gaps = 51/296 (17%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLIP 123
           QI+VRAQF Y+P  DDLIPC +AGI F++GDI+QIISKDDHNWWQ + +N   G+AGLIP
Sbjct: 614 QIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLIP 673

Query: 124 SPELQEWRTACSTIDKTKHEQ-VNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVK 182
           SPELQEWR AC  ++KTK EQ  +C+ FG+KKK YKDKYLAKHNAVFDQLDLVTYEEVVK
Sbjct: 674 SPELQEWRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNAVFDQLDLVTYEEVVK 733

Query: 183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ---------------FITVC 227
           LP+FKRKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P                +    
Sbjct: 734 LPAFKRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSH 793

Query: 228 SVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSL- 286
             M Q IS +++  + + +D + G              T   TI K  HEQG+ +   + 
Sbjct: 794 DQMMQDISNNEYLEYGSHEDAMYG--------------TKLETIRKI-HEQGLIAILDVE 838

Query: 287 -------------PFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
                        PF V+    T +P  +E+       +   +  SDI    Y  Y
Sbjct: 839 PQALKVLRTAEFAPFVVFIAAPTITPGLNEDES-----LQRLQKESDILQRTYAHY 889

Multidomain scaffolding protein with a role in synaptic transmembrane protein anchoring and ion channel trafficking. Contributes to neural development and regulation of gene expression via interaction with the transcription factor TRB1. Binds to cell-surface proteins, including amyloid precursor protein, neurexins and syndecans. May mediate a link between the extracellular matrix and the actin cytoskeleton via its interaction with syndecan and with the actin/spectrin-binding protein 4.1.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O70589|CSKP_MOUSE Peripheral plasma membrane protein CASK OS=Mus musculus GN=Cask PE=1 SV=2

 Score =  243 bits (620), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 135/235 (57%), Positives = 163/235 (69%), Gaps = 32/235 (13%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLIP 123
           QI+VRAQF Y+P  DDLIPC +AGI F++GDI+QIISKDDHNWWQ + +N   G+AGLIP
Sbjct: 614 QIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLIP 673

Query: 124 SPELQEWRTACSTIDKTKHEQ-VNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVK 182
           SPELQEWR AC  ++KTK EQ  +C+ FG+KKK YKDKYLAKHNAVFDQLDLVTYEEVVK
Sbjct: 674 SPELQEWRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNAVFDQLDLVTYEEVVK 733

Query: 183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ---------------FITVC 227
           LP+FKRKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P                +    
Sbjct: 734 LPAFKRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSH 793

Query: 228 SVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYS 282
             M Q IS +++  + + +D + G              T   TI K  HEQG+ +
Sbjct: 794 DQMMQDISNNEYLEYGSHEDAMYG--------------TKLETIRKI-HEQGLIA 833

Multidomain scaffolding protein with a role in synaptic transmembrane protein anchoring and ion channel trafficking. Contributes to neural development and regulation of gene expression via interaction with the transcription factor TRB1. Binds to cell-surface proteins, including amyloid precursor protein, neurexins, and syndecans. May mediate a link between the extracellular matrix and the actin cytoskeleton via its interaction with syndecan and with the actin/spectrin-binding protein 4.1.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q62915|CSKP_RAT Peripheral plasma membrane protein CASK OS=Rattus norvegicus GN=Cask PE=1 SV=1

 Score =  224 bits (570), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 128/236 (54%), Positives = 158/236 (66%), Gaps = 37/236 (15%)

Query: 64  LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLI 122
           + I+VRAQF Y+P  DDLIPC +AGI F++GDI+QIISKDDHNWWQ + +N   G+AGLI
Sbjct: 601 VSIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLI 660

Query: 123 PSPELQEWRTACSTIDKTKHEQ-VNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVV 181
           PSPELQEWR AC  ++KTK EQ  +C+ FG+KKK YKDKYLAKHNA     DLVTYEEVV
Sbjct: 661 PSPELQEWRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNA-----DLVTYEEVV 715

Query: 182 KLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ---------------FITV 226
           KLP+FKRKTLVLLGAHGVGRRHIKNTLI K P+++AYP+P                +   
Sbjct: 716 KLPAFKRKTLVLLGAHGVGRRHIKNTLITKHPERFAYPIPHTTRPPKKDEENGKNYYFVS 775

Query: 227 CSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYS 282
              M Q IS +++  + + +D + G              T   TI K  HEQG+ +
Sbjct: 776 HDQMMQDISNNEYLEYGSHEDAMYG--------------TKLETIRKI-HEQGLIA 816

Multidomain scaffolding protein with a role in synaptic transmembrane protein anchoring and ion channel trafficking. Contributes to neural development and regulation of gene expression via interaction with the transcription factor TRB1. Binds to cell-surface proteins, including amyloid precursor protein, neurexins, and syndecans. May mediate a link between the extracellular matrix and the actin cytoskeleton via its interaction with syndecan and with the actin/spectrin-binding protein 4.1.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P54936|LIN2_CAEEL Protein lin-2 OS=Caenorhabditis elegans GN=lin-2 PE=1 SV=1

 Score =  212 bits (539), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 107/174 (61%), Positives = 131/174 (75%), Gaps = 16/174 (9%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR------------- 111
           +IFVRAQF+Y P  DDLIPC QAGI F+ GDILQ+ISKDDHNWWQAR             
Sbjct: 635 EIFVRAQFDYEPSQDDLIPCPQAGIPFKTGDILQVISKDDHNWWQARFVSSFPSIGNSSN 694

Query: 112 --KDNVAGSAGLIPSPELQEWRTACSTIDKTKHE-QVNCSIFGRKKKLYKDKYLAKHNAV 168
             + N    AGLIPSPELQEWRTAC  ++++K+    +C  F +KKK Y  KYL KH+A+
Sbjct: 695 AQRSNQQQVAGLIPSPELQEWRTACLAMERSKNTCNTHCMWFNKKKKYYTTKYLQKHSAL 754

Query: 169 FDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
           FDQLDLVTYEEV++L  ++RKTLVLLGAHGVGRRHIKNTLI++ P+++AYP+P 
Sbjct: 755 FDQLDLVTYEEVMRLSQYRRKTLVLLGAHGVGRRHIKNTLIHRHPNRFAYPIPH 808

May play a structural role in the induction of the vulva. May be required for the localization of signal transduction molecules (such as let-23 receptor) to either the basal membrane domain or the cell junctions.

Caenorhabditis elegans (taxid: 6239)

>sp|P49697|EM55_TAKRU 55 kDa erythrocyte membrane protein OS=Takifugu rubripes GN=mpp1 PE=3 SV=1

 Score =  204 bits (519), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 97/158 (61%), Positives = 127/158 (80%), Gaps = 4/158 (2%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR-KDNVAGSAGLIP 123
           ++++R QF+Y+P  DDLIPC +AG+ FQ GDI+QII+K D NWWQ R ++N A  AGLIP
Sbjct: 162 EMYMRGQFDYDPAMDDLIPCKEAGLKFQTGDIIQIINKQDPNWWQGRVENNAANFAGLIP 221

Query: 124 SPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL 183
           SPELQEWR A  +  K +    +CS FG+KKK    KYLAKH+++FDQLD+++YEEVV+L
Sbjct: 222 SPELQEWRAASKS--KAREGSQSCSPFGKKKKCKD-KYLAKHSSIFDQLDVISYEEVVRL 278

Query: 184 PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
           P+FKRKTLVL+GA GVGRRHIKN L+ K+P+K++YPVP
Sbjct: 279 PAFKRKTLVLIGAPGVGRRHIKNVLLTKYPEKFSYPVP 316

May play a role in the regulation of neutrophil polarization.

Takifugu rubripes (taxid: 31033)

>sp|P70290|EM55_MOUSE 55 kDa erythrocyte membrane protein OS=Mus musculus GN=Mpp1 PE=1 SV=1

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/159 (62%), Positives = 124/159 (77%), Gaps = 3/159 (1%)

Query: 64  LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAG-SAGLI 122
           LQ+F+RAQF+Y+P  D+LIPC +AG+ F  GDI+QII+KDD NWWQ R +  +  SAGLI
Sbjct: 159 LQMFMRAQFDYDPQKDNLIPCKEAGLKFVTGDIIQIINKDDSNWWQGRVEGSSKESAGLI 218

Query: 123 PSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVK 182
           PSPELQEWR A S       E  +CS FG+KKK    KYLAKH+++FDQLD+V+YEEVV+
Sbjct: 219 PSPELQEWRVA-SVAHSAPSEAPSCSPFGKKKKCKD-KYLAKHSSIFDQLDVVSYEEVVR 276

Query: 183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
           LP+FKRKTLVL+GA GVGR HIKN L++  P+K+AYP P
Sbjct: 277 LPAFKRKTLVLIGASGVGRSHIKNGLLSHNPEKFAYPAP 315

Essential regulator of neutrophil polarity. Regulates neutrophil polarization by regulating AKT1 phosphorylation through a mechanism that is independent of PIK3CG activity.

Mus musculus (taxid: 10090)

>sp|Q5RDW4|EM55_PONAB 55 kDa erythrocyte membrane protein OS=Pongo abelii GN=MPP1 PE=2 SV=1

 Score =  198 bits (503), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 99/159 (62%), Positives = 125/159 (78%), Gaps = 3/159 (1%)

Query: 64  LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAG-SAGLI 122
           LQ+F+RAQF+Y+P  D+LIPC +AG+ F  GDI+QII+KDD NWWQ R +  +  SAGLI
Sbjct: 159 LQMFMRAQFDYDPKKDNLIPCKEAGLKFATGDIIQIINKDDSNWWQGRVEGSSKESAGLI 218

Query: 123 PSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVK 182
           PSPELQEWR A S       E  +CS FG+KKK    KYLAKH+++FDQLD+V+YEEVV+
Sbjct: 219 PSPELQEWRVA-SVAQSAPSEAPSCSPFGKKKKYKD-KYLAKHSSIFDQLDVVSYEEVVR 276

Query: 183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
           LP+FKRKTLVL+GA GVGR HIKN L+++ P+K+ YPVP
Sbjct: 277 LPAFKRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVP 315

Essential regulator of neutrophil polarity. Regulates neutrophil polarization by regulating AKT1 phosphorylation through a mechanism that is independent of PIK3CG activity.

Pongo abelii (taxid: 9601)

>sp|Q5ZJ00|EM55_CHICK 55 kDa erythrocyte membrane protein OS=Gallus gallus GN=MPP1 PE=2 SV=1

 Score =  197 bits (502), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 98/159 (61%), Positives = 125/159 (78%), Gaps = 3/159 (1%)

Query: 64  LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAG-SAGLI 122
           LQ+F+RAQF+Y+P  D+LIPC +AG+ FQ GD++QII+KDD NWWQ R +     SAGLI
Sbjct: 161 LQMFMRAQFDYDPKKDNLIPCKEAGLKFQTGDVIQIINKDDSNWWQGRVEGSGTESAGLI 220

Query: 123 PSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVK 182
           PSPELQEWR A S    ++ E  +CS FG+KKK    KYLAKH+++FDQLD+V+YEEVV+
Sbjct: 221 PSPELQEWRVA-SVTQSSQSEAQSCSPFGKKKKYKD-KYLAKHSSIFDQLDVVSYEEVVR 278

Query: 183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
           LP+FKRKTLVL+GA GVGR HIKN L++  P+K+ YP P
Sbjct: 279 LPAFKRKTLVLIGASGVGRSHIKNALLSNNPEKFMYPPP 317

May play a role in the regulation of neutrophil polarization.

Gallus gallus (taxid: 9031)

>sp|Q00013|EM55_HUMAN 55 kDa erythrocyte membrane protein OS=Homo sapiens GN=MPP1 PE=1 SV=2

 Score =  197 bits (502), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 99/159 (62%), Positives = 125/159 (78%), Gaps = 3/159 (1%)

Query: 64  LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAG-SAGLI 122
           LQ+F+RAQF+Y+P  D+LIPC +AG+ F  GDI+QII+KDD NWWQ R +  +  SAGLI
Sbjct: 159 LQMFMRAQFDYDPKKDNLIPCKEAGLKFATGDIIQIINKDDSNWWQGRVEGSSKESAGLI 218

Query: 123 PSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVK 182
           PSPELQEWR A S       E  +CS FG+KKK    KYLAKH+++FDQLD+V+YEEVV+
Sbjct: 219 PSPELQEWRVA-SMAQSAPSEAPSCSPFGKKKKYKD-KYLAKHSSIFDQLDVVSYEEVVR 276

Query: 183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
           LP+FKRKTLVL+GA GVGR HIKN L+++ P+K+ YPVP
Sbjct: 277 LPAFKRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVP 315

Essential regulator of neutrophil polarity. Regulates neutrophil polarization by regulating AKT1 phosphorylation through a mechanism that is independent of PIK3CG activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
189235646	893	PREDICTED: similar to AGAP001683-PA [Tri	0.448	0.176	0.839	2e-76
270003442	966	hypothetical protein TcasGA2_TC002673 [T	0.446	0.162	0.844	2e-76
198450831	1027	GA19796 [Drosophila pseudoobscura pseudo	0.448	0.153	0.814	1e-75
195400208	1039	GJ14160 [Drosophila virilis] gi|19414227	0.446	0.151	0.826	1e-75
24648808	898	CASK ortholog, isoform B [Drosophila mel	0.448	0.175	0.814	2e-75
442620344	929	CASK ortholog, isoform H [Drosophila mel	0.448	0.170	0.814	2e-75
195453154	608	GK13019 [Drosophila willistoni] gi|19416	0.446	0.258	0.826	2e-75
195036272	596	GH18714 [Drosophila grimshawi] gi|193893	0.446	0.263	0.826	2e-75
28317033	833	RE09582p [Drosophila melanogaster]	0.448	0.189	0.814	2e-75
195110523	594	GI22862 [Drosophila mojavensis] gi|19391	0.446	0.264	0.826	3e-75

>gi|189235646|ref|XP_968349.2| PREDICTED: similar to AGAP001683-PA [Tribolium castaneum]

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/162 (83%), Positives = 149/162 (91%), Gaps = 4/162 (2%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +IFVRAQF+Y+PL+DDLIPCAQAGIAF+ GDILQIISKDDH+WWQARKDN AGSAGLIPS
Sbjct: 579 EIFVRAQFDYDPLEDDLIPCAQAGIAFKTGDILQIISKDDHHWWQARKDNSAGSAGLIPS 638

Query: 125 PELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL- 183
           PELQEWR AC+ ++KTK EQVNCSIFGRKKK YKDKYLAKHNAVFDQLDLVTYEEVVKL 
Sbjct: 639 PELQEWRAACAAMEKTKQEQVNCSIFGRKKKQYKDKYLAKHNAVFDQLDLVTYEEVVKLP 698

Query: 184 ---PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
              P+F+RKTLVLLGAHGVGRRHIKNTLI K PD+YAYP+P 
Sbjct: 699 MTDPAFQRKTLVLLGAHGVGRRHIKNTLIAKHPDQYAYPIPH 740

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270003442|gb|EEZ99889.1| hypothetical protein TcasGA2_TC002673 [Tribolium castaneum]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/161 (84%), Positives = 148/161 (91%), Gaps = 4/161 (2%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
           IFVRAQF+Y+PL+DDLIPCAQAGIAF+ GDILQIISKDDH+WWQARKDN AGSAGLIPSP
Sbjct: 653 IFVRAQFDYDPLEDDLIPCAQAGIAFKTGDILQIISKDDHHWWQARKDNSAGSAGLIPSP 712

Query: 126 ELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL-- 183
           ELQEWR AC+ ++KTK EQVNCSIFGRKKK YKDKYLAKHNAVFDQLDLVTYEEVVKL  
Sbjct: 713 ELQEWRAACAAMEKTKQEQVNCSIFGRKKKQYKDKYLAKHNAVFDQLDLVTYEEVVKLPM 772

Query: 184 --PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
             P+F+RKTLVLLGAHGVGRRHIKNTLI K PD+YAYP+P 
Sbjct: 773 TDPAFQRKTLVLLGAHGVGRRHIKNTLIAKHPDQYAYPIPH 813

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198450831|ref|XP_001358148.2| GA19796 [Drosophila pseudoobscura pseudoobscura] gi|198131210|gb|EAL27285.2| GA19796 [Drosophila pseudoobscura pseudoobscura]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 132/162 (81%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +IFVRAQF+YNPLDD+LIPCAQAGI+FQ+GDILQIISKDDH+WWQAR D V GSAGLIPS
Sbjct: 713 EIFVRAQFDYNPLDDELIPCAQAGISFQVGDILQIISKDDHHWWQARLDTVGGSAGLIPS 772

Query: 125 PELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL- 183
           PELQEWR AC T+DKTK EQVNCSIFGRKKK  +DKYLAKHNA+FD LD+VTYEEVVK+ 
Sbjct: 773 PELQEWRIACQTVDKTKQEQVNCSIFGRKKKQCRDKYLAKHNAIFDNLDVVTYEEVVKVP 832

Query: 184 ---PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
              P+F+RKTLVLLGAHGVGRRHIKNTLI+K+PDKYAYP+P 
Sbjct: 833 VGDPNFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPH 874

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195400208|ref|XP_002058710.1| GJ14160 [Drosophila virilis] gi|194142270|gb|EDW58678.1| GJ14160 [Drosophila virilis]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 147/161 (91%), Gaps = 4/161 (2%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
           IFVRAQF+YNPLDD+LIPCAQAGIAFQ+GDILQIISKDDH+WWQAR D V GSAGLIPSP
Sbjct: 726 IFVRAQFDYNPLDDELIPCAQAGIAFQVGDILQIISKDDHHWWQARIDTVGGSAGLIPSP 785

Query: 126 ELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL-- 183
           ELQEWR AC T+DKTK EQVNCSIFGRKKK  +DKYLAKHNA+FD LD+VTYEEVVK+  
Sbjct: 786 ELQEWRIACQTVDKTKQEQVNCSIFGRKKKQCRDKYLAKHNAIFDTLDVVTYEEVVKVPV 845

Query: 184 --PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
             P+F+RKTLVLLGAHGVGRRHIKNTLI+K+PDKYAYP+P 
Sbjct: 846 GDPNFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPH 886

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24648808|ref|NP_524441.2| CASK ortholog, isoform B [Drosophila melanogaster] gi|34223738|sp|Q24210.4|CSKP_DROME RecName: Full=Peripheral plasma membrane protein CASK; Short=dCASK; AltName: Full=Calcium/calmodulin-dependent protein kinase; Short=CAKI; Short=Camguk gi|23171917|gb|AAF55922.2| CASK ortholog, isoform B [Drosophila melanogaster] gi|209529753|gb|ACI49771.1| FI02017p [Drosophila melanogaster]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/162 (81%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +IFVRAQF+YNPLDD+LIPCAQAGI+FQ+GDILQIISKDDH+WWQAR D V GSAGLIPS
Sbjct: 584 EIFVRAQFDYNPLDDELIPCAQAGISFQVGDILQIISKDDHHWWQARLDTVGGSAGLIPS 643

Query: 125 PELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL- 183
           PELQEWR AC T+DKTK EQVNCSIFGRKKK  +DKYLAKHNA+FD LD+VTYEEVVK+ 
Sbjct: 644 PELQEWRIACQTVDKTKQEQVNCSIFGRKKKQCRDKYLAKHNAIFDTLDVVTYEEVVKVP 703

Query: 184 ---PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
              P+F+RKTLVLLGAHGVGRRHIKNTLI+K+PDKYAYP+P 
Sbjct: 704 VGDPNFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPH 745

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442620344|ref|NP_001262811.1| CASK ortholog, isoform H [Drosophila melanogaster] gi|440217720|gb|AGB96191.1| CASK ortholog, isoform H [Drosophila melanogaster]

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/162 (81%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +IFVRAQF+YNPLDD+LIPCAQAGI+FQ+GDILQIISKDDH+WWQAR D V GSAGLIPS
Sbjct: 584 EIFVRAQFDYNPLDDELIPCAQAGISFQVGDILQIISKDDHHWWQARLDTVGGSAGLIPS 643

Query: 125 PELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL- 183
           PELQEWR AC T+DKTK EQVNCSIFGRKKK  +DKYLAKHNA+FD LD+VTYEEVVK+ 
Sbjct: 644 PELQEWRIACQTVDKTKQEQVNCSIFGRKKKQCRDKYLAKHNAIFDTLDVVTYEEVVKVP 703

Query: 184 ---PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
              P+F+RKTLVLLGAHGVGRRHIKNTLI+K+PDKYAYP+P 
Sbjct: 704 VGDPNFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPH 745

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195453154|ref|XP_002073662.1| GK13019 [Drosophila willistoni] gi|194169747|gb|EDW84648.1| GK13019 [Drosophila willistoni]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 147/161 (91%), Gaps = 4/161 (2%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
           IFVRAQF+YNPLDD+LIPCAQAGIAFQ+GDILQIISKDDH+WWQAR D V GSAGLIPSP
Sbjct: 295 IFVRAQFDYNPLDDELIPCAQAGIAFQVGDILQIISKDDHHWWQARLDTVGGSAGLIPSP 354

Query: 126 ELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL-- 183
           ELQEWR AC T+DKTK EQVNCSIFGRKKK  +DKYLAKHNA+FD LD+VTYEEVVK+  
Sbjct: 355 ELQEWRIACQTVDKTKQEQVNCSIFGRKKKQCRDKYLAKHNAIFDTLDVVTYEEVVKVPV 414

Query: 184 --PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
             P+F+RKTLVLLGAHGVGRRHIKNTLI+K+PDKYAYP+P 
Sbjct: 415 GDPNFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPH 455

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195036272|ref|XP_001989595.1| GH18714 [Drosophila grimshawi] gi|193893791|gb|EDV92657.1| GH18714 [Drosophila grimshawi]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 147/161 (91%), Gaps = 4/161 (2%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
           IFVRAQF+YNPLDD+LIPCAQAGIAFQ+GDILQIISKDDH+WWQAR D V GSAGLIPSP
Sbjct: 283 IFVRAQFDYNPLDDELIPCAQAGIAFQVGDILQIISKDDHHWWQARIDTVGGSAGLIPSP 342

Query: 126 ELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL-- 183
           ELQEWR AC T+DKTK EQVNCSIFGRKKK  +DKYLAKHNA+FD LD+VTYEEVVK+  
Sbjct: 343 ELQEWRIACQTVDKTKQEQVNCSIFGRKKKPCRDKYLAKHNAIFDTLDVVTYEEVVKVPV 402

Query: 184 --PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
             P+F+RKTLVLLGAHGVGRRHIKNTLI+K+PDKYAYP+P 
Sbjct: 403 GDPNFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPH 443

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28317033|gb|AAO39536.1| RE09582p [Drosophila melanogaster]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/162 (81%), Positives = 148/162 (91%), Gaps = 4/162 (2%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +IFVRAQF+YNPLDD+LIPCAQAGI+FQ+GDILQIISKDDH+WWQAR D V GSAGLIPS
Sbjct: 519 EIFVRAQFDYNPLDDELIPCAQAGISFQVGDILQIISKDDHHWWQARLDTVGGSAGLIPS 578

Query: 125 PELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL- 183
           PELQEWR AC T+DKTK EQVNCSIFGRKKK  +DKYLAKHNA+FD LD+VTYEEVVK+ 
Sbjct: 579 PELQEWRIACQTVDKTKQEQVNCSIFGRKKKQCRDKYLAKHNAIFDTLDVVTYEEVVKVP 638

Query: 184 ---PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
              P+F+RKTLVLLGAHGVGRRHIKNTLI+K+PDKYAYP+P 
Sbjct: 639 VGDPNFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPH 680

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195110523|ref|XP_001999829.1| GI22862 [Drosophila mojavensis] gi|193916423|gb|EDW15290.1| GI22862 [Drosophila mojavensis]

 Score =  288 bits (737), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 133/161 (82%), Positives = 147/161 (91%), Gaps = 4/161 (2%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
           IFVRAQF+YNPLDD+LIPCAQAGIAFQ+GDILQIISKDDH+WWQAR D V GSAGLIPSP
Sbjct: 281 IFVRAQFDYNPLDDELIPCAQAGIAFQVGDILQIISKDDHHWWQARIDTVGGSAGLIPSP 340

Query: 126 ELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL-- 183
           ELQEWR AC T+DKTK EQVNCSIFGRKKK  +DKYLAKHNA+FD LD+VTYEEVVK+  
Sbjct: 341 ELQEWRIACQTVDKTKQEQVNCSIFGRKKKQCRDKYLAKHNAIFDTLDVVTYEEVVKVPV 400

Query: 184 --PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
             P+F+RKTLVLLGAHGVGRRHIKNTLI+K+PDKYAYP+P 
Sbjct: 401 GDPNFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIPH 441

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	352
FB|FBgn0013759	898	CASK "CASK ortholog" [Drosophi	0.446	0.174	0.763	2.5e-79
UNIPROTKB|F1RX15	799	CASK "Uncharacterized protein"	0.446	0.196	0.691	1.2e-71
UNIPROTKB|J9NZ27	897	CASK "Uncharacterized protein"	0.446	0.175	0.691	9.5e-71
UNIPROTKB|E1BWL4	920	CASK "Uncharacterized protein"	0.446	0.170	0.691	1.5e-70
UNIPROTKB|O14936	926	CASK "Peripheral plasma membra	0.446	0.169	0.691	1.6e-70
MGI|MGI:1309489	926	Cask "calcium/calmodulin-depen	0.446	0.169	0.691	1.6e-70
UNIPROTKB|A5D7B9	908	CASK "CASK protein" [Bos tauru	0.448	0.174	0.681	3.4e-70
UNIPROTKB|K7GSB2	908	CASK "Uncharacterized protein"	0.448	0.174	0.681	3.4e-70
UNIPROTKB|D4A8M2	920	Cask "Peripheral plasma membra	0.446	0.170	0.685	4.2e-70
UNIPROTKB|E2RLG1	921	CASK "Uncharacterized protein"	0.431	0.165	0.660	8.8e-66

FB|FBgn0013759 CASK "CASK ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 664 (238.8 bits), Expect = 2.5e-79, Sum P(2) = 2.5e-79
 Identities = 123/161 (76%), Positives = 138/161 (85%)

Query:    65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             +IFVRAQF+YNPLDD+LIPCAQAGI+FQ+GDILQIISKDDH+WWQAR D V GSAGLIPS
Sbjct:   584 EIFVRAQFDYNPLDDELIPCAQAGISFQVGDILQIISKDDHHWWQARLDTVGGSAGLIPS 643

Query:   125 PELQEWRTACSTIDKTKHEQVNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVKLP 184
             PELQEWR AC T+DKTK EQVNCSIFGR            HNA+FD LD+VTYEEVVK+P
Sbjct:   644 PELQEWRIACQTVDKTKQEQVNCSIFGRKKKQCRDKYLAKHNAIFDTLDVVTYEEVVKVP 703

Query:   185 ----SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
                 +F+RKTLVLLGAHGVGRRHIKNTLI+K+PDKYAYP+P
Sbjct:   704 VGDPNFQRKTLVLLGAHGVGRRHIKNTLISKYPDKYAYPIP 744

GO:0007628 "adult walking behavior" evidence=IMP

GO:0005954 "calcium- and calmodulin-dependent protein kinase complex" evidence=ISS

GO:0004683 "calmodulin-dependent protein kinase activity" evidence=ISS;IDA

GO:0016080 "synaptic vesicle targeting" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016081 "synaptic vesicle docking involved in exocytosis" evidence=NAS

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0007155 "cell adhesion" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0046928 "regulation of neurotransmitter secretion" evidence=IDA

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0008049 "male courtship behavior" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|F1RX15 CASK "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 593 (213.8 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
 Identities = 110/159 (69%), Positives = 128/159 (80%)

Query:    65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLIP 123
             QI+VRAQF Y+P  DDLIPC +AGI F++GDI+QIISKDDHNWWQ + +N   G+AGLIP
Sbjct:   487 QIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLIP 546

Query:   124 SPELQEWRTACSTIDKTKHEQ-VNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVK 182
             SPELQEWR AC  ++KTK EQ  +C+ FG+            HNAVFDQLDLVTYEEVVK
Sbjct:   547 SPELQEWRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNAVFDQLDLVTYEEVVK 606

Query:   183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
             LP+FKRKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P
Sbjct:   607 LPAFKRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 645

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|J9NZ27 CASK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 593 (213.8 bits), Expect = 9.5e-71, Sum P(2) = 9.5e-71
 Identities = 110/159 (69%), Positives = 128/159 (80%)

Query:    65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLIP 123
             QI+VRAQF Y+P  DDLIPC +AGI F++GDI+QIISKDDHNWWQ + +N   G+AGLIP
Sbjct:   585 QIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLIP 644

Query:   124 SPELQEWRTACSTIDKTKHEQ-VNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVK 182
             SPELQEWR AC  ++KTK EQ  +C+ FG+            HNAVFDQLDLVTYEEVVK
Sbjct:   645 SPELQEWRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNAVFDQLDLVTYEEVVK 704

Query:   183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
             LP+FKRKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P
Sbjct:   705 LPAFKRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 743

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|E1BWL4 CASK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 593 (213.8 bits), Expect = 1.5e-70, Sum P(2) = 1.5e-70
 Identities = 110/159 (69%), Positives = 128/159 (80%)

Query:    65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLIP 123
             QI+VRAQF Y+P  DDLIPC +AGI F++GDI+QIISKDDHNWWQ + +N   G+AGLIP
Sbjct:   608 QIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLIP 667

Query:   124 SPELQEWRTACSTIDKTKHEQ-VNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVK 182
             SPELQEWR AC  ++KTK EQ  +C+ FG+            HNAVFDQLDLVTYEEVVK
Sbjct:   668 SPELQEWRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNAVFDQLDLVTYEEVVK 727

Query:   183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
             LP+FKRKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P
Sbjct:   728 LPAFKRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 766

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0001953 "negative regulation of cell-matrix adhesion" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005652 "nuclear lamina" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0010839 "negative regulation of keratinocyte proliferation" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0042043 "neurexin family protein binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0061045 "negative regulation of wound healing" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0090280 "positive regulation of calcium ion import" evidence=IEA

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IEA

UNIPROTKB|O14936 CASK "Peripheral plasma membrane protein CASK" [Homo sapiens (taxid:9606)]

 Score = 593 (213.8 bits), Expect = 1.6e-70, Sum P(2) = 1.6e-70
 Identities = 110/159 (69%), Positives = 128/159 (80%)

Query:    65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLIP 123
             QI+VRAQF Y+P  DDLIPC +AGI F++GDI+QIISKDDHNWWQ + +N   G+AGLIP
Sbjct:   614 QIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLIP 673

Query:   124 SPELQEWRTACSTIDKTKHEQ-VNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVK 182
             SPELQEWR AC  ++KTK EQ  +C+ FG+            HNAVFDQLDLVTYEEVVK
Sbjct:   674 SPELQEWRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNAVFDQLDLVTYEEVVK 733

Query:   183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
             LP+FKRKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P
Sbjct:   734 LPAFKRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 772

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0042043 "neurexin family protein binding" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0090280 "positive regulation of calcium ion import" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0004385 "guanylate kinase activity" evidence=TAS

GO:0007155 "cell adhesion" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042734 "presynaptic membrane" evidence=ISS

GO:0060170 "cilium membrane" evidence=ISS

GO:0005604 "basement membrane" evidence=IDA

GO:0016363 "nuclear matrix" evidence=IDA

GO:0005652 "nuclear lamina" evidence=IDA

GO:0010839 "negative regulation of keratinocyte proliferation" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005911 "cell-cell junction" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IMP

GO:0061045 "negative regulation of wound healing" evidence=IMP

GO:0001953 "negative regulation of cell-matrix adhesion" evidence=IMP

MGI|MGI:1309489 Cask "calcium/calmodulin-dependent serine protein kinase (MAGUK family)" [Mus musculus (taxid:10090)]

 Score = 593 (213.8 bits), Expect = 1.6e-70, Sum P(2) = 1.6e-70
 Identities = 110/159 (69%), Positives = 128/159 (80%)

Query:    65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLIP 123
             QI+VRAQF Y+P  DDLIPC +AGI F++GDI+QIISKDDHNWWQ + +N   G+AGLIP
Sbjct:   614 QIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLIP 673

Query:   124 SPELQEWRTACSTIDKTKHEQ-VNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVK 182
             SPELQEWR AC  ++KTK EQ  +C+ FG+            HNAVFDQLDLVTYEEVVK
Sbjct:   674 SPELQEWRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNAVFDQLDLVTYEEVVK 733

Query:   183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
             LP+FKRKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P
Sbjct:   734 LPAFKRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 772

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001953 "negative regulation of cell-matrix adhesion" evidence=ISO

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005652 "nuclear lamina" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005911 "cell-cell junction" evidence=ISO;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0010839 "negative regulation of keratinocyte proliferation" evidence=ISO

GO:0016020 "membrane" evidence=ISO;IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0016363 "nuclear matrix" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0042043 "neurexin family protein binding" evidence=ISO;IDA

GO:0042734 "presynaptic membrane" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0045202 "synapse" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

GO:0060170 "cilium membrane" evidence=ISO

GO:0061045 "negative regulation of wound healing" evidence=ISO

GO:0070509 "calcium ion import" evidence=IMP

GO:0090280 "positive regulation of calcium ion import" evidence=IDA

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=ISO

GO:0097060 "synaptic membrane" evidence=ISO

UNIPROTKB|A5D7B9 CASK "CASK protein" [Bos taurus (taxid:9913)]

 Score = 589 (212.4 bits), Expect = 3.4e-70, Sum P(2) = 3.4e-70
 Identities = 109/160 (68%), Positives = 128/160 (80%)

Query:    64 LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLI 122
             + I+VRAQF Y+P  DDLIPC +AGI F++GDI+QIISKDDHNWWQ + +N   G+AGLI
Sbjct:   595 VSIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLI 654

Query:   123 PSPELQEWRTACSTIDKTKHEQ-VNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVV 181
             PSPELQEWR AC  ++KTK EQ  +C+ FG+            HNAVFDQLDLVTYEEVV
Sbjct:   655 PSPELQEWRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNAVFDQLDLVTYEEVV 714

Query:   182 KLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
             KLP+FKRKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P
Sbjct:   715 KLPAFKRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 754

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IEA

GO:0090280 "positive regulation of calcium ion import" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0061045 "negative regulation of wound healing" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0042043 "neurexin family protein binding" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0010839 "negative regulation of keratinocyte proliferation" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005652 "nuclear lamina" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0001953 "negative regulation of cell-matrix adhesion" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|K7GSB2 CASK "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 589 (212.4 bits), Expect = 3.4e-70, Sum P(2) = 3.4e-70
 Identities = 109/160 (68%), Positives = 128/160 (80%)

Query:    64 LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLI 122
             + I+VRAQF Y+P  DDLIPC +AGI F++GDI+QIISKDDHNWWQ + +N   G+AGLI
Sbjct:   595 VSIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLI 654

Query:   123 PSPELQEWRTACSTIDKTKHEQ-VNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVV 181
             PSPELQEWR AC  ++KTK EQ  +C+ FG+            HNAVFDQLDLVTYEEVV
Sbjct:   655 PSPELQEWRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNAVFDQLDLVTYEEVV 714

Query:   182 KLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
             KLP+FKRKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P
Sbjct:   715 KLPAFKRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 754

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|D4A8M2 Cask "Peripheral plasma membrane protein CASK" [Rattus norvegicus (taxid:10116)]

 Score = 589 (212.4 bits), Expect = 4.2e-70, Sum P(2) = 4.2e-70
 Identities = 109/159 (68%), Positives = 128/159 (80%)

Query:    65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLIP 123
             QI+VRAQF Y+P  DDLIPC +AGI F++GDI+QIISKDDHNWWQ + +N   G+AGLIP
Sbjct:   608 QIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLIP 667

Query:   124 SPELQEWRTACSTIDKTKHEQ-VNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVK 182
             SPELQEWR AC  ++KTK EQ  +C+ FG+            HNAVFDQLDLVTYEEVVK
Sbjct:   668 SPELQEWRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNAVFDQLDLVTYEEVVK 727

Query:   183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
             LP+FKRKTLVLLGAHGVGRRHIKNTLI K P+++AYP+P
Sbjct:   728 LPAFKRKTLVLLGAHGVGRRHIKNTLITKHPERFAYPIP 766

GO:0001953 "negative regulation of cell-matrix adhesion" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005652 "nuclear lamina" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0010839 "negative regulation of keratinocyte proliferation" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0042043 "neurexin family protein binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0061045 "negative regulation of wound healing" evidence=IEA

GO:0070509 "calcium ion import" evidence=IEA

GO:0090280 "positive regulation of calcium ion import" evidence=IEA

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=IEA

UNIPROTKB|E2RLG1 CASK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 551 (199.0 bits), Expect = 8.8e-66, Sum P(2) = 8.8e-66
 Identities = 105/159 (66%), Positives = 123/159 (77%)

Query:    65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLIP 123
             QI+VRAQF Y+P  DDLIPC +AGI F++GDI+QIISKDDHNWWQ + +N   G+AGLIP
Sbjct:   614 QIYVRAQFEYDPAKDDLIPCKEAGIRFRVGDIIQIISKDDHNWWQGKLENSKNGTAGLIP 673

Query:   124 SPELQEWRTACSTIDKTKHEQ-VNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVK 182
             SPELQEWR AC  ++KTK EQ  +C+ FG+            HNA     DLVTYEEVVK
Sbjct:   674 SPELQEWRVACIAMEKTKQEQQASCTWFGKKKKQYKDKYLAKHNA-----DLVTYEEVVK 728

Query:   183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
             LP+FKRKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P
Sbjct:   729 LPAFKRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 767

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q62915	CSKP_RAT	2, ., 7, ., 1, 1, ., 1	0.5423	0.5653	0.2189	yes	N/A
Q24210	CSKP_DROME	2, ., 7, ., 1, 1, ., 1, 7	0.8148	0.4488	0.1759	yes	N/A
O70589	CSKP_MOUSE	2, ., 7, ., 1, 1, ., 1	0.5744	0.5767	0.2192	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	352
cd12081	62	cd12081, SH3_CASK, Src Homology 3 domain of Calciu	2e-36
cd12035	62	cd12035, SH3_MPP1-like, Src Homology 3 domain of M	1e-34
cd11862	61	cd11862, SH3_MPP, Src Homology 3 domain of Membran	3e-29
cd12080	62	cd12080, SH3_MPP1, Src Homology 3 domain of Membra	2e-27
cd12036	63	cd12036, SH3_MPP5, Src Homology 3 domain of Membra	2e-19
cd12037	59	cd12037, SH3_MPP2, Src Homology 3 domain of Membra	8e-19
cd12038	61	cd12038, SH3_MPP6, Src Homology 3 domain of Membra	1e-18
cd12034	61	cd12034, SH3_MPP4, Src Homology 3 domain of Membra	4e-18
cd12033	61	cd12033, SH3_MPP7, Src Homology 3 domain of Membra	7e-18
cd12039	62	cd12039, SH3_MPP3, Src Homology 3 domain of Membra	1e-15
cd12081	62	cd12081, SH3_CASK, Src Homology 3 domain of Calciu	7e-13
cd12035	62	cd12035, SH3_MPP1-like, Src Homology 3 domain of M	2e-12
cd11861	61	cd11861, SH3_DLG-like, Src Homology 3 domain of Di	1e-10
pfam00625	183	pfam00625, Guanylate_kin, Guanylate kinase	4e-10
smart00326	56	smart00326, SH3, Src homology 3 domains	4e-10
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	5e-10
cd00071	137	cd00071, GMPK, Guanosine monophosphate kinase (GMP	1e-09
cd12080	62	cd12080, SH3_MPP1, Src Homology 3 domain of Membra	3e-09
TIGR03263	179	TIGR03263, guanyl_kin, guanylate kinase	3e-09
cd11862	61	cd11862, SH3_MPP, Src Homology 3 domain of Membran	6e-09
smart00072	174	smart00072, GuKc, Guanylate kinase homologues	7e-09
cd12032	74	cd12032, SH3_DLG2, Src Homology 3 domain of Disks	1e-08
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	1e-08
cd12031	67	cd12031, SH3_DLG1, Src Homology 3 domain of Disks	1e-08
PRK00300	205	PRK00300, gmk, guanylate kinase; Provisional	2e-08
COG0194	191	COG0194, Gmk, Guanylate kinase [Nucleotide transpo	3e-08
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	3e-08
pfam00625	183	pfam00625, Guanylate_kin, Guanylate kinase	7e-08
cd12029	67	cd12029, SH3_DLG3, Src Homology 3 domain of Disks	1e-07
pfam00018	47	pfam00018, SH3_1, SH3 domain	7e-07
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	3e-06
cd11855	55	cd11855, SH3_Sho1p, Src homology 3 domain of High	3e-06
cd11863	62	cd11863, SH3_CACNB, Src Homology 3 domain of Volta	6e-06
cd12041	68	cd12041, SH3_CACNB1, Src Homology 3 domain of Volt	7e-06
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	2e-05
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	2e-05
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	3e-05
cd12040	69	cd12040, SH3_CACNB2, Src Homology 3 domain of Volt	4e-05
cd12030	66	cd12030, SH3_DLG4, Src Homology 3 domain of Disks	5e-05
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	9e-05
cd12042	68	cd12042, SH3_CACNB3, Src Homology 3 domain of Volt	1e-04
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	1e-04
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	2e-04
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	2e-04
cd12038	61	cd12038, SH3_MPP6, Src Homology 3 domain of Membra	3e-04
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	3e-04
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	4e-04
cd12043	68	cd12043, SH3_CACNB4, Src Homology 3 domain of Volt	4e-04
cd12036	63	cd12036, SH3_MPP5, Src Homology 3 domain of Membra	5e-04
cd12037	59	cd12037, SH3_MPP2, Src Homology 3 domain of Membra	5e-04
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	5e-04
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	6e-04
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	7e-04
cd12034	61	cd12034, SH3_MPP4, Src Homology 3 domain of Membra	0.001
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	0.001
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	0.002
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	0.002
cd12033	61	cd12033, SH3_MPP7, Src Homology 3 domain of Membra	0.003
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	0.003
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	0.003
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	0.003
PLN02772	398	PLN02772, PLN02772, guanylate kinase	0.003
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	0.003
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	0.004
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	0.004

>gnl|CDD|213014 cd12081, SH3_CASK, Src Homology 3 domain of Calcium/calmodulin-dependent Serine protein Kinase

 Score =  125 bits (315), Expect = 2e-36
 Identities = 47/62 (75%), Positives = 54/62 (87%), Gaps = 1/62 (1%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDN-VAGSAGLIPSP 125
           +VRAQF Y+PL DDLIPC QAGI F++GDILQIISKDDHNWWQA+ +N   G+AGLIPSP
Sbjct: 1   YVRAQFEYDPLKDDLIPCKQAGIRFRVGDILQIISKDDHNWWQAKLENSKNGTAGLIPSP 60

Query: 126 EL 127
           EL
Sbjct: 61  EL 62

CASK is a scaffolding protein that is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. CASK interacts with many different binding partners including parkin, neurexin, syndecans, calcium channel proteins, caskin, among others, to perform specific functions in different subcellular locations. Disruption of the CASK gene in mice results in neonatal lethality while mutations in the human gene have been associated with X-linked mental retardation. Drosophila CASK is associated with both pre- and postsynaptic membranes and is crucial in synaptic transmission and vesicle cycling. CASK contains an N-terminal calmodulin-dependent kinase (CaMK)-like domain, two L27 domains, followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212968 cd12035, SH3_MPP1-like, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)-like proteins

 Score =  121 bits (304), Expect = 1e-34
 Identities = 47/62 (75%), Positives = 52/62 (83%), Gaps = 1/62 (1%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-GSAGLIPSP 125
           +VRAQF+Y+P  DDLIPC QAGIAF+ GDILQIISKDDHNWWQARK   +   AGLIPSP
Sbjct: 1   YVRAQFDYDPSKDDLIPCQQAGIAFKTGDILQIISKDDHNWWQARKPGASKEPAGLIPSP 60

Query: 126 EL 127
           EL
Sbjct: 61  EL 62

This subfamily includes MPP1, CASK (Calcium/calmodulin-dependent Serine protein Kinase), Caenorhabditis elegans lin-2, and similar proteins. MPP1 and CASK are scaffolding proteins from the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). In addition, they also have the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. CASK and lin-2 also contain an N-terminal calmodulin-dependent kinase (CaMK)-like domain and two L27 domains. MPP1 is ubiquitously-expressed and plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. CASK is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212796 cd11862, SH3_MPP, Src Homology 3 domain of Membrane Protein, Palmitoylated (or MAGUK p55 subfamily member) proteins

 Score =  106 bits (268), Expect = 3e-29
 Identities = 37/61 (60%), Positives = 49/61 (80%), Gaps = 1/61 (1%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK-DNVAGSAGLIPSP 125
           FVRA F+Y+P +D LIPC +AG++F+ GDILQI+++DD NWWQARK  +  G AGLIPS 
Sbjct: 1   FVRALFDYDPEEDPLIPCKEAGLSFKKGDILQIVNQDDPNWWQARKVGDPNGRAGLIPSQ 60

Query: 126 E 126
           +
Sbjct: 61  D 61

The MPP/p55 subfamily of MAGUK (membrane-associated guanylate kinase) proteins includes at least eight vertebrate members (MPP1-7 and CASK), four Drosophila proteins (Stardust, Varicose, CASK and Skiff), and other similar proteins; they all contain one each of the core of three domains characteristic of MAGUK proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, most members except for MPP1 contain N-terminal L27 domains and some also contain a Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. CASK has an additional calmodulin-dependent kinase (CaMK)-like domain at the N-terminus. Members of this subfamily are scaffolding proteins that play important roles in regulating and establishing cell polarity, cell adhesion, and synaptic targeting and transmission, among others. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|213013 cd12080, SH3_MPP1, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)

 Score =  102 bits (255), Expect = 2e-27
 Identities = 39/62 (62%), Positives = 50/62 (80%), Gaps = 1/62 (1%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR-KDNVAGSAGLIPSP 125
           ++RAQF+Y+P  D+LIPC +AG+ FQ GDI+QII+KDD NWWQ R + +   SAGLIPSP
Sbjct: 1   YMRAQFDYDPKKDNLIPCKEAGLKFQTGDIIQIINKDDSNWWQGRVEGSGEESAGLIPSP 60

Query: 126 EL 127
           EL
Sbjct: 61  EL 62

MPP1, also called 55 kDa erythrocyte membrane protein (p55), is a ubiquitously-expressed scaffolding protein that plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. It was originally identified as an erythrocyte protein that stabilizes the actin cytoskeleton to the plasma membrane by forming a complex with 4.1R protein and glycophorin C. MPP1 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains the three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212969 cd12036, SH3_MPP5, Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)

 Score = 80.9 bits (200), Expect = 2e-19
 Identities = 32/62 (51%), Positives = 43/62 (69%), Gaps = 3/62 (4%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKD---NVAGSAGLIPS 124
           VRA F+Y+P DD  IPC + G++FQ GDIL +IS++D NWWQA ++   +    AGLIPS
Sbjct: 2   VRAHFDYDPEDDPYIPCRELGLSFQKGDILHVISQEDPNWWQAYREGEEDNQSLAGLIPS 61

Query: 125 PE 126
             
Sbjct: 62  KS 63

MPP5, also called PALS1 (Protein associated with Lin7) or Nagie oko protein in zebrafish or Stardust in Drosophila, is a scaffolding protein which associates with Crumbs homolog 1 (CRB1), CRB2, or CRB3 through its PDZ domain and with PALS1-associated tight junction protein (PATJ) or multi-PDZ domain protein 1 (MUPP1) through its L27 domain. The resulting tri-protein complexes are core proteins of the Crumb complex, which localizes at tight junctions or subapical regions, and is involved in the maintenance of apical-basal polarity in epithelial cells and the morphogenesis and function of photoreceptor cells. MPP5 is critical for the proper stratification of the retina and is also expressed in T lymphocytes where it is important for TCR-mediated activation of NFkB. Drosophila Stardust exists in several isoforms, some of which show opposing functions in photoreceptor cells, which suggests that the relative ratio of different Crumbs complexes regulates photoreceptor homeostasis. MPP5 contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 63

>gnl|CDD|212970 cd12037, SH3_MPP2, Src Homology 3 domain of Membrane Protein, Palmitoylated 2 (or MAGUK p55 subfamily member 2)

 Score = 78.8 bits (194), Expect = 8e-19
 Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           FV+  F+Y+P  D LIPC +AG+ F+ GD+LQI++++D NWWQA      GSAGLIPS
Sbjct: 1   FVKCHFDYDPSSDSLIPCKEAGLKFRAGDLLQIVNQEDPNWWQACHVE-GGSAGLIPS 57

MPP2 is a scaffolding protein that interacts with the non-receptor tyrosine kinase c-Src in epithelial cells to negatively regulate its activity and morphological function. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212971 cd12038, SH3_MPP6, Src Homology 3 domain of Membrane Protein, Palmitoylated 6 (or MAGUK p55 subfamily member 6)

 Score = 78.6 bits (193), Expect = 1e-18
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           FV+  F+YNP +D+LIPC +AG+ F  G+ILQI++++D NWWQA      GSAGLIPS
Sbjct: 1   FVKCHFDYNPYNDNLIPCKEAGLKFSKGEILQIVNREDPNWWQASHVKEGGSAGLIPS 58

MPP6, also called Veli-associated MAGUK 1 (VAM-1) or PALS2, is a scaffolding protein that binds to Veli-1, a homolog of Caenorhabditis Lin-7. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212967 cd12034, SH3_MPP4, Src Homology 3 domain of Membrane Protein, Palmitoylated 4 (or MAGUK p55 subfamily member 4)

 Score = 77.2 bits (190), Expect = 4e-18
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 1/59 (1%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGS-AGLIPS 124
           +VRA  +Y P  D  IPCA AG+ F+ GDILQI+ ++D  WWQARK +   + AGLIPS
Sbjct: 1   YVRAMVDYWPQQDPSIPCADAGLPFRKGDILQIVDQNDSLWWQARKLSDLAACAGLIPS 59

MPP4, also called Disks Large homolog 6 (DLG6) or Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 5 protein (ALS2CR5), is a retina-specific scaffolding protein that plays a role in organizing presynaptic protein complexes in the photoreceptor synapse, where it localizes to the plasma membrane. It is required in the proper localization of calcium ATPases and for maintenance of calcium homeostasis. MPP4 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212966 cd12033, SH3_MPP7, Src Homology 3 domain of Membrane Protein, Palmitoylated 7 (or MAGUK p55 subfamily member 7)

 Score = 76.2 bits (187), Expect = 7e-18
 Identities = 33/59 (55%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAG-SAGLIPS 124
           F++A F+YNP +D  IPC +AG++F+ GDILQI+S+DD  WWQA+ +  A   AGLIPS
Sbjct: 1   FIKALFDYNPNEDKAIPCKEAGLSFKKGDILQIMSQDDATWWQAKHEGDANPRAGLIPS 59

MPP7 is a scaffolding protein that binds to DLG1 and promotes tight junction formation and epithelial cell polarity. Mutations in the MPP7 gene may be associated with the pathogenesis of diabetes and extreme bone mineral density. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212972 cd12039, SH3_MPP3, Src Homology 3 domain of Membrane Protein, Palmitoylated 3 (or MAGUK p55 subfamily member 3)

 Score = 70.4 bits (172), Expect = 1e-15
 Identities = 30/59 (50%), Positives = 43/59 (72%), Gaps = 1/59 (1%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK-DNVAGSAGLIPS 124
           F+RA F+YNP +D  IPC +AG+ F+  DIL+++S+DD  WWQA++  +    AGLIPS
Sbjct: 1   FMRALFDYNPYEDRAIPCQEAGLPFKRRDILEVVSQDDPTWWQAKRVGDTNLRAGLIPS 59

MPP3 is a scaffolding protein that colocalizes with MPP5 and CRB1 at the subdpical region adjacent to adherens junctions and may function in photoreceptor polarity. It interacts with some nectins and regulates their trafficking and processing. Nectins are cell-cell adhesion proteins involved in the establishment apical-basal polarity at cell adhesion sites. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|213014 cd12081, SH3_CASK, Src Homology 3 domain of Calcium/calmodulin-dependent Serine protein Kinase

 Score = 62.6 bits (152), Expect = 7e-13
 Identities = 24/33 (72%), Positives = 28/33 (84%), Gaps = 1/33 (3%)

Query: 230 MFQIISKDDHNWWQARKDN-VAGSAGLIPSPEL 261
           + QIISKDDHNWWQA+ +N   G+AGLIPSPEL
Sbjct: 30  ILQIISKDDHNWWQAKLENSKNGTAGLIPSPEL 62

CASK is a scaffolding protein that is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. CASK interacts with many different binding partners including parkin, neurexin, syndecans, calcium channel proteins, caskin, among others, to perform specific functions in different subcellular locations. Disruption of the CASK gene in mice results in neonatal lethality while mutations in the human gene have been associated with X-linked mental retardation. Drosophila CASK is associated with both pre- and postsynaptic membranes and is crucial in synaptic transmission and vesicle cycling. CASK contains an N-terminal calmodulin-dependent kinase (CaMK)-like domain, two L27 domains, followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212968 cd12035, SH3_MPP1-like, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)-like proteins

 Score = 61.3 bits (149), Expect = 2e-12
 Identities = 24/36 (66%), Positives = 26/36 (72%), Gaps = 1/36 (2%)

Query: 227 CSVMFQIISKDDHNWWQARKDNVA-GSAGLIPSPEL 261
              + QIISKDDHNWWQARK   +   AGLIPSPEL
Sbjct: 27  TGDILQIISKDDHNWWQARKPGASKEPAGLIPSPEL 62

This subfamily includes MPP1, CASK (Calcium/calmodulin-dependent Serine protein Kinase), Caenorhabditis elegans lin-2, and similar proteins. MPP1 and CASK are scaffolding proteins from the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). In addition, they also have the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. CASK and lin-2 also contain an N-terminal calmodulin-dependent kinase (CaMK)-like domain and two L27 domains. MPP1 is ubiquitously-expressed and plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. CASK is highly expressed in the mammalian nervous system and plays roles in synaptic protein targeting, neural development, and gene expression regulation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212795 cd11861, SH3_DLG-like, Src Homology 3 domain of Disks large homolog proteins

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGLIP 123
           +VRA F+Y+P  D  +P    G++F+ GDIL + +  D  WWQAR+   +      G+IP
Sbjct: 1   YVRALFDYDPSRDSGLP--SQGLSFKFGDILHVTNASDDEWWQARRVTPNGEEEEVGVIP 58

Query: 124 S 124
           S
Sbjct: 59  S 59

The DLG-like proteins are scaffolding proteins that cluster at synapses and are also called PSD (postsynaptic density)-95 proteins or SAPs (synapse-associated proteins). They play important roles in synaptic development and plasticity, cell polarity, migration and proliferation. They are members of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG-like proteins contain three PDZ domains and varying N-terminal regions. All DLG proteins exist as alternatively-spliced isoforms. Vertebrates contain four DLG proteins from different genes, called DLG1-4. DLG4 and DLG2 are found predominantly at postsynaptic sites and they mediate surface ion channel and receptor clustering. DLG3 is found axons and some presynaptic terminals. DLG1 interacts with AMPA-type glutamate receptors and is critical in their maturation and delivery to synapses. The SH3 domain of DLG4 binds and clusters the kainate subgroup of glutamate receptors via two proline-rich sequences in their C-terminal tail. It also binds AKAP79/150 (A-kinase anchoring protein). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase

 Score = 58.1 bits (141), Expect = 4e-10
 Identities = 21/44 (47%), Positives = 32/44 (72%), Gaps = 2/44 (4%)

Query: 288 FSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
           +SV    TTR PR  E +G+ Y+F+S +EM +DI+AN++LEY +
Sbjct: 32  YSVSH--TTRPPRPGEVDGKDYHFVSKEEMENDISANEFLEYAE 73

Length = 183

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 9/58 (15%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            VRA ++Y   D D        ++F+ GDI+ ++ K D  WW+ R     G  GL PS
Sbjct: 4   QVRALYDYTAQDPD-------ELSFKKGDIITVLEKSDDGWWKGRLGR--GKEGLFPS 52

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 54.3 bits (131), Expect = 5e-10
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 9/64 (14%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
            +VRA F++   DD+ +P       F+ G+IL +I K +  WW AR  N  G  G+IP P
Sbjct: 1   EYVRALFDFPGNDDEDLP-------FKKGEILTVIRKPEEQWWNAR--NSEGKTGMIPVP 51

Query: 126 ELQE 129
            +++
Sbjct: 52  YVEK 55

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2

 Score = 55.6 bits (135), Expect = 1e-09
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 283 SFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
             +  FSV    TTR PR  E +G  Y+F+S +E    I   ++LE+
Sbjct: 24  DPNFGFSVSH--TTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEW 68

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. Length = 137

>gnl|CDD|213013 cd12080, SH3_MPP1, Src Homology 3 domain of Membrane Protein, Palmitoylated 1 (or MAGUK p55 subfamily member 1)

 Score = 52.3 bits (125), Expect = 3e-09
 Identities = 21/33 (63%), Positives = 25/33 (75%), Gaps = 1/33 (3%)

Query: 230 MFQIISKDDHNWWQAR-KDNVAGSAGLIPSPEL 261
           + QII+KDD NWWQ R + +   SAGLIPSPEL
Sbjct: 30  IIQIINKDDSNWWQGRVEGSGEESAGLIPSPEL 62

MPP1, also called 55 kDa erythrocyte membrane protein (p55), is a ubiquitously-expressed scaffolding protein that plays roles in regulating neutrophil polarity, cell shape, hair cell development, and neural development and patterning of the retina. It was originally identified as an erythrocyte protein that stabilizes the actin cytoskeleton to the plasma membrane by forming a complex with 4.1R protein and glycophorin C. MPP1 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains the three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
           TTR PR  E +G  Y+F+S +E    I A ++LE+
Sbjct: 34  TTRKPRPGEVDGVDYFFVSKEEFEEMIKAGEFLEW 68

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 179

>gnl|CDD|212796 cd11862, SH3_MPP, Src Homology 3 domain of Membrane Protein, Palmitoylated (or MAGUK p55 subfamily member) proteins

 Score = 51.4 bits (124), Expect = 6e-09
 Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 1/30 (3%)

Query: 232 QIISKDDHNWWQARK-DNVAGSAGLIPSPE 260
           QI+++DD NWWQARK  +  G AGLIPS +
Sbjct: 32  QIVNQDDPNWWQARKVGDPNGRAGLIPSQD 61

The MPP/p55 subfamily of MAGUK (membrane-associated guanylate kinase) proteins includes at least eight vertebrate members (MPP1-7 and CASK), four Drosophila proteins (Stardust, Varicose, CASK and Skiff), and other similar proteins; they all contain one each of the core of three domains characteristic of MAGUK proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, most members except for MPP1 contain N-terminal L27 domains and some also contain a Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. CASK has an additional calmodulin-dependent kinase (CaMK)-like domain at the N-terminus. Members of this subfamily are scaffolding proteins that play important roles in regulating and establishing cell polarity, cell adhesion, and synaptic targeting and transmission, among others. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues

 Score = 54.2 bits (131), Expect = 7e-09
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 278 QGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG 330
           Q I  +F     V    TTR PR  E NG  Y+F+S +E   DI +  +LE+G
Sbjct: 14  QEIPDAFE--RVVSH--TTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLEWG 62

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 174

>gnl|CDD|212965 cd12032, SH3_DLG2, Src Homology 3 domain of Disks Large homolog 2

 Score = 51.2 bits (122), Expect = 1e-08
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA---GLI 122
           ++VRA F+Y    D  +P    G++F+ GDIL +I+  D  WWQAR+    G +   G+I
Sbjct: 6   LYVRAMFDYEKSKDSGLP--SQGLSFRYGDILHVINASDDEWWQARRVTPDGDSEEMGVI 63

Query: 123 PS 124
           PS
Sbjct: 64  PS 65

DLG2, also called postsynaptic density-93 (PSD93) or Channel-associated protein of synapse-110 (chapsyn 110), is a scaffolding protein that clusters at synapses and plays an important role in synaptic development and plasticity. The DLG2 delta isoform binds inwardly rectifying potassium Kir2 channels, which determine resting membrane potential in neurons. It regulates the spatial and temporal distribution of Kir2 channels within neuronal membranes. DLG2 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG2 contains three PDZ domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 74

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 10/63 (15%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           + R  F+Y   D +        ++ + GD+++++ KDD+ WW+  +    G  GL+PS  
Sbjct: 1   YGRVIFDYVATDPN-------ELSLKKGDVVKVLDKDDNGWWEGERG---GRRGLVPSSY 50

Query: 127 LQE 129
           ++E
Sbjct: 51  VEE 53

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212964 cd12031, SH3_DLG1, Src Homology 3 domain of Disks Large homolog 1

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 5/62 (8%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA---GLI 122
           ++VRA F+Y+   D  +P    G+ F+ GDIL +++  D  WWQAR+    G +   G+I
Sbjct: 3   LYVRALFDYDKTKDSGLP--SQGLNFKFGDILHVVNASDDEWWQARQVTADGESEEIGVI 60

Query: 123 PS 124
           PS
Sbjct: 61  PS 62

DLG1, also called synapse-associated protein 97 (SAP97), is a scaffolding protein that clusters at synapses and plays an important role in synaptic development and plasticity. DLG1 plays roles in regulating cell polarity, proliferation, migration, and cycle progression. It interacts with AMPA-type glutamate receptors and is critical in their maturation and delivery to synapses. It also interacts with PKCalpha and promotes wound healing. DLG1 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG1 contains three PDZ domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 67

>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
           TTR+PR  E +G  Y+F+S +E    I   ++LE+
Sbjct: 39  TTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEW 73

Length = 205

>gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism]

 Score = 52.5 bits (127), Expect = 3e-08
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 280 IYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
           +     L FSV    TTR PR  E +G  Y+F++ +E    I  +++LE+
Sbjct: 24  LLEDDKLRFSV--SATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEW 71

Length = 191

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 49.0 bits (118), Expect = 3e-08
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 9/58 (15%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           + RA ++Y   DDD +        F+ GDI+ ++ KDD  WW+   +   G  GL P+
Sbjct: 1   YARALYDYEAQDDDELS-------FKKGDIITVLEKDDDGWWEGELNG--GREGLFPA 49

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase

 Score = 51.6 bits (124), Expect = 7e-08
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
           +R+ +VL G  GVG+ HIK  L++++P+K+ Y V 
Sbjct: 1   QRRPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVS 35

Length = 183

>gnl|CDD|212962 cd12029, SH3_DLG3, Src Homology 3 domain of Disks Large homolog 3

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 5/67 (7%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA---GLI 122
           ++VRA F+Y+   D  +P    G++F  GDIL +I+  D  WWQAR     G +   G+I
Sbjct: 3   LYVRALFDYDRTRDSCLP--SQGLSFSYGDILHVINASDDEWWQARLVTPHGESEQIGVI 60

Query: 123 PSPELQE 129
           PS +  E
Sbjct: 61  PSKKRVE 67

DLG3, also called synapse-associated protein 102 (SAP102), is a scaffolding protein that clusters at synapses and plays an important role in synaptic development and plasticity. Mutations in DLG3 cause midgestational embryonic lethality in mice and may be associated with nonsyndromic X-linked mental retardation in humans. It interacts with the NEDD4 (neural precursor cell-expressed developmentally downregulated 4) family of ubiquitin ligases and promotes apical tight junction formation. DLG3 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG3 contains three PDZ domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 67

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 45.3 bits (108), Expect = 7e-07
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 9/56 (16%)

Query: 69  RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            A ++Y   + D +        F+ GDI+ ++ K D  WW+ R     G  GLIPS
Sbjct: 1   VALYDYTAREPDELS-------FKKGDIIIVLEKSDDGWWKGRLKG--GKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           V A F Y   ++D        ++FQ GDI+ ++SKDD +WW   +  + G  GL PS
Sbjct: 2   VIALFPYTAQNED-------ELSFQKGDIINVLSKDDPDWW---RGELNGQTGLFPS 48

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212789 cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-NWWQARKDNVAGSAGLIPSPE 126
            RA + Y+   DD        ++F+ G+IL++   D    WWQARK N  G  G+ PS  
Sbjct: 2   ARALYPYDASPDDP-----NELSFEKGEILEV--SDTSGKWWQARKSN--GETGICPSNY 52

Query: 127 LQ 128
           LQ
Sbjct: 53  LQ 54

Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212797 cd11863, SH3_CACNB, Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 19/58 (32%), Positives = 26/58 (44%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
           VR    Y+   DD  P     ++F+  D L I  K +++WW  R        G IPSP
Sbjct: 3   VRTNVGYDGSLDDDSPVPGYAVSFEAKDFLHIKEKYNNDWWIGRLVKEGCDIGFIPSP 60

Voltage-dependent calcium channels (Ca(V)s) are multi-protein complexes that regulate the entry of calcium into cells. They impact muscle contraction, neuronal migration, hormone and neurotransmitter release, and the activation of calcium-dependent signaling pathways. They are composed of four subunits: alpha1, alpha2delta, beta, and gamma. The beta subunit is a soluble and intracellular protein that interacts with the transmembrane alpha1 subunit. It facilitates the trafficking and proper localization of the alpha1 subunit to the cellular plasma membrane. Vertebrates contain four different beta subunits from distinct genes (beta1-4); each exists as multiple splice variants. All are expressed in the brain while other tissues show more specific expression patterns. The beta subunits show similarity to MAGUK (membrane-associated guanylate kinase) proteins in that they contain SH3 and inactive guanylate kinase (GuK) domains; however, they do not appear to contain a PDZ domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212974 cd12041, SH3_CACNB1, Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta-1

 Score = 43.0 bits (101), Expect = 7e-06
 Identities = 21/58 (36%), Positives = 27/58 (46%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
           VR    YNP   D +P     I+F+  D L I  K +++WW  R        G IPSP
Sbjct: 7   VRTNVGYNPSPGDDVPVQGMAISFEPKDFLHIKEKYNNDWWIGRLVKEGCEVGFIPSP 64

The beta1 subunit of voltage-dependent calcium channels (Ca(V)s) is one of four beta subunits present in vertebrates. It is the only beta subunit, as the beta1a variant, expressed in skeletal muscle; the beta1b variant is also widely expressed in other tissues including the heart and brain. Knockout of the beta1 gene in mice results in embryonic lethality, demonstrating its importance in development. Ca(V)s are multi-protein complexes that regulate the entry of calcium into cells. They impact muscle contraction, neuronal migration, hormone and neurotransmitter release, and the activation of calcium-dependent signaling pathways. They are composed of four subunits: alpha1, alpha2delta, beta, and gamma. The beta subunit is a soluble and intracellular protein that interacts with the transmembrane alpha1 subunit. It facilitates the trafficking and proper localization of the alpha1 subunit to the cellular plasma membrane. Vertebrates contain four different beta subunits from distinct genes (beta1-4); each exists as multiple splice variants. All are expressed in the brain while other tissues show more specific expression patterns. The beta subunits show similarity to MAGUK (membrane-associated guanylate kinase) proteins in that they contain SH3 and inactive guanylate kinase (GuK) domains; however, they do not appear to contain a PDZ domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             RA ++Y     D        ++F+ GD+L I  K D NWW+A      G  GLIPS
Sbjct: 1   VFRALYDYEAQHPD-------ELSFEEGDLLYISDKSDPNWWKAT---CGGKTGLIPS 48

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              A ++Y    DDDL        +F+ GD LQI+   D +WW AR  +  G  G IPS
Sbjct: 1   IYVALYDYEARTDDDL--------SFKKGDRLQILDDSDGDWWLARHLS-TGKEGYIPS 50

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 10/57 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
           FV+AQ++++  D        + ++F+ GDI++++   D NWW+ R   ++G  G  P
Sbjct: 1   FVQAQYDFSAED-------PSQLSFRRGDIIEVLDCPDPNWWRGR---ISGRVGFFP 47

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212973 cd12040, SH3_CACNB2, Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta2

 Score = 40.8 bits (95), Expect = 4e-05
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
           VR    Y+   +D +P     I+F+  D L +  K +++WW  R        G IPSP
Sbjct: 8   VRTNVGYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSP 65

The beta2 subunit of voltage-dependent calcium channels (Ca(V)s) is one of four beta subunits present in vertebrates. It is expressed in the heart and is present in specific neuronal cells including cerebellar Purkinje cells, hippocampal pyramidal neurons, and photoreceptors. Knockout of the beta2 gene in mice results in embryonic lethality, demonstrating its importance in development. Ca(V)s are multi-protein complexes that regulate the entry of calcium into cells. They impact muscle contraction, neuronal migration, hormone and neurotransmitter release, and the activation of calcium-dependent signaling pathways. They are composed of four subunits: alpha1, alpha2delta, beta, and gamma. The beta subunit is a soluble and intracellular protein that interacts with the transmembrane alpha1 subunit. It facilitates the trafficking and proper localization of the alpha1 subunit to the cellular plasma membrane. Vertebrates contain four different beta subunits from distinct genes (beta1-4); each exists as multiple splice variants. All are expressed in the brain while other tissues show more specific expression patterns. The beta subunits show similarity to MAGUK (membrane-associated guanylate kinase) proteins in that they contain SH3 and inactive guanylate kinase (GuK) domains; however, they do not appear to contain a PDZ domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 69

>gnl|CDD|212963 cd12030, SH3_DLG4, Src Homology 3 domain of Disks Large homolog 4

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 11/64 (17%)

Query: 67  FVRAQFNYNPLDDDLIPC---AQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA---G 120
           ++RA F+Y+   D    C   +QA ++F+ GD+L +I   D  WWQAR+ +        G
Sbjct: 3   YIRALFDYDKTKD----CGFLSQA-LSFRFGDVLHVIDAGDEEWWQARRVHSDSETEEIG 57

Query: 121 LIPS 124
            IPS
Sbjct: 58  FIPS 61

DLG4, also called postsynaptic density-95 (PSD95) or synapse-associated protein 90 (SAP90), is a scaffolding protein that clusters at synapses and plays an important role in synaptic development and plasticity. It is responsible for the membrane clustering and retention of many transporters and receptors such as potassium channels and PMCA4b, a P-type ion transport ATPase, among others. DLG4 is a member of the MAGUK (membrane-associated guanylate kinase) protein family, which is characterized by the presence of a core of three domains: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. DLG4 contains three PDZ domains. The SH3 domain of DLG4 binds and clusters the kainate subgroup of glutamate receptors via two proline-rich sequences in their C-terminal tail. It also binds AKAP79/150 (A-kinase anchoring protein). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 66

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 4/43 (9%)

Query: 89  IAFQIGDILQIISK--DDHNWWQARKDNVAGSAGLIPSPELQE 129
           ++F+ G+ L+II K  DD +WW+AR  N  G+ GL+P   ++ 
Sbjct: 16  LSFEKGERLEIIEKPEDDPDWWKAR--NALGTTGLVPRNYVEV 56

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|212975 cd12042, SH3_CACNB3, Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta3

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 21/62 (33%), Positives = 27/62 (43%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
           VR   +Y    D+  P   A I F+  D L I  K  ++WW  R     G    IPSP+ 
Sbjct: 7   VRTNVSYCGALDEECPVQGAAINFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQR 66

Query: 128 QE 129
            E
Sbjct: 67  LE 68

The beta3 subunit of voltage-dependent calcium channels (Ca(V)s) is one of four beta subunits present in vertebrates. It is the main beta subunit present in smooth muscles and is strongly expressed in the brain; it is predominant in the olfactory bulb, cortex, and hippocampus. It may play a role in regulating the NMDAR (N-methyl-d-aspartate receptor) activity in the hippocampus and thus, activity-dependent synaptic plasticity and cognitive behaviors. Ca(V)s are multi-protein complexes that regulate the entry of calcium into cells. They impact muscle contraction, neuronal migration, hormone and neurotransmitter release, and the activation of calcium-dependent signaling pathways. They are composed of four subunits: alpha1, alpha2delta, beta, and gamma. The beta subunit is a soluble and intracellular protein that interacts with the transmembrane alpha1 subunit. It facilitates the trafficking and proper localization of the alpha1 subunit to the cellular plasma membrane. Vertebrates contain four different beta subunits from distinct genes (beta1-4); each exists as multiple splice variants. All are expressed in the brain while other tissues show more specific expression patterns. The beta subunits show similarity to MAGUK (membrane-associated guanylate kinase) proteins in that they contain SH3 and inactive guanylate kinase (GuK) domains; however, they do not appear to contain a PDZ domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +V+A F+++P +D         + F+ GD ++++   D NWW+       G  G+ P 
Sbjct: 1   YVQALFDFDPQED-------GELGFRRGDFIEVMDNSDPNWWKGA---CHGQTGMFPR 48

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 69  RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ 128
              ++Y   +DD +  ++       GD++ +I K +  WW   ++   G  GL+P   L+
Sbjct: 3   SVLYDYTAQEDDELSISK-------GDVVAVIEKGEDGWWTVERN---GQKGLVPGTYLE 52

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 10/55 (18%)

Query: 70  AQFNYNPLDDDLIPCAQAGIAFQIGDILQII-SKDDHNWWQARKDNVAGSAGLIP 123
           A++N+N   ++ +P       F+ GDIL I+    D NW++A+  N  G  G+IP
Sbjct: 6   AKYNFNGASEEDLP-------FKKGDILTIVAVTKDPNWYKAK--NKDGREGMIP 51

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212971 cd12038, SH3_MPP6, Src Homology 3 domain of Membrane Protein, Palmitoylated 6 (or MAGUK p55 subfamily member 6)

 Score = 38.5 bits (89), Expect = 3e-04
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
           + QI++++D NWWQA      GSAGLIPS
Sbjct: 30  ILQIVNREDPNWWQASHVKEGGSAGLIPS 58

MPP6, also called Veli-associated MAGUK 1 (VAM-1) or PALS2, is a scaffolding protein that binds to Veli-1, a homolog of Caenorhabditis Lin-7. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 7/42 (16%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWW 108
            V A +++ P   + +        F+ GDI+ +++KD   WW
Sbjct: 1   VVVALYDFTPKSKNQLS-------FKAGDIIYVLNKDPSGWW 35

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            +A + Y+  D D        ++F  GDI++I+ +D   WW  R   + G  GL P 
Sbjct: 2   CKALYAYDAQDTD-------ELSFNEGDIIEILKEDPSGWWTGR---LRGKEGLFPG 48

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212976 cd12043, SH3_CACNB4, Src Homology 3 domain of Voltage-dependent L-type calcium channel subunit beta4

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 68  VRAQFNY-NPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
           VR   +Y   LD+D +P     I+F   D L I  K +++WW  R        G IPSP
Sbjct: 7   VRTNVSYCGALDED-VPVPGTAISFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSP 64

The beta4 subunit of voltage-dependent calcium channels (Ca(V)s) is one of four beta subunits present in vertebrates. It is the only beta subunit expressed in the cochlea and is highly expressed in the brain, predominantly in the cerebellum. Ca(V)s are multi-protein complexes that regulate the entry of calcium into cells. They impact muscle contraction, neuronal migration, hormone and neurotransmitter release, and the activation of calcium-dependent signaling pathways. They are composed of four subunits: alpha1, alpha2delta, beta, and gamma. The beta subunit is a soluble and intracellular protein that interacts with the transmembrane alpha1 subunit. It facilitates the trafficking and proper localization of the alpha1 subunit to the cellular plasma membrane. Vertebrates contain four different beta subunits from distinct genes (beta1-4); each exists as multiple splice variants. All are expressed in the brain while other tissues show more specific expression patterns. The beta subunits show similarity to MAGUK (membrane-associated guanylate kinase) proteins in that they contain SH3 and inactive guanylate kinase (GuK) domains; however, they do not appear to contain a PDZ domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|212969 cd12036, SH3_MPP5, Src Homology 3 domain of Membrane Protein, Palmitoylated 5 (or MAGUK p55 subfamily member 5)

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 3/31 (9%)

Query: 233 IISKDDHNWWQARKD---NVAGSAGLIPSPE 260
           +IS++D NWWQA ++   +    AGLIPS  
Sbjct: 33  VISQEDPNWWQAYREGEEDNQSLAGLIPSKS 63

MPP5, also called PALS1 (Protein associated with Lin7) or Nagie oko protein in zebrafish or Stardust in Drosophila, is a scaffolding protein which associates with Crumbs homolog 1 (CRB1), CRB2, or CRB3 through its PDZ domain and with PALS1-associated tight junction protein (PATJ) or multi-PDZ domain protein 1 (MUPP1) through its L27 domain. The resulting tri-protein complexes are core proteins of the Crumb complex, which localizes at tight junctions or subapical regions, and is involved in the maintenance of apical-basal polarity in epithelial cells and the morphogenesis and function of photoreceptor cells. MPP5 is critical for the proper stratification of the retina and is also expressed in T lymphocytes where it is important for TCR-mediated activation of NFkB. Drosophila Stardust exists in several isoforms, some of which show opposing functions in photoreceptor cells, which suggests that the relative ratio of different Crumbs complexes regulates photoreceptor homeostasis. MPP5 contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 63

>gnl|CDD|212970 cd12037, SH3_MPP2, Src Homology 3 domain of Membrane Protein, Palmitoylated 2 (or MAGUK p55 subfamily member 2)

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 16/29 (55%), Positives = 21/29 (72%), Gaps = 1/29 (3%)

Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPS 258
           + QI++++D NWWQA      GSAGLIPS
Sbjct: 30  LLQIVNQEDPNWWQACHVE-GGSAGLIPS 57

MPP2 is a scaffolding protein that interacts with the non-receptor tyrosine kinase c-Src in epithelial cells to negatively regulate its activity and morphological function. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). In addition, it also contains the Hook (Protein 4.1 Binding) motif in between the SH3 and GuK domains. The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 7/51 (13%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAG 117
            V+A +++NP +          + F+ GDI+ ++   D +WW+       G
Sbjct: 1   RVQALYDFNPQEPG-------ELEFRRGDIITVLDSSDPDWWKGELRGRVG 44

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA----GLIP 123
            +A ++Y P  +D        +  Q  DIL ++ K D +WW+ +    +       GL+P
Sbjct: 2   YKALYDYEPQTED-------ELTIQEDDILYLLEKSDDDWWKVKLKVNSSDDDEPVGLVP 54

Query: 124 S 124
           +
Sbjct: 55  A 55

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 10/52 (19%)

Query: 78  DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 129
           + DL        +F+ G++L+IISK    WW A  +N  G+ GL+P   L+ 
Sbjct: 13  EGDL--------SFKKGEVLRIISKRADGWWLA--ENSKGNRGLVPKTYLKV 54

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212967 cd12034, SH3_MPP4, Src Homology 3 domain of Membrane Protein, Palmitoylated 4 (or MAGUK p55 subfamily member 4)

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 15/30 (50%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 230 MFQIISKDDHNWWQARKDNVAGS-AGLIPS 258
           + QI+ ++D  WWQARK +   + AGLIPS
Sbjct: 30  ILQIVDQNDSLWWQARKLSDLAACAGLIPS 59

MPP4, also called Disks Large homolog 6 (DLG6) or Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 5 protein (ALS2CR5), is a retina-specific scaffolding protein that plays a role in organizing presynaptic protein complexes in the photoreceptor synapse, where it localizes to the plasma membrane. It is required in the proper localization of calcium ATPases and for maintenance of calcium homeostasis. MPP4 is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 12/58 (20%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIP 123
            R  F+Y   ++D +         + GDI+ I+SKD  D  WW   K  + G  G+ P
Sbjct: 2   ARVLFDYEAENEDEL-------TLREGDIVTILSKDCEDKGWW---KGELNGKRGVFP 49

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           V   ++Y   +DD +        F  G I+ +++K+D +WW   K  + G  GL PS
Sbjct: 3   VIGMYDYTAQNDDELA-------FSKGQIINVLNKEDPDWW---KGELNGQVGLFPS 49

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
           VRA+FN+   ++D        ++F  GD++ +   ++  WW+       G  G  PS  +
Sbjct: 2   VRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEG---THNGRTGWFPSNYV 51

Query: 128 QE 129
           +E
Sbjct: 52  RE 53

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212966 cd12033, SH3_MPP7, Src Homology 3 domain of Membrane Protein, Palmitoylated 7 (or MAGUK p55 subfamily member 7)

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 230 MFQIISKDDHNWWQARKDNVAG-SAGLIPS 258
           + QI+S+DD  WWQA+ +  A   AGLIPS
Sbjct: 30  ILQIMSQDDATWWQAKHEGDANPRAGLIPS 59

MPP7 is a scaffolding protein that binds to DLG1 and promotes tight junction formation and epithelial cell polarity. Mutations in the MPP7 gene may be associated with the pathogenesis of diabetes and extreme bone mineral density. It is one of seven vertebrate homologs of the Drosophila Stardust protein, which is required in establishing cell polarity, and it contains two L27 domains followed by the core of three domains characteristic of MAGUK (membrane-associated guanylate kinase) proteins: PDZ, SH3, and guanylate kinase (GuK). The GuK domain in MAGUK proteins is enzymatically inactive; instead, the domain mediates protein-protein interactions and associates intramolecularly with the SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 35.6 bits (82), Expect = 0.003
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 12/59 (20%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIP 123
           + +A F+Y   ++D        + F+ G+I+ IISKD  +  WW   K  + G  G+ P
Sbjct: 3   YCKALFHYEGTNED-------ELDFKEGEIILIISKDTGEPGWW---KGELNGKEGVFP 51

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 7/45 (15%)

Query: 73  NYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAG 117
           +Y    DD        I+ Q G++++++ K+D  WW  RK +  G
Sbjct: 7   DYEAQGDD-------EISLQEGEVVEVLEKNDSGWWYVRKGDKEG 44

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 4/37 (10%)

Query: 89  IAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPS 124
           ++F+ G IL++++ + D NW++A  D   G  GLIP 
Sbjct: 16  LSFKKGSILKVLNMEDDPNWYKAELD---GKEGLIPK 49

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 10/54 (18%)

Query: 288 FSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLE--------YGKSI 333
           FSV    TTR+PR  E++G  Y+F     M  +I   ++LE        YG SI
Sbjct: 165 FSV--SHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTSI 216

Length = 398

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 12/57 (21%)

Query: 69  RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK--DDHNWWQARKDNVAGSAGLIP 123
           R  F+YNP+  D        +A + GD++++ISK  +D  WW+     + G  G  P
Sbjct: 3   RVLFDYNPVAPD-------ELALKKGDVIEVISKETEDEGWWEGE---LNGRRGFFP 49

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPSPELQE 263
            +I K +  WW AR  N  G  G+IP P +++
Sbjct: 26  TVIRKPEEQWWNAR--NSEGKTGMIPVPYVEK 55

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           Q+ V+A+FN+   ++D        ++   GDI+ +   ++  WW+     + G  G  PS
Sbjct: 1   QLVVKARFNFKQTNED-------ELSVCKGDIIYVTRVEEGGWWEG---TLNGKTGWFPS 50

Query: 125 PELQEWRT 132
             ++E ++
Sbjct: 51  NYVREIKS 58

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	352
KOG0609|consensus	542		100.0
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	99.81
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	99.8
PRK14737	186	gmk guanylate kinase; Provisional	99.78
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	99.74
PLN02772	398	guanylate kinase	99.73
KOG4792|consensus	293		99.63
PRK14738	206	gmk guanylate kinase; Provisional	99.59
KOG0708|consensus	359		99.51
KOG0707|consensus	231		99.5
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	99.5
KOG1029|consensus	1118		99.45
PRK00300	205	gmk guanylate kinase; Provisional	99.22
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	99.2
KOG0609|consensus	542		99.09
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.03
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	98.99
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	98.9
KOG3580|consensus	1027		98.89
KOG4226|consensus	379		98.82
KOG2199|consensus	462		98.78
KOG4225|consensus	489		98.72
KOG4348|consensus	627		98.63
KOG4226|consensus	379		98.62
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	98.62
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	98.59
KOG1029|consensus	1118		98.58
KOG3632|consensus	1335		98.57
KOG1118|consensus	366		98.54
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.52
KOG2070|consensus	661		98.39
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.38
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.32
KOG4348|consensus	627		98.3
KOG3812|consensus	475		98.28
PRK08356	195	hypothetical protein; Provisional	98.17
KOG0162|consensus	1106		97.85
KOG2856|consensus	472		97.75
KOG3875|consensus	362		97.75
KOG0515|consensus	752		97.61
KOG3601|consensus	222		97.52
KOG2996|consensus	865		97.48
KOG3655|consensus	484		97.47
KOG3601|consensus	222		97.43
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.41
KOG3632|consensus	1335		97.39
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	97.31
KOG0197|consensus	468		97.17
KOG1264|consensus	1267		97.14
KOG4225|consensus	489		97.07
KOG2546|consensus	483		97.06
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	96.77
KOG1843|consensus	473		96.73
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	96.72
KOG2199|consensus	462		96.72
KOG2996|consensus	865		96.66
PLN02840	421	tRNA dimethylallyltransferase	96.5
COG3709	192	Uncharacterized component of phosphonate metabolis	96.43
KOG4792|consensus	293		96.01
KOG4575|consensus	874		95.98
KOG3557|consensus	721		95.87
KOG1702|consensus	264		95.65
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	95.53
PRK00098	298	GTPase RsgA; Reviewed	95.29
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	95.27
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	95.15
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	94.69
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	94.36
KOG3771|consensus	460		94.12
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	94.05
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	93.91
PRK06762	166	hypothetical protein; Provisional	93.85
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	93.76
KOG4278|consensus	1157		93.74
smart00382	148	AAA ATPases associated with a variety of cellular	93.36
PRK08233	182	hypothetical protein; Provisional	93.25
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	93.23
KOG1118|consensus	366		93.22
TIGR00235	207	udk uridine kinase. Model contains a number of lon	93.09
PHA02530	300	pseT polynucleotide kinase; Provisional	93.0
PRK00131	175	aroK shikimate kinase; Reviewed	92.97
KOG2222|consensus	848		92.79
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	92.77
PRK08118	167	topology modulation protein; Reviewed	92.74
PRK14527	191	adenylate kinase; Provisional	92.35
PRK14531	183	adenylate kinase; Provisional	92.33
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	92.11
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	92.05
PRK03839	180	putative kinase; Provisional	91.99
PRK14530	215	adenylate kinase; Provisional	91.99
PRK06217	183	hypothetical protein; Validated	91.88
PF00004	132	AAA: ATPase family associated with various cellula	91.86
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	91.82
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	91.72
PRK06761	282	hypothetical protein; Provisional	91.66
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	91.66
PLN02200	234	adenylate kinase family protein	91.65
PRK05541	176	adenylylsulfate kinase; Provisional	91.47
PF13555	62	AAA_29: P-loop containing region of AAA domain	91.45
PRK07261	171	topology modulation protein; Provisional	91.43
PRK14532	188	adenylate kinase; Provisional	91.35
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	91.34
PRK00698	205	tmk thymidylate kinase; Validated	91.28
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	91.21
PF05729	166	NACHT: NACHT domain	91.2
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	91.18
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	91.04
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	91.03
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	90.78
PRK05057	172	aroK shikimate kinase I; Reviewed	90.76
PRK13947	171	shikimate kinase; Provisional	90.75
PRK13975	196	thymidylate kinase; Provisional	90.71
PRK06547	172	hypothetical protein; Provisional	90.67
PLN02165	334	adenylate isopentenyltransferase	90.59
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	90.56
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	90.56
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	90.55
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	90.49
KOG2070|consensus	661		90.45
PF00005	137	ABC_tran: ABC transporter This structure is on hol	90.33
PRK05480	209	uridine/cytidine kinase; Provisional	90.3
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	90.28
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	90.21
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	90.2
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	90.19
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	90.11
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	89.89
PRK06696	223	uridine kinase; Validated	89.67
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	89.61
PTZ00088	229	adenylate kinase 1; Provisional	89.42
PF13173	128	AAA_14: AAA domain	89.41
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	89.33
PTZ00301	210	uridine kinase; Provisional	89.33
PRK04040	188	adenylate kinase; Provisional	89.22
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	89.21
COG4525	259	TauB ABC-type taurine transport system, ATPase com	89.14
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	88.96
PRK14528	186	adenylate kinase; Provisional	88.93
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	88.93
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	88.92
PRK13949	169	shikimate kinase; Provisional	88.91
PRK09825	176	idnK D-gluconate kinase; Provisional	88.89
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	88.85
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	88.83
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	88.83
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	88.83
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	88.82
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	88.82
PRK00889	175	adenylylsulfate kinase; Provisional	88.82
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	88.79
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	88.78
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	88.74
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	88.67
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	88.62
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	88.59
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	88.58
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	88.58
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	88.53
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	88.49
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	88.48
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	88.48
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	88.48
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	88.47
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	88.36
PRK02496	184	adk adenylate kinase; Provisional	88.36
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	88.31
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	88.21
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	88.2
cd03269	210	ABC_putative_ATPase This subfamily is involved in	88.16
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	88.14
KOG1451|consensus	812		88.1
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	88.04
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	87.99
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	87.96
COG1162	301	Predicted GTPases [General function prediction onl	87.88
PRK13946	184	shikimate kinase; Provisional	87.85
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	87.84
PRK00279	215	adk adenylate kinase; Reviewed	87.77
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	87.77
PRK03731	171	aroL shikimate kinase II; Reviewed	87.76
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	87.7
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	87.68
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	87.68
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	87.66
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	87.64
PRK01184	184	hypothetical protein; Provisional	87.63
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	87.6
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	87.55
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	87.53
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	87.51
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	87.5
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	87.44
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	87.43
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	87.43
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	87.41
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	87.41
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	87.36
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	87.36
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	87.36
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	87.35
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	87.34
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	87.33
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	87.32
PLN02674	244	adenylate kinase	87.29
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	87.25
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	87.23
PRK09087	226	hypothetical protein; Validated	87.22
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	87.16
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	87.15
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	87.12
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	87.12
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	87.09
cd03246	173	ABCC_Protease_Secretion This family represents the	87.09
cd03234	226	ABCG_White The White subfamily represents ABC tran	87.08
KOG2546|consensus	483		87.08
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	87.06
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	87.04
PRK12339	197	2-phosphoglycerate kinase; Provisional	87.04
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	87.04
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	87.02
KOG2528|consensus	490		87.02
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	87.01
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	86.99
cd03239	178	ABC_SMC_head The structural maintenance of chromos	86.99
PRK10908	222	cell division protein FtsE; Provisional	86.98
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	86.98
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	86.96
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	86.95
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	86.89
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	86.83
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	86.81
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	86.77
KOG0058|consensus	716		86.76
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	86.75
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	86.74
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	86.7
KOG3523|consensus	695		86.64
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	86.64
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	86.62
KOG3875|consensus	362		86.58
PF09439	181	SRPRB: Signal recognition particle receptor beta s	86.56
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	86.54
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	86.54
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	86.53
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	86.52
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	86.49
cd03216	163	ABC_Carb_Monos_I This family represents the domain	86.45
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	86.42
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	86.42
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	86.41
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	86.38
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	86.38
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	86.35
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	86.34
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	86.32
PRK08903	227	DnaA regulatory inactivator Hda; Validated	86.31
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	86.24
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	86.22
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	86.21
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	86.18
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	86.14
PRK03846	198	adenylylsulfate kinase; Provisional	86.13
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	86.09
PRK08099	399	bifunctional DNA-binding transcriptional repressor	86.08
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	86.07
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	86.03
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	85.99
PRK14529	223	adenylate kinase; Provisional	85.99
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	85.97
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	85.96
PRK04182	180	cytidylate kinase; Provisional	85.96
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	85.92
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	85.79
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	85.78
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	85.77
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	85.74
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	85.71
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	85.71
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	85.7
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	85.7
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	85.65
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	85.61
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	85.58
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	85.57
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	85.54
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	85.53
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	85.5
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	85.5
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	85.49
cd03215	182	ABC_Carb_Monos_II This family represents domain II	85.49
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	85.48
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	85.48
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	85.44
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	85.41
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	85.41
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	85.4
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	85.39
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	85.33
PRK13948	182	shikimate kinase; Provisional	85.29
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	85.29
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	85.26
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	85.26
PRK14526	211	adenylate kinase; Provisional	85.25
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	85.25
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	85.25
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	85.25
COG4639	168	Predicted kinase [General function prediction only	85.25
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	85.25
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	85.24
COG1100	219	GTPase SAR1 and related small G proteins [General	85.17
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	85.13
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	85.13
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	85.12
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	85.11
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	85.1
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	85.09
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	85.09
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	85.03
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	85.03
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	85.02
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	85.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	85.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	85.0
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	84.98
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	84.98
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	84.98
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	84.97
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	84.97
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	84.96
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	84.94
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	84.92
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	84.86
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	84.85
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	84.83
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	84.79
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	84.74
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	84.73
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	84.72
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	84.7
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	84.65
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	84.59
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	84.59
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	84.57
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	84.57
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	84.56
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	84.55
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	84.53
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	84.52
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	84.52
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	84.51
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	84.51
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	84.51
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	84.51
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	84.49
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	84.48
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	84.47
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	84.44
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	84.43
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	84.42
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	84.4
PRK12289	352	GTPase RsgA; Reviewed	84.4
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	84.38
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	84.36
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	84.33
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	84.31
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	84.31
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	84.27
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	84.26
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	84.16
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	84.13
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	84.12
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	84.12
PRK09984	262	phosphonate/organophosphate ester transporter subu	84.09
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	84.08
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	84.08
PRK08084	235	DNA replication initiation factor; Provisional	84.03
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	84.03
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	84.02
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	84.01
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	84.01
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	83.99
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	83.98
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	83.97
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	83.96
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	83.96
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	83.94
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	83.92
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	83.88
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	83.88
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	83.88
PRK12288	347	GTPase RsgA; Reviewed	83.83
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	83.8
KOG0744|consensus	423		83.78
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	83.77
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	83.75
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	83.71
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	83.7
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	83.7
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	83.68
PRK03695	248	vitamin B12-transporter ATPase; Provisional	83.58
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	83.57
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	83.57
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	83.55
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	83.51
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	83.46
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	83.43
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	83.42
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	83.41
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	83.4
PRK06893	229	DNA replication initiation factor; Validated	83.38
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	83.36
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	83.34
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	83.34
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	83.28
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	83.27
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	83.26
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	83.26
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	83.25
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	83.15
PRK00625	173	shikimate kinase; Provisional	83.15
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	83.11
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	83.1
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	83.1
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	83.08
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	83.06
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	83.05
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	83.04
COG3638	258	ABC-type phosphate/phosphonate transport system, A	83.04
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	83.02
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	83.0
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	82.99
PHA00729	226	NTP-binding motif containing protein	82.99
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	82.97
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	82.97
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	82.95
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	82.94
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	82.93
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	82.93
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	82.93
PLN02748	468	tRNA dimethylallyltransferase	82.88
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	82.85
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	82.82
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	82.8
TIGR00101	199	ureG urease accessory protein UreG. This model rep	82.78
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	82.76
PF13245	76	AAA_19: Part of AAA domain	82.71
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	82.71
PLN02459	261	probable adenylate kinase	82.71
PRK13851	344	type IV secretion system protein VirB11; Provision	82.71
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	82.66
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	82.65
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	82.65
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	82.65
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	82.64
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	82.63
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	82.63
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	82.62
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	82.61
PRK07667	193	uridine kinase; Provisional	82.61
PRK13546	264	teichoic acids export protein ATP-binding subunit;	82.47
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	82.45
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	82.44
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	82.33
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	82.3
PRK06620	214	hypothetical protein; Validated	82.29
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	82.28
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	82.26
cd03116	159	MobB Molybdenum is an essential trace element in t	82.25
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	82.24
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	82.18
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	82.17
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	82.16
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	82.14
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	82.11
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	82.09
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	82.08
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	82.05
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	82.03
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	82.0
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	81.98
PRK08727	233	hypothetical protein; Validated	81.97
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	81.96
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	81.91
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	81.9
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	81.88
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	81.82
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	81.78
PRK13537	306	nodulation ABC transporter NodI; Provisional	81.78
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	81.67
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	81.67
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	81.64
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	81.64
PRK13536	340	nodulation factor exporter subunit NodI; Provision	81.61
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	81.61
PRK15455	644	PrkA family serine protein kinase; Provisional	81.56
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	81.55
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	81.54
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	81.54
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	81.54
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	81.54

>KOG0609|consensus

Probab=100.00  E-value=9.4e-51  Score=410.22  Aligned_cols=214  Identities=54%  Similarity=0.922  Sum_probs=196.2

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC--CCceeeecCChhHHHHhhhcccccccc
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV--AGSAGLIPSPELQEWRTACSTIDKTKH  142 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~--~g~~GlIPS~~v~e~r~a~~~~~~~~~  142 (352)
                      .+|+||+|||||.+|+.|||+|++|+|++||||+|++++|.+||||++.++  .+.+|+|||+.+++++.++.....++.
T Consensus       214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~~~~~~  293 (542)
T KOG0609|consen  214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRREVSKE  293 (542)
T ss_pred             eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHHHHHHhhhcccC
Confidence            389999999999999999999999999999999999999999999999874  578999999999999999876544322


Q ss_pred             c-cccccccccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCcccccc
Q psy12793        143 E-QVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP  221 (352)
Q Consensus       143 ~-~~~~~~~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~  221 (352)
                      . ...|.++++|||..+.+|+.++++.+++.++++||||++|+++.+|+|||+||+|||+++|+++|+..+|++|+++||
T Consensus       294 ~~~~~c~~l~kkkk~~~~~y~~~~~~~~d~~~~~tYEEV~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VP  373 (542)
T KOG0609|consen  294 PEKTRCQRLSKKKKKKKSKYLGKHSAVFDQPELLTYEEVVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVP  373 (542)
T ss_pred             CcCchhcccchhhhhhhhhhhhhcchhhhccccccHHHHhhhcccccceEEEECCcccchHHHHHHHHhhCccccccCCC
Confidence            2 237888888877677779999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCCC
Q psy12793        222 QFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRS  301 (352)
Q Consensus       222 ~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~  301 (352)
                      |                                                                        |||+||+
T Consensus       374 h------------------------------------------------------------------------TtR~~r~  381 (542)
T KOG0609|consen  374 H------------------------------------------------------------------------TTRPPRS  381 (542)
T ss_pred             C------------------------------------------------------------------------cCCCCCC
Confidence            9                                                                        9999999


Q ss_pred             CCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHHHHHcCcccc
Q psy12793        302 DEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRHIVSCRKLVV  350 (352)
Q Consensus       302 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  350 (352)
                      +|.||++|||||+++|+.+|++|+|||||+.-.     ...++|.++..||..|
T Consensus       382 ~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicv  435 (542)
T KOG0609|consen  382 DEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLYGTSLDSVRNVIASGKICV  435 (542)
T ss_pred             CCCCCccceeeehHHHhhhhhcCCceecCcchhccccchHHHHHHHHHhCCEEE
Confidence            999999999999999999999999999998754     4689999999998765

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=99.81  E-value=5.4e-20  Score=167.39  Aligned_cols=90  Identities=28%  Similarity=0.487  Sum_probs=84.1

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  266 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~  266 (352)
                      ++.++||+|||||||+||.++|.+.+  .|.+++++                                            
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~--------------------------------------------   36 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSA--------------------------------------------   36 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEe--------------------------------------------
Confidence            57899999999999999999999988  68899999                                            


Q ss_pred             HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793        267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH  341 (352)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  341 (352)
                                                  |||+||++|.||++|||||++||+.+|.+++||||++...     ..+.++.
T Consensus        37 ----------------------------TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~~~~ve~   88 (191)
T COG0194          37 ----------------------------TTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTSREPVEQ   88 (191)
T ss_pred             ----------------------------ccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCcHHHHHH
Confidence                                        9999999999999999999999999999999999998876     4588999


Q ss_pred             HHHcCcccc
Q psy12793        342 IVSCRKLVV  350 (352)
Q Consensus       342 ~~~~~~~~~  350 (352)
                      ++..|+.||
T Consensus        89 ~~~~G~~vi   97 (191)
T COG0194          89 ALAEGKDVI   97 (191)
T ss_pred             HHhcCCeEE
Confidence            999999876

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=99.80  E-value=1.1e-19  Score=162.74  Aligned_cols=91  Identities=33%  Similarity=0.615  Sum_probs=80.8

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHH
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA  267 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~  267 (352)
                      +|+|||+||+||||++|.++|+..+|+.|.+++++                                             
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~---------------------------------------------   36 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSH---------------------------------------------   36 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEE---------------------------------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceee---------------------------------------------
Confidence            68999999999999999999999999999999999                                             


Q ss_pred             HhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHHH
Q psy12793        268 CSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRHI  342 (352)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  342 (352)
                                                 |||+||++|.||.+|||||+++|++++++++||||++.-.     +..+++.+
T Consensus        37 ---------------------------TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt~~~~i~~~   89 (183)
T PF00625_consen   37 ---------------------------TTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGTSKSAIDKV   89 (183)
T ss_dssp             ---------------------------ESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEEEHHHHHHH
T ss_pred             ---------------------------cccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhhccchhhHh
Confidence                                       9999999999999999999999999999999999997532     45888999


Q ss_pred             HHcCcccc
Q psy12793        343 VSCRKLVV  350 (352)
Q Consensus       343 ~~~~~~~~  350 (352)
                      +..|+.+|
T Consensus        90 ~~~gk~~i   97 (183)
T PF00625_consen   90 LEEGKHCI   97 (183)
T ss_dssp             HHTTTEEE
T ss_pred             hhcCCcEE
Confidence            99998875

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.78  E-value=8.5e-19  Score=159.23  Aligned_cols=91  Identities=23%  Similarity=0.478  Sum_probs=82.2

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  266 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~  266 (352)
                      .+++|||+|||||||+||.++|++.+|+. .+++++                                            
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~--------------------------------------------   37 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISC--------------------------------------------   37 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCc--------------------------------------------
Confidence            46899999999999999999999999884 577888                                            


Q ss_pred             HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793        267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH  341 (352)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  341 (352)
                                                  |||+||++|.||++|||||+++|+.+|++++||||++...     ....++.
T Consensus        38 ----------------------------TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt~~~~i~~   89 (186)
T PRK14737         38 ----------------------------TTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGTPKAFIED   89 (186)
T ss_pred             ----------------------------cCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecCcHHHHHH
Confidence                                        9999999999999999999999999999999999998554     3466889


Q ss_pred             HHHcCcccc
Q psy12793        342 IVSCRKLVV  350 (352)
Q Consensus       342 ~~~~~~~~~  350 (352)
                      ++..|+.+|
T Consensus        90 ~~~~g~~~i   98 (186)
T PRK14737         90 AFKEGRSAI   98 (186)
T ss_pred             HHHcCCeEE
Confidence            999999875

>smart00072 GuKc Guanylate kinase homologues

Probab=99.74  E-value=8.1e-18  Score=151.18  Aligned_cols=92  Identities=34%  Similarity=0.591  Sum_probs=84.7

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  266 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~  266 (352)
                      ++++|||+|||||||+|+.++|+..+|+.|.+++++                                            
T Consensus         1 ~~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~--------------------------------------------   36 (184)
T smart00072        1 DRRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSH--------------------------------------------   36 (184)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeee--------------------------------------------
Confidence            368999999999999999999999999889999999                                            


Q ss_pred             HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793        267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH  341 (352)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  341 (352)
                                                  |||++|++|.+|.+|+|+|+++|+++|++++|+||++...     +.++++.
T Consensus        37 ----------------------------TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~~~~i~~   88 (184)
T smart00072       37 ----------------------------TTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTSKETIRQ   88 (184)
T ss_pred             ----------------------------cCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccCHHHHHH
Confidence                                        9999999999999999999999999999999999998766     4567888


Q ss_pred             HHHcCcccc
Q psy12793        342 IVSCRKLVV  350 (352)
Q Consensus       342 ~~~~~~~~~  350 (352)
                      ++..++.+|
T Consensus        89 ~~~~~~~~i   97 (184)
T smart00072       89 VAEQGKHCL   97 (184)
T ss_pred             HHHcCCeEE
Confidence            888888765

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PLN02772 guanylate kinase

Probab=99.73  E-value=1.2e-17  Score=167.28  Aligned_cols=104  Identities=26%  Similarity=0.464  Sum_probs=93.9

Q ss_pred             ccceeeEeccC----CCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCC
Q psy12793        175 VTYEEVVKLPS----FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVA  250 (352)
Q Consensus       175 ~sYEeV~~~p~----~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~  250 (352)
                      ..-|||+.+++    ..+++|||+|||||||+||.++|+..+|..|.++++|                            
T Consensus       118 ~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vsh----------------------------  169 (398)
T PLN02772        118 LLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSH----------------------------  169 (398)
T ss_pred             cccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccc----------------------------
Confidence            45789998862    3678999999999999999999999999889999999                            


Q ss_pred             CCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEE
Q psy12793        251 GSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG  330 (352)
Q Consensus       251 ~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (352)
                                                                  |||+||++|.||.+|||+|+++|+.++++++|+||+
T Consensus       170 --------------------------------------------TTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~  205 (398)
T PLN02772        170 --------------------------------------------TTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFA  205 (398)
T ss_pred             --------------------------------------------cCCCCcccccCCceEeeCCHHHHHHHHHhCccceee
Confidence                                                        999999999999999999999999999999999999


Q ss_pred             eecc-----ChhhHHHHHHcCcccc
Q psy12793        331 KSIL-----THPSQRHIVSCRKLVV  350 (352)
Q Consensus       331 ~~~~-----~~~~~~~~~~~~~~~~  350 (352)
                      +...     ...+++.++..|+.+|
T Consensus       206 e~~Gn~YGTsk~~V~~vl~~Gk~vI  230 (398)
T PLN02772        206 SVHGNLYGTSIEAVEVVTDSGKRCI  230 (398)
T ss_pred             eecCccccccHHHHHHHHHhCCcEE
Confidence            8765     3578889999998876

>KOG4792|consensus

Probab=99.63  E-value=4.8e-16  Score=144.57  Aligned_cols=105  Identities=29%  Similarity=0.578  Sum_probs=87.6

Q ss_pred             ccccCCCCCCcccc--ceeeec-ccCCCCCCCCCccccc-CcccccccceeeeeeeccccCCCCCCCCcCcCcccccccC
Q psy12793         19 SRKEGDRYLSTYLQ--IFVRAQ-FNYNPLDDDLIPCAQA-GIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIG   94 (352)
Q Consensus        19 ~~~~gd~~~~~~~~--~fvra~-fdy~p~~d~~IP~~e~-gl~fk~gdilqi~vRAlfDYdp~~d~~iPc~e~~LsF~kG   94 (352)
                      +.+|||+.|+++|.  .|+|+| +|++++..++-...++ ++.+  .+.-.+||+|+|||.+.+..       +|+|++|
T Consensus        76 ~~rIgdQ~Fd~lPaLL~fykihyLdtttLi~p~~r~~~~~~~~~--~~~~~~~vr~~fdF~G~dee-------DLPFkkG  146 (293)
T KOG4792|consen   76 RLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPAKRSRQGSGVIL--RQEEAEYVRALFDFNGNDEE-------DLPFKKG  146 (293)
T ss_pred             eeeeccccccchHHHHhheeEeeeccccccccccccccccCccc--chhhhhheeeeeccCCCccc-------cCCcccC
Confidence            78999999999887  799999 9999999876433332 3333  23334799999999998754       5999999


Q ss_pred             ceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhhh
Q psy12793         95 DILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTAC  134 (352)
Q Consensus        95 DIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a~  134 (352)
                      +||.|+++..+.||.||  |..|..|+||.+|++.++.++
T Consensus       147 eiL~I~~K~eeqWW~Ar--ns~Gk~GmIPvpYVe~~~~~~  184 (293)
T KOG4792|consen  147 EILRIRDKPEEQWWNAR--NSEGKRGMIPVPYVEKYRPAS  184 (293)
T ss_pred             cEEEEecCcHHHhhhhh--ccCCcccceechHHHhhhhhh
Confidence            99999999999999999  678999999999999988776

>PRK14738 gmk guanylate kinase; Provisional

Probab=99.59  E-value=5e-15  Score=135.93  Aligned_cols=93  Identities=24%  Similarity=0.392  Sum_probs=82.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHH
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  264 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~  264 (352)
                      ++.+++|||+|||||||+||.++|.+..+ .|.+++++                                          
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~------------------------------------------   46 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTA------------------------------------------   46 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccc------------------------------------------
Confidence            56789999999999999999999987655 58788888                                          


Q ss_pred             HHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccC-----hhhH
Q psy12793        265 RTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILT-----HPSQ  339 (352)
Q Consensus       265 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~  339 (352)
                                                    |||.+|++|.+|.+|+|+|.++|+.+++++.|+||++....     ..++
T Consensus        47 ------------------------------ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~YGt~~~~i   96 (206)
T PRK14738         47 ------------------------------TTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYYGVPKAPV   96 (206)
T ss_pred             ------------------------------cCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCceecCCHHHH
Confidence                                          99999999999999999999999999999999999987763     3678


Q ss_pred             HHHHHcCcccc
Q psy12793        340 RHIVSCRKLVV  350 (352)
Q Consensus       340 ~~~~~~~~~~~  350 (352)
                      +.++..|+.||
T Consensus        97 ~~~~~~g~~vi  107 (206)
T PRK14738         97 RQALASGRDVI  107 (206)
T ss_pred             HHHHHcCCcEE
Confidence            88899998654

>KOG0708|consensus

Probab=99.51  E-value=1.1e-14  Score=143.60  Aligned_cols=184  Identities=27%  Similarity=0.461  Sum_probs=137.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC---CCceeeecCChhHHHHhhhcccccccc
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV---AGSAGLIPSPELQEWRTACSTIDKTKH  142 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~---~g~~GlIPS~~v~e~r~a~~~~~~~~~  142 (352)
                      .+++++|||+...+.  |....+++|..||++++++..+..||++|++..   ....|++|+....+++...+....   
T Consensus        67 ~~v~~~~d~d~~~~~--~~~~~~~~~~~~~i~~~~~~~~~e~~~~r~~s~~~~~~~~~~~~~~~~~~rr~r~r~k~~---  141 (359)
T KOG0708|consen   67 LYVDALFDYDLDRGS--PGYSRAQSFLYGQILHLISRSDDEWWQARHVSPRGEEKDVGLVPSKSRRARRVRLRLKRD---  141 (359)
T ss_pred             eEeeccccccccCCC--CCcchhhhhhhhhhhhccccccHHHHHhhccCCCcccccccccccccccccccccccccc---
Confidence            689999999998764  444468999999999999999999999998643   445799999766554433221100   


Q ss_pred             ccccccccccccccccc--cc--cccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccc
Q psy12793        143 EQVNCSIFGRKKKLYKD--KY--LAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAY  218 (352)
Q Consensus       143 ~~~~~~~~~rkkk~~k~--~~--~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~  218 (352)
                         .+ .++++++..+.  ..  ....+.......+++||.|.++.....|||+|+||.   +.-|.+.|++++|++|..
T Consensus       142 ---~f-~~~~~~~~~~s~d~~~~~~~~~~~~~e~~~lsY~~V~~~~~~~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~  214 (359)
T KOG0708|consen  142 ---SF-NSGRDFPFLLSKDGLDMSSDENELGKELSLLSYELVERLDSNYLRPVLILGPL---LDRLLDNLVNEFPDKFKS  214 (359)
T ss_pred             ---cc-cccCCcccccCcccccccccccccccccccccchhhhhhhccccCceEeccch---HHHHHHHHHHhhhccccc
Confidence               00 01111111111  11  012223334456899999999999999999999998   677999999999999999


Q ss_pred             cccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCC
Q psy12793        219 PVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRS  298 (352)
Q Consensus       219 ~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~  298 (352)
                      ++++                                                                        |+|+
T Consensus       215 C~~~------------------------------------------------------------------------t~~~  222 (359)
T KOG0708|consen  215 CLPE------------------------------------------------------------------------TLRP  222 (359)
T ss_pred             cchh------------------------------------------------------------------------hhcc
Confidence            9999                                                                        7776


Q ss_pred             CCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeec-----cChhhHHHHHHcCc
Q psy12793        299 PRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSI-----LTHPSQRHIVSCRK  347 (352)
Q Consensus       299 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  347 (352)
                      .              +++|+.+++++.|||||..-     .+..+++.+...++
T Consensus       223 ~--------------~~eme~~~k~~~fI~~~q~~~~~~~tsv~si~~va~k~~  262 (359)
T KOG0708|consen  223 S--------------REEMERDSKEETFIDAGQRSNGLYGTSVASIREVAEKGK  262 (359)
T ss_pred             c--------------HHHhhhhcccCceeeecccCCCcceehHHHHHHHhcCCC
Confidence            6              89999999999999999876     35678888888887

>KOG0707|consensus

Probab=99.50  E-value=3.5e-14  Score=132.93  Aligned_cols=96  Identities=26%  Similarity=0.493  Sum_probs=81.7

Q ss_pred             cCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHH
Q psy12793        184 PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  263 (352)
Q Consensus       184 p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~  263 (352)
                      ++...+++||+||+|+||.++..+|++++|..|++++++                                         
T Consensus        33 ~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~-----------------------------------------   71 (231)
T KOG0707|consen   33 PPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSH-----------------------------------------   71 (231)
T ss_pred             CCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecC-----------------------------------------
Confidence            455569999999999999999999999999999999999                                         


Q ss_pred             HHHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccCh-----hh
Q psy12793        264 WRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTH-----PS  338 (352)
Q Consensus       264 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  338 (352)
                                                     |||.||..|+||.+|||++.++|..++.++.||||......+     ..
T Consensus        72 -------------------------------ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn~yGtsi~a  120 (231)
T KOG0707|consen   72 -------------------------------TTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGNKYGTSIAA  120 (231)
T ss_pred             -------------------------------CCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcccCCchHHH
Confidence                                           999999999999999999999999999999999954333221     45


Q ss_pred             HHHHHHcCccccC
Q psy12793        339 QRHIVSCRKLVVN  351 (352)
Q Consensus       339 ~~~~~~~~~~~~~  351 (352)
                      ++.+...++..++
T Consensus       121 v~~~~~~gk~~il  133 (231)
T KOG0707|consen  121 VQRLMLSGKVCIL  133 (231)
T ss_pred             HHHHHhcCCccee
Confidence            5666666665553

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=99.50  E-value=1.2e-13  Score=119.36  Aligned_cols=89  Identities=28%  Similarity=0.541  Sum_probs=79.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACS  269 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~  269 (352)
                      +|+|+||+||||+|+.+.|++.++..|.+.+++                                               
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~-----------------------------------------------   33 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSH-----------------------------------------------   33 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccc-----------------------------------------------
Confidence            589999999999999999999988888888888                                               


Q ss_pred             hhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHHHHH
Q psy12793        270 TIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRHIVS  344 (352)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  344 (352)
                                               |||+|+.+|.+|.+|+|++.++|.++++++.|+||++...     ....+..++.
T Consensus        34 -------------------------tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~~~i~~~~~   88 (137)
T cd00071          34 -------------------------TTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSKAAVEEALA   88 (137)
T ss_pred             -------------------------cccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcHHHHHHHHh
Confidence                                     9999999999999999999999999999999999886654     3456788888


Q ss_pred             cCcccc
Q psy12793        345 CRKLVV  350 (352)
Q Consensus       345 ~~~~~~  350 (352)
                      .++++|
T Consensus        89 ~g~~~i   94 (137)
T cd00071          89 EGKIVI   94 (137)
T ss_pred             CCCeEE
Confidence            888775

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>KOG1029|consensus

Probab=99.45  E-value=6.5e-14  Score=147.15  Aligned_cols=156  Identities=21%  Similarity=0.334  Sum_probs=100.6

Q ss_pred             ccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH-HHhhh-ccccccccccccccccccccccccccccccC
Q psy12793         88 GIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE-WRTAC-STIDKTKHEQVNCSIFGRKKKLYKDKYLAKH  165 (352)
Q Consensus        88 ~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e-~r~a~-~~~~~~~~~~~~~~~~~rkkk~~k~~~~~k~  165 (352)
                      +|.|..||.+.|+.++ ++||.++.   .++.|++|++|... ..... .+..+        ...+.|+...-.+..+..
T Consensus       922 dlt~~egd~iLvtekd-geww~gt~---~~r~gifPan~y~r~~~q~gs~Tp~k--------~g~~~kkpeiAqVia~yv  989 (1118)
T KOG1029|consen  922 DLTFHEGDEILVTEKD-GEWWTGTC---GDREGIFPANYYVRPKDQEGSGTPPK--------QGPTPKKPEIAQVIADYV  989 (1118)
T ss_pred             CccccccceEEEeecc-Cceecccc---CCccccccccceeeehhccCCCCCCC--------CCCCCCCchhhhhhhhhh
Confidence            7999999999999765 57998873   56899999996532 11111 01000        001111111111111122


Q ss_pred             CccccccccccceeeEeccC---------------------CCCcEEEEEcCCCCChhHHHHHHHhhCCCCcccccccc-
Q psy12793        166 NAVFDQLDLVTYEEVVKLPS---------------------FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQF-  223 (352)
Q Consensus       166 ~~~~~~~~i~sYEeV~~~p~---------------------~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~-  223 (352)
                      .+..++..+...+-|.....                     |+.--|-|++| |+||.|...+.++++..+|+|.++++ 
T Consensus       990 As~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~-~s~raTPa~~~v~qviamYdY~AqndD 1068 (1118)
T KOG1029|consen  990 ASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEP-GSGRATPATRPVCQVIAMYDYEAQNDD 1068 (1118)
T ss_pred             ccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccC-CCCcCCCCCCccceeEEeeccccCCcc
Confidence            22233444444444432211                     22233555566 48999999999999999999999988 


Q ss_pred             --ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        224 --ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       224 --~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                        +|.|||||+|+.|++++||++.+   +|.+|||||.
T Consensus      1069 ELsF~kgdiI~VlnkdepeWW~Ge~---ng~sGLFPSN 1103 (1118)
T KOG1029|consen 1069 ELSFKKGDIINVLNKDEPEWWSGER---NGKSGLFPSN 1103 (1118)
T ss_pred             cccccCCCEEEecCCCChhhhcccc---cCccccCccc
Confidence              99999999999999999996655   4889999994

>PRK00300 gmk guanylate kinase; Provisional

Probab=99.22  E-value=6.8e-11  Score=106.83  Aligned_cols=91  Identities=26%  Similarity=0.501  Sum_probs=78.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  266 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~  266 (352)
                      .+++|+|+|||||||+|+.+.|....| .|.+.+++                                            
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~--------------------------------------------   38 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSA--------------------------------------------   38 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCc--------------------------------------------
Confidence            568999999999999999999999887 46667777                                            


Q ss_pred             HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793        267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH  341 (352)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  341 (352)
                                                  |||+|+.+|.+|.+|+|++.++|..++.++.|+++++...     ....+..
T Consensus        39 ----------------------------~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~   90 (205)
T PRK00300         39 ----------------------------TTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGTPRSPVEE   90 (205)
T ss_pred             ----------------------------cccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccCcHHHHHH
Confidence                                        9999999999999999999999999999999999886544     2455777


Q ss_pred             HHHcCcccc
Q psy12793        342 IVSCRKLVV  350 (352)
Q Consensus       342 ~~~~~~~~~  350 (352)
                      ++..|+.||
T Consensus        91 ~l~~g~~vi   99 (205)
T PRK00300         91 ALAAGKDVL   99 (205)
T ss_pred             HHHcCCeEE
Confidence            788887664

>TIGR03263 guanyl_kin guanylate kinase

Probab=99.20  E-value=9.3e-11  Score=103.69  Aligned_cols=90  Identities=28%  Similarity=0.524  Sum_probs=75.7

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHH
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA  267 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~  267 (352)
                      +++|+|+||+||||+|+.+.|+...+. +...+.+                                             
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~~-~~~~~~~---------------------------------------------   34 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDPN-LKFSISA---------------------------------------------   34 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCcc-ccccccc---------------------------------------------
Confidence            468999999999999999999998877 4455666                                             


Q ss_pred             HhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHHH
Q psy12793        268 CSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRHI  342 (352)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  342 (352)
                                                 |||+|+.+|.+|.+|+|++.++|..++..++|++|++...     .......+
T Consensus        35 ---------------------------~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~i~~~   87 (180)
T TIGR03263        35 ---------------------------TTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPKSPVEEA   87 (180)
T ss_pred             ---------------------------eeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcHHHHHHH
Confidence                                       8999999999999999999999999999999999885433     13456777


Q ss_pred             HHcCcccc
Q psy12793        343 VSCRKLVV  350 (352)
Q Consensus       343 ~~~~~~~~  350 (352)
                      +..|+.||
T Consensus        88 ~~~g~~vi   95 (180)
T TIGR03263        88 LAAGKDVL   95 (180)
T ss_pred             HHCCCeEE
Confidence            77777765

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG0609|consensus

Probab=99.09  E-value=6.3e-11  Score=121.56  Aligned_cols=93  Identities=30%  Similarity=0.416  Sum_probs=72.0

Q ss_pred             ccccceeEEEeecCCcchhhhhccC--CCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCCC
Q psy12793        224 ITVCSVMFQIISKDDHNWWQARKDN--VAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRS  301 (352)
Q Consensus       224 ~~~~~~~~~vl~k~~~~w~~~~~~~--~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~  301 (352)
                      +|.+|||++|++|+|++||||+++|  ..+.+|||||++|||||.+|.....++..++.   ||...+.  .+....++ 
T Consensus       239 ~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qerr~a~~~~~~~~~~~~~---~c~~l~k--kkk~~~~~-  312 (542)
T KOG0609|consen  239 PFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQERRVACLRREVSKEPEKT---RCQRLSK--KKKKKKSK-  312 (542)
T ss_pred             cccccceeeeccCCCcchhhhhcccCccccccccccCHHHHHHHHHHHhhhcccCCcCc---hhcccch--hhhhhhhh-
Confidence            8999999999999999999999999  57999999999999999999999877665554   4433311  11212222 


Q ss_pred             CC----cCCcceEEecHHHHHHHHH
Q psy12793        302 DE----ENGRAYYFISHDEMMSDIA  322 (352)
Q Consensus       302 ~e----~~~~~~~~~~~~~~~~~~~  322 (352)
                      |+    ..++.-.++|+||+..|-.
T Consensus       313 y~~~~~~~~d~~~~~tYEEV~~~~~  337 (542)
T KOG0609|consen  313 YLGKHSAVFDQPELLTYEEVVRYPP  337 (542)
T ss_pred             hhhhcchhhhccccccHHHHhhhcc
Confidence            44    4456667899999998876

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.03  E-value=2.3e-10  Score=82.96  Aligned_cols=49  Identities=33%  Similarity=0.862  Sum_probs=42.3

Q ss_pred             eccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         70 AQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        70 AlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      |+|||.|..++       +|+|++||+|.|+.+.+++||.++.   .++.|+||++|++
T Consensus         1 Al~~y~~~~~d-------ELs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPD-------ELSFKKGDVITVLEKSDDGWWYGRN---TGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTT-------B-EB-TTEEEEEEEESSTSEEEEEE---TTEEEEEEGGGEE
T ss_pred             CCccCCCCCcC-------EeeEcCCCEEEEEEeCCCCEEEEEE---CCEEEEECHHhCC
Confidence            68999999875       6999999999999998999999984   6899999999974

...

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=98.99  E-value=5.3e-10  Score=80.11  Aligned_cols=48  Identities=35%  Similarity=0.945  Sum_probs=42.0

Q ss_pred             eeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecC
Q psy12793         69 RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS  124 (352)
Q Consensus        69 RAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS  124 (352)
                      +|+|||++..++       +|+|++||+|.|++..+.+||.++..+ +++.|+||+
T Consensus         1 ~Alydf~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~~-~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPD-------ELSFKKGDIIEVLEKSDDGWWKVRNES-TGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTT-------BSEB-TTEEEEEEEESSSSEEEEEETT-TTEEEEEEG
T ss_pred             CCCeeeCCCCCC-------EEeEECCCEEEEEEecCCCEEEEEECC-CCcEEEeeC
Confidence            689999999865       699999999999999999999999754 478999996

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=98.90  E-value=1.4e-09  Score=80.11  Aligned_cols=53  Identities=36%  Similarity=0.840  Sum_probs=44.2

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEe-eccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQII-SKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl-~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|++||.+..++       +|+|++||+++|+ ++.+++||.++.   +++.|+||++++++
T Consensus         1 ~~~a~~d~~~~~~~-------~Ls~~~Gd~i~v~~~~~~~~ww~~~~---~g~~G~~P~~~v~~   54 (55)
T PF07653_consen    1 YYRAIFDYVAEDPD-------ELSFKKGDVIEVLGEKDDDGWWLGEN---NGRRGWFPSSYVEE   54 (55)
T ss_dssp             EEEESSSBESSSTT-------B-EB-TTEEEEEEEEECSTSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             CEEEeEEECCCCCC-------ceEEecCCEEEEEEeecCCCEEEEEE---CCcEEEEcHHHEEE
Confidence            47899999997654       6999999999999 888889999985   68899999998864

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG3580|consensus

Probab=98.89  E-value=1.6e-09  Score=112.35  Aligned_cols=196  Identities=18%  Similarity=0.226  Sum_probs=121.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC----CCceEEEEcCC---CCceeeecCChhHHHHhhhcccc
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD----HNWWQARKDNV---AGSAGLIPSPELQEWRTACSTID  138 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D----~~WWqaR~~~~---~g~~GlIPS~~v~e~r~a~~~~~  138 (352)
                      +|+|..|.|.+....       +|.|.+||||+|+++-.    .+|...| .+.   ....|+||.+..+|+-.+.....
T Consensus       505 FyIRtHFE~Eke~P~-------gL~FtrGeVFrvvDTLy~GklG~WLAvR-iG~dlrE~ErGiIPNksRAEQlASvq~aq  576 (1027)
T KOG3580|consen  505 FYIRTHFECEKETPQ-------GLAFTRGEVFRVVDTLYDGKLGNWLAVR-IGNDLRELERGIIPNKSRAEQLASVQNAQ  576 (1027)
T ss_pred             eEEeeeeeecCCCCc-------cccccccceeeeeecccCCCCcceEEEe-ecccHHHHhcccCCCccHHHHHHHHHhhc
Confidence            688999999988753       79999999999999853    3555555 443   44589999999988766544322


Q ss_pred             cc-cc--ccccccccc--cccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        139 KT-KH--EQVNCSIFG--RKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       139 ~~-~~--~~~~~~~~~--rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .. ..  ......+++  +-.|+.-.+++...+...-+..+++||.|++......|||||+||-.   +-.+.+|+++.|
T Consensus       577 r~~agGdRAdFWR~RGlRsg~KknlrkSREDLsA~~vqtkfPaYERVvLREAgFkRPVvifGPiA---DiAmeKLa~E~P  653 (1027)
T KOG3580|consen  577 RDNAGGDRADFWRMRGLRSGVKKNLRKSREDLSAVVVQTKFPAYERVVLREAGFKRPVVIFGPIA---DIAMEKLANELP  653 (1027)
T ss_pred             cccccchHHHHHHHhhhhhhhhhhhhhhhhhhhhceecccCCchhhhhhhhhcccCceEEeccHH---HHHHHHHhhhCc
Confidence            11 11  011111111  10111222333444445556778999999999998999999999994   888899999999


Q ss_pred             CCcccc--cccc-------ccccceeEEEe-ecCCcchhhhhc-----cCC---CCCccccCChhHHHHHHHHhhhc
Q psy12793        214 DKYAYP--VPQF-------ITVCSVMFQII-SKDDHNWWQARK-----DNV---AGSAGLIPSPELQEWRTACSTID  272 (352)
Q Consensus       214 ~~F~~~--v~~~-------~~~~~~~~~vl-~k~~~~w~~~~~-----~~~---~~~~g~~p~~~~~~~r~~~~~~~  272 (352)
                      +.|..+  .+++       ...+++.|++| .++-|.-----+     -++   -+...+|-+.|.|-....+.+.+
T Consensus       654 D~fqiAkteprdag~~~stg~irL~TvrqiieqDKHALLDVTP~AvdrLNY~QwypIVvff~PdSrqgvktmRqrL~  730 (1027)
T KOG3580|consen  654 DWFQIAKTEPRDAGSEKSTGVIRLNTVRQIIEQDKHALLDVTPKAVDRLNYTQWYPIVVFFNPDSRQGVKTMRQRLA  730 (1027)
T ss_pred             chhhhhccccccCCcccccceEEehhhHHHHhcccchhhccCHHHHhhhccceeeeEEEEeCCcchHHHHHHHHHhC
Confidence            998776  4454       13355555444 333332111111     111   23445555666666665555555

>KOG4226|consensus

Probab=98.82  E-value=5.9e-09  Score=99.93  Aligned_cols=186  Identities=20%  Similarity=0.387  Sum_probs=110.0

Q ss_pred             eccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhhhccccccccccccccc
Q psy12793         70 AQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSI  149 (352)
Q Consensus        70 AlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a~~~~~~~~~~~~~~~~  149 (352)
                      --|+|.++..+       +|++.+|+.+.|+++..++||.+..   +|++|++||||+.|......      ....  ++
T Consensus       112 VKf~Y~a~~eD-------ELsLtKGtrv~vmEKssDGWWrG~~---ng~VGWFPSNYv~E~~ds~~------gd~~--s~  173 (379)
T KOG4226|consen  112 VKFNYVAERED-------ELSLTKGTRVTVMEKSSDGWWRGSY---NGQVGWFPSNYVTEEVDSAA------GDSP--SF  173 (379)
T ss_pred             EEEeecccccc-------ccccccCcEEEEEEeccCcceeccc---CCeeccccccceehhccccc------cCCc--cc
Confidence            35889988655       6999999999999999999998763   78999999999976332211      0000  00


Q ss_pred             cccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCcccccccc---ccc
Q psy12793        150 FGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQF---ITV  226 (352)
Q Consensus       150 ~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~---~~~  226 (352)
                      ...++                      |..+...+.  .+.                  +.-+-.+|.|...++   +|.
T Consensus       174 ~~~~~----------------------~A~a~n~~~--s~v------------------l~vVvaLYsFsssndeELsFe  211 (379)
T KOG4226|consen  174 LSLRK----------------------AASASNGQG--SRV------------------LHVVVALYSFSSSNDEELSFE  211 (379)
T ss_pred             eecch----------------------hhcccCCCC--ceE------------------EEEEEEEecccCCChhhcccc
Confidence            00000                      000000000  111                  111123455666555   899


Q ss_pred             cceeEEEeec--CCcchhhhhccCCCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCCCCCc
Q psy12793        227 CSVMFQIISK--DDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEE  304 (352)
Q Consensus       227 ~~~~~~vl~k--~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~  304 (352)
                      ||+...|+++  .|++||-+|..  .|-.||.|..-++..-.--.|           .-...|.-+-.+.-.++--++..
T Consensus       212 KGerleivd~Pe~DPdWwkarn~--~G~vGLVPrNYv~vl~d~~~t-----------s~~~~~s~~pq~sgn~p~~sg~~  278 (379)
T KOG4226|consen  212 KGERLEIVDKPENDPDWWKARNA--RGQVGLVPRNYVVVLSDGPST-----------SKALHPSHAPQISGNGPSSSGRF  278 (379)
T ss_pred             cCceeEeccCCCCCchHHhhccc--CCccceeecceEEEeccCccc-----------cccCCccccccccCCCCCccccc
Confidence            9999999976  78999988653  677888887333222111111           11222222333333444445668


Q ss_pred             CCcceEE--ecHHHHHHHH----HcCcEEE
Q psy12793        305 NGRAYYF--ISHDEMMSDI----AANQYLE  328 (352)
Q Consensus       305 ~~~~~~~--~~~~~~~~~~----~~~~~~~  328 (352)
                      .|+.+||  ||++.-+-.+    ..+.||-
T Consensus       279 ag~~WYyG~itR~qae~~Ln~hG~eGdFLi  308 (379)
T KOG4226|consen  279 AGRPWYYGNITRHQAECALNEHGHEGDFLI  308 (379)
T ss_pred             cCCcceeccccHHHHHHHHhccCccCceEE
Confidence            8999998  7888777666    3456653

>KOG2199|consensus

Probab=98.78  E-value=2e-09  Score=107.29  Aligned_cols=55  Identities=29%  Similarity=0.676  Sum_probs=48.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      .-|||||||.+.+++       +|+|++||||.|++..|.+||.++.   .+..|||||+||...
T Consensus       216 rkVRALYDFeAaE~n-------ELsFkaGdIItVLd~s~~~WWKG~~---~~~~GlFPsnfVT~~  270 (462)
T KOG2199|consen  216 RKVRALYDFEAAEDN-------ELSFKAGDIITVLDDSDPNWWKGEN---HRGIGLFPSNFVTAD  270 (462)
T ss_pred             hhhhhhhcccccCCC-------ccceecCcEEEEcccCCcchhcccc---CCcccccchhhhhhh
Confidence            458999999999876       6999999999999999999998873   567899999999643

>KOG4225|consensus

Probab=98.72  E-value=2.5e-08  Score=100.48  Aligned_cols=59  Identities=25%  Similarity=0.553  Sum_probs=50.4

Q ss_pred             eeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHh
Q psy12793         64 LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  132 (352)
Q Consensus        64 lqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~  132 (352)
                      .....||+|+|.+++..       +|+|++|||+.|+.+.|.+|..+.+   +|+.|++|.+|++....
T Consensus       229 ~~~~aralf~F~~qt~k-------EL~~~kGDIVyI~rkvD~nWyeGEh---hGr~GifP~sYvE~~~~  287 (489)
T KOG4225|consen  229 PKRAARALFDFEAQTPK-------ELPFNKGDIVYILRKVDQNWYEGEH---HGRVGIFPASYVEILTP  287 (489)
T ss_pred             ccchhhheeccccCCcc-------ccccCCCCEEEEEeeccCceeeeee---cceecceechheeecCc
Confidence            33457999999999864       6999999999999999999987764   79999999999985443

>KOG4348|consensus

Probab=98.63  E-value=2.9e-08  Score=100.11  Aligned_cols=60  Identities=28%  Similarity=0.687  Sum_probs=50.4

Q ss_pred             cceeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793         62 DILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  131 (352)
Q Consensus        62 dilqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r  131 (352)
                      +......++.|.|.|.+|+       +|.|+-||||.|+..-.++||.+..   +|..||+||||+.+..
T Consensus        97 q~~~r~c~v~f~Y~pqndD-------ELelkVGDiIeli~eVEeGWw~G~L---ngk~GmFPsNFVkel~  156 (627)
T KOG4348|consen   97 QPQARICVVTFAYSPQNDD-------ELELKVGDIIELISEVEEGWWKGKL---NGKVGMFPSNFVKELP  156 (627)
T ss_pred             CccceeEEEEEeecCCCCc-------eeeeeeccHHHhhhHhhhhhhhcee---cCcccccchhhceecC
Confidence            3333456788999999987       6999999999999999999998873   6899999999997644

>KOG4226|consensus

Probab=98.62  E-value=7.5e-08  Score=92.43  Aligned_cols=145  Identities=19%  Similarity=0.424  Sum_probs=89.8

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhhhcccc--cccc
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTID--KTKH  142 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a~~~~~--~~~~  142 (352)
                      +++|.|-|||.++.+.       +|.+++.+.|-+++. ...||..|  |...+.|++||+|++....+....-  +-+.
T Consensus         4 ~~~vvak~dy~aq~~q-------eldikkner~~lldd-sk~wwrvr--ns~n~tgyvpsnyverkn~~~~~si~knlkd   73 (379)
T KOG4226|consen    4 EVIVVAKWDYTAQQDQ-------ELDIKKNERLWLLDD-SKTWWRVR--NSANRTGYVPSNYVERKNSLKKGSIVKNLKD   73 (379)
T ss_pred             EEEEEEEechhcccch-------hccccccceEEEEcC-Cccceeee--cccccCCcccchhhhcccchhhhHHHHhhhh
Confidence            4788999999998764       799999999999974 45899998  5677899999999975333221100  0000


Q ss_pred             ccccccccccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHh-hCCC--Ccccc
Q psy12793        143 EQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLIN-KFPD--KYAYP  219 (352)
Q Consensus       143 ~~~~~~~~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~-~~p~--~F~~~  219 (352)
                         ......+++   .+.        .++...++-  -..+||                    +++.. ..|.  +|.|.
T Consensus        74 ---~~g~kt~~k---~s~--------~~~~~sp~~--d~~~pp--------------------d~~~~~~t~AvVKf~Y~  117 (379)
T KOG4226|consen   74 ---TLGLKTRRK---TSA--------RDASPSPST--DAEYPP--------------------DRIYDLNTPAVVKFNYV  117 (379)
T ss_pred             ---ccccccccC---CCc--------cccCCCCCc--cccCCc--------------------chhhhcCCceEEEEeec
Confidence               000000111   000        011111110  011222                    11111 1222  47788


Q ss_pred             cccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        220 VPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       220 v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +.+.   ++.||..|-|+.|....||.+   .++|..|.|||
T Consensus       118 a~~eDELsLtKGtrv~vmEKssDGWWrG---~~ng~VGWFPS  156 (379)
T KOG4226|consen  118 AEREDELSLTKGTRVTVMEKSSDGWWRG---SYNGQVGWFPS  156 (379)
T ss_pred             cccccccccccCcEEEEEEeccCcceec---ccCCeeccccc
Confidence            7776   899999999999999999943   23899999999

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=98.62  E-value=6.8e-08  Score=68.21  Aligned_cols=52  Identities=38%  Similarity=0.862  Sum_probs=44.7

Q ss_pred             eeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      ++++++|.+..++       +|+|++||++.|+...+.+||.++..+  ++.|+||..+++
T Consensus         2 ~~a~~~~~~~~~~-------~l~~~~Gd~v~v~~~~~~~w~~~~~~~--~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPD-------ELSFKKGDIIEVLEKSDDGWWEGRLLG--GKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCC-------CCCCCCCCEEEEEEcCCCCeEEEEECC--CCEEEEccccCc
Confidence            5789999998764       699999999999999888999999642  389999998874

>smart00326 SH3 Src homology 3 domains

Probab=98.59  E-value=7.6e-08  Score=68.65  Aligned_cols=53  Identities=38%  Similarity=0.840  Sum_probs=45.5

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      +++|++||.+..++       +|+|++||++.|++..+.+||.++..+  ++.|+||.++++
T Consensus         4 ~~~a~~~~~~~~~~-------~l~~~~Gd~v~v~~~~~~~w~~~~~~~--~~~G~vP~~~v~   56 (58)
T smart00326        4 QVRALYDYTAQDPD-------ELSFKKGDIITVLEKSDDGWWKGRLGR--GKEGLFPSNYVE   56 (58)
T ss_pred             EEEEeeeeCCCCCC-------CCCCCCCCEEEEEEcCCCCeEEEEeCC--CCEEEEchHHEE
Confidence            56899999997654       699999999999999889999998643  889999998864

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG1029|consensus

Probab=98.58  E-value=1.7e-08  Score=107.02  Aligned_cols=53  Identities=36%  Similarity=0.847  Sum_probs=47.6

Q ss_pred             eeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      |.|+|||.+.+|+       +|+|.+||||-|++++|++||++.+   +|..||+|||||+..
T Consensus      1056 viamYdY~AqndD-------ELsF~kgdiI~VlnkdepeWW~Ge~---ng~sGLFPSNYV~k~ 1108 (1118)
T KOG1029|consen 1056 VIAMYDYEAQNDD-------ELSFKKGDIINVLNKDEPEWWSGER---NGKSGLFPSNYVQKQ 1108 (1118)
T ss_pred             eEEeeccccCCcc-------cccccCCCEEEecCCCChhhhcccc---cCccccCcccccccc
Confidence            4599999999987       6999999999999999999998874   689999999999753

>KOG3632|consensus

Probab=98.57  E-value=6.1e-08  Score=104.98  Aligned_cols=96  Identities=31%  Similarity=0.517  Sum_probs=78.6

Q ss_pred             cccceeeecccCCCCCCCCCccc-ccCcccccccceeeee----------------------------------------
Q psy12793         30 YLQIFVRAQFNYNPLDDDLIPCA-QAGIAFQIGDILQIFV----------------------------------------   68 (352)
Q Consensus        30 ~~~~fvra~fdy~p~~d~~IP~~-e~gl~fk~gdilqi~v----------------------------------------   68 (352)
                      +-.+|| |+|||||+.....|.+ +..|+|+.|+|+.|+.                                        
T Consensus      1137 parifV-AlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~rq 1215 (1335)
T KOG3632|consen 1137 PARIFV-ALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWRQ 1215 (1335)
T ss_pred             cceeeE-eeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHHHh
Confidence            344999 9999999998777765 6779999999986553                                        


Q ss_pred             --------------------------------eeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC-
Q psy12793         69 --------------------------------RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV-  115 (352)
Q Consensus        69 --------------------------------RAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~-  115 (352)
                                                      .|.|||+|.+.+..-..+++|.|..|||+.|....|++.+-   .++ 
T Consensus      1216 G~lPsv~~~e~~~gs~~s~g~~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfy---yGel 1292 (1335)
T KOG3632|consen 1216 GLLPSVPTEEMRKGSAFSDGQQKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFY---YGEL 1292 (1335)
T ss_pred             ccCCCCCchhhhcccccCCCCccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCccc---cccc
Confidence                                            46799999987777777899999999999999987766542   233 


Q ss_pred             CCceeeecCChhHH
Q psy12793        116 AGSAGLIPSPELQE  129 (352)
Q Consensus       116 ~g~~GlIPS~~v~e  129 (352)
                      +++.|++|+++++.
T Consensus      1293 ngqkglvpsnfle~ 1306 (1335)
T KOG3632|consen 1293 NGQKGLVPSNFLEA 1306 (1335)
T ss_pred             CCccCccccccccC
Confidence            89999999999875

>KOG1118|consensus

Probab=98.54  E-value=3.2e-08  Score=96.11  Aligned_cols=56  Identities=25%  Similarity=0.621  Sum_probs=49.7

Q ss_pred             eeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         64 LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        64 lqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      -+.++||+|||+|++++       +|.|++||+|.|+++.|++||.+..   .|..|++|++|++.
T Consensus       305 ~~p~cralYdFepenEg-------EL~fkeGDlI~l~~QIdenWyeG~~---~g~sG~FPvnYv~v  360 (366)
T KOG1118|consen  305 DQPCCRALYDFEPENEG-------ELDFKEGDLITLTNQIDENWYEGEK---HGESGMFPVNYVEV  360 (366)
T ss_pred             cchhheeeeccCCCCCC-------ccCcccCceeeehhhcCcchhhhee---cCccCccccceeEE
Confidence            35789999999999865       7999999999999999999999886   46799999999863

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.52  E-value=5.1e-07  Score=80.00  Aligned_cols=53  Identities=13%  Similarity=0.090  Sum_probs=37.7

Q ss_pred             cCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc----ChhhHHHHHHcCcccc
Q psy12793        295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL----THPSQRHIVSCRKLVV  350 (352)
Q Consensus       295 t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~  350 (352)
                      |+|++   +.+|.+|+|++.++|...+.+++|.++.+...    +.......+..++.||
T Consensus        38 ~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~~~~~~g~~vv   94 (179)
T TIGR02322        38 ITRPA---SAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPAEIDQWLEAGDVVV   94 (179)
T ss_pred             cccCC---CCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChHHHHHHHhcCCEEE
Confidence            78864   46799999999999999999999999766521    2223444555555443

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG2070|consensus

Probab=98.39  E-value=2e-07  Score=95.29  Aligned_cols=57  Identities=28%  Similarity=0.722  Sum_probs=50.7

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  131 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r  131 (352)
                      +.+|||-|+|.+.+.+       +|+|.+||||+|+..++++||.+..   +|+.|++||+|+.+..
T Consensus        17 pLvvrAkf~F~gsNnD-------ELsf~KgDvItVTq~eeGGWWEGTl---ng~TGWFPsnYV~eik   73 (661)
T KOG2070|consen   17 PLVVRAKFNFQGSNND-------ELSFSKGDVITVTQVEEGGWWEGTL---NGRTGWFPSNYVREIK   73 (661)
T ss_pred             ceEEEEEeecccCCCc-------eeccccCCEEEEEEeccCcceeccc---cCccCccchHHHHHHh
Confidence            3589999999998765       6999999999999999999998863   7899999999998755

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.38  E-value=1.3e-07  Score=92.75  Aligned_cols=95  Identities=16%  Similarity=0.219  Sum_probs=71.1

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  266 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~  266 (352)
                      +..+|+|+||+||||+++...|++.....+   ++.++...-.-+.|                                 
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~i---is~Ds~Qvy~~l~i---------------------------------   46 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEI---ISADSMQVYRGMDI---------------------------------   46 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcE---Eeccccceeecccc---------------------------------
Confidence            346899999999999999999998765321   22211111111111                                 


Q ss_pred             HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccChhhHHHHHHcC
Q psy12793        267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCR  346 (352)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (352)
                                                  +||+|+..|.+|..|||++..++...+..++|+|++     ...+..+.+.+
T Consensus        47 ----------------------------~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a-----~~~i~~i~~~g   93 (307)
T PRK00091         47 ----------------------------GTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA-----LAAIADILARG   93 (307)
T ss_pred             ----------------------------cCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH-----HHHHHHHHhCC
Confidence                                        999999999999999999999999999999999977     44556777777


Q ss_pred             cccc
Q psy12793        347 KLVV  350 (352)
Q Consensus       347 ~~~~  350 (352)
                      +++|
T Consensus        94 k~pI   97 (307)
T PRK00091         94 KLPI   97 (307)
T ss_pred             CCEE
Confidence            7754

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.32  E-value=9.7e-07  Score=79.41  Aligned_cols=88  Identities=15%  Similarity=0.118  Sum_probs=63.3

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHH
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA  267 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~  267 (352)
                      +.+++|+|||||||+|+.+.|.......|......                                             
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~---------------------------------------------   36 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRY---------------------------------------------   36 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEE---------------------------------------------
Confidence            56899999999999999999977543223222222                                             


Q ss_pred             HhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEE----EeeccChhhHHHHH
Q psy12793        268 CSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY----GKSILTHPSQRHIV  343 (352)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  343 (352)
                                                 ++|.++   ..+.+|+|++.++|..+++++.|.|+    |....+.-+.+..+
T Consensus        37 ---------------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~~~~~l   86 (186)
T PRK10078         37 ---------------------------ITRPAS---AGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIEIDLWL   86 (186)
T ss_pred             ---------------------------CCCccc---hhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHHHHHHH
Confidence                                       666544   34778999999999999999999864    33333444577788


Q ss_pred             HcCcccc
Q psy12793        344 SCRKLVV  350 (352)
Q Consensus       344 ~~~~~~~  350 (352)
                      +.++.||
T Consensus        87 ~~g~~VI   93 (186)
T PRK10078         87 HAGFDVL   93 (186)
T ss_pred             hCCCEEE
Confidence            8887654

>KOG4348|consensus

Probab=98.30  E-value=2.2e-07  Score=93.79  Aligned_cols=141  Identities=18%  Similarity=0.391  Sum_probs=88.0

Q ss_pred             eccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhhhccccccccccccccc
Q psy12793         70 AQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSI  149 (352)
Q Consensus        70 AlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a~~~~~~~~~~~~~~~~  149 (352)
                      .-|||++..|+       +|+.+.|+|+.=+.+.+++||.+..   +|+.|++|-+++.+-...++--.       .-..
T Consensus         6 ve~dy~a~hdd-------elti~vgeii~nvkk~e~gw~egel---ngrrg~fpdnfV~eik~e~k~d~-------l~nk   68 (627)
T KOG4348|consen    6 VEYDYDAVHDD-------ELTIRVGEIIRNVKKLEEGWLEGEL---NGRRGQFPDNFVVEIKVEFKDDD-------LVNK   68 (627)
T ss_pred             eecccccccCc-------eeeEeHHHHHHhhhhhccceeecee---ccccccCCchhhhhhhhhccccc-------cccc
Confidence            35899999987       6999999999999999999998873   79999999999976443321100       0000


Q ss_pred             cccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCcccccccc---ccc
Q psy12793        150 FGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQF---ITV  226 (352)
Q Consensus       150 ~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~---~~~  226 (352)
                      ..++ ..+ .        ....-.++.-|.|.+-.           +.+--+       .+.+-..|.|.-+++   .|.
T Consensus        69 ~~r~-~l~-q--------~~s~n~l~~~q~v~rtn-----------~~~q~~-------~r~c~v~f~Y~pqndDELelk  120 (627)
T KOG4348|consen   69 LSRD-SLV-Q--------MTSRNPLTVHQQVERTN-----------PPPQPQ-------ARICVVTFAYSPQNDDELELK  120 (627)
T ss_pred             cccc-chh-h--------cccCCCccccCcccccC-----------CCCCcc-------ceeEEEEEeecCCCCceeeee
Confidence            0000 000 0        00111122333333321           111000       011122377777766   788


Q ss_pred             cceeEEEeecCCcchhhhhccCC-CCCccccCCh
Q psy12793        227 CSVMFQIISKDDHNWWQARKDNV-AGSAGLIPSP  259 (352)
Q Consensus       227 ~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~p~~  259 (352)
                      -||||.|++.-...||    +|. +|..|||||.
T Consensus       121 VGDiIeli~eVEeGWw----~G~Lngk~GmFPsN  150 (627)
T KOG4348|consen  121 VGDIIELISEVEEGWW----KGKLNGKVGMFPSN  150 (627)
T ss_pred             eccHHHhhhHhhhhhh----hceecCcccccchh
Confidence            9999999999999999    556 6888999993

>KOG3812|consensus

Probab=98.28  E-value=8.2e-07  Score=87.60  Aligned_cols=69  Identities=29%  Similarity=0.484  Sum_probs=60.8

Q ss_pred             ccceeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         61 GDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        61 gdilqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      -..+.+.|++..+|++.-|+..|.+..+++|...|.|||-.+-..+||-+|.+.+....||||++...+
T Consensus        54 ~KpVAFAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPsp~rLe  122 (475)
T KOG3812|consen   54 RKPVAFAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPVRLE  122 (475)
T ss_pred             cCCceEEEEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccchHHHH
Confidence            344557899999999999999999999999999999999999999999999887777899999986543

>PRK08356 hypothetical protein; Provisional

Probab=98.17  E-value=8.5e-07  Score=80.46  Aligned_cols=40  Identities=10%  Similarity=0.140  Sum_probs=36.1

Q ss_pred             cCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc
Q psy12793        295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL  334 (352)
Q Consensus       295 t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (352)
                      ++|-++..+.+|.+|+|++..++...+..+.|+|||+...
T Consensus        36 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~   75 (195)
T PRK08356         36 SDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLK   75 (195)
T ss_pred             CCcccccccccccccccccHHHHhhccccccHHHHHHHHH
Confidence            7888888999999999999999999999999999887654

>KOG0162|consensus

Probab=97.85  E-value=1.3e-05  Score=85.54  Aligned_cols=59  Identities=29%  Similarity=0.628  Sum_probs=50.2

Q ss_pred             ccceeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         61 GDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        61 gdilqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +..+.-.+.|+|||.+++.+       +|+|++|||++|+..+-.+||+++   .+++.|++|-+|+.+
T Consensus      1047 ~~~k~p~~~A~Y~y~gq~~d-------Els~~~~diIei~~edpSGWw~gk---~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1047 KPPKNPVCEALYDYPGQDVD-------ELSFKKGDIIEIMREDPSGWWLGK---LNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             CCCCCcceeeeccCCCCCcc-------cccccCCCEEEEeccCCCcchhhc---cCCcccccccccccc
Confidence            34444578999999999644       799999999999999999999998   368999999999864

>KOG2856|consensus

Probab=97.75  E-value=9.8e-06  Score=80.68  Aligned_cols=55  Identities=29%  Similarity=0.616  Sum_probs=46.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCC-ceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN-WWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~-WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +-|+|||||.+.+.+       +|+|+.||.|..+..+|+. |-++|.  ..|++||.|.+||+.
T Consensus       415 v~vraLYDY~gqE~D-------ElsfkaGd~l~kl~eeDeqGWC~Grl--~~G~vGLyPAnYVe~  470 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGD-------ELSFKAGDELEKLEEEDEQGWCKGRL--DSGRVGLYPANYVEC  470 (472)
T ss_pred             eeEEeeeccCccccc-------chhhccccHhhhcCCccccccccccc--cCCcccccchhhhhc
Confidence            678999999999866       6999999999999988764 557763  269999999999974

>KOG3875|consensus

Probab=97.75  E-value=6.2e-06  Score=80.54  Aligned_cols=89  Identities=25%  Similarity=0.344  Sum_probs=62.1

Q ss_pred             ceeeecccCCCCCCCCCccc----ccC-cccccccceeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC---
Q psy12793         33 IFVRAQFNYNPLDDDLIPCA----QAG-IAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD---  104 (352)
Q Consensus        33 ~fvra~fdy~p~~d~~IP~~----e~g-l~fk~gdilqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D---  104 (352)
                      .|.-+.|...+++-+++..-    ++. ....++.--+++.||+|||.+++.       .+|+|++||+|+|..++|   
T Consensus       231 ~Fi~~i~G~PYLI~klls~~s~~~q~~q~n~a~~~dp~~~arA~YdF~a~np-------~ElSlk~Gdml~ia~K~dq~~  303 (362)
T KOG3875|consen  231 AFILVIFGGPYLIIKLLSQYSKEAQESQRNWAKGIDPHEFARALYDFVARNP-------VELSLKKGDMLAIASKEDQQG  303 (362)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHHHHHHhhCcCcCCChHHHHHHHhhhhcCCH-------HHhhhhcCchhhcccccccCC
Confidence            45545577777665554431    111 222223222368899999999874       379999999999999875   


Q ss_pred             --CCceEEEEcCCCCceeeecCChhHH
Q psy12793        105 --HNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus       105 --~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                        .+||+.+.. +.+..|+||.+|+.-
T Consensus       304 ~~~~gW~lat~-dg~~tG~iP~NYvkI  329 (362)
T KOG3875|consen  304 VRCEGWLLATR-DGGTTGLIPINYVKI  329 (362)
T ss_pred             CCCcceeeeec-cCCeeeeeehhhhhh
Confidence              469998875 367899999999863

>KOG0515|consensus

Probab=97.61  E-value=2.5e-05  Score=81.02  Aligned_cols=52  Identities=37%  Similarity=0.748  Sum_probs=44.5

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC---CCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD---HNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D---~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      ++=|||||.+..++       +|+|..||-|.|+.++|   .+||.|+   .+++.|+||.+|+.
T Consensus       685 ~vYAlwdYeaqf~D-------ELsf~eGd~lTvirr~d~~eteWWwa~---lng~eGyVPRnylg  739 (752)
T KOG0515|consen  685 VVYALWDYEAQFED-------ELSFDEGDELTVIRRDDEVETEWWWAR---LNGEEGYVPRNYLG  739 (752)
T ss_pred             eeEEeecccccccc-------cccccCCceeEEEecCCcchhhhhhHh---hcCcccccchhhhh
Confidence            45699999998876       69999999999998865   4799998   36889999999975

>KOG3601|consensus

Probab=97.52  E-value=5e-05  Score=70.79  Aligned_cols=48  Identities=31%  Similarity=0.603  Sum_probs=37.2

Q ss_pred             eccccCCCCCCCCcCcCcccccccCceEEEeeccC-CCceEEEEcCCCCceeeecCChh
Q psy12793         70 AQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPSPEL  127 (352)
Q Consensus        70 AlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D-~~WWqaR~~~~~g~~GlIPS~~v  127 (352)
                      +++|+....++       +|+|.+||+|.+++..| -+|..+..   .+..|+||+|+.
T Consensus         5 a~n~f~a~i~d-------ELsFlkg~~lk~l~~~d~~nw~~ael---~g~~g~~P~Nai   53 (222)
T KOG3601|consen    5 AKNDFLAGIRD-------ELSFLKGDNLKILNMEDDINWYKAEL---DGPEGFIPKNAI   53 (222)
T ss_pred             hhhhhhhcCcc-------cceeecCCceEecchHHhhhhhhHhh---cCccccCccccc
Confidence            45666655544       69999999999999865 47776653   678999999987

>KOG2996|consensus

Probab=97.48  E-value=6.1e-05  Score=78.82  Aligned_cols=52  Identities=27%  Similarity=0.610  Sum_probs=40.9

Q ss_pred             eeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         69 RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        69 RAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      .|.||+.+++-       .+|+|++|||+.|.++.  |.+||.+..   +|++|++|++|+++.
T Consensus       809 varYdf~ard~-------~eLSlk~GDvV~i~~k~g~d~GWWkGev---ngrvGwFPstYVee~  862 (865)
T KOG2996|consen  809 VARYDFCARDM-------RELSLKEGDVVKIYDKVGEDQGWWKGEV---NGRVGWFPSTYVEED  862 (865)
T ss_pred             eeccccCCCch-------hhcccccCCEEEEehhccccCceeccee---cCccccccccccccc
Confidence            34555555543       26999999999999974  679998763   789999999999863

>KOG3655|consensus

Probab=97.47  E-value=4.6e-05  Score=77.98  Aligned_cols=52  Identities=31%  Similarity=0.717  Sum_probs=46.8

Q ss_pred             eeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+|+|||++.+|.       +++|..+|++.+|+..|++||+++  +..|..||+|.||+.
T Consensus       430 A~A~~dyqAAddt-------Eisf~p~d~it~Id~vdegww~g~--~pdG~~glfPaNyV~  481 (484)
T KOG3655|consen  430 ARALYDYQAADDT-------EISFDPPDAITLIDQVDEGWWTGQ--GPDGEVGLFPANYVE  481 (484)
T ss_pred             ccccccccccCCc-------ccccCCccccccccccCCcccccc--CCCCCcCcccccccc
Confidence            4789999999875       699999999999999999999987  467899999999985

>KOG3601|consensus

Probab=97.43  E-value=7e-05  Score=69.86  Aligned_cols=54  Identities=24%  Similarity=0.621  Sum_probs=47.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .|.+|+||+++..++       +|.|++||+++|++..+..||.++.   .|++|++|..|+..
T Consensus       164 ~yqQa~~df~~~pp~-------ql~f~~gq~~~v~~~ss~~ww~Gs~---lg~agiFpagyv~p  217 (222)
T KOG3601|consen  164 YYQQALYDFQPQPPG-------QLAFRRGQQIQVLDSSSPFWWFGSK---LGRAGIFPAGYVAP  217 (222)
T ss_pred             hhhhhcCCCCCCCch-------hhccccCCcceeecCCCcchhhccc---cCceeeecCccccc
Confidence            588999999988765       6999999999999999999998884   57899999998753

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.41  E-value=0.00023  Score=69.54  Aligned_cols=51  Identities=18%  Similarity=0.182  Sum_probs=34.1

Q ss_pred             cCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccChhhHHHHHHcCcccc
Q psy12793        295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCRKLVV  350 (352)
Q Consensus       295 t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (352)
                      +|++|+..|.+|..|||++.-+.......++|.+     ........+.+.|+++|
T Consensus        42 gTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~-----~a~~~i~~~~~~g~~pi   92 (287)
T TIGR00174        42 GTAKPSLQEREGIPHHLIDILDPSESYSAADFQT-----LALNAIADITARGKIPL   92 (287)
T ss_pred             cCCCCCHHHHcCccEEEEEEechhheEcHHHHHH-----HHHHHHHHHHhCCCCEE
Confidence            8999999999999999999544443332233221     13345567778887654

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>KOG3632|consensus

Probab=97.39  E-value=0.00012  Score=80.28  Aligned_cols=63  Identities=27%  Similarity=0.494  Sum_probs=48.2

Q ss_pred             eeeeeccccCCCCCCCCcCcC-cccccccCceEEEeeccCCCce-EEEEcCCCCceeeecCChhHHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQ-AGIAFQIGDILQIISKDDHNWW-QARKDNVAGSAGLIPSPELQEWR  131 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e-~~LsF~kGDIL~Vl~~~D~~WW-qaR~~~~~g~~GlIPS~~v~e~r  131 (352)
                      .++.|||||||..-+.+|.-+ .+|+|++|+||.|+...|.+-+ ++.   .+++.|+||+|.+++..
T Consensus      1139 rifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE---~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1139 RIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGE---LNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred             eeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecc---ccccccccccccccccc
Confidence            456799999997765555433 5899999999999987765543 332   27899999999998743

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=97.31  E-value=8.2e-05  Score=53.09  Aligned_cols=43  Identities=23%  Similarity=0.625  Sum_probs=34.4

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.||.+.+.+||.++.... +..|+||+
T Consensus         3 lydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~-~~~G~vP~   48 (48)
T PF00018_consen    3 LYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNEST-GKEGWVPS   48 (48)
T ss_dssp             SSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTT-TEEEEEEG
T ss_pred             CeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCC-CcEEEeeC
Confidence            466665544   89999999999999999998887655 78899985

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG0197|consensus

Probab=97.17  E-value=9.3e-05  Score=76.39  Aligned_cols=58  Identities=29%  Similarity=0.648  Sum_probs=49.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCce-EEEeeccCCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDI-LQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  131 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDI-L~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r  131 (352)
                      ..+.|+|||.+..+.       +|+|.+||+ +++++..+..||.||... .+..|+||+||+.+.+
T Consensus        12 ~~~valyd~~s~~~~-------dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~-~~~~g~ip~N~v~~~~   70 (468)
T KOG0197|consen   12 TIVVALYDYASRTPE-------DLSFRKGDVVLILLETTNGDWWRARSLQ-LGQEGYIPSNYVARNR   70 (468)
T ss_pred             ceEEEeccccCCCcc-------ccccccCceEEEeeccCChhHHHHHHhh-cCCCCcCcCceeeccc
Confidence            357899999998854       699999999 999999999999998643 6889999999998753

>KOG1264|consensus

Probab=97.14  E-value=0.00023  Score=77.04  Aligned_cols=59  Identities=27%  Similarity=0.561  Sum_probs=50.4

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHh
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  132 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~  132 (352)
                      ++-++|||||.+..++       +|+|-+|-||+.+.++...||.++..  ..-.+++||+|+++-..
T Consensus       774 ~vt~kAL~~Yka~r~D-------ELSFpk~aiItnv~keeg~wWrGdYG--g~iq~wfPsnyVeei~~  832 (1267)
T KOG1264|consen  774 QVTVKALYDYKAKRSD-------ELSFPKGAIITNVSKEEGGWWRGDYG--GRIQQWFPSNYVEEIST  832 (1267)
T ss_pred             chhhhhhhccccCCcc-------cccccccceeEeeeccCCceeecccc--cceeeeccHHHhhhhcc
Confidence            5789999999998876       69999999999999999999988742  23579999999997554

>KOG4225|consensus

Probab=97.07  E-value=0.00037  Score=70.98  Aligned_cols=54  Identities=26%  Similarity=0.601  Sum_probs=46.1

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      -++|||.|.|++++       +|.|+.|||+.|+.+=|++|+-+... ..|..|.+|-|||+
T Consensus       434 ~yrAly~Y~pqned-------eLEl~egDii~VmeKcddgWfvGts~-rtg~fGtFPgnyV~  487 (489)
T KOG4225|consen  434 KYRALYSYRPQNED-------ELELREGDIIDVMEKCDDGWFVGTSR-RTGKFGTFPGNYVK  487 (489)
T ss_pred             cceeccccCCCCch-------hheeccCCEEeeeecccCcceeccce-ecccccccCccccc
Confidence            37999999999876       69999999999999999999876211 26889999999986

>KOG2546|consensus

Probab=97.06  E-value=0.00045  Score=70.16  Aligned_cols=53  Identities=30%  Similarity=0.642  Sum_probs=46.6

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      -|.++|||.+..|+       +|+|..|-||.|+.+.|++||.+-.   ++-.||||-||++.
T Consensus       425 kVv~iydy~~~Kdd-------eLsf~E~ailyv~kknddgw~EgV~---~~VTglFpgnyve~  477 (483)
T KOG2546|consen  425 KVVAIYDYTADKDD-------ELSFAEGAILYVLKKNDDGWYEGVQ---DGVTGLFPGNYVEP  477 (483)
T ss_pred             HHHhhccccccccc-------ccccccccEEEEEEecCCcchhhee---cCcceeccCccccc
Confidence            46799999999877       6999999999999999999997763   56799999999875

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=96.77  E-value=0.00049  Score=49.72  Aligned_cols=40  Identities=28%  Similarity=0.661  Sum_probs=32.4

Q ss_pred             cccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        216 YAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       216 F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      |.|.+...   +|.+|++|.|+.+.+.+||.++.   .|..|+||+
T Consensus         3 ~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~   45 (49)
T PF14604_consen    3 YDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRN---TGRTGLFPA   45 (49)
T ss_dssp             SCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEE---TTEEEEEEG
T ss_pred             ccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEE---CCEEEEECH
Confidence            45554443   89999999999999999999875   678899997

...

>KOG1843|consensus

Probab=96.73  E-value=0.00071  Score=68.49  Aligned_cols=58  Identities=29%  Similarity=0.666  Sum_probs=47.4

Q ss_pred             ccceee-eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC--CCceEEEEcCCCCceeeecCChhH
Q psy12793         61 GDILQI-FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD--HNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        61 gdilqi-~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D--~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      |.-++. .+.|+|++..+..+       +|+|++||||.|+++.|  ..||.++.   ++..|++|-||+.
T Consensus       411 ~~Sl~~n~a~a~ysfage~~G-------Dl~f~kgDii~il~ks~s~~dwwtgr~---~~~egifPanyv~  471 (473)
T KOG1843|consen  411 GCSLEPNIATALYSFAGEQPG-------DLSFQKGDIITILKKSDSANDWWTGRG---NGYEGIFPANYVS  471 (473)
T ss_pred             ccccCcceeeeeehhccCCCC-------CcccccCceEEEecCCcchhhHHHhhc---cccccccccceec
Confidence            333443 57899999998765       69999999999999875  57999984   6889999999974

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=96.72  E-value=0.00029  Score=51.60  Aligned_cols=36  Identities=25%  Similarity=0.600  Sum_probs=30.1

Q ss_pred             ccccceeEEEe-ecCCcchhhhhccCCCCCccccCChhHH
Q psy12793        224 ITVCSVMFQII-SKDDHNWWQARKDNVAGSAGLIPSPELQ  262 (352)
Q Consensus       224 ~~~~~~~~~vl-~k~~~~w~~~~~~~~~~~~g~~p~~~~~  262 (352)
                      +|.+|++|.|+ .+++.+||.++.   .|..|+||+.-++
T Consensus        17 s~~~Gd~i~v~~~~~~~~ww~~~~---~g~~G~~P~~~v~   53 (55)
T PF07653_consen   17 SFKKGDVIEVLGEKDDDGWWLGEN---NGRRGWFPSSYVE   53 (55)
T ss_dssp             EB-TTEEEEEEEEECSTSEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEecCCEEEEEEeecCCCEEEEEE---CCcEEEEcHHHEE
Confidence            89999999999 999999998877   5667999986543

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG2199|consensus

Probab=96.72  E-value=0.00074  Score=68.18  Aligned_cols=48  Identities=21%  Similarity=0.475  Sum_probs=38.7

Q ss_pred             hCCCCcccccccc---ccccceeEEEeecCCcchhhhhccCC-CCCccccCChhHHH
Q psy12793        211 KFPDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNV-AGSAGLIPSPELQE  263 (352)
Q Consensus       211 ~~p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~p~~~~~~  263 (352)
                      ++..+|+|.+.-+   +|-+|+||.||+..|++||    +|+ .++-||||+ .|.+
T Consensus       217 kVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WW----KG~~~~~~GlFPs-nfVT  268 (462)
T KOG2199|consen  217 KVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWW----KGENHRGIGLFPS-NFVT  268 (462)
T ss_pred             hhhhhhcccccCCCccceecCcEEEEcccCCcchh----ccccCCcccccch-hhhh
Confidence            3445677776544   9999999999999999999    778 788999999 4443

>KOG2996|consensus

Probab=96.66  E-value=0.0022  Score=67.61  Aligned_cols=40  Identities=28%  Similarity=0.775  Sum_probs=32.5

Q ss_pred             ccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhH
Q psy12793         88 GIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        88 ~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      -|.|+.|||+..+..+ ...||++|..+ .+..|.+||..+.
T Consensus       626 ~l~~~~gdvlel~~~d~~s~~w~gr~~~-sr~sg~fpss~vk  666 (865)
T KOG2996|consen  626 RLVLQEGDVLELLKGDAESSWWEGRNHG-SRESGNFPSSTVK  666 (865)
T ss_pred             ceEecCCceeehhcCCCCCcccccCCcc-CCccCCCCccccC
Confidence            3899999999999876 46899999654 5678999997664

>PLN02840 tRNA dimethylallyltransferase

Probab=96.50  E-value=0.0014  Score=67.27  Aligned_cols=95  Identities=13%  Similarity=0.228  Sum_probs=61.7

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  266 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~  266 (352)
                      ...+|+|+||+||||+++...|++.....+   ++.+++..-.-+.|                                 
T Consensus        20 ~~~vi~I~GptgsGKTtla~~La~~~~~~i---is~Ds~qvYr~~~I---------------------------------   63 (421)
T PLN02840         20 KEKVIVISGPTGAGKSRLALELAKRLNGEI---ISADSVQVYRGLDV---------------------------------   63 (421)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHCCCCe---EeccccceecceeE---------------------------------
Confidence            345799999999999999999998865322   22211111111112                                 


Q ss_pred             HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccChhhHHHHHHcC
Q psy12793        267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCR  346 (352)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (352)
                                                  +|++|...|.+|..||||+.-+.......++|.+-     ......+|.+.|
T Consensus        64 ----------------------------gTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~~-----A~~~I~~i~~rg  110 (421)
T PLN02840         64 ----------------------------GSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFDD-----ARRATQDILNRG  110 (421)
T ss_pred             ----------------------------EcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHHH-----HHHHHHHHHhcC
Confidence                                        79999999999999999876655444344444321     234556777777


Q ss_pred             cccc
Q psy12793        347 KLVV  350 (352)
Q Consensus       347 ~~~~  350 (352)
                      +++|
T Consensus       111 kiPI  114 (421)
T PLN02840        111 RVPI  114 (421)
T ss_pred             CCEE
Confidence            7654

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=96.43  E-value=0.0072  Score=55.15  Aligned_cols=30  Identities=13%  Similarity=0.468  Sum_probs=26.0

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPDK  215 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~  215 (352)
                      +++++|+|.||||+||+||...+....+..
T Consensus         3 ~~G~lI~vvGPSGAGKDtl~~~ar~~l~~~   32 (192)
T COG3709           3 FMGRLIAVVGPSGAGKDTLLDAARARLAGR   32 (192)
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHhccC
Confidence            368999999999999999999888776654

>KOG4792|consensus

Probab=96.01  E-value=0.0047  Score=58.63  Aligned_cols=57  Identities=23%  Similarity=0.541  Sum_probs=48.0

Q ss_pred             CCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhh
Q psy12793        213 PDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTI  271 (352)
Q Consensus       213 p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~  271 (352)
                      ..+|.|.-.+.   +|.+|+++.|++|.+..||.||-.  .|..||||-+-.|.+|++|...
T Consensus       128 r~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns--~Gk~GmIPvpYVe~~~~~~~~~  187 (293)
T KOG4792|consen  128 RALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNS--EGKRGMIPVPYVEKYRPASASV  187 (293)
T ss_pred             eeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhcc--CCcccceechHHHhhhhhhccc
Confidence            34677775543   999999999999999999999753  6788999999999999999443

>KOG4575|consensus

Probab=95.98  E-value=0.006  Score=64.82  Aligned_cols=54  Identities=26%  Similarity=0.545  Sum_probs=46.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChh
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL  127 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v  127 (352)
                      ..|+|+|-|.++..+       +|.|..||+++++.-.|.-||-.+..| ....|++|||++
T Consensus         9 ~~vrA~y~w~ge~eG-------dl~f~egDlie~trI~dgkwwi~lhrN-k~~~g~fpsNFv   62 (874)
T KOG4575|consen    9 CMVRALYAWPGEREG-------DLKFTEGDLIEQTRIEDGKWWILLHRN-KDEDGLFPSNFV   62 (874)
T ss_pred             ceEEeeccCCCCccc-------ccceecccceeEEeeccceeeeeeeec-ccccccCcccce
Confidence            578999999888754       699999999999999998888777655 456799999998

>KOG3557|consensus

Probab=95.87  E-value=0.0021  Score=68.24  Aligned_cols=56  Identities=21%  Similarity=0.631  Sum_probs=46.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  131 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r  131 (352)
                      .++..+||+.++...       +|+..+||+|+|++. ..+||.++  +..|++|+||++.+...+
T Consensus       501 k~~~~~Ydf~arNs~-------ELsV~k~E~LEvl~d-~R~WW~~k--n~~G~~GyvP~nIL~~~~  556 (721)
T KOG3557|consen  501 KWVLVLYDFQARNSS-------ELSVKKGEVLEVLDD-GRKWWKVK--NGHGRAGYVPSNILAPLQ  556 (721)
T ss_pred             eeeeeehhhhcccch-------hhhhhhhhhhhhhhc-cccceecc--CccCCCCCcchhhhccCC
Confidence            467789999998764       699999999999974 45899998  568999999999887543

>KOG1702|consensus

Probab=95.65  E-value=0.014  Score=54.64  Aligned_cols=54  Identities=24%  Similarity=0.492  Sum_probs=43.5

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      -.||.|||.+.+.+       +++|+-||-|.-+...|++|.-+.. ..+|..|++|.||++
T Consensus       209 tyra~ydysaqded-------evsF~dgd~ivnvq~iddGWmygtv-~rtg~tGmlpaNyie  262 (264)
T KOG1702|consen  209 TYRAFYDYSAQDED-------EVSFVDGDYIVNVQSIDDGWMYGTV-VRTGWTGMLPANYIE  262 (264)
T ss_pred             cchhhccCcccCcc-------eeEEecCCeEEEEEeccCCceeeEE-EeccccCCCchhhee
Confidence            35899999998765       6999999999888888888854332 237899999999975

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=95.53  E-value=0.0098  Score=54.09  Aligned_cols=22  Identities=27%  Similarity=0.652  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      -|+|+|||||||+|+.++|.+.
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999987

>PRK00098 GTPase RsgA; Reviewed

Probab=95.29  E-value=0.02  Score=55.73  Aligned_cols=27  Identities=33%  Similarity=0.508  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .++.++|+|+|||||+||.+.|+....
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~  189 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLE  189 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcC
Confidence            467899999999999999999986543

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=95.27  E-value=0.02  Score=50.83  Aligned_cols=29  Identities=17%  Similarity=0.445  Sum_probs=25.2

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCCc
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDKY  216 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F  216 (352)
                      +++|+|.|++||||+|+.+.|....+..|
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~   30 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPW   30 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCc
Confidence            57899999999999999999998866533

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=95.15  E-value=0.02  Score=47.00  Aligned_cols=23  Identities=17%  Similarity=0.562  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|.|++||||+|+.+.|++..
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            47889999999999999999864

...

>smart00326 SH3 Src homology 3 domains

Probab=94.69  E-value=0.017  Score=40.59  Aligned_cols=34  Identities=29%  Similarity=0.671  Sum_probs=30.0

Q ss_pred             ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        224 ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       224 ~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.+|+.|.|+.+.+..||.++...  +..|+||+.
T Consensus        20 ~~~~Gd~v~v~~~~~~~w~~~~~~~--~~~G~vP~~   53 (58)
T smart00326       20 SFKKGDIITVLEKSDDGWWKGRLGR--GKEGLFPSN   53 (58)
T ss_pred             CCCCCCEEEEEEcCCCCeEEEEeCC--CCEEEEchH
Confidence            7889999999999999999887765  778999974

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=94.36  E-value=0.044  Score=46.08  Aligned_cols=24  Identities=21%  Similarity=0.520  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +|+|+||+||||+|+.+.|.....
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC
Confidence            578999999999999999987655

...

>KOG3771|consensus

Probab=94.12  E-value=0.032  Score=57.61  Aligned_cols=43  Identities=26%  Similarity=0.401  Sum_probs=35.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCC
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNV  115 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~  115 (352)
                      ..|++++||.+.+.+       +|+|+.||+|.|+..+ ..+||.+++.+.
T Consensus       401 ~~v~a~~dy~a~~~d-------eLsf~~gd~i~vi~s~~~~e~~eg~~mg~  444 (460)
T KOG3771|consen  401 YKVKALHDYAAQDTD-------ELSFEAGDVILVIPSDNPEEQDEGWLMGV  444 (460)
T ss_pred             cceeccccccccccc-------cccccCCCEEEEecCCCccchhhHHHhhh
Confidence            358999999998765       6999999999999875 467999987543

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=94.05  E-value=0.023  Score=39.53  Aligned_cols=35  Identities=26%  Similarity=0.507  Sum_probs=29.7

Q ss_pred             ccccceeEEEeecCCcchhhhhccCCCCCccccCChh
Q psy12793        224 ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPE  260 (352)
Q Consensus       224 ~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~  260 (352)
                      +|.+|+.|.|+...+.+||.++..+.  ..|+||+.-
T Consensus        17 ~~~~Gd~v~v~~~~~~~w~~~~~~~~--~~G~vP~~~   51 (54)
T cd00174          17 SFKKGDIIEVLEKSDDGWWEGRLLGG--KRGLFPSNY   51 (54)
T ss_pred             CCCCCCEEEEEEcCCCCeEEEEECCC--CEEEEcccc
Confidence            78899999999999999998887554  778999843

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=93.91  E-value=0.053  Score=44.23  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|.|++||||+|+.+.|.+..
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999999874

...

>PRK06762 hypothetical protein; Provisional

Probab=93.85  E-value=0.062  Score=46.85  Aligned_cols=27  Identities=19%  Similarity=0.429  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +.++|+|.|++||||+|+.+.|.+..+
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~   27 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLG   27 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            357899999999999999999988764

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=93.76  E-value=0.066  Score=48.28  Aligned_cols=25  Identities=48%  Similarity=0.727  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+.+||+|+|||||+||.+.|+..
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3489999999999999999999875

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>KOG4278|consensus

Probab=93.74  E-value=0.056  Score=58.31  Aligned_cols=54  Identities=20%  Similarity=0.488  Sum_probs=44.0

Q ss_pred             eeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793         68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQEWR  131 (352)
Q Consensus        68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~e~r  131 (352)
                      ..|||||-+..|.       .|++.+||.|+|+.-. ..+|-.||-  .+|+ |++||||....-
T Consensus        93 FVALYDFvasGdn-------tLSitKGeklRvLGYN~NgEWcEart--KNGq-GWVPSNyItPvN  147 (1157)
T KOG4278|consen   93 FVALYDFVASGDN-------TLSITKGEKLRVLGYNKNGEWCEART--KNGQ-GWVPSNYITPVN  147 (1157)
T ss_pred             eEeeeeeeccccc-------eeeeecCceEEEeeecCCCcceeecc--cCCC-cccccccccccc
Confidence            4699999988775       5999999999999875 567888883  4566 999999987543

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=93.36  E-value=0.1  Score=41.59  Aligned_cols=28  Identities=14%  Similarity=0.438  Sum_probs=23.8

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDK  215 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~  215 (352)
                      ++.++|.||+|+||+++...++......
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            4678999999999999999998876543

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK08233 hypothetical protein; Provisional

Probab=93.25  E-value=0.095  Score=45.83  Aligned_cols=26  Identities=19%  Similarity=0.413  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...|.|.|++||||+|+..+|+...+
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            35778889999999999999998765

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=93.23  E-value=0.087  Score=46.31  Aligned_cols=25  Identities=20%  Similarity=0.519  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...|+|+||+||||+|+.++|....
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4678899999999999999998753

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>KOG1118|consensus

Probab=93.22  E-value=0.043  Score=54.24  Aligned_cols=42  Identities=17%  Similarity=0.363  Sum_probs=36.1

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|-..+.   -|-.|++|.|+.+.|.+||.++++|+   +||||.
T Consensus       311 alYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g~---sG~FPv  355 (366)
T KOG1118|consen  311 ALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHGE---SGMFPV  355 (366)
T ss_pred             eeeccCCCCCCccCcccCceeeehhhcCcchhhheecCc---cCcccc
Confidence            4677777766   79999999999999999997777766   999997

>TIGR00235 udk uridine kinase

Probab=93.09  E-value=0.096  Score=47.79  Aligned_cols=29  Identities=14%  Similarity=0.266  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +..+..|.|+|||||||+|+.+.|....+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34567889999999999999999987654

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=93.00  E-value=0.098  Score=50.00  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +++|+|+|++||||+|+.++|.+.++
T Consensus         2 ~~liil~G~pGSGKSTla~~L~~~~~   27 (300)
T PHA02530          2 MKIILTVGVPGSGKSTWAREFAAKNP   27 (300)
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHCC
Confidence            47889999999999999999998875

>PRK00131 aroK shikimate kinase; Reviewed

Probab=92.97  E-value=0.13  Score=44.47  Aligned_cols=27  Identities=30%  Similarity=0.527  Sum_probs=23.6

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .++.|+|+|++||||+|+...|.+...
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~   29 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLG   29 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence            457899999999999999999988753

>KOG2222|consensus

Probab=92.79  E-value=0.059  Score=56.10  Aligned_cols=55  Identities=27%  Similarity=0.533  Sum_probs=44.7

Q ss_pred             eeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhh
Q psy12793         69 RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA  133 (352)
Q Consensus        69 RAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a  133 (352)
                      +||.||.-.+|+       +|.|++.||+.|++..|+..|-+.   .+|-.|++|.++++-..+.
T Consensus       552 kal~df~r~ddd-------elgfrkndiitiisekdehcwvge---lnglrgwfpakfvellder  606 (848)
T KOG2222|consen  552 KALHDFAREDDD-------ELGFRKNDIITIISEKDEHCWVGE---LNGLRGWFPAKFVELLDER  606 (848)
T ss_pred             HHHhhhhhcccc-------ccccccccEEEEeecCCcceeeec---cccccccchHHHHHHHHhc
Confidence            567777666654       699999999999999999999765   3788999999998855444

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=92.77  E-value=0.13  Score=48.41  Aligned_cols=37  Identities=16%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             cccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793        174 LVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       174 i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      .-+|.+...++++....++|+||||+||+++.+.+.-
T Consensus        11 f~~~~~~~~~~~~~~~~~~IvG~NGsGKStll~Ai~~   47 (251)
T cd03273          11 FKSYATRTVISGFDPQFNAITGLNGSGKSNILDAICF   47 (251)
T ss_pred             ccccCcCEeeccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3456666555566678899999999999999998854

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK08118 topology modulation protein; Reviewed

Probab=92.74  E-value=0.11  Score=46.27  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +-|+|+||+||||+|+.++|.+.
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            34788999999999999999876

>PRK14527 adenylate kinase; Provisional

Probab=92.35  E-value=0.16  Score=45.71  Aligned_cols=26  Identities=27%  Similarity=0.560  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+..|+|+||+||||+|+...|.+.+
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998764

>PRK14531 adenylate kinase; Provisional

Probab=92.33  E-value=0.14  Score=45.95  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ++-|+|+||+||||+|+..+|.+.+
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4568899999999999999998864

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=92.11  E-value=0.15  Score=41.32  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=19.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      |+|+|++||||+++.++|+....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~   24 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEF   24 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS-
T ss_pred             EEEECcCCCCHHHHHHHHhcCCC
Confidence            67899999999999999998643

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=92.05  E-value=0.13  Score=45.39  Aligned_cols=24  Identities=21%  Similarity=0.493  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .|+|+||+||||+|+..+|++...
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~   24 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFG   24 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            378899999999999999988653

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK03839 putative kinase; Provisional

Probab=91.99  E-value=0.16  Score=44.94  Aligned_cols=23  Identities=26%  Similarity=0.590  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|+|++||||+|+.++|.+..
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998874

>PRK14530 adenylate kinase; Provisional

Probab=91.99  E-value=0.17  Score=46.44  Aligned_cols=26  Identities=31%  Similarity=0.593  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ++.|+|+||+||||+|+.++|++...
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~   28 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFG   28 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999987653

>PRK06217 hypothetical protein; Validated

Probab=91.88  E-value=0.17  Score=45.31  Aligned_cols=24  Identities=21%  Similarity=0.443  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..|+|+|++||||+|+.++|.+..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l   25 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERL   25 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            358999999999999999999864

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=91.86  E-value=0.17  Score=41.36  Aligned_cols=22  Identities=23%  Similarity=0.531  Sum_probs=20.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|.||+|+||+++.+.+++..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l   22 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYL   22 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHT
T ss_pred             CEEECcCCCCeeHHHHHHHhhc
Confidence            6789999999999999999874

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=91.82  E-value=0.2  Score=40.51  Aligned_cols=26  Identities=27%  Similarity=0.584  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+.++|.||+|+||+++.+.+....
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998864

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=91.72  E-value=0.14  Score=44.43  Aligned_cols=23  Identities=30%  Similarity=0.654  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      |+|+||+||||+|+...|.....
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            57899999999999999988754

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK06761 hypothetical protein; Provisional

Probab=91.66  E-value=0.33  Score=47.52  Aligned_cols=27  Identities=19%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      .++|+|.|++||||+|+.+.|.+....
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~   29 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQ   29 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCc
Confidence            468999999999999999999987543

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=91.66  E-value=0.18  Score=38.40  Aligned_cols=23  Identities=17%  Similarity=0.527  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|.|++|+||+|+.+.|....
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            36889999999999999998875

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PLN02200 adenylate kinase family protein

Probab=91.65  E-value=0.2  Score=47.36  Aligned_cols=39  Identities=21%  Similarity=0.302  Sum_probs=26.8

Q ss_pred             cccceeeEeccC-CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        174 LVTYEEVVKLPS-FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       174 i~sYEeV~~~p~-~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +.+.|++-.-+. .....|+|+||+||||+|+..+|++..
T Consensus        28 ~~~~~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~   67 (234)
T PLN02200         28 IITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVETF   67 (234)
T ss_pred             ccccccccCCccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            444444432222 223578889999999999999998764

>PRK05541 adenylylsulfate kinase; Provisional

Probab=91.47  E-value=0.23  Score=43.84  Aligned_cols=28  Identities=18%  Similarity=0.334  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..|+|.|++||||+|+.+.|.....
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3456899999999999999999887643

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=91.45  E-value=0.22  Score=38.08  Aligned_cols=22  Identities=14%  Similarity=0.454  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCChhHHHHHHHh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ...+|+|++||||+||.+.+.-
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~   45 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQT   45 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4788999999999999998754

>PRK07261 topology modulation protein; Provisional

Probab=91.43  E-value=0.17  Score=45.18  Aligned_cols=22  Identities=18%  Similarity=0.508  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      -|+|+|++||||+|+.+.|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3788999999999999998765

>PRK14532 adenylate kinase; Provisional

Probab=91.35  E-value=0.18  Score=44.89  Aligned_cols=24  Identities=21%  Similarity=0.427  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .|+|+||+||||+|+..+|++.+.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g   25 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERG   25 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            488999999999999999988654

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=91.34  E-value=0.17  Score=43.24  Aligned_cols=22  Identities=23%  Similarity=0.626  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +|+|.|++||||+|+.+.|...
T Consensus         1 li~l~G~~GsGKST~a~~l~~~   22 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAER   22 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhh
Confidence            4788999999999999999876

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PRK00698 tmk thymidylate kinase; Validated

Probab=91.28  E-value=0.21  Score=44.59  Aligned_cols=25  Identities=16%  Similarity=0.244  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +++|||.|+.||||+|+.++|.+..
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l   27 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELL   27 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHH
Confidence            5789999999999999999998753

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=91.21  E-value=0.21  Score=43.85  Aligned_cols=24  Identities=21%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+|+|.|+.||||+|+.++|.+..
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l   24 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERL   24 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            368999999999999999998764

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PF05729 NACHT: NACHT domain

Probab=91.20  E-value=0.22  Score=42.22  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+++|.|+.|+||+++..+++..
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHH
Confidence            68999999999999999988764

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=91.18  E-value=0.19  Score=47.85  Aligned_cols=26  Identities=23%  Similarity=0.418  Sum_probs=21.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ...+..++|+|||||||+|+.+-+-.
T Consensus        25 v~~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          25 VEKGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence            35688999999999999998876643

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=91.04  E-value=0.062  Score=52.95  Aligned_cols=24  Identities=21%  Similarity=0.390  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++|+|+||+||||+.|.-.|++.
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~   27 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKG   27 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHh
Confidence            358999999999999999999887

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=91.03  E-value=0.23  Score=46.03  Aligned_cols=25  Identities=24%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHH
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      ...+..++|+||||+||+|+.+.+.
T Consensus        20 ~~~~~~~~i~GpNGsGKStll~ai~   44 (243)
T cd03272          20 PFSPKHNVVVGRNGSGKSNFFAAIR   44 (243)
T ss_pred             cCCCCcEEEECCCCCCHHHHHHHHH
Confidence            3345688999999999999999886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=90.78  E-value=0.24  Score=45.05  Aligned_cols=28  Identities=21%  Similarity=0.521  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDK  215 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~  215 (352)
                      +++|+|-|+|.|||+||.+.|....+..
T Consensus         1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p   28 (174)
T PF07931_consen    1 GQIIILNGPSSSGKSSIARALQERLPEP   28 (174)
T ss_dssp             --EEEEEE-TTSSHHHHHHHHHHHSSS-
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHhCcCC
Confidence            4789999999999999999999987775

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=90.76  E-value=0.32  Score=43.49  Aligned_cols=25  Identities=24%  Similarity=0.618  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+.|+|+|++|+||+|+...|....
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l   28 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQL   28 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHc
Confidence            4679999999999999999998764

>PRK13947 shikimate kinase; Provisional

Probab=90.75  E-value=0.29  Score=42.71  Aligned_cols=25  Identities=24%  Similarity=0.557  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..|+|+|++||||+|+..+|.+...
T Consensus         2 ~~I~l~G~~GsGKst~a~~La~~lg   26 (171)
T PRK13947          2 KNIVLIGFMGTGKTTVGKRVATTLS   26 (171)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999988753

>PRK13975 thymidylate kinase; Provisional

Probab=90.71  E-value=0.26  Score=43.93  Aligned_cols=27  Identities=26%  Similarity=0.404  Sum_probs=23.8

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ++.|+|.|+.||||+|+.+.|.+....
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~   28 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNA   28 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            468999999999999999999987653

>PRK06547 hypothetical protein; Provisional

Probab=90.67  E-value=0.28  Score=44.18  Aligned_cols=27  Identities=19%  Similarity=0.303  Sum_probs=22.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ......|+|.|++||||+|+.+.|.+.
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~   38 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAAR   38 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            344566777799999999999999886

>PLN02165 adenylate isopentenyltransferase

Probab=90.59  E-value=0.31  Score=48.90  Aligned_cols=29  Identities=34%  Similarity=0.721  Sum_probs=24.8

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+.+|+|+||+||||+++...|.....
T Consensus        40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~   68 (334)
T PLN02165         40 NCKDKVVVIMGATGSGKSRLSVDLATRFP   68 (334)
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence            34567899999999999999999988754

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=90.56  E-value=0.24  Score=43.85  Aligned_cols=22  Identities=32%  Similarity=0.647  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+||+||||+|+...|.+..
T Consensus         2 I~i~G~pGsGKst~a~~La~~~   23 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY   23 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999998864

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=90.56  E-value=0.24  Score=40.84  Aligned_cols=26  Identities=23%  Similarity=0.517  Sum_probs=19.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+.++|.|++|+||+++.++++...
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999998864

>TIGR01351 adk adenylate kinases

Probab=90.55  E-value=0.23  Score=45.37  Aligned_cols=22  Identities=36%  Similarity=0.671  Sum_probs=19.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+||+||||+|+..+|.+.+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7889999999999999998764

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=90.49  E-value=0.26  Score=41.55  Aligned_cols=25  Identities=20%  Similarity=0.457  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      +|+|.||+|+||+++.+.++.....
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~   25 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGR   25 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhc
Confidence            5899999999999999999886543

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>KOG2070|consensus

Probab=90.45  E-value=0.15  Score=53.35  Aligned_cols=41  Identities=17%  Similarity=0.483  Sum_probs=34.4

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCC-CCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNV-AGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~p~~  259 (352)
                      +|.|.-++.   +|.|||+|.|.-..+-.||    +|- +|.+|.||+-
T Consensus        23 kf~F~gsNnDELsf~KgDvItVTq~eeGGWW----EGTlng~TGWFPsn   67 (661)
T KOG2070|consen   23 KFNFQGSNNDELSFSKGDVITVTQVEEGGWW----EGTLNGRTGWFPSN   67 (661)
T ss_pred             EeecccCCCceeccccCCEEEEEEeccCcce----eccccCccCccchH
Confidence            466664444   9999999999999999999    566 8999999993

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=90.33  E-value=0.19  Score=41.95  Aligned_cols=28  Identities=18%  Similarity=0.452  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..++|+|++|+||+|+.+.|....+
T Consensus         9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~   36 (137)
T PF00005_consen    9 KPGEIVAIVGPNGSGKSTLLKALAGLLP   36 (137)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred             cCCCEEEEEccCCCccccceeeeccccc
Confidence            3578999999999999999998876553

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PRK05480 uridine/cytidine kinase; Provisional

Probab=90.30  E-value=0.31  Score=44.27  Aligned_cols=26  Identities=19%  Similarity=0.441  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ....|.|.|+|||||+|+.+.|....
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34577889999999999999998865

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=90.28  E-value=0.27  Score=41.70  Aligned_cols=24  Identities=25%  Similarity=0.537  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .|+|+|++|+||+|+...|.+...
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~   24 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALG   24 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhC
Confidence            378999999999999999987653

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=90.21  E-value=0.3  Score=43.47  Aligned_cols=26  Identities=23%  Similarity=0.333  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +.+|||.|+.||||+|+.++|.+...
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~   28 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQ   28 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999987643

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>cd04155 Arl3 Arl3 subfamily

Probab=90.20  E-value=0.5  Score=40.64  Aligned_cols=25  Identities=20%  Similarity=0.396  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..-|+|+|++||||+++.+++....
T Consensus        14 ~~~v~i~G~~g~GKStLl~~l~~~~   38 (173)
T cd04155          14 EPRILILGLDNAGKTTILKQLASED   38 (173)
T ss_pred             ccEEEEEccCCCCHHHHHHHHhcCC
Confidence            3458899999999999999998753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=90.19  E-value=0.56  Score=42.24  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +|.|.|++||||+|+.+.|....
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l   23 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQL   23 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999998764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=90.11  E-value=0.3  Score=41.20  Aligned_cols=24  Identities=21%  Similarity=0.578  Sum_probs=20.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHH
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      ..+..++|.||||+||+|+...+.
T Consensus        13 ~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          13 YGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             cCCEEEEEEcCCCCCHHHHHHHhh
Confidence            356889999999999999998875

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=89.89  E-value=0.29  Score=49.17  Aligned_cols=140  Identities=15%  Similarity=0.166  Sum_probs=72.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC-CCC-----------------------cccc--ccc-c---ccccceeEEEe
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF-PDK-----------------------YAYP--VPQ-F---ITVCSVMFQII  234 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~-p~~-----------------------F~~~--v~~-~---~~~~~~~~~vl  234 (352)
                      ...+-.+||+|||||||+|+-+.++--. |+-                       |..-  -|| +   -+.-+....=+
T Consensus        26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~~  105 (338)
T COG3839          26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRGV  105 (338)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCCC
Confidence            3567899999999999999998886521 110                       1100  111 0   12233333334


Q ss_pred             ecCCcchhhhhccCCCCCccccCChh-----HHHHHHHHhhhc-cccccccccccccCCccccccccCCCC-----CCCC
Q psy12793        235 SKDDHNWWQARKDNVAGSAGLIPSPE-----LQEWRTACSTID-KTKHEQGIYSSFSLPFSVYRRDTTRSP-----RSDE  303 (352)
Q Consensus       235 ~k~~~~w~~~~~~~~~~~~g~~p~~~-----~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~r~~-----~~~e  303 (352)
                      +|++-+|=+...-...+-..|+-.+-     =|+||-|.-+-. .++.    .-++.-|.|.---+....+     +..+
T Consensus       106 ~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~----v~L~DEPlSnLDa~lR~~mr~ei~~lh~  181 (338)
T COG3839         106 PKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPK----VFLLDEPLSNLDAKLRVLMRSEIKKLHE  181 (338)
T ss_pred             chHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCC----EEEecCchhHhhHHHHHHHHHHHHHHHH
Confidence            55555554443322233333332211     256666666655 3322    1233334432111111112     2233


Q ss_pred             cCCcceEEecHHHHHHHHHcCcEEE
Q psy12793        304 ENGRAYYFISHDEMMSDIAANQYLE  328 (352)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~  328 (352)
                      .-|...-|||||.+|.+.-+.+..-
T Consensus       182 ~l~~T~IYVTHDq~EAmtladri~V  206 (338)
T COG3839         182 RLGTTTIYVTHDQVEAMTLADRIVV  206 (338)
T ss_pred             hcCCcEEEEcCCHHHHHhhCCEEEE
Confidence            5677889999999999887776543

>PRK06696 uridine kinase; Validated

Probab=89.67  E-value=0.23  Score=45.95  Aligned_cols=27  Identities=11%  Similarity=0.278  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+|.|.|++||||+|+.++|+...+
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~   47 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIK   47 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            445777889999999999999988654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=89.61  E-value=0.29  Score=44.07  Aligned_cols=23  Identities=17%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +|.|+||+||||+|+.+.|....
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999998865

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PTZ00088 adenylate kinase 1; Provisional

Probab=89.42  E-value=0.3  Score=46.09  Aligned_cols=22  Identities=41%  Similarity=0.626  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |||+||+||||+|+..+|.+.+
T Consensus         9 Ivl~G~PGsGK~T~a~~La~~~   30 (229)
T PTZ00088          9 IVLFGAPGVGKGTFAEILSKKE   30 (229)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            8999999999999999998863

>PF13173 AAA_14: AAA domain

Probab=89.41  E-value=0.45  Score=40.06  Aligned_cols=26  Identities=31%  Similarity=0.615  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ++.++|.||.||||+|+..++++...
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~   27 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL   27 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            57899999999999999999987654

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=89.33  E-value=0.42  Score=43.89  Aligned_cols=35  Identities=20%  Similarity=0.453  Sum_probs=24.7

Q ss_pred             cccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHH
Q psy12793        174 LVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       174 i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      +.+|.++..+....+ +++|+||||+||+|+...+.
T Consensus         9 fr~~~~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~   43 (204)
T cd03240           9 IRSFHERSEIEFFSP-LTLIVGQNGAGKTTIIEALK   43 (204)
T ss_pred             cccccCceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence            344444444443333 88999999999999999873

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PTZ00301 uridine kinase; Provisional

Probab=89.33  E-value=0.38  Score=44.89  Aligned_cols=24  Identities=17%  Similarity=0.522  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+|-|.|+|||||+|+.+.|+++.
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHH
Confidence            466778999999999999887653

>PRK04040 adenylate kinase; Provisional

Probab=89.22  E-value=0.42  Score=43.57  Aligned_cols=26  Identities=31%  Similarity=0.560  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .+.|+|.|.+||||+|+.+.|.+..+
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence            45789999999999999999998875

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=89.21  E-value=0.35  Score=40.50  Aligned_cols=21  Identities=43%  Similarity=0.738  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++.++++..
T Consensus         4 i~iiG~~~vGKTsl~~~~~~~   24 (162)
T cd04138           4 LVVVGAGGVGKSALTIQLIQN   24 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999999874

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=89.14  E-value=0.37  Score=45.71  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=25.8

Q ss_pred             ccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793        175 VTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       175 ~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ...|.|.. ....+..+|++||||+||+|+-+.++.
T Consensus        19 ~~le~vsL-~ia~ge~vv~lGpSGcGKTTLLnl~AG   53 (259)
T COG4525          19 SALEDVSL-TIASGELVVVLGPSGCGKTTLLNLIAG   53 (259)
T ss_pred             hhhhccce-eecCCCEEEEEcCCCccHHHHHHHHhc
Confidence            34444442 234578999999999999999987765

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=88.96  E-value=0.5  Score=44.66  Aligned_cols=28  Identities=18%  Similarity=0.400  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          22 ISESEVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999887754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK14528 adenylate kinase; Provisional

Probab=88.93  E-value=0.41  Score=43.22  Aligned_cols=24  Identities=21%  Similarity=0.574  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +-|+|+||+||||+|+.++|...+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            458889999999999999997653

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=88.93  E-value=0.43  Score=42.64  Aligned_cols=28  Identities=29%  Similarity=0.439  Sum_probs=23.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.+....
T Consensus        15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        15 AERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999887654

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=88.92  E-value=0.47  Score=42.68  Aligned_cols=29  Identities=28%  Similarity=0.539  Sum_probs=24.4

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ..+..++|+||+|+||+|+.+.|+...|.
T Consensus        23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~   51 (186)
T cd01130          23 EARKNILISGGTGSGKTTLLNALLAFIPP   51 (186)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence            35778999999999999999988876553

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK13949 shikimate kinase; Provisional

Probab=88.91  E-value=0.44  Score=42.53  Aligned_cols=24  Identities=21%  Similarity=0.508  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +-|+|+|++|+||+|+...|.+..
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l   25 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALAREL   25 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998764

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=88.89  E-value=0.44  Score=42.91  Aligned_cols=25  Identities=24%  Similarity=0.553  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +..++|+|+||+||+|+.+.|....
T Consensus         3 ge~i~l~G~sGsGKSTl~~~la~~l   27 (176)
T PRK09825          3 GESYILMGVSGSGKSLIGSKIAALF   27 (176)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhc
Confidence            5688999999999999999888753

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=88.85  E-value=0.44  Score=43.10  Aligned_cols=28  Identities=18%  Similarity=0.275  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~   51 (213)
T cd03262          24 KKGEVVVIIGPSGSGKSTLLRCINLLEE   51 (213)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4688999999999999999999987543

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd04159 Arl10_like Arl10-like subfamily

Probab=88.83  E-value=0.33  Score=40.15  Aligned_cols=21  Identities=19%  Similarity=0.471  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++.++|...
T Consensus         2 i~i~G~~~~GKssl~~~l~~~   22 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGG   22 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccC
Confidence            688999999999999999774

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=88.83  E-value=0.42  Score=43.25  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHH
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      ..+..++|+||||+||+|+.+.++
T Consensus        19 ~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          19 PLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHh
Confidence            467899999999999999998774

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=88.83  E-value=0.44  Score=43.16  Aligned_cols=28  Identities=14%  Similarity=0.279  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999999887754

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=88.82  E-value=0.43  Score=43.93  Aligned_cols=28  Identities=14%  Similarity=0.223  Sum_probs=24.4

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   56 (233)
T cd03258          29 PKGEIFGIIGRSGAGKSTLIRCINGLER   56 (233)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999887654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=88.82  E-value=0.51  Score=44.38  Aligned_cols=34  Identities=15%  Similarity=0.438  Sum_probs=24.1

Q ss_pred             ccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHH
Q psy12793        175 VTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       175 ~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      -+|..+..+.+. ....+|+||+|+||+++.+.+.
T Consensus        10 ~~~~~~~~~~~~-~~~~~i~G~NGsGKStll~ai~   43 (247)
T cd03275          10 KSYKGRHVIGPF-DRFTCIIGPNGSGKSNLMDAIS   43 (247)
T ss_pred             cccCCCeeecCC-CCeEEEECCCCCCHHHHHHHHH
Confidence            445543333333 3588999999999999998775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00889 adenylylsulfate kinase; Provisional

Probab=88.82  E-value=0.46  Score=41.88  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+..|+|.|++||||+|+.+.|....
T Consensus         3 ~g~~i~~~G~~GsGKST~a~~la~~l   28 (175)
T PRK00889          3 RGVTVWFTGLSGAGKTTIARALAEKL   28 (175)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999888754

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=88.79  E-value=0.44  Score=43.38  Aligned_cols=28  Identities=21%  Similarity=0.254  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~   55 (218)
T cd03255          28 EKGEFVAIVGPSGSGKSTLLNILGGLDR   55 (218)
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence            4678999999999999999999887543

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=88.78  E-value=0.44  Score=43.11  Aligned_cols=27  Identities=19%  Similarity=0.369  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          25 KKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999887654

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=88.74  E-value=0.44  Score=39.90  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|+|++||||+|+...|....
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            37889999999999999999864

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=88.67  E-value=0.44  Score=43.46  Aligned_cols=28  Identities=18%  Similarity=0.228  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~   56 (221)
T TIGR02211        29 GKGEIVAIVGSSGSGKSTLLHLLGGLDN   56 (221)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999887543

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=88.62  E-value=0.44  Score=43.86  Aligned_cols=27  Identities=19%  Similarity=0.191  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.++...
T Consensus        11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         11 GYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            457899999999999999999887653

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=88.59  E-value=0.46  Score=43.25  Aligned_cols=28  Identities=18%  Similarity=0.311  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        26 ITKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999888754

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=88.58  E-value=0.42  Score=43.17  Aligned_cols=25  Identities=16%  Similarity=0.375  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      +|-|.|||||||+|+.++|......
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~   25 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNK   25 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCc
Confidence            3668899999999999999886553

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>smart00763 AAA_PrkA PrkA AAA domain

Probab=88.58  E-value=0.43  Score=48.35  Aligned_cols=26  Identities=27%  Similarity=0.500  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+++|.|.||+|+||+|+.+.|+...
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l  102 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGL  102 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            46889999999999999999998754

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=88.53  E-value=0.44  Score=41.49  Aligned_cols=26  Identities=23%  Similarity=0.500  Sum_probs=21.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCCCc
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKFPDKY  216 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~p~~F  216 (352)
                      |+|+|++||||++|.+++...++..+
T Consensus         2 i~~~G~~~~GKTsl~~~l~~~~~~~~   27 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQGEIPKKV   27 (167)
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCccc
Confidence            78999999999999999987655433

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=88.49  E-value=0.46  Score=43.94  Aligned_cols=27  Identities=11%  Similarity=0.283  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315        26 NPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999887654

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=88.48  E-value=0.4  Score=41.63  Aligned_cols=26  Identities=23%  Similarity=0.604  Sum_probs=17.6

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+.++|.|++|+||+++.+.++...
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~~~~   48 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALLDRL   48 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            45889999999999999999887643

>cd01131 PilT Pilus retraction ATPase PilT

Probab=88.48  E-value=0.42  Score=43.58  Aligned_cols=24  Identities=17%  Similarity=0.396  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +|+|+||+||||+|+...|+...+
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            688999999999999998887654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=88.48  E-value=0.41  Score=42.16  Aligned_cols=32  Identities=25%  Similarity=0.469  Sum_probs=26.3

Q ss_pred             eEeccCCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        180 VVKLPSFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       180 V~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +..+++....-|+|+|.+|+||+++.++|...
T Consensus        16 ~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~   47 (196)
T PRK00454         16 LEQLPPDDGPEIAFAGRSNVGKSSLINALTNR   47 (196)
T ss_pred             HhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            44455566677999999999999999999874

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=88.47  E-value=0.47  Score=43.85  Aligned_cols=28  Identities=14%  Similarity=0.415  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261          23 VRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999988754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=88.36  E-value=0.52  Score=43.98  Aligned_cols=26  Identities=15%  Similarity=0.468  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...++|.||+|+||+|+.+.+....+
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            45789999999999999999988654

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK02496 adk adenylate kinase; Provisional

Probab=88.36  E-value=0.42  Score=42.50  Aligned_cols=22  Identities=27%  Similarity=0.543  Sum_probs=19.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+||+||||+|+.+.|....
T Consensus         4 i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          4 LIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999998764

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=88.31  E-value=0.5  Score=42.94  Aligned_cols=28  Identities=21%  Similarity=0.273  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259          23 VEPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999887754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=88.21  E-value=0.47  Score=45.12  Aligned_cols=26  Identities=19%  Similarity=0.291  Sum_probs=22.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ...+-.+.|+|||||||+||-+.+-.
T Consensus        28 i~~Ge~vaI~GpSGSGKSTLLniig~   53 (226)
T COG1136          28 IEAGEFVAIVGPSGSGKSTLLNLLGG   53 (226)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhc
Confidence            45678999999999999999987754

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=88.20  E-value=0.5  Score=42.72  Aligned_cols=27  Identities=19%  Similarity=0.469  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          24 YAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999887754

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=88.16  E-value=0.51  Score=42.73  Aligned_cols=29  Identities=21%  Similarity=0.321  Sum_probs=24.6

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (210)
T cd03269          23 VEKGEIFGLLGPNGAGKTTTIRMILGIIL   51 (210)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34678999999999999999999987543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=88.14  E-value=0.5  Score=43.57  Aligned_cols=28  Identities=18%  Similarity=0.281  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|+...
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256          24 INPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3467899999999999999999987654

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1451|consensus

Probab=88.10  E-value=0.4  Score=51.20  Aligned_cols=40  Identities=25%  Similarity=0.601  Sum_probs=31.7

Q ss_pred             cccccccCceEEEee-ccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         87 AGIAFQIGDILQIIS-KDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        87 ~~LsF~kGDIL~Vl~-~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+|+|..|-|+.=+- ...++|.+++   .+|..||||+||++.
T Consensus       771 selsf~~gt~f~nv~~S~e~Gwl~Gt---LnGktglip~nyve~  811 (812)
T KOG1451|consen  771 SELSFEPGTIFTNVYESNEDGWLVGT---LNGKTGLIPSNYVEP  811 (812)
T ss_pred             ccccccCcceeeeecccCCCCceeee---cCCCcccCcccccCc
Confidence            379999999988776 4456677776   378999999999863

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=88.04  E-value=0.52  Score=42.92  Aligned_cols=27  Identities=26%  Similarity=0.514  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          26 YKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999888754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=87.99  E-value=0.49  Score=44.07  Aligned_cols=28  Identities=21%  Similarity=0.362  Sum_probs=24.2

Q ss_pred             cCCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        184 PSFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       184 p~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ....+-++||.||||+||+|+.+.|...
T Consensus        33 sV~aGECvvL~G~SG~GKStllr~LYaN   60 (235)
T COG4778          33 SVNAGECVVLHGPSGSGKSTLLRSLYAN   60 (235)
T ss_pred             EecCccEEEeeCCCCCcHHHHHHHHHhc
Confidence            3456889999999999999999998664

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=87.96  E-value=0.51  Score=43.11  Aligned_cols=28  Identities=25%  Similarity=0.459  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   56 (228)
T cd03257          29 KKGETLGLVGESGSGKSTLARAILGLLK   56 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999887543

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>COG1162 Predicted GTPases [General function prediction only]

Probab=87.88  E-value=0.37  Score=47.66  Aligned_cols=26  Identities=38%  Similarity=0.648  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..++..||+|+|||||+||.++|.-+
T Consensus       162 l~~~~svl~GqSGVGKSSLiN~L~p~  187 (301)
T COG1162         162 LAGKITVLLGQSGVGKSTLINALLPE  187 (301)
T ss_pred             hcCCeEEEECCCCCcHHHHHHhhCch
Confidence            45789999999999999999999653

>PRK13946 shikimate kinase; Provisional

Probab=87.85  E-value=0.68  Score=41.54  Aligned_cols=27  Identities=26%  Similarity=0.566  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+.|+|+|.+||||+|+.+.|.+..
T Consensus         8 ~~~~~I~l~G~~GsGKsti~~~LA~~L   34 (184)
T PRK13946          8 LGKRTVVLVGLMGAGKSTVGRRLATML   34 (184)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999998864

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=87.84  E-value=0.5  Score=43.06  Aligned_cols=28  Identities=21%  Similarity=0.456  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          23 VPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999887653

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK00279 adk adenylate kinase; Reviewed

Probab=87.77  E-value=0.52  Score=43.20  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .|+|+||+||||+|+..+|...+.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~   25 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            388899999999999999987643

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=87.77  E-value=0.57  Score=42.47  Aligned_cols=29  Identities=14%  Similarity=0.220  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~   49 (211)
T cd03298          21 FAQGEITAIVGPSGSGKSTLLNLIAGFET   49 (211)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35688999999999999999998877543

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=87.76  E-value=0.66  Score=40.57  Aligned_cols=24  Identities=29%  Similarity=0.589  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +.|+|+|++|+||+|+.+.|.+..
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~l   26 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQAL   26 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            578899999999999999998864

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=87.70  E-value=0.57  Score=42.51  Aligned_cols=27  Identities=26%  Similarity=0.402  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.+....
T Consensus        26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        26 RKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999887654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd00879 Sar1 Sar1 subfamily

Probab=87.68  E-value=0.52  Score=41.42  Aligned_cols=25  Identities=16%  Similarity=0.345  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .-|+|+|++||||+++..++....+
T Consensus        20 ~ki~ilG~~~~GKStLi~~l~~~~~   44 (190)
T cd00879          20 AKILFLGLDNAGKTTLLHMLKDDRL   44 (190)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4469999999999999999987543

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=87.68  E-value=0.57  Score=42.95  Aligned_cols=29  Identities=21%  Similarity=0.423  Sum_probs=24.8

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   54 (229)
T cd03254          26 IKPGETVAIVGPTGAGKTTLINLLMRFYD   54 (229)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            35678999999999999999999987654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=87.66  E-value=0.58  Score=43.48  Aligned_cols=28  Identities=18%  Similarity=0.370  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ...++.|+||+||||+|+.+.|+...+.
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~   59 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQQ   59 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4567888999999999999999886554

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=87.64  E-value=0.51  Score=43.46  Aligned_cols=27  Identities=19%  Similarity=0.287  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          24 RPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            467899999999999999999887654

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK01184 hypothetical protein; Provisional

Probab=87.63  E-value=0.57  Score=41.55  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=18.0

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..|+|+|++||||+|+.. ++++
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~   23 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IARE   23 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHH
Confidence            478899999999999875 5554

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=87.60  E-value=0.53  Score=42.39  Aligned_cols=22  Identities=27%  Similarity=0.593  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++|+||+||||+++.+.|.+.
T Consensus         5 ~~ll~GpsGvGKT~la~~la~~   26 (171)
T PF07724_consen    5 NFLLAGPSGVGKTELAKALAEL   26 (171)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5788999999999999998875

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=87.55  E-value=0.58  Score=43.33  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864        24 VRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            3468899999999999999999988654

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=87.53  E-value=0.57  Score=43.27  Aligned_cols=28  Identities=21%  Similarity=0.434  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||+|+||+|+.+.|....+
T Consensus        10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   37 (230)
T TIGR02770        10 KRGEVLALVGESGSGKSLTCLAILGLLP   37 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999999887643

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=87.51  E-value=0.54  Score=38.54  Aligned_cols=40  Identities=28%  Similarity=0.416  Sum_probs=29.4

Q ss_pred             cccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         87 AGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        87 ~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      ..|+.++|++|.|+...+.+=|-+|  |..|+-|+||..++.
T Consensus        31 kDLpi~~GE~LeVI~~t~~~kvlCR--N~~GKYGYV~~~~L~   70 (89)
T PF14603_consen   31 KDLPIKPGEILEVIQFTDDNKVLCR--NSEGKYGYVLRSHLL   70 (89)
T ss_dssp             TB----TT-B-EEEEESSSSEEEEE--ETTTEEEEEEGGGS-
T ss_pred             ccCCcCCCCEEEEEEeCCCCeEEEe--CCCCceeEEEHHHcc
Confidence            3699999999999999888889999  678999999988764

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=87.50  E-value=0.5  Score=39.81  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++.+++...
T Consensus         3 i~~vG~~~vGKTsli~~l~~~   23 (168)
T cd04119           3 VISMGNSGVGKSCIIKRYCEG   23 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999999875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=87.44  E-value=0.61  Score=42.26  Aligned_cols=28  Identities=21%  Similarity=0.277  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|+...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301          23 IADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999888764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=87.43  E-value=0.62  Score=44.13  Aligned_cols=27  Identities=15%  Similarity=0.327  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFPDK  215 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p~~  215 (352)
                      .+|-|.|+|||||+|+.++|...++..
T Consensus         9 iiIgIaG~SgSGKTTva~~l~~~~~~~   35 (218)
T COG0572           9 IIIGIAGGSGSGKTTVAKELSEQLGVE   35 (218)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence            456667999999999999999987743

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=87.43  E-value=0.59  Score=42.37  Aligned_cols=27  Identities=15%  Similarity=0.378  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222          23 KEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            467899999999999999999887653

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=87.41  E-value=0.43  Score=41.58  Aligned_cols=21  Identities=19%  Similarity=0.488  Sum_probs=17.8

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|+.|+||+||.+.|.+.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            789999999999999999987

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=87.41  E-value=0.53  Score=39.99  Aligned_cols=21  Identities=33%  Similarity=0.676  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++.+++...
T Consensus         3 i~v~G~~~~GKTsli~~~~~~   23 (164)
T smart00173        3 LVVLGSGGVGKSALTIQFVQG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999999863

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=87.36  E-value=0.55  Score=40.04  Aligned_cols=22  Identities=23%  Similarity=0.495  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+|++||||++|.++|...+
T Consensus         2 i~~vG~~~~GKstLi~~l~~~~   23 (167)
T cd04160           2 VLILGLDNAGKTTFLEQLKTLF   23 (167)
T ss_pred             EEEEecCCCCHHHHHHHHhhhc
Confidence            7889999999999999997653

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=87.36  E-value=0.6  Score=41.39  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +-|.|+||+|+||+||.++|..+.
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~   25 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE   25 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC
Confidence            457889999999999999997754

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=87.36  E-value=0.67  Score=42.51  Aligned_cols=28  Identities=21%  Similarity=0.251  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|+...
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          23 IPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3468899999999999999999998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=87.35  E-value=0.61  Score=41.97  Aligned_cols=28  Identities=21%  Similarity=0.240  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (206)
T TIGR03608        22 EKGKMYAIIGESGSGKSTLLNIIGLLEK   49 (206)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999999887543

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=87.34  E-value=0.56  Score=45.46  Aligned_cols=26  Identities=23%  Similarity=0.337  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+|||||||+||-+.|..-
T Consensus        26 ~~G~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          26 PKGEITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            45789999999999999999988764

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=87.33  E-value=0.62  Score=42.58  Aligned_cols=27  Identities=22%  Similarity=0.380  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265          24 RRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999888754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=87.32  E-value=0.59  Score=42.72  Aligned_cols=27  Identities=15%  Similarity=0.272  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          28 EEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PLN02674 adenylate kinase

Probab=87.29  E-value=0.56  Score=44.93  Aligned_cols=24  Identities=25%  Similarity=0.587  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..|+|+||+||||+|+..+|++.+
T Consensus        32 ~~i~l~G~PGsGKgT~a~~La~~~   55 (244)
T PLN02674         32 KRLILIGPPGSGKGTQSPIIKDEY   55 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHc
Confidence            458889999999999999998865

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=87.25  E-value=0.55  Score=38.31  Aligned_cols=21  Identities=29%  Similarity=0.589  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++|+||+|+.+.|...
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            678999999999999999974

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd00876 Ras Ras family

Probab=87.23  E-value=0.54  Score=39.30  Aligned_cols=21  Identities=38%  Similarity=0.683  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++.+++...
T Consensus         2 i~i~G~~~~GKTsli~~l~~~   22 (160)
T cd00876           2 VVVLGAGGVGKSAITIQFVKG   22 (160)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            688999999999999999864

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK09087 hypothetical protein; Validated

Probab=87.22  E-value=0.41  Score=44.92  Aligned_cols=37  Identities=24%  Similarity=0.384  Sum_probs=25.9

Q ss_pred             cceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        176 TYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       176 sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|..+.+.+....++++|.||+|+||++|.+.+....
T Consensus        32 a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~   68 (226)
T PRK09087         32 AVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS   68 (226)
T ss_pred             HHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc
Confidence            3443433333345779999999999999999776543

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=87.16  E-value=0.47  Score=39.61  Aligned_cols=23  Identities=17%  Similarity=0.495  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      -|+|+|.+||||++|.++++...
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~   24 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEE   24 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCc
Confidence            37899999999999999997653

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=87.15  E-value=0.63  Score=40.21  Aligned_cols=29  Identities=14%  Similarity=0.313  Sum_probs=24.6

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||+|+||+|+.+.|....+
T Consensus        23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (144)
T cd03221          23 INPGDRIGLVGRNGAGKSTLLKLIAGELE   51 (144)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            35678999999999999999998877543

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=87.12  E-value=0.64  Score=43.19  Aligned_cols=29  Identities=24%  Similarity=0.338  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (242)
T cd03295          24 IAKGEFLVLIGPSGSGKTTTMKMINRLIE   52 (242)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35678999999999999999998877543

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=87.12  E-value=0.67  Score=41.15  Aligned_cols=29  Identities=17%  Similarity=0.242  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (178)
T cd03229          23 IEAGEIVALLGPSGSGKSTLLRCIAGLEE   51 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34678999999999999999999986544

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=87.09  E-value=0.52  Score=39.29  Aligned_cols=20  Identities=30%  Similarity=0.576  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChhHHHHHHHh
Q psy12793        191 LVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~  210 (352)
                      |+|+|++|+||+++.+.|+.
T Consensus         2 i~l~G~~g~GKTtL~~~l~~   21 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTN   21 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhc
Confidence            68999999999999999983

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=87.09  E-value=0.73  Score=40.73  Aligned_cols=29  Identities=14%  Similarity=0.376  Sum_probs=24.6

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||+|+||+|+.+.|....+
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          25 IEPGESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            34678999999999999999999887543

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=87.08  E-value=0.6  Score=42.92  Aligned_cols=28  Identities=14%  Similarity=0.424  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~   58 (226)
T cd03234          31 ESGQVMAILGSSGSGKTTLLDAISGRVE   58 (226)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence            4678999999999999999998877644

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>KOG2546|consensus

Probab=87.08  E-value=0.42  Score=49.18  Aligned_cols=47  Identities=23%  Similarity=0.555  Sum_probs=40.9

Q ss_pred             HHhhCCCCcccccccc---ccccceeEEEeecCCcchhhhhccCC-CCCccccCC
Q psy12793        208 LINKFPDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNV-AGSAGLIPS  258 (352)
Q Consensus       208 L~~~~p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~p~  258 (352)
                      ++++.-.+|.|.+..+   +|.-+-||=||-|+|..||    +|. .|++||||+
T Consensus       422 yLEkVv~iydy~~~KddeLsf~E~ailyv~kknddgw~----EgV~~~VTglFpg  472 (483)
T KOG2546|consen  422 YLEKVVAIYDYTADKDDELSFAEGAILYVLKKNDDGWY----EGVQDGVTGLFPG  472 (483)
T ss_pred             HHHHHHhhcccccccccccccccccEEEEEEecCCcch----hheecCcceeccC
Confidence            4466667788887766   9999999999999999999    777 899999998

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=87.06  E-value=0.65  Score=42.02  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.+....+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   51 (208)
T cd03268          24 KKGEIYGFLGPNGAGKTTTMKIILGLIK   51 (208)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4678999999999999999999876543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=87.04  E-value=0.51  Score=44.27  Aligned_cols=23  Identities=30%  Similarity=0.600  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +|||+|++||||+|+.+.|....
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l   23 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKL   23 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998754

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=87.04  E-value=0.65  Score=42.85  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+|+|.|++||||+|+..+|+...
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~   27 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHR   27 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4578889999999999999998874

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=87.04  E-value=0.67  Score=41.71  Aligned_cols=29  Identities=14%  Similarity=0.272  Sum_probs=24.6

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+|++|+||+|+.+.|+...+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (195)
T PRK13541         23 FLPSAITYIKGANGCGKSSLLRMIAGIMQ   51 (195)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34678999999999999999999987643

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=87.02  E-value=0.65  Score=43.10  Aligned_cols=28  Identities=18%  Similarity=0.246  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296          25 IPSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999998754

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG2528|consensus

Probab=87.02  E-value=0.26  Score=50.85  Aligned_cols=56  Identities=25%  Similarity=0.501  Sum_probs=46.2

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC-CCceEEEEcCCCCceeeecCChhHHHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPSPELQEWR  131 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D-~~WWqaR~~~~~g~~GlIPS~~v~e~r  131 (352)
                      ..|++||+..+..+       +|+...||++.|.+.++ ++||+.+  |..|..|++|--|++--+
T Consensus         4 k~RamyDf~~E~~s-------Elsi~~~evl~i~~e~~~~GwLeg~--Nsrge~GlfPa~yVeV~~   60 (490)
T KOG2528|consen    4 KARAMYDFQSEGHS-------ELSIWEGEVLSITSEDVIEGWLEGS--NSRGERGLFPASYVEVTR   60 (490)
T ss_pred             chhhhcchhhcccc-------cccccccceeeecCcccccccccCC--CccCccCCCcccceeeec
Confidence            46889999887543       69999999999999875 6788887  668899999999998655

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=87.01  E-value=0.6  Score=42.41  Aligned_cols=27  Identities=15%  Similarity=0.426  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          23 KPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            467899999999999999999887654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=86.99  E-value=0.65  Score=42.68  Aligned_cols=27  Identities=19%  Similarity=0.326  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          24 KQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999987753

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=86.99  E-value=0.83  Score=41.18  Aligned_cols=36  Identities=14%  Similarity=0.370  Sum_probs=25.6

Q ss_pred             ccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHH
Q psy12793        173 DLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       173 ~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      +.-+|+++...+.. .++.+|+||+|+||+++.+.+.
T Consensus         8 nf~~~~~~~~~~~~-~~~~~i~G~NGsGKSnil~Ai~   43 (178)
T cd03239           8 NFKSYRDETVVGGS-NSFNAIVGPNGSGKSNIVDAIC   43 (178)
T ss_pred             CccCCCCCEEecCC-CceEEEECCCCCCHHHHHHHHH
Confidence            34567665544332 2388999999999999998763

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>PRK10908 cell division protein FtsE; Provisional

Probab=86.98  E-value=0.66  Score=42.46  Aligned_cols=29  Identities=14%  Similarity=0.146  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (222)
T PRK10908         25 MRPGEMAFLTGHSGAGKSTLLKLICGIER   53 (222)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35688999999999999999999887543

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=86.98  E-value=0.67  Score=42.53  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.+....
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   60 (228)
T PRK10584         34 KRGETIALIGESGSGKSTLLAILAGLD   60 (228)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            467899999999999999999988764

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=86.96  E-value=0.68  Score=42.03  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=23.0

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ....+|+|.||+||||+++...+.++.
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~   62 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAA   62 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999987653

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=86.95  E-value=0.66  Score=42.88  Aligned_cols=27  Identities=15%  Similarity=0.235  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         33 GEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999887654

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=86.89  E-value=0.66  Score=43.88  Aligned_cols=29  Identities=28%  Similarity=0.441  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   52 (255)
T PRK11248         24 LESGELLVVLGPSGCGKTTLLNLIAGFVP   52 (255)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34678999999999999999999987643

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=86.83  E-value=0.67  Score=42.16  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+|+||+||+|+.+.|....+
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   56 (218)
T cd03266          29 KPGEVTGLLGPNGAGKTTTLRMLAGLLE   56 (218)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4678999999999999999998877543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=86.81  E-value=0.64  Score=42.78  Aligned_cols=23  Identities=30%  Similarity=0.580  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +.|+|+||+||||+|-..+|+..
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~   24 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAAR   24 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCchHhHHHHHHHH
Confidence            57889999999999999999875

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=86.77  E-value=0.69  Score=42.13  Aligned_cols=28  Identities=14%  Similarity=0.344  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~   55 (220)
T cd03245          28 RAGEKVAIIGRVGSGKSTLLKLLAGLYK   55 (220)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4688999999999999999999887543

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>KOG0058|consensus

Probab=86.76  E-value=1  Score=49.28  Aligned_cols=62  Identities=23%  Similarity=0.379  Sum_probs=37.9

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC-CCCccccccccccccceeEEEeecCCcchhhhhccCC-CCCccccCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF-PDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNV-AGSAGLIPS  258 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~-p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~p~  258 (352)
                      ++..+-|+||||+||+|+...|.+-+ |.     .-+ ++.-|   ..|..-||.||. +.-|. ---+.||..
T Consensus       493 pGe~vALVGPSGsGKSTiasLL~rfY~Pt-----sG~-IllDG---~~i~~~~~~~lr-~~Ig~V~QEPvLFs~  556 (716)
T KOG0058|consen  493 PGEVVALVGPSGSGKSTIASLLLRFYDPT-----SGR-ILLDG---VPISDINHKYLR-RKIGLVGQEPVLFSG  556 (716)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCC-----CCe-EEECC---eehhhcCHHHHH-HHeeeeeccceeecc
Confidence            56789999999999999999887742 22     111 11111   345778999995 44433 223344443

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=86.75  E-value=0.7  Score=42.61  Aligned_cols=27  Identities=11%  Similarity=0.241  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         31 RAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467899999999999999999887754

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=86.74  E-value=0.66  Score=42.86  Aligned_cols=26  Identities=19%  Similarity=0.450  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+||||+||+|+.+.|...
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        24 KKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999998875

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=86.70  E-value=0.73  Score=40.20  Aligned_cols=26  Identities=31%  Similarity=0.489  Sum_probs=21.3

Q ss_pred             CCCcEEEEE--cCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLL--GAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~--GPsG~gk~tl~~~L~~~  211 (352)
                      .+.+|+||+  |++|+||+.+.+.+++.
T Consensus        49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~   76 (127)
T PF06309_consen   49 NPRKPLVLSFHGWTGTGKNFVSRLIAEH   76 (127)
T ss_pred             CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence            466778864  99999999999888775

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>KOG3523|consensus

Probab=86.64  E-value=0.23  Score=53.07  Aligned_cols=51  Identities=20%  Similarity=0.540  Sum_probs=41.9

Q ss_pred             cccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         72 FNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        72 fDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      -.|.+...+       +|++..+||+.|+.+..++|..+.+.. .|..|++|+.|+++-
T Consensus       615 ~sy~a~q~D-------el~Le~~Dvv~v~~k~~DGWl~GeRl~-Dge~GWFP~~~veeI  665 (695)
T KOG3523|consen  615 HSYKAKQPD-------ELTLELADVVNVLQKTPDGWLEGERLR-DGERGWFPSSYVEEI  665 (695)
T ss_pred             eccccCCCc-------eeeeehhhhhhhhhcCCCccccccccc-cCccCcchHHHHHHh
Confidence            346665544       799999999999999999999888754 688999999999863

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=86.64  E-value=0.71  Score=40.83  Aligned_cols=28  Identities=21%  Similarity=0.399  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   51 (173)
T cd03230          24 EKGEIYGLLGPNGAGKTTLIKIILGLLK   51 (173)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999998877543

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=86.62  E-value=0.64  Score=42.15  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+ .+.|+||||+||+|+.+.|....
T Consensus        25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          25 PG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            36 88999999999999999887653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG3875|consensus

Probab=86.58  E-value=0.2  Score=49.74  Aligned_cols=42  Identities=29%  Similarity=0.432  Sum_probs=34.5

Q ss_pred             cccccccc---ccccceeEEEeecCCc-----chhhhhccCCCCCccccCC
Q psy12793        216 YAYPVPQF---ITVCSVMFQIISKDDH-----NWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       216 F~~~v~~~---~~~~~~~~~vl~k~~~-----~w~~~~~~~~~~~~g~~p~  258 (352)
                      |+|.+.+.   +|.+||+++|++|+|.     +||+++.. -.+-+|+||.
T Consensus       275 YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~-dg~~tG~iP~  324 (362)
T KOG3875|consen  275 YDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATR-DGGTTGLIPI  324 (362)
T ss_pred             hhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeec-cCCeeeeeeh
Confidence            66665554   8999999999999985     59998876 5677899998

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=86.56  E-value=0.67  Score=42.56  Aligned_cols=25  Identities=36%  Similarity=0.667  Sum_probs=19.6

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++.|+|+||+|+||++|-.+|...
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~   26 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNG   26 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHS
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcC
Confidence            3567899999999999999999886

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=86.54  E-value=0.66  Score=39.57  Aligned_cols=25  Identities=36%  Similarity=0.527  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +.|+|+|.+||||+++.++|.....
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~   25 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKP   25 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCC
Confidence            4689999999999999999988643

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=86.54  E-value=0.67  Score=43.28  Aligned_cols=28  Identities=18%  Similarity=0.477  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   54 (253)
T TIGR02323        27 YPGEVLGIVGESGSGKSTLLGCLAGRLA   54 (253)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999998887644

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>cd04113 Rab4 Rab4 subfamily

Probab=86.53  E-value=0.62  Score=39.54  Aligned_cols=21  Identities=14%  Similarity=0.653  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++.++|+..
T Consensus         3 i~v~G~~~vGKTsli~~l~~~   23 (161)
T cd04113           3 FIIIGSSGTGKSCLLHRFVEN   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            688999999999999999864

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=86.52  E-value=0.77  Score=44.40  Aligned_cols=28  Identities=14%  Similarity=0.482  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+++++|+||+|+||+.+.+.++...+
T Consensus        31 ~~~~pvLl~G~~GtGKT~li~~~l~~l~   58 (272)
T PF12775_consen   31 SNGRPVLLVGPSGTGKTSLIQNFLSSLD   58 (272)
T ss_dssp             HCTEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred             HcCCcEEEECCCCCchhHHHHhhhccCC
Confidence            4689999999999999999988777544

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=86.49  E-value=0.68  Score=43.25  Aligned_cols=26  Identities=19%  Similarity=0.333  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+||||+||+|+.+.|...
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14242         30 EQNQVTALIGPSGCGKSTFLRCLNRM   55 (253)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            46789999999999999999998864

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=86.45  E-value=0.74  Score=40.48  Aligned_cols=29  Identities=21%  Similarity=0.401  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.+....+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (163)
T cd03216          23 VRRGEVHALLGENGAGKSTLMKILSGLYK   51 (163)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34678999999999999999998877543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=86.42  E-value=0.75  Score=41.87  Aligned_cols=29  Identities=24%  Similarity=0.440  Sum_probs=24.8

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.+....+
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   53 (207)
T PRK13539         25 LAAGEALVLTGPNGSGKTTLLRLIAGLLP   53 (207)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34688999999999999999998887644

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=86.42  E-value=0.66  Score=40.53  Aligned_cols=24  Identities=21%  Similarity=0.347  Sum_probs=19.9

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ...+.||.||+|+||+|+...+.-
T Consensus        18 ~~g~~vi~G~Ng~GKStil~ai~~   41 (202)
T PF13476_consen   18 SPGLNVIYGPNGSGKSTILEAIRY   41 (202)
T ss_dssp             -SEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999987643

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=86.41  E-value=0.75  Score=41.72  Aligned_cols=27  Identities=22%  Similarity=0.532  Sum_probs=21.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ....+++|.|++||||+++...+...+
T Consensus        13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~   39 (199)
T PF06414_consen   13 EKPTLIIIAGQPGSGKSTLARQLLEEF   39 (199)
T ss_dssp             SS-EEEEEES-TTSTTHHHHHHHHHHT
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHhhhhc
Confidence            345677888999999999999998875

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=86.38  E-value=0.82  Score=41.66  Aligned_cols=57  Identities=14%  Similarity=0.212  Sum_probs=34.9

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCC-cccc-ccccccccceeEEEeecCCcchhhhhccCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDK-YAYP-VPQFITVCSVMFQIISKDDHNWWQARKDNV  249 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~-F~~~-v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~  249 (352)
                      ...+.|+|++||||+|+..+|+...... +... +-|    .+.-+.+ ++...+.|+.++.|-
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~----~~~~~~~-d~~g~Ds~~~r~aGA   64 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH----THHDMDV-DKPGKDSYELRKAGA   64 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE----cCCCccc-CCCCcHHHHHHHhCC
Confidence            4577889999999999999998764321 2111 111    1111222 455677787777664

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=86.38  E-value=0.74  Score=42.71  Aligned_cols=27  Identities=33%  Similarity=0.388  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         26 PQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999987754

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=86.35  E-value=0.65  Score=42.64  Aligned_cols=23  Identities=13%  Similarity=0.284  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ++.++|+||||+||+|+.+.+..
T Consensus        25 g~~~~ltGpNg~GKSTllr~i~~   47 (199)
T cd03283          25 KNGILITGSNMSGKSTFLRTIGV   47 (199)
T ss_pred             CcEEEEECCCCCChHHHHHHHHH
Confidence            58999999999999999987754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=86.34  E-value=0.79  Score=40.79  Aligned_cols=27  Identities=22%  Similarity=0.393  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.+....
T Consensus        23 ~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214          23 EAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999887654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=86.32  E-value=0.64  Score=39.10  Aligned_cols=21  Identities=24%  Similarity=0.602  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+++|++||||+++.+++...
T Consensus         3 i~~~G~~~~GKTsl~~~l~~~   23 (164)
T cd04139           3 VIVVGAGGVGKSALTLQFMYD   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999999763

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=86.31  E-value=0.77  Score=42.19  Aligned_cols=25  Identities=28%  Similarity=0.558  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..++++|.||+|+||+++...+..+
T Consensus        41 ~~~~~~l~G~~G~GKT~La~ai~~~   65 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLLQALVAD   65 (227)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999988775

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=86.24  E-value=0.7  Score=43.82  Aligned_cols=24  Identities=29%  Similarity=0.475  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .+.++++|+|||||+|+.++|...
T Consensus       120 ~~~~~~~G~sgvGKStLiN~L~~~  143 (245)
T TIGR00157       120 NRISVFAGQSGVGKSSLINALDPS  143 (245)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhh
Confidence            468999999999999999999864

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=86.22  E-value=0.74  Score=42.32  Aligned_cols=28  Identities=32%  Similarity=0.578  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   51 (230)
T TIGR03410        24 PKGEVTCVLGRNGVGKTTLLKTLMGLLP   51 (230)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999998877543

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=86.21  E-value=0.75  Score=42.66  Aligned_cols=29  Identities=21%  Similarity=0.354  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   54 (241)
T PRK10895         26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVP   54 (241)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34688999999999999999999887543

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=86.18  E-value=0.79  Score=41.29  Aligned_cols=28  Identities=18%  Similarity=0.357  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (198)
T TIGR01189        24 NAGEALQVTGPNGIGKTTLLRILAGLLR   51 (198)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999998877543

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=86.14  E-value=0.81  Score=41.33  Aligned_cols=29  Identities=17%  Similarity=0.234  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.+....+
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   52 (200)
T PRK13540         24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLN   52 (200)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34688999999999999999998877543

>PRK03846 adenylylsulfate kinase; Provisional

Probab=86.13  E-value=0.84  Score=41.37  Aligned_cols=26  Identities=23%  Similarity=0.382  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+..|+|+|++|+||+|+...|....
T Consensus        23 ~~~~i~i~G~~GsGKSTla~~l~~~l   48 (198)
T PRK03846         23 KGVVLWFTGLSGSGKSTVAGALEEAL   48 (198)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999887753

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=86.09  E-value=0.83  Score=40.31  Aligned_cols=29  Identities=21%  Similarity=0.417  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||+|+||+|+.+.|....+
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   52 (166)
T cd03223          24 IKPGDRLLITGPSGTGKSSLFRALAGLWP   52 (166)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34688999999999999999998877543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=86.08  E-value=0.75  Score=47.02  Aligned_cols=28  Identities=32%  Similarity=0.579  Sum_probs=24.8

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ++..+.|+|+|++|+||+||.+.|...+
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~  243 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIF  243 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4667899999999999999999999864

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=86.07  E-value=0.77  Score=42.78  Aligned_cols=28  Identities=11%  Similarity=0.197  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250         26 FEGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999888754

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=86.03  E-value=0.74  Score=42.52  Aligned_cols=29  Identities=17%  Similarity=0.382  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   50 (232)
T PRK10771         22 VERGERVAILGPSGAGKSTLLNLIAGFLT   50 (232)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34688999999999999999998877543

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=85.99  E-value=0.78  Score=42.50  Aligned_cols=28  Identities=18%  Similarity=0.317  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus         9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   36 (230)
T TIGR01184         9 QQGEFISLIGHSGCGKSTLLNLISGLAQ   36 (230)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4578999999999999999998877543

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK14529 adenylate kinase; Provisional

Probab=85.99  E-value=0.64  Score=43.93  Aligned_cols=22  Identities=18%  Similarity=0.536  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+||+||||+|+.++|...+
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~   24 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKY   24 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7889999999999999998864

>cd04163 Era Era subfamily

Probab=85.97  E-value=0.68  Score=38.37  Aligned_cols=23  Identities=22%  Similarity=0.505  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..|+|+|++|+||+|+.+++...
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46889999999999999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=85.96  E-value=0.85  Score=40.41  Aligned_cols=28  Identities=21%  Similarity=0.423  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||+|+||+|+.+.|....+
T Consensus        26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          26 KQGEKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678999999999999999999887644

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK04182 cytidylate kinase; Provisional

Probab=85.96  E-value=0.81  Score=39.75  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|+|++||||+|+.+.|++..
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l   24 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998764

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=85.92  E-value=0.76  Score=41.38  Aligned_cols=26  Identities=19%  Similarity=0.394  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+||||+||+|+.+.|...
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          31 KPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999988754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=85.79  E-value=0.82  Score=42.55  Aligned_cols=27  Identities=11%  Similarity=0.204  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         27 KPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999887654

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=85.78  E-value=0.72  Score=46.60  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ..+-.+.|+|||||||+|+-+.++-
T Consensus        29 ~~Gef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842          29 KKGEFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhC
Confidence            4567899999999999999988866

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=85.77  E-value=0.83  Score=42.01  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||+|+||+|+.+.|....+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (234)
T cd03251          26 PAGETVALVGPSGSGKSTLVNLIPRFYD   53 (234)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4678999999999999999998877643

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=85.74  E-value=0.63  Score=40.07  Aligned_cols=20  Identities=25%  Similarity=0.606  Sum_probs=18.2

Q ss_pred             EEcCCCCChhHHHHHHHhhC
Q psy12793        193 LLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       193 L~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+||+||||+|+..+|...+
T Consensus         1 i~G~PgsGK~t~~~~la~~~   20 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRY   20 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhc
Confidence            68999999999999999874

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=85.71  E-value=1  Score=41.66  Aligned_cols=21  Identities=14%  Similarity=0.553  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCChhHHHHHHH
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      ..+.|+||||+||+|+.+.+.
T Consensus        26 ~i~~ivGpNGaGKSTll~~i~   46 (212)
T cd03274          26 SFSAIVGPNGSGKSNVIDSML   46 (212)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            578899999999999999875

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=85.71  E-value=0.74  Score=43.00  Aligned_cols=28  Identities=21%  Similarity=0.470  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (255)
T PRK11300         29 REQEIVSLIGPNGAGKTTVFNCLTGFYK   56 (255)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4678999999999999999998887643

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=85.70  E-value=0.83  Score=42.27  Aligned_cols=25  Identities=36%  Similarity=0.563  Sum_probs=21.3

Q ss_pred             cCCCCcEEEEEcCCCCChhHHHHHH
Q psy12793        184 PSFKRKTLVLLGAHGVGRRHIKNTL  208 (352)
Q Consensus       184 p~~~~r~iVL~GPsG~gk~tl~~~L  208 (352)
                      ....+-.+||+||||+||+++.+-|
T Consensus        24 ~~~~getlvllgpsgagkssllr~l   48 (242)
T COG4161          24 DCPEGETLVLLGPSGAGKSSLLRVL   48 (242)
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHH
Confidence            3456789999999999999998865

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=85.70  E-value=0.85  Score=41.33  Aligned_cols=28  Identities=14%  Similarity=0.217  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||+|+||+|+.+.|....+
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   52 (204)
T PRK13538         25 NAGELVQIEGPNGAGKTSLLRILAGLAR   52 (204)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999998887644

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=85.65  E-value=0.86  Score=41.71  Aligned_cols=28  Identities=18%  Similarity=0.395  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        31 VNAGECVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468899999999999999999887754

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=85.61  E-value=0.86  Score=41.97  Aligned_cols=29  Identities=21%  Similarity=0.360  Sum_probs=24.8

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||+|+||+|+.+.|....+
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   52 (236)
T cd03253          24 IPAGKKVAIVGPSGSGKSTILRLLFRFYD   52 (236)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            34688999999999999999999987543

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=85.58  E-value=0.94  Score=39.96  Aligned_cols=29  Identities=14%  Similarity=0.367  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||+|+||+|+.+.+....+
T Consensus        25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence            34688999999999999999998887644

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=85.57  E-value=0.77  Score=44.30  Aligned_cols=26  Identities=19%  Similarity=0.376  Sum_probs=22.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ...+-.+.|+||||+||+|+-+.++.
T Consensus        26 v~~GEfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          26 VEKGEFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhC
Confidence            45788999999999999999987765

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=85.54  E-value=0.95  Score=41.50  Aligned_cols=22  Identities=18%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             CcEEEEEcCCCCChhHHHHHHH
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      +..++|+||+|+||+|+.+.+.
T Consensus        28 ~~~~~i~G~NGsGKSTll~~i~   49 (213)
T cd03279          28 NGLFLICGPTGAGKSTILDAIT   49 (213)
T ss_pred             cCEEEEECCCCCCHHHHHHHhe
Confidence            5689999999999999998775

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=85.53  E-value=0.54  Score=48.67  Aligned_cols=25  Identities=28%  Similarity=0.557  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +..++|+||+||||+|+..+|+...
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4568889999999999999998753

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=85.50  E-value=0.92  Score=41.06  Aligned_cols=28  Identities=14%  Similarity=0.284  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||+|+||+|+.+.|....+
T Consensus        32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   59 (207)
T cd03369          32 KAGEKIGIVGRTGAGKSTLILALFRFLE   59 (207)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4678999999999999999998877543

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd04129 Rho2 Rho2 subfamily

Probab=85.50  E-value=0.83  Score=40.52  Aligned_cols=25  Identities=24%  Similarity=0.599  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHh-hCCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLIN-KFPD  214 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~-~~p~  214 (352)
                      -|+|+|++|+||+++.+++.. .++.
T Consensus         3 Ki~ivG~~g~GKStLl~~l~~~~~~~   28 (187)
T cd04129           3 KLVIVGDGACGKTSLLSVFTLGEFPE   28 (187)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCc
Confidence            478899999999999999973 4444

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=85.49  E-value=0.76  Score=37.34  Aligned_cols=23  Identities=26%  Similarity=0.547  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      -|+|+|.+||||+++.+++....
T Consensus         3 ki~~~G~~~~GKstl~~~l~~~~   25 (161)
T TIGR00231         3 KIVIVGDPNVGKSTLLNRLLGNK   25 (161)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37889999999999999998754

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=85.49  E-value=0.84  Score=40.69  Aligned_cols=28  Identities=18%  Similarity=0.285  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~   51 (182)
T cd03215          24 RAGEIVGIAGLVGNGQTELAEALFGLRP   51 (182)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999998877543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=85.48  E-value=0.77  Score=48.60  Aligned_cols=25  Identities=24%  Similarity=0.514  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..++|+|.||+|+||+|..+.|+++
T Consensus        44 ~~~iLlLtGP~G~GKtttv~~La~e   68 (519)
T PF03215_consen   44 PKRILLLTGPSGCGKTTTVKVLAKE   68 (519)
T ss_pred             CcceEEEECCCCCCHHHHHHHHHHH
Confidence            4579999999999999999988876

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=85.48  E-value=0.84  Score=42.18  Aligned_cols=28  Identities=18%  Similarity=0.396  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||+|+||+|+.+.++...
T Consensus        45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          45 VPRGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3568899999999999999999887753

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=85.44  E-value=0.81  Score=43.96  Aligned_cols=28  Identities=18%  Similarity=0.245  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   62 (289)
T PRK13645         35 KKNKVTCVIGTTGSGKSTMIQLTNGLII   62 (289)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999999987643

>smart00175 RAB Rab subfamily of small GTPases

Probab=85.41  E-value=0.75  Score=38.76  Aligned_cols=21  Identities=24%  Similarity=0.661  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+++|++||||+++.+++...
T Consensus         3 v~v~G~~~~GKTtli~~l~~~   23 (164)
T smart00175        3 IILIGDSGVGKSSLLSRFTDG   23 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            688999999999999999864

Rab GTPases are implicated in vesicle trafficking.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=85.41  E-value=0.87  Score=42.18  Aligned_cols=28  Identities=14%  Similarity=0.271  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|+...
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         24 IDQGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999888754

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=85.40  E-value=0.94  Score=42.61  Aligned_cols=28  Identities=18%  Similarity=0.283  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         35 IPENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3467899999999999999999988654

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=85.39  E-value=0.79  Score=43.41  Aligned_cols=28  Identities=25%  Similarity=0.334  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   62 (265)
T PRK10575         35 PAGKVTGLIGHNGSGKSTLLKMLGRHQP   62 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4678999999999999999998877543

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=85.33  E-value=0.92  Score=40.95  Aligned_cols=29  Identities=17%  Similarity=0.407  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||+|+||+|+.+.+....+
T Consensus        28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~~   56 (204)
T cd03250          28 VPKGELVAIVGPVGSGKSSLLSALLGELE   56 (204)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence            35688999999999999999998877543

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13948 shikimate kinase; Provisional

Probab=85.29  E-value=1.1  Score=40.80  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..++|+|+|..||||+|+...|.+..
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~l   34 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRAL   34 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            45789999999999999999998764

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=85.29  E-value=0.89  Score=42.46  Aligned_cols=27  Identities=19%  Similarity=0.381  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         28 PQNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999887754

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=85.26  E-value=0.86  Score=43.38  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         31 PGGSIAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999887754

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=85.26  E-value=0.89  Score=43.27  Aligned_cols=29  Identities=14%  Similarity=0.305  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~   75 (269)
T cd03294          47 VREGEIFVIMGLSGSGKSTLLRCINRLIE   75 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34688999999999999999999887543

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14526 adenylate kinase; Provisional

Probab=85.25  E-value=0.81  Score=42.61  Aligned_cols=22  Identities=41%  Similarity=0.694  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+||+||||+|+.+.|...+
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~   24 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNEL   24 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999988754

>TIGR00017 cmk cytidylate kinase

Probab=85.25  E-value=1  Score=42.11  Aligned_cols=25  Identities=16%  Similarity=0.421  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..|.|.||+|+||+|+.+.|.....
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~~~   27 (217)
T TIGR00017         3 MIIAIDGPSGAGKSTVAKAVAEKLG   27 (217)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688899999999999999987654

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>cd04171 SelB SelB subfamily

Probab=85.25  E-value=0.81  Score=38.47  Aligned_cols=23  Identities=13%  Similarity=0.101  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|+|.+||||+++.++|....
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~   24 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIE   24 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcc
Confidence            58899999999999999998643

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=85.25  E-value=0.89  Score=41.41  Aligned_cols=29  Identities=14%  Similarity=0.338  Sum_probs=24.9

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   49 (213)
T TIGR01277        21 VADGEIVAIMGPSGAGKSTLLNLIAGFIE   49 (213)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45688999999999999999999987644

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG4639 Predicted kinase [General function prediction only]

Probab=85.25  E-value=0.64  Score=42.23  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..++||+|++||||+|.....+.+
T Consensus         2 ~~LvvL~G~~~sGKsT~ak~n~~~   25 (168)
T COG4639           2 RILVVLRGASGSGKSTFAKENFLQ   25 (168)
T ss_pred             ceEEEEecCCCCchhHHHHHhCCC
Confidence            468999999999999988765443

>cd01862 Rab7 Rab7 subfamily

Probab=85.25  E-value=0.75  Score=39.21  Aligned_cols=21  Identities=38%  Similarity=0.825  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++.+++...
T Consensus         3 i~viG~~~~GKSsl~~~l~~~   23 (172)
T cd01862           3 VIILGDSGVGKTSLMNQYVNK   23 (172)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            788999999999999999874

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=85.24  E-value=0.82  Score=41.57  Aligned_cols=28  Identities=21%  Similarity=0.342  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          31 KPGEMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence            4678999999999999999998877543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=85.17  E-value=0.76  Score=41.26  Aligned_cols=24  Identities=33%  Similarity=0.569  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .-||++|+.||||+|+..+|+...
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~   29 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDE   29 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCc
Confidence            458889999999999999998754

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=85.13  E-value=0.91  Score=41.91  Aligned_cols=27  Identities=11%  Similarity=0.310  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          26 KPGEVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            468899999999999999999988754

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=85.13  E-value=0.9  Score=42.49  Aligned_cols=28  Identities=21%  Similarity=0.347  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005        23 VAAGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999887654

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=85.12  E-value=0.91  Score=43.09  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         32 IPKGQWTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3467899999999999999999887754

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=85.11  E-value=0.91  Score=39.97  Aligned_cols=29  Identities=28%  Similarity=0.501  Sum_probs=24.0

Q ss_pred             ccCCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        183 LPSFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       183 ~p~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ++.....-|+|+|++|+||+++.++|...
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~   41 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNR   41 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            44455667899999999999999999875

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=85.10  E-value=0.89  Score=43.05  Aligned_cols=26  Identities=19%  Similarity=0.345  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+||||+||+|+.+.|+..
T Consensus        45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   70 (268)
T PRK14248         45 EKHAVTALIGPSGCGKSTFLRSINRM   70 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhc
Confidence            46889999999999999999998764

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=85.09  E-value=0.7  Score=43.11  Aligned_cols=73  Identities=12%  Similarity=0.100  Sum_probs=39.6

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcc--hhhhhccCCCCCccccCChhHHHHHHHH
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHN--WWQARKDNVAGSAGLIPSPELQEWRTAC  268 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~--w~~~~~~~~~~~~g~~p~~~~~~~r~~~  268 (352)
                      |-|+|||||||+|+.+.|........          .+..+.|++-++-.  .++.+..|.....|+..+=.++...+..
T Consensus         2 igI~G~sGSGKTTla~~L~~~l~~~~----------~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L   71 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQALLSRWP----------DHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFL   71 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHHHhhcC----------CCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHH
Confidence            55789999999999999987642100          01123445555443  2333334433334554444455555555


Q ss_pred             hhhcc
Q psy12793        269 STIDK  273 (352)
Q Consensus       269 ~~~~~  273 (352)
                      ..+..
T Consensus        72 ~~l~~   76 (220)
T cd02025          72 KDIKS   76 (220)
T ss_pred             HHHHC
Confidence            55443

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=85.09  E-value=0.9  Score=43.23  Aligned_cols=27  Identities=15%  Similarity=0.225  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         36 PAGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999888754

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=85.03  E-value=1.1  Score=38.73  Aligned_cols=23  Identities=22%  Similarity=0.512  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|.|++||||+|+.+.|.+..
T Consensus         2 iI~i~G~~GSGKstia~~la~~l   24 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            58889999999999999998763

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=85.03  E-value=1  Score=41.98  Aligned_cols=29  Identities=21%  Similarity=0.285  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (249)
T PRK14253         26 IPARQVTALIGPSGCGKSTLLRCLNRMND   54 (249)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            34688999999999999999999987543

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=85.02  E-value=0.95  Score=42.20  Aligned_cols=27  Identities=15%  Similarity=0.281  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         27 PDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999888754

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=85.00  E-value=0.79  Score=39.24  Aligned_cols=20  Identities=30%  Similarity=0.664  Sum_probs=18.1

Q ss_pred             EEEEcCCCCChhHHHHHHHh
Q psy12793        191 LVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~  210 (352)
                      |+|+|++||||+++..+++.
T Consensus         2 i~vvG~~~~GKtsli~~~~~   21 (165)
T cd04146           2 IAVLGASGVGKSALVVRFLT   21 (165)
T ss_pred             EEEECCCCCcHHHHHHHHHh
Confidence            78899999999999988875

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=85.00  E-value=0.93  Score=42.43  Aligned_cols=28  Identities=25%  Similarity=0.367  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+|+||+||+|+.+.|....+
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (254)
T PRK14273         31 LKNSITALIGPSGCGKSTFLRTLNRMND   58 (254)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4678999999999999999999877543

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=85.00  E-value=0.94  Score=41.42  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.+....+
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   62 (214)
T PRK13543         35 DAGEALLVQGDNGAGKTTLLRVLAGLLH   62 (214)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999998877543

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=84.98  E-value=0.78  Score=38.78  Aligned_cols=22  Identities=23%  Similarity=0.378  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+|++||||+++.+++....
T Consensus         2 i~i~G~~~~GKTsl~~~~~~~~   23 (160)
T cd04156           2 VLLLGLDSAGKSTLLYKLKHAE   23 (160)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCC
Confidence            6889999999999999998653

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04123 Rab21 Rab21 subfamily

Probab=84.98  E-value=0.84  Score=38.20  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+++|++||||+++.++++..
T Consensus         3 i~i~G~~~~GKStli~~l~~~   23 (162)
T cd04123           3 VVLLGEGRVGKTSLVLRYVEN   23 (162)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678999999999999999874

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=84.98  E-value=0.99  Score=41.36  Aligned_cols=28  Identities=21%  Similarity=0.379  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   65 (226)
T cd03248          38 HPGEVTALVGPSGSGKSTVVALLENFYQ   65 (226)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4678999999999999999998877543

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=84.97  E-value=0.88  Score=41.81  Aligned_cols=24  Identities=17%  Similarity=0.349  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +|.|.|++||||+|+.+.|.+..+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~   24 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP   24 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC
Confidence            367889999999999999998753

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=84.97  E-value=0.79  Score=39.18  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++..+++..
T Consensus         5 i~i~G~~~vGKSsli~~~~~~   25 (166)
T cd01869           5 LLLIGDSGVGKSCLLLRFADD   25 (166)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            778899999999999999864

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=84.96  E-value=0.99  Score=41.13  Aligned_cols=27  Identities=15%  Similarity=0.265  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||+|+||+|+.+.|....
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          28 KPGEKVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            467899999999999999999887654

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=84.94  E-value=0.94  Score=43.09  Aligned_cols=29  Identities=21%  Similarity=0.370  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   60 (271)
T PRK13632         32 INEGEYVAILGHNGSGKSTISKILTGLLK   60 (271)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34678999999999999999998877543

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=84.92  E-value=0.97  Score=42.13  Aligned_cols=28  Identities=21%  Similarity=0.318  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+|+||+||+|+.+.|....
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        24 IPKNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3468899999999999999999988654

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=84.86  E-value=0.92  Score=42.64  Aligned_cols=27  Identities=22%  Similarity=0.525  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         30 YPGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999999988754

>cd00157 Rho Rho (Ras homology) family

Probab=84.85  E-value=0.84  Score=38.84  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+++|++||||+++.++|....
T Consensus         3 i~i~G~~~~GKSsli~~l~~~~   24 (171)
T cd00157           3 IVVVGDGAVGKTCLLISYTTGK   24 (171)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6889999999999999998753

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=84.83  E-value=0.96  Score=38.41  Aligned_cols=20  Identities=15%  Similarity=0.330  Sum_probs=18.4

Q ss_pred             EEEEcCCCCChhHHHHHHHh
Q psy12793        191 LVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~  210 (352)
                      |+++|++||||+++..++..
T Consensus         3 i~vvG~~~~GKtsl~~~l~~   22 (164)
T cd04101           3 CAVVGDPAVGKTAFVQMFHS   22 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68899999999999999975

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=84.79  E-value=0.87  Score=45.12  Aligned_cols=28  Identities=32%  Similarity=0.553  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +...+.|+|+|++|+||+||.+.|....
T Consensus       159 ~~~~~~~~~~G~~~~gkstl~~~l~~~~  186 (325)
T TIGR01526       159 PFFVKTVAILGGESTGKSTLVNKLAAVF  186 (325)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            4446789999999999999999999863

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=84.74  E-value=1.1  Score=39.88  Aligned_cols=27  Identities=30%  Similarity=0.466  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+.+|+|.|++|+||+|+.+.|....
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l   42 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKL   42 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999988764

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=84.73  E-value=1.3  Score=39.90  Aligned_cols=25  Identities=12%  Similarity=0.238  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..++|+|++||||+++...++....
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~   26 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSG   26 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcC
Confidence            3688899999999999999988754

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=84.72  E-value=0.96  Score=41.88  Aligned_cols=28  Identities=18%  Similarity=0.360  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        25 VDPGELRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999988754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=84.70  E-value=0.9  Score=43.17  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         25 SLSPVTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            467899999999999999999887654

>cd04136 Rap_like Rap-like subfamily

Probab=84.65  E-value=0.88  Score=38.40  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      -|+|+|++||||+++..+++..
T Consensus         3 ki~i~G~~~vGKTsl~~~~~~~   24 (163)
T cd04136           3 KVVVLGSGGVGKSALTVQFVQG   24 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3788999999999999998863

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=84.59  E-value=0.93  Score=41.15  Aligned_cols=23  Identities=13%  Similarity=0.222  Sum_probs=20.8

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      .+..++|+||+|+||+|+.+.+.
T Consensus        28 ~~~~~~l~G~Ng~GKStll~~i~   50 (202)
T cd03243          28 SGRLLLITGPNMGGKSTYLRSIG   50 (202)
T ss_pred             CCeEEEEECCCCCccHHHHHHHH
Confidence            45899999999999999999887

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=84.59  E-value=0.88  Score=43.08  Aligned_cols=28  Identities=18%  Similarity=0.330  Sum_probs=24.4

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   58 (265)
T PRK10253         31 PDGHFTAIIGPNGCGKSTLLRTLSRLMT   58 (265)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4688999999999999999998887654

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=84.57  E-value=0.96  Score=42.07  Aligned_cols=27  Identities=19%  Similarity=0.320  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|+...
T Consensus        45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~   71 (236)
T cd03267          45 EKGEIVGFIGPNGAGKTTTLKILSGLL   71 (236)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            467899999999999999999988754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=84.57  E-value=0.96  Score=43.87  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        28 ARGECFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999987754

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=84.56  E-value=1  Score=41.66  Aligned_cols=28  Identities=25%  Similarity=0.413  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.+....+
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   54 (238)
T cd03249          27 PPGKTVALVGSSGCGKSTVVSLLERFYD   54 (238)
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            4678999999999999999998887643

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=84.55  E-value=0.96  Score=42.72  Aligned_cols=28  Identities=18%  Similarity=0.436  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   53 (258)
T PRK13548         26 RPGEVVAILGPNGAGKSTLLRALSGELS   53 (258)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999999887543

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=84.53  E-value=1  Score=41.21  Aligned_cols=29  Identities=21%  Similarity=0.342  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~   51 (223)
T TIGR03740        23 VPKNSVYGLLGPNGAGKSTLLKMITGILR   51 (223)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35688999999999999999998887543

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=84.52  E-value=0.97  Score=42.99  Aligned_cols=27  Identities=26%  Similarity=0.415  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..++|+||||+||+|+.+.|....
T Consensus        36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   62 (268)
T PRK10419         36 KSGETVALLGRSGCGKSTLARLLVGLE   62 (268)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999887654

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=84.52  E-value=0.52  Score=48.40  Aligned_cols=80  Identities=15%  Similarity=0.183  Sum_probs=52.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHH
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  265 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r  265 (352)
                      ..++.|+|+||.||||+|=..+|+..+-  ..+...++-+..+|.++|=+.++..|. |+.=| .+.-...++++|++.=
T Consensus       201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~--~~~~~~kVaiITtDtYRIGA~EQLk~Y-a~im~-vp~~vv~~~~el~~ai  276 (407)
T COG1419         201 EQKRVIALVGPTGVGKTTTLAKLAARYV--MLKKKKKVAIITTDTYRIGAVEQLKTY-ADIMG-VPLEVVYSPKELAEAI  276 (407)
T ss_pred             ccCcEEEEECCCCCcHHHHHHHHHHHHH--hhccCcceEEEEeccchhhHHHHHHHH-HHHhC-CceEEecCHHHHHHHH
Confidence            3489999999999999998889987643  123344446778888888777777666 11111 2333455666666554


Q ss_pred             HHHh
Q psy12793        266 TACS  269 (352)
Q Consensus       266 ~~~~  269 (352)
                      ..+.
T Consensus       277 ~~l~  280 (407)
T COG1419         277 EALR  280 (407)
T ss_pred             HHhh
Confidence            4443

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=84.51  E-value=0.97  Score=42.92  Aligned_cols=29  Identities=21%  Similarity=0.416  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        36 i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~   64 (267)
T PRK15112         36 LREGQTLAIIGENGSGKSTLAKMLAGMIE   64 (267)
T ss_pred             ecCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence            34678999999999999999999877543

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=84.51  E-value=1.1  Score=40.88  Aligned_cols=25  Identities=28%  Similarity=0.538  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+.|||+|+.|+||+|+-+.|++.-
T Consensus         2 ~~~IvLiG~mGaGKSTIGr~LAk~L   26 (172)
T COG0703           2 NMNIVLIGFMGAGKSTIGRALAKAL   26 (172)
T ss_pred             CccEEEEcCCCCCHhHHHHHHHHHc
Confidence            4679999999999999999998753

>cd01865 Rab3 Rab3 subfamily

Probab=84.51  E-value=0.9  Score=39.07  Aligned_cols=22  Identities=18%  Similarity=0.379  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+|++||||++|.+++....
T Consensus         4 i~i~G~~~~GKSsli~~l~~~~   25 (165)
T cd01865           4 LLIIGNSSVGKTSFLFRYADDS   25 (165)
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            7889999999999999998753

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01860 Rab5_related Rab5-related subfamily

Probab=84.51  E-value=0.87  Score=38.53  Aligned_cols=22  Identities=32%  Similarity=0.529  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+++|++||||+++.++|....
T Consensus         4 i~v~G~~~~GKSsli~~l~~~~   25 (163)
T cd01860           4 LVLLGDSSVGKSSLVLRFVKNE   25 (163)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6889999999999999998753

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=84.49  E-value=0.99  Score=42.08  Aligned_cols=26  Identities=23%  Similarity=0.368  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+||||+||+|+.+.|...
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~   52 (250)
T PRK14240         27 EENQVTALIGPSGCGKSTFLRTLNRM   52 (250)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999998764

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=84.48  E-value=0.95  Score=42.65  Aligned_cols=27  Identities=19%  Similarity=0.434  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         37 AKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            467899999999999999999987654

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=84.47  E-value=1.1  Score=40.82  Aligned_cols=24  Identities=17%  Similarity=0.339  Sum_probs=20.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .+ .++|+||||+||+|+.+.+.--
T Consensus        22 ~g-~~~i~G~nGsGKStll~al~~l   45 (197)
T cd03278          22 PG-LTAIVGPNGSGKSNIIDAIRWV   45 (197)
T ss_pred             CC-cEEEECCCCCCHHHHHHHHHHH
Confidence            35 8899999999999999988643

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd01870 RhoA_like RhoA-like subfamily

Probab=84.44  E-value=0.98  Score=38.88  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +-|+|+|++||||+++..++...
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~   24 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKD   24 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999999873

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=84.43  E-value=0.99  Score=42.91  Aligned_cols=29  Identities=14%  Similarity=0.350  Sum_probs=24.6

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (269)
T PRK11831         30 VPRGKITAIMGPSGIGKTTLLRLIGGQIA   58 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34678999999999999999998887643

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=84.42  E-value=0.96  Score=41.14  Aligned_cols=26  Identities=15%  Similarity=0.267  Sum_probs=22.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .. ..+.|+||||+||+|+.+.|....
T Consensus        22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~   47 (214)
T cd03297          22 NE-EVTGIFGASGAGKSTLLRCIAGLE   47 (214)
T ss_pred             cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence            45 789999999999999999887654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=84.40  E-value=1  Score=42.06  Aligned_cols=28  Identities=18%  Similarity=0.411  Sum_probs=23.8

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262         26 IFKNQITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3467899999999999999999888643

>PRK12289 GTPase RsgA; Reviewed

Probab=84.40  E-value=0.77  Score=46.20  Aligned_cols=24  Identities=38%  Similarity=0.599  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+++|+|+|||||+||.+.|+..
T Consensus       172 ~ki~v~iG~SgVGKSSLIN~L~~~  195 (352)
T PRK12289        172 NKITVVAGPSGVGKSSLINRLIPD  195 (352)
T ss_pred             cceEEEEeCCCCCHHHHHHHHcCc
Confidence            457899999999999999999854

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=84.38  E-value=0.99  Score=42.06  Aligned_cols=26  Identities=15%  Similarity=0.431  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+||||+||+|+.+.|...
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         29 YPNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999988754

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=84.36  E-value=1  Score=45.85  Aligned_cols=27  Identities=22%  Similarity=0.434  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..++|+||+||||+|+..+|....
T Consensus       135 ~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        135 ERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356799999999999999999998753

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=84.33  E-value=1  Score=43.30  Aligned_cols=28  Identities=21%  Similarity=0.418  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~   52 (272)
T PRK13547         25 EPGRVTALLGRNGAGKSTLLKALAGDLT   52 (272)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4678999999999999999998877543

>cd04127 Rab27A Rab27a subfamily

Probab=84.31  E-value=0.86  Score=39.49  Aligned_cols=20  Identities=25%  Similarity=0.512  Sum_probs=18.5

Q ss_pred             EEEEcCCCCChhHHHHHHHh
Q psy12793        191 LVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~  210 (352)
                      |+|+|++||||+++..++..
T Consensus         7 i~ivG~~~vGKTsli~~~~~   26 (180)
T cd04127           7 FLALGDSGVGKTSFLYQYTD   26 (180)
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68899999999999999976

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=84.31  E-value=1  Score=42.65  Aligned_cols=27  Identities=26%  Similarity=0.375  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T TIGR02769        35 EEGETVGLLGRSGCGKSTLARLLLGLE   61 (265)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            468899999999999999999887754

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=84.27  E-value=1  Score=42.14  Aligned_cols=26  Identities=19%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+||||+||+|+.+.|...
T Consensus        30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14261         30 PKNRVTALIGPSGCGKSTLLRCFNRM   55 (253)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999988753

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=84.26  E-value=0.91  Score=39.32  Aligned_cols=85  Identities=7%  Similarity=0.164  Sum_probs=44.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh-CCCCcccccccc----cc---ccceeEEEeecCCcchhhh--hccCCCCCccc----
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK-FPDKYAYPVPQF----IT---VCSVMFQIISKDDHNWWQA--RKDNVAGSAGL----  255 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~-~p~~F~~~v~~~----~~---~~~~~~~vl~k~~~~w~~~--~~~~~~~~~g~----  255 (352)
                      -|+++|++||||+++.++++.. ++..+...+..+    .+   .+.-.++|++-...+.+..  ...-....-++    
T Consensus         4 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~   83 (170)
T cd04115           4 KIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVY   83 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEE
Confidence            4788999999999999999763 233222222111    11   1223566776555444321  11111222222    


Q ss_pred             --cCChhHHHHHHHHhhhccc
Q psy12793        256 --IPSPELQEWRTACSTIDKT  274 (352)
Q Consensus       256 --~p~~~~~~~r~~~~~~~~~  274 (352)
                        --..+|+..+.....+.+.
T Consensus        84 d~~~~~s~~~~~~~~~~~~~~  104 (170)
T cd04115          84 DVTNMASFHSLPSWIEECEQH  104 (170)
T ss_pred             ECCCHHHHHhHHHHHHHHHHh
Confidence              2346777777766666543

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=84.16  E-value=1  Score=43.55  Aligned_cols=26  Identities=27%  Similarity=0.554  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .++.|+|+||+||||+|...+|+...
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~  218 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARF  218 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45688999999999999999998754

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=84.13  E-value=0.97  Score=43.35  Aligned_cols=27  Identities=22%  Similarity=0.594  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCCCc
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFPDKY  216 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p~~F  216 (352)
                      -+||+|++||||+++...|+...+..|
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~~~f   41 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLRHKF   41 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcccC
Confidence            467789999999999999988776665

This is thought to be an ATPase involved in viral DNA packaging [].

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=84.12  E-value=1.1  Score=41.48  Aligned_cols=28  Identities=18%  Similarity=0.275  Sum_probs=24.4

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+|+||+||+|+.+.|....+
T Consensus        24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~   51 (232)
T cd03300          24 KEGEFFTLLGPSGCGKTTLLRLIAGFET   51 (232)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4688999999999999999999987644

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=84.12  E-value=0.94  Score=39.02  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      -|+|+|++||||+++.+++...
T Consensus         5 ki~vvG~~~~GKSsl~~~~~~~   26 (167)
T cd01867           5 KLLLIGDSGVGKSCLLLRFSED   26 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHhhC
Confidence            4788999999999999999864

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=84.09  E-value=1.1  Score=42.33  Aligned_cols=27  Identities=22%  Similarity=0.412  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (262)
T PRK09984         28 HHGEMVALLGPSGSGKSTLLRHLSGLI   54 (262)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999888754

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=84.08  E-value=0.93  Score=39.42  Aligned_cols=21  Identities=24%  Similarity=0.627  Sum_probs=19.4

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++..++...
T Consensus         2 i~ivG~~~vGKTsli~~~~~~   22 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSE   22 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999875

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=84.08  E-value=1.1  Score=41.33  Aligned_cols=27  Identities=26%  Similarity=0.450  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+|+||+||+|+.+.|....
T Consensus         4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         4 DKGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            357889999999999999999988754

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK08084 DNA replication initiation factor; Provisional

Probab=84.03  E-value=1.1  Score=42.09  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .+.++|.||+|+||+++...+...
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~   68 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAE   68 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999877653

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=84.03  E-value=1.1  Score=42.76  Aligned_cols=29  Identities=21%  Similarity=0.302  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   64 (269)
T PRK14259         36 IPRGKVTALIGPSGCGKSTVLRSLNRMND   64 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            35688999999999999999999887543

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=84.02  E-value=1.1  Score=41.92  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+|+||+||+|+.+.|...
T Consensus        29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         29 NQNEITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999998764

>cd01861 Rab6 Rab6 subfamily

Probab=84.01  E-value=0.96  Score=38.19  Aligned_cols=22  Identities=32%  Similarity=0.564  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+|++||||+++.++++...
T Consensus         3 i~liG~~~~GKSsli~~l~~~~   24 (161)
T cd01861           3 LVFLGDQSVGKTSIITRFMYDT   24 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            7889999999999999998653

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=84.01  E-value=1.1  Score=43.91  Aligned_cols=30  Identities=23%  Similarity=0.615  Sum_probs=25.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPDK  215 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~  215 (352)
                      ..+..++|+||+||||+|+.+.|+...|..
T Consensus       142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~  171 (308)
T TIGR02788       142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKD  171 (308)
T ss_pred             hCCCEEEEECCCCCCHHHHHHHHHccCCcc
Confidence            357899999999999999999998877653

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd01864 Rab19 Rab19 subfamily

Probab=83.99  E-value=0.94  Score=38.76  Aligned_cols=22  Identities=18%  Similarity=0.454  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCChhHHHHHHHh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      .-|+|+|++||||+++..++..
T Consensus         4 ~kv~vvG~~~~GKTsli~~l~~   25 (165)
T cd01864           4 FKIILIGDSNVGKTCVVQRFKS   25 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhh
Confidence            4578899999999999999875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=83.98  E-value=1.2  Score=42.28  Aligned_cols=28  Identities=14%  Similarity=0.237  Sum_probs=24.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   69 (267)
T PRK14235         42 IPEKTVTAFIGPSGCGKSTFLRCLNRMN   69 (267)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3467899999999999999999988754

>cd00154 Rab Rab family

Probab=83.97  E-value=1.1  Score=36.94  Aligned_cols=22  Identities=27%  Similarity=0.582  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+++|++||||+++.+++....
T Consensus         3 i~~~G~~~~GKStl~~~l~~~~   24 (159)
T cd00154           3 IVLIGDSGVGKTSLLLRFVDGK   24 (159)
T ss_pred             EEEECCCCCCHHHHHHHHHhCc
Confidence            6789999999999999997753

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=83.96  E-value=1.1  Score=42.10  Aligned_cols=29  Identities=21%  Similarity=0.412  Sum_probs=24.4

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   54 (254)
T PRK10418         26 LQRGRVLALVGGSGSGKSLTCAAALGILP   54 (254)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34678999999999999999998877543

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=83.96  E-value=1.1  Score=41.81  Aligned_cols=28  Identities=18%  Similarity=0.328  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14249         28 PERQITAIIGPSGCGKSTLLRALNRMND   55 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            4678999999999999999999887643

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=83.94  E-value=1.1  Score=42.25  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         28 EPRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999988754

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=83.92  E-value=1  Score=42.88  Aligned_cols=28  Identities=18%  Similarity=0.203  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         30 IEDGSYTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999887754

>cd04154 Arl2 Arl2 subfamily

Probab=83.88  E-value=1  Score=39.04  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .-|+|+|++||||+++.+++....
T Consensus        15 ~kv~ivG~~~~GKTsL~~~l~~~~   38 (173)
T cd04154          15 MRILILGLDNAGKTTILKKLLGED   38 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHccCC
Confidence            357889999999999999998753

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=83.88  E-value=1.1  Score=43.50  Aligned_cols=27  Identities=19%  Similarity=0.338  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~   43 (302)
T TIGR01188        17 REGEVFGFLGPNGAGKTTTIRMLTTLL   43 (302)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999888753

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=83.88  E-value=1.1  Score=40.57  Aligned_cols=26  Identities=23%  Similarity=0.509  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+|+||+||+|+.+.+...
T Consensus        24 ~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          24 KKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999988765

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK12288 GTPase RsgA; Reviewed

Probab=83.83  E-value=0.72  Score=46.26  Aligned_cols=24  Identities=25%  Similarity=0.600  Sum_probs=21.3

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++++|+|+|||||+||.+.|+..
T Consensus       205 ~ki~~~vG~sgVGKSTLiN~Ll~~  228 (347)
T PRK12288        205 GRISIFVGQSGVGKSSLINALLPE  228 (347)
T ss_pred             hCCEEEECCCCCCHHHHHHHhccc
Confidence            467899999999999999999854

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=83.80  E-value=1.2  Score=40.72  Aligned_cols=27  Identities=11%  Similarity=0.340  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.+....
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          25 PTGQLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999887654

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>KOG0744|consensus

Probab=83.78  E-value=1.3  Score=44.93  Aligned_cols=70  Identities=16%  Similarity=0.276  Sum_probs=43.9

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCC-cchhhhhccCCCCCccccCChhHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDD-HNWWQARKDNVAGSAGLIPSPELQEWR  265 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~-~~w~~~~~~~~~~~~g~~p~~~~~~~r  265 (352)
                      ..|+|.|.||+|.||+++.+.|+++-.-+     .++...+|++|.|=+-.= .-|+        +-+|=+=++-||.+-
T Consensus       176 ~NRliLlhGPPGTGKTSLCKaLaQkLSIR-----~~~~y~~~~liEinshsLFSKWF--------sESgKlV~kmF~kI~  242 (423)
T KOG0744|consen  176 WNRLILLHGPPGTGKTSLCKALAQKLSIR-----TNDRYYKGQLIEINSHSLFSKWF--------SESGKLVAKMFQKIQ  242 (423)
T ss_pred             eeeEEEEeCCCCCChhHHHHHHHHhheee-----ecCccccceEEEEehhHHHHHHH--------hhhhhHHHHHHHHHH
Confidence            45899999999999999999998863221     122344566666532221 2366        344555566677766


Q ss_pred             HHHh
Q psy12793        266 TACS  269 (352)
Q Consensus       266 ~~~~  269 (352)
                      ++.+
T Consensus       243 ELv~  246 (423)
T KOG0744|consen  243 ELVE  246 (423)
T ss_pred             HHHh
Confidence            6543

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=83.77  E-value=1  Score=41.85  Aligned_cols=26  Identities=19%  Similarity=0.438  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+||||+||+|+.+.|...
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         25 RPGEVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            46789999999999999999988775

>cd04114 Rab30 Rab30 subfamily

Probab=83.75  E-value=1  Score=38.46  Aligned_cols=22  Identities=27%  Similarity=0.552  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCChhHHHHHHHh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      .-|+|+|++||||+++.+++..
T Consensus         8 ~~v~v~G~~~~GKSsli~~l~~   29 (169)
T cd04114           8 FKIVLIGNAGVGKTCLVRRFTQ   29 (169)
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4588899999999999999985

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=83.71  E-value=1.1  Score=42.04  Aligned_cols=28  Identities=18%  Similarity=0.353  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+|+||+||+|+.+.|....+
T Consensus        26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   53 (255)
T PRK11231         26 PTGKITALIGPNGCGKSTLLKCFARLLT   53 (255)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4678999999999999999999887543

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=83.70  E-value=1.1  Score=41.98  Aligned_cols=29  Identities=10%  Similarity=0.179  Sum_probs=25.0

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+|+||+||+|+.+.+....+
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   56 (257)
T PRK10619         28 ANAGDVISIIGSSGSGKSTFLRCINFLEK   56 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            35788999999999999999998887654

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=83.70  E-value=1  Score=45.60  Aligned_cols=26  Identities=27%  Similarity=0.483  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+|+++|+||.|+||+|+..+|.+.
T Consensus        86 ~~krIl~L~GPvg~GKSsl~~~Lk~~  111 (358)
T PF08298_consen   86 ERKRILLLLGPVGGGKSSLAELLKRG  111 (358)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            35789999999999999999988764

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=83.68  E-value=1.1  Score=38.92  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|.++|+++|||+|+...|++..
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l   24 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINEL   24 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            46788999999999999998853

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=83.58  E-value=1  Score=42.23  Aligned_cols=28  Identities=21%  Similarity=0.447  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....|
T Consensus        20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~~   47 (248)
T PRK03695         20 RAGEILHLVGPNGAGKSTLLARMAGLLP   47 (248)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4678999999999999999998876554

>cd04124 RabL2 RabL2 subfamily

Probab=83.57  E-value=1  Score=38.68  Aligned_cols=21  Identities=24%  Similarity=0.612  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|.+||||+++.++++..
T Consensus         3 i~vvG~~~vGKTsli~~~~~~   23 (161)
T cd04124           3 IILLGDSAVGKSKLVERFLMD   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            688999999999999998763

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=83.57  E-value=1.2  Score=41.66  Aligned_cols=27  Identities=11%  Similarity=0.321  Sum_probs=24.0

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+|+||+||+|+.+.|....
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         28 PENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            467899999999999999999998764

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=83.55  E-value=0.94  Score=40.64  Aligned_cols=21  Identities=24%  Similarity=0.591  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |||+|++||||+++.++++..
T Consensus         3 ivivG~~~vGKTsli~~l~~~   23 (201)
T cd04107           3 VLVIGDLGVGKTSIIKRYVHG   23 (201)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999864

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=83.51  E-value=1.2  Score=40.35  Aligned_cols=27  Identities=19%  Similarity=0.369  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||+|+||+|+.+.|+...
T Consensus        33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          33 KPGELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999988765

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=83.46  E-value=1.3  Score=42.13  Aligned_cols=28  Identities=25%  Similarity=0.265  Sum_probs=24.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         43 FEKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3468899999999999999999888754

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=83.43  E-value=1  Score=41.57  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (237)
T PRK11614         29 NQGEIVTLIGANGAGKTTLLGTLCGDP   55 (237)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            467899999999999999999887654

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=83.42  E-value=1.2  Score=42.66  Aligned_cols=28  Identities=21%  Similarity=0.325  Sum_probs=24.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (274)
T PRK13647         28 IPEGSKTALLGPNGAGKSTLLLHLNGIY   55 (274)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3468899999999999999999998754

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=83.41  E-value=1.2  Score=42.15  Aligned_cols=28  Identities=25%  Similarity=0.425  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.+....
T Consensus        27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         27 LKPGKILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3568899999999999999999887653

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=83.40  E-value=1.1  Score=46.61  Aligned_cols=27  Identities=19%  Similarity=0.326  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .++..+.|+||||+||+|+.+.|....
T Consensus       359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       359 PPGERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            468899999999999999999887654

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK06893 DNA replication initiation factor; Validated

Probab=83.38  E-value=1.1  Score=41.68  Aligned_cols=23  Identities=17%  Similarity=0.420  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +.++|.||+|+||+++...+.++
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~   62 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNH   62 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            56899999999999999988764

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=83.36  E-value=1.2  Score=36.91  Aligned_cols=22  Identities=27%  Similarity=0.593  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      -|+|+|++|+||+++.+++...
T Consensus         3 ~i~l~G~~~~GKstli~~l~~~   24 (157)
T cd04164           3 KVVIVGKPNVGKSSLLNALAGR   24 (157)
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5789999999999999999764

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=83.34  E-value=1  Score=41.91  Aligned_cols=26  Identities=15%  Similarity=0.420  Sum_probs=22.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+|+||+||+|+.+.|...
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         31 NKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            46789999999999999999987763

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=83.34  E-value=1  Score=37.53  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ++|.|++|+||+++...++...
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~   23 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNI   23 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHH
Confidence            6789999999999999887754

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=83.28  E-value=1.2  Score=42.14  Aligned_cols=26  Identities=19%  Similarity=0.414  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...|||.|+-|+||+||.++|.+...
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~   29 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLG   29 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhC
Confidence            46799999999999999999998755

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=83.27  E-value=1.2  Score=42.88  Aligned_cols=28  Identities=14%  Similarity=0.287  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~   58 (286)
T PRK13646         31 EQGKYYAIVGQTGSGKSTLIQNINALLK   58 (286)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4678999999999999999999887543

>cd04157 Arl6 Arl6 subfamily

Probab=83.26  E-value=0.93  Score=38.22  Aligned_cols=21  Identities=24%  Similarity=0.479  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++..++...
T Consensus         2 i~~vG~~~~GKTsl~~~l~~~   22 (162)
T cd04157           2 ILVVGLDNSGKTTIINQLKPE   22 (162)
T ss_pred             EEEECCCCCCHHHHHHHHccc
Confidence            688999999999999999874

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=83.26  E-value=1.1  Score=40.85  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+.|+|+|+.|+||+|+.++++....
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~   47 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK   47 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3567889999999999999999988643

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=83.25  E-value=1.1  Score=37.99  Aligned_cols=22  Identities=9%  Similarity=0.326  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .|+|+|.+||||+++.++|...
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~   23 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKT   23 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhc
Confidence            5889999999999999999864

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=83.15  E-value=1.2  Score=41.58  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+||||+||+|+.+.+...
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (246)
T PRK14269         26 EQNKITALIGASGCGKSTFLRCFNRM   51 (246)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999988765

>PRK00625 shikimate kinase; Provisional

Probab=83.15  E-value=1.2  Score=40.13  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|+|.+||||+|+.+.|.+..
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l   24 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFL   24 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998763

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=83.11  E-value=1.1  Score=38.96  Aligned_cols=21  Identities=29%  Similarity=0.536  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+++|++||||+++.++++..
T Consensus         3 i~vvG~~~vGKTsli~~~~~~   23 (166)
T cd00877           3 LVLVGDGGTGKTTFVKRHLTG   23 (166)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            688999999999999999753

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01898 Obg Obg subfamily

Probab=83.10  E-value=1.1  Score=38.28  Aligned_cols=22  Identities=18%  Similarity=0.323  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+|.+||||+|+.++|....
T Consensus         3 v~ivG~~~~GKStl~~~l~~~~   24 (170)
T cd01898           3 VGLVGLPNAGKSTLLSAISNAK   24 (170)
T ss_pred             eEEECCCCCCHHHHHHHHhcCC
Confidence            7889999999999999998654

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=83.10  E-value=1.2  Score=41.50  Aligned_cols=28  Identities=18%  Similarity=0.380  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+|+||+||+|+.+.|....
T Consensus        28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         28 IYKREVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3467899999999999999999887653

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=83.08  E-value=1.1  Score=37.78  Aligned_cols=22  Identities=32%  Similarity=0.637  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      -|+|+|++||||+++..+++..
T Consensus         4 ki~i~G~~~~GKtsl~~~~~~~   25 (164)
T cd04145           4 KLVVVGGGGVGKSALTIQFIQS   25 (164)
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            3788999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=83.06  E-value=1.1  Score=40.75  Aligned_cols=28  Identities=32%  Similarity=0.642  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChhHHHHHHHh-hCCCCc
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLIN-KFPDKY  216 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~-~~p~~F  216 (352)
                      --|+|+|++||||+++..+++. .++..|
T Consensus        10 ~kv~liG~~g~GKTtLi~~~~~~~~~~~~   38 (215)
T PTZ00132         10 FKLILVGDGGVGKTTFVKRHLTGEFEKKY   38 (215)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhCCCCCCC
Confidence            4588999999999999976654 444433

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=83.05  E-value=1  Score=36.99  Aligned_cols=21  Identities=19%  Similarity=0.555  Sum_probs=18.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |.|.||+|+||+++...|+..
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~   21 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKD   21 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            568899999999999998764

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=83.04  E-value=1.6  Score=38.29  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHH
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTL  208 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L  208 (352)
                      +..+.++|+||+|+||+++.+.+
T Consensus        19 ~~~~~~~i~G~NgsGKS~~l~~i   41 (162)
T cd03227          19 GEGSLTIITGPNGSGKSTILDAI   41 (162)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHH
Confidence            44579999999999999998865

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=83.04  E-value=1.2  Score=43.12  Aligned_cols=26  Identities=15%  Similarity=0.382  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+-.|+|+||||+||+||.+.|...
T Consensus        28 ~~GE~VaiIG~SGaGKSTLLR~lngl   53 (258)
T COG3638          28 NQGEMVAIIGPSGAGKSTLLRSLNGL   53 (258)
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcc
Confidence            46789999999999999999988663

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=83.02  E-value=1.1  Score=39.05  Aligned_cols=23  Identities=30%  Similarity=0.499  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|.|++||||+|+.+.|....
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l   23 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKL   23 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHH
Confidence            37889999999999999998864

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=83.00  E-value=1.3  Score=41.62  Aligned_cols=28  Identities=21%  Similarity=0.415  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+|+||+||+|+.+.|....
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~   57 (259)
T PRK14260         30 IYRNKVTAIIGPSGCGKSTFIKTLNRIS   57 (259)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3468899999999999999999988754

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=82.99  E-value=1.1  Score=37.84  Aligned_cols=29  Identities=41%  Similarity=0.826  Sum_probs=22.4

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCcccc
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKYAYP  219 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F~~~  219 (352)
                      |+++|+.||||+++..++... ++..+...
T Consensus         2 i~vvG~~~vGKtsl~~~~~~~~~~~~~~~t   31 (162)
T PF00071_consen    2 IVVVGDSGVGKTSLINRLINGEFPENYIPT   31 (162)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSSTTSSSETT
T ss_pred             EEEECCCCCCHHHHHHHHHhhccccccccc
Confidence            688999999999999999874 34444333

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PHA00729 NTP-binding motif containing protein

Probab=82.99  E-value=1.1  Score=42.59  Aligned_cols=23  Identities=17%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..|+|.|++|+||+++...|+..
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~   40 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARD   40 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999875

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=82.97  E-value=1.1  Score=43.91  Aligned_cols=68  Identities=21%  Similarity=0.214  Sum_probs=37.9

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh-CCCCccccccccccccceeEEEeecCCcchhhhhc-cCC-CCCccccCChhH
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK-FPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARK-DNV-AGSAGLIPSPEL  261 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~-~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~-~~~-~~~~g~~p~~~~  261 (352)
                      ...+-.+||+|||||||+|..++.-.- .|.      +-.++..|.-+.     +.+=..+|| -|| .-.-||||+-..
T Consensus        24 I~~gef~vliGpSGsGKTTtLkMINrLiept------~G~I~i~g~~i~-----~~d~~~LRr~IGYviQqigLFPh~Tv   92 (309)
T COG1125          24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEPT------SGEILIDGEDIS-----DLDPVELRRKIGYVIQQIGLFPHLTV   92 (309)
T ss_pred             ecCCeEEEEECCCCCcHHHHHHHHhcccCCC------CceEEECCeecc-----cCCHHHHHHhhhhhhhhcccCCCccH
Confidence            346789999999999999987644221 111      110111111111     111123444 577 778899998655


Q ss_pred             HH
Q psy12793        262 QE  263 (352)
Q Consensus       262 ~~  263 (352)
                      +|
T Consensus        93 ~e   94 (309)
T COG1125          93 AE   94 (309)
T ss_pred             HH
Confidence            44

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=82.97  E-value=1.4  Score=41.79  Aligned_cols=25  Identities=16%  Similarity=0.323  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ....++|.||+|+||+++...+...
T Consensus        41 ~~~~vll~GppGtGKTtlA~~ia~~   65 (261)
T TIGR02881        41 QVLHMIFKGNPGTGKTTVARILGKL   65 (261)
T ss_pred             CcceEEEEcCCCCCHHHHHHHHHHH
Confidence            3467899999999999999988764

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=82.95  E-value=1.3  Score=41.14  Aligned_cols=29  Identities=17%  Similarity=0.240  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~   51 (237)
T TIGR00968        23 VPTGSLVALLGPSGSGKSTLLRIIAGLEQ   51 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            35688999999999999999999887543

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=82.94  E-value=1.3  Score=41.44  Aligned_cols=27  Identities=22%  Similarity=0.404  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+|+||+||+|+.+.|....
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         28 YENKITALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            468899999999999999999998753

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=82.93  E-value=1.2  Score=40.06  Aligned_cols=22  Identities=23%  Similarity=0.614  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|.|++|+||+|+..++++..
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHh
Confidence            6899999999999999998864

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=82.93  E-value=1.3  Score=38.21  Aligned_cols=28  Identities=14%  Similarity=0.351  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+|++|+||+|+.+.+....+
T Consensus        23 ~~g~~~~i~G~nGsGKStll~~l~g~~~   50 (157)
T cd00267          23 KAGEIVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4568999999999999999998876543

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01868 Rab11_like Rab11-like

Probab=82.93  E-value=1.1  Score=38.20  Aligned_cols=22  Identities=27%  Similarity=0.658  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      -|+++|++||||+++.+++...
T Consensus         5 ki~vvG~~~~GKSsli~~l~~~   26 (165)
T cd01868           5 KIVLIGDSGVGKSNLLSRFTRN   26 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4788999999999999999764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PLN02748 tRNA dimethylallyltransferase

Probab=82.88  E-value=1.4  Score=46.21  Aligned_cols=28  Identities=32%  Similarity=0.617  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+++|+|+||+||||++|...|+..+.
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~   47 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFP   47 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3556899999999999999999988754

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=82.85  E-value=1.2  Score=42.74  Aligned_cols=29  Identities=14%  Similarity=0.228  Sum_probs=24.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~   58 (287)
T PRK13641         30 LEEGSFVALVGHTGSGKSTLMQHFNALLK   58 (287)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            34678999999999999999999887543

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=82.82  E-value=1.2  Score=44.29  Aligned_cols=27  Identities=15%  Similarity=0.283  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~   48 (352)
T PRK11144         22 PAQGITAIFGRSGAGKTSLINAISGLT   48 (352)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999887653

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=82.80  E-value=1.1  Score=45.07  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..++|+||||+||+|+.+.|....+
T Consensus        16 i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~   44 (363)
T TIGR01186        16 IAKGEIFVIMGLSGSGKSTTVRMLNRLIE   44 (363)
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence            34688999999999999999998877544

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR00101 ureG urease accessory protein UreG

Probab=82.78  E-value=1.3  Score=40.67  Aligned_cols=25  Identities=16%  Similarity=0.355  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      .+.|+||+|+||+|+.++++...+.
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~   27 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQ   27 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCc
Confidence            5788999999999999999887554

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=82.76  E-value=1.3  Score=41.25  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.4

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...+..+.|+||+|+||+|+.+.|...
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   52 (250)
T PRK14266         26 IPKNSVTALIGPSGCGKSTFIRTLNRM   52 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            346889999999999999999998754

>PF13245 AAA_19: Part of AAA domain

Probab=82.71  E-value=1.6  Score=34.19  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=17.0

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      .+.+||.||+|+||+++.-.++.
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~   32 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIA   32 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            56788899999999955444443

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=82.71  E-value=1.2  Score=39.49  Aligned_cols=23  Identities=17%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      |.|+|++||||+|+..+|+....
T Consensus         2 i~i~G~~gsGKTtl~~~l~~~l~   24 (155)
T TIGR00176         2 LQIVGPKNSGKTTLIERLVKALK   24 (155)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999988643

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PLN02459 probable adenylate kinase

Probab=82.71  E-value=1.1  Score=43.52  Aligned_cols=23  Identities=30%  Similarity=0.518  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|||+||+||||+|+..+|.+.+
T Consensus        31 ~ii~~G~PGsGK~T~a~~la~~~   53 (261)
T PLN02459         31 NWVFLGCPGVGKGTYASRLSKLL   53 (261)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999998864

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=82.71  E-value=1.2  Score=44.72  Aligned_cols=29  Identities=34%  Similarity=0.627  Sum_probs=25.4

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ..+..|+|+||+||||+|+.+.|+...|.
T Consensus       160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~  188 (344)
T PRK13851        160 VGRLTMLLCGPTGSGKTTMSKTLISAIPP  188 (344)
T ss_pred             HcCCeEEEECCCCccHHHHHHHHHcccCC
Confidence            45788999999999999999999987664

>cd01878 HflX HflX subfamily

Probab=82.66  E-value=1.1  Score=40.14  Aligned_cols=25  Identities=24%  Similarity=0.313  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..-|+|+|++||||+++.+++....
T Consensus        41 ~~~I~iiG~~g~GKStLl~~l~~~~   65 (204)
T cd01878          41 IPTVALVGYTNAGKSTLFNALTGAD   65 (204)
T ss_pred             CCeEEEECCCCCCHHHHHHHHhcch
Confidence            3578889999999999999998753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=82.65  E-value=1.3  Score=41.42  Aligned_cols=25  Identities=12%  Similarity=0.352  Sum_probs=22.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ..+..+.|+||||+||+|+.+.|..
T Consensus        27 ~~Ge~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245         27 EEKSVVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhh
Confidence            4678999999999999999998864

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=82.65  E-value=1.2  Score=40.94  Aligned_cols=30  Identities=33%  Similarity=0.536  Sum_probs=26.5

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      |+..+.|+|+||-.|||+||.++|++.+-.
T Consensus         5 p~F~K~VailG~ESsGKStLv~kLA~~fnt   34 (187)
T COG3172           5 PFFVKTVAILGGESSGKSTLVNKLANIFNT   34 (187)
T ss_pred             hhhheeeeeecCcccChHHHHHHHHHHhCC
Confidence            567889999999999999999999987655

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=82.65  E-value=1.3  Score=42.40  Aligned_cols=29  Identities=21%  Similarity=0.330  Sum_probs=24.4

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~   53 (275)
T PRK13639         25 AEKGEMVALLGPNGAGKSTLFLHFNGILK   53 (275)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34678999999999999999998876543

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=82.64  E-value=1.3  Score=41.25  Aligned_cols=27  Identities=19%  Similarity=0.289  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+|+||+||+|+.+.|....
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         28 EEKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            467899999999999999999888754

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=82.63  E-value=1.3  Score=42.10  Aligned_cols=28  Identities=25%  Similarity=0.443  Sum_probs=24.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~   51 (255)
T cd03236          24 REGQVLGLVGPNGIGKSTALKILAGKLK   51 (255)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            4678999999999999999998877543

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=82.63  E-value=1.2  Score=43.38  Aligned_cols=27  Identities=22%  Similarity=0.369  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|+...
T Consensus        29 ~~Gei~gllG~NGAGKTTllk~l~gl~   55 (293)
T COG1131          29 EPGEIFGLLGPNGAGKTTLLKILAGLL   55 (293)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence            457899999999999999999998754

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=82.62  E-value=1.4  Score=41.10  Aligned_cols=27  Identities=15%  Similarity=0.295  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (252)
T PRK14272         28 QRGTVNALIGPSGCGKTTFLRAINRMH   54 (252)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            467899999999999999999988754

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=82.61  E-value=1.3  Score=41.68  Aligned_cols=28  Identities=21%  Similarity=0.256  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+|+||+||+|+.+.|....
T Consensus        35 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         35 IPKNSVTALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3467899999999999999999887654

>PRK07667 uridine kinase; Provisional

Probab=82.61  E-value=1.3  Score=40.18  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .+|-|.|++||||+|+.+.|.....
T Consensus        18 ~iIgI~G~~gsGKStla~~L~~~l~   42 (193)
T PRK07667         18 FILGIDGLSRSGKTTFVANLKENMK   42 (193)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5677789999999999999987643

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=82.47  E-value=1.3  Score=42.35  Aligned_cols=29  Identities=17%  Similarity=0.471  Sum_probs=24.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||+|+||+|+.+.|+...+
T Consensus        47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~   75 (264)
T PRK13546         47 AYEGDVIGLVGINGSGKSTLSNIIGGSLS   75 (264)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence            34678999999999999999999987643

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=82.45  E-value=1.3  Score=41.77  Aligned_cols=26  Identities=15%  Similarity=0.383  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..++|+|+||+||+|+.+.|...
T Consensus        40 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   65 (265)
T PRK14252         40 HEKQVTALIGPSGCGKSTFLRCFNRM   65 (265)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999988764

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=82.44  E-value=1.3  Score=44.34  Aligned_cols=28  Identities=18%  Similarity=0.266  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..++|+||||+||+|+.+.++...
T Consensus        29 i~~Ge~~~llGpsGsGKSTLLr~IaGl~   56 (351)
T PRK11432         29 IKQGTMVTLLGPSGCGKTTVLRLVAGLE   56 (351)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            3467899999999999999999887654

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=82.33  E-value=1.2  Score=40.85  Aligned_cols=23  Identities=17%  Similarity=0.462  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|.|+||+|||++|+...|.+..
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~   24 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHL   24 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHh
Confidence            57889999999999999998853

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=82.30  E-value=1.3  Score=44.02  Aligned_cols=28  Identities=11%  Similarity=0.180  Sum_probs=24.0

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        20 i~~Gei~~l~G~nGsGKSTLl~~iaGl~   47 (354)
T TIGR02142        20 LPGQGVTAIFGRSGSGKTTLIRLIAGLT   47 (354)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3467899999999999999999887754

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK06620 hypothetical protein; Validated

Probab=82.29  E-value=1.4  Score=41.03  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +.++|.||+|+||+++.+...+.
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~   67 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNL   67 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhc
Confidence            67999999999999999975543

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=82.28  E-value=1.4  Score=42.33  Aligned_cols=29  Identities=14%  Similarity=0.358  Sum_probs=24.4

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.+....+
T Consensus        30 i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~   58 (279)
T PRK13635         30 VYEGEWVAIVGHNGSGKSTLAKLLNGLLL   58 (279)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence            34678999999999999999998876543

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=82.26  E-value=1.6  Score=38.20  Aligned_cols=26  Identities=19%  Similarity=0.390  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+..|+|.|+.|+||+|+.+.+++..
T Consensus        21 ~~~~i~l~G~lGaGKTtl~~~l~~~l   46 (133)
T TIGR00150        21 FGTVVLLKGDLGAGKTTLVQGLLQGL   46 (133)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            45689999999999999999998864

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=82.25  E-value=1.5  Score=39.21  Aligned_cols=26  Identities=23%  Similarity=0.457  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      +.|.|+|++|+||+|+..+|+.....
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~   27 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSA   27 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            56889999999999999999987543

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>cd04110 Rab35 Rab35 subfamily

Probab=82.24  E-value=1.1  Score=40.17  Aligned_cols=23  Identities=22%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .-|+|+|++||||+++..++...
T Consensus         7 ~kivvvG~~~vGKTsli~~l~~~   29 (199)
T cd04110           7 FKLLIIGDSGVGKSSLLLRFADN   29 (199)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            34889999999999999999864

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=82.18  E-value=1.3  Score=42.54  Aligned_cols=27  Identities=11%  Similarity=0.324  Sum_probs=23.6

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...+..+.|+||||+||+|+.+.|...
T Consensus        62 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl   88 (286)
T PRK14275         62 ILSKYVTAIIGPSGCGKSTFLRAINRM   88 (286)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            356789999999999999999988764

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=82.17  E-value=1.4  Score=41.74  Aligned_cols=26  Identities=19%  Similarity=0.327  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+||||+||+|+.+.|...
T Consensus        34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl   59 (264)
T PRK14243         34 PKNQITAFIGPSGCGKSTILRCFNRL   59 (264)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            46889999999999999999988754

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=82.16  E-value=1.3  Score=41.47  Aligned_cols=28  Identities=21%  Similarity=0.279  Sum_probs=24.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.+....+
T Consensus        25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   52 (256)
T TIGR03873        25 PPGSLTGLLGPNGSGKSTLLRLLAGALR   52 (256)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence            4688999999999999999998877543

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd04118 Rab24 Rab24 subfamily

Probab=82.14  E-value=1.2  Score=39.19  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+|++||||++|..+++...
T Consensus         3 i~vvG~~~vGKSsLi~~~~~~~   24 (193)
T cd04118           3 VVMLGKESVGKTSLVERYVHHR   24 (193)
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7889999999999999998743

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd01863 Rab18 Rab18 subfamily

Probab=82.11  E-value=1.2  Score=37.60  Aligned_cols=21  Identities=24%  Similarity=0.604  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+++|++||||+++.++|...
T Consensus         3 i~v~G~~~~GKSsli~~l~~~   23 (161)
T cd01863           3 ILLIGDSGVGKSSLLLRFTDD   23 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            688999999999999999864

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=82.09  E-value=1.4  Score=42.69  Aligned_cols=26  Identities=19%  Similarity=0.452  Sum_probs=22.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ...+..+-|+||+|+||+|+.+.++.
T Consensus        27 v~~G~~~~iiGPNGaGKSTLlK~iLG   52 (254)
T COG1121          27 VEKGEITALIGPNGAGKSTLLKAILG   52 (254)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhC
Confidence            34568999999999999999998876

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=82.08  E-value=1.3  Score=44.52  Aligned_cols=27  Identities=15%  Similarity=0.335  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~   53 (369)
T PRK11000         27 HEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (369)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            467899999999999999999887653

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=82.05  E-value=1.2  Score=42.04  Aligned_cols=29  Identities=24%  Similarity=0.603  Sum_probs=25.9

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDK  215 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~  215 (352)
                      .+..|+++|+.||||+|+...|+...|..
T Consensus       126 ~~~~ili~G~tGSGKTT~l~all~~i~~~  154 (270)
T PF00437_consen  126 GRGNILISGPTGSGKTTLLNALLEEIPPE  154 (270)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred             cceEEEEECCCccccchHHHHHhhhcccc
Confidence            47899999999999999999999987765

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=82.03  E-value=1.3  Score=44.33  Aligned_cols=28  Identities=18%  Similarity=0.300  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.++...
T Consensus        27 i~~Ge~~~llG~sGsGKSTLLr~iaGl~   54 (356)
T PRK11650         27 VADGEFIVLVGPSGCGKSTLLRMVAGLE   54 (356)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            3467899999999999999999887754

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=82.00  E-value=1.4  Score=42.11  Aligned_cols=27  Identities=11%  Similarity=0.362  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+|+||+||+|+.+.|....
T Consensus        28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~   54 (277)
T PRK13652         28 PRNSRIAVIGPNGAGKSTLFRHFNGIL   54 (277)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998754

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=81.98  E-value=1.5  Score=39.90  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      +..|.|.|+.||||+|+.+.|.+
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~   24 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE   24 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999998876

>PRK08727 hypothetical protein; Validated

Probab=81.97  E-value=1.4  Score=41.30  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChhHHHHHHHh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      .+|+|.||+|+||+++...+..
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~   63 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCA   63 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5699999999999999998744

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=81.96  E-value=1.3  Score=40.19  Aligned_cols=21  Identities=29%  Similarity=0.384  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCChhHHHHHHH
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      +.++|.||+|+||+|+.+.+.
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            789999999999999999876

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd04177 RSR1 RSR1 subgroup

Probab=81.91  E-value=1.3  Score=38.19  Aligned_cols=21  Identities=33%  Similarity=0.718  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++.++++..
T Consensus         4 i~liG~~~~GKTsli~~~~~~   24 (168)
T cd04177           4 IVVLGAGGVGKSALTVQFVQN   24 (168)
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999999853

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=81.90  E-value=1.5  Score=37.04  Aligned_cols=24  Identities=25%  Similarity=0.314  Sum_probs=20.8

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      |+|+|++||||+++.+++....+.
T Consensus         2 i~iiG~~~~GKssli~~~~~~~~~   25 (158)
T cd00878           2 ILILGLDGAGKTTILYKLKLGEVV   25 (158)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCCC
Confidence            688999999999999999886543

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=81.88  E-value=1.4  Score=44.10  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=23.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.+....
T Consensus        26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~   52 (353)
T PRK10851         26 PSGQMVALLGPSGSGKTTLLRIIAGLE   52 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            467899999999999999999888754

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=81.82  E-value=1.4  Score=44.13  Aligned_cols=27  Identities=22%  Similarity=0.330  Sum_probs=23.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.+....
T Consensus        28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~   54 (353)
T TIGR03265        28 KKGEFVCLLGPSGCGKTTLLRIIAGLE   54 (353)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            467899999999999999999887754

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=81.78  E-value=1.6  Score=41.82  Aligned_cols=26  Identities=23%  Similarity=0.524  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .+.++|.||+|+||+++...+.++..
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~   55 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMG   55 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            45689999999999999999988654

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=81.78  E-value=1.4  Score=43.06  Aligned_cols=27  Identities=22%  Similarity=0.372  Sum_probs=23.7

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|+...
T Consensus        31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~   57 (306)
T PRK13537         31 QRGECFGLLGPNGAGKTTTLRMLLGLT   57 (306)
T ss_pred             eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999998753

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=81.67  E-value=1.5  Score=42.16  Aligned_cols=27  Identities=19%  Similarity=0.315  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|+...
T Consensus        31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~   57 (282)
T PRK13640         31 PRGSWTALIGHNGSGKSTISKLINGLL   57 (282)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            457899999999999999999988764

>cd04122 Rab14 Rab14 subfamily

Probab=81.67  E-value=1.3  Score=38.05  Aligned_cols=21  Identities=24%  Similarity=0.618  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++.+++...
T Consensus         5 i~iiG~~~vGKTsli~~~~~~   25 (166)
T cd04122           5 YIIIGDMGVGKSCLLHQFTEK   25 (166)
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            778999999999999999764

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=81.64  E-value=1.5  Score=42.06  Aligned_cols=28  Identities=14%  Similarity=0.239  Sum_probs=23.9

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (279)
T PRK13650         30 VKQGEWLSIIGHNGSGKSTTVRLIDGLL   57 (279)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999999887653

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=81.64  E-value=1.4  Score=43.14  Aligned_cols=24  Identities=17%  Similarity=0.286  Sum_probs=20.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHH
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      ...+.|+|+|++||||+|+.+.|.
T Consensus         4 ~~~~~i~i~G~~GsGKtt~~~~l~   27 (288)
T PRK05416          4 APMRLVIVTGLSGAGKSVALRALE   27 (288)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHH
Confidence            345789999999999999999885

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=81.61  E-value=1.4  Score=43.82  Aligned_cols=28  Identities=21%  Similarity=0.388  Sum_probs=24.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.|....
T Consensus        64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~   91 (340)
T PRK13536         64 VASGECFGLLGPNGAGKSTIARMILGMT   91 (340)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            3468899999999999999999998754

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=81.61  E-value=1.5  Score=41.91  Aligned_cols=26  Identities=15%  Similarity=0.379  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+||||+||+|+.+.|...
T Consensus        44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl   69 (274)
T PRK14265         44 PAKKIIAFIGPSGCGKSTLLRCFNRM   69 (274)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            46789999999999999999988754

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=81.56  E-value=1.2  Score=47.99  Aligned_cols=24  Identities=33%  Similarity=0.566  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      .+++|+|+||+|+||++|...|..
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~  125 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKS  125 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHH
Confidence            568999999999999999998866

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=81.55  E-value=1.5  Score=39.95  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=19.9

Q ss_pred             CCcEEEEEcCCCCChhHHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTL  208 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L  208 (352)
                      ...+.+|+||+|+||+++.+.+
T Consensus        23 ~~~~~~i~G~NGsGKS~ileAi   44 (220)
T PF02463_consen   23 SPGLNVIVGPNGSGKSNILEAI   44 (220)
T ss_dssp             TSSEEEEEESTTSSHHHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHH
Confidence            4568999999999999999988

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=81.54  E-value=1.5  Score=41.91  Aligned_cols=28  Identities=25%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..+..+.|+||||+||+|+.+.|....+
T Consensus        45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   72 (276)
T PRK14271         45 PARAVTSLMGPTGSGKTTFLRTLNRMND   72 (276)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4678999999999999999999987543

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=81.54  E-value=1.5  Score=42.47  Aligned_cols=29  Identities=17%  Similarity=0.352  Sum_probs=24.6

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ...+..+.|+||||+||+|+.+.|....+
T Consensus        60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~   88 (282)
T cd03291          60 IEKGEMLAITGSTGSGKTSLLMLILGELE   88 (282)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            34678999999999999999998887543

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=81.54  E-value=1.5  Score=41.92  Aligned_cols=27  Identities=19%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.|....
T Consensus        26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (274)
T PRK13644         26 KKGEYIGIIGKNGSGKSTLALHLNGLL   52 (274)
T ss_pred             eCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            468899999999999999999998754

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=81.54  E-value=1.3  Score=40.08  Aligned_cols=21  Identities=24%  Similarity=0.461  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++|+||+|+.+.|...
T Consensus         4 I~i~G~~g~GKSSLin~L~g~   24 (197)
T cd04104           4 IAVTGESGAGKSSFINALRGV   24 (197)
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999873

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	352
1kgd_A	180	Crystal Structure Of The Guanylate Kinase-Like Doma		6e-13
1kgd_A	180	Crystal Structure Of The Guanylate Kinase-Like Doma		1e-10
3tvt_A	292	Structural Basis For Discs Large Interaction With P		2e-10
3ney_A	197	Crystal Structure Of The Kinase Domain Of Mpp1P55 L		3e-08
3ney_A	197	Crystal Structure Of The Kinase Domain Of Mpp1P55 L		1e-06
3uat_A	296	Guanylate Kinase Domains Of The Maguk Family Scaffo		5e-08
1jxm_A	301	Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag		3e-07
1kjw_A	295	Sh3-Guanylate Kinase Module From Psd-95 Length = 29		3e-07
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		5e-07
2eyw_A	78	N-Terminal Sh3 Domain Of Ct10-Regulated Kinase Leng		2e-06
2dvj_A	230	Phosphorylated Crk-Ii Length = 230		3e-06
2eyy_A	204	Ct10-Regulated Kinase Isoform I Length = 204		3e-06
2eyz_A	304	Ct10-Regulated Kinase Isoform Ii Length = 304		3e-06
2l3s_A	163	Structure Of The Autoinhibited Crk Length = 163		9e-06
1lvg_A	198	Crystal Structure Of Mouse Guanylate Kinase In Comp		7e-05
1m3c_A	60	Solution Structure Of A Circular Form Of The N-Term		1e-04
1m3b_A	58	Solution Structure Of A Circular Form Of The N-Term		1e-04
1m30_A	58	Solution Structure Of N-Terminal Sh3 Domain From On		1e-04
1b07_A	65	Crk Sh3 Domain Complexed With Peptoid Inhibitor Len		1e-04
1m3a_A	57	Solution Structure Of A Circular Form Of The Trunca		1e-04
1cka_A	57	Structural Basis For The Specific Interaction Of Ly		1e-04
3sem_A	60	Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Le		3e-04
1sem_A	58	Structural Determinants Of Peptide-Binding Orientat		3e-04
1k76_A	62	Solution Structure Of The C-Terminal Sem-5 Sh3 Doma		3e-04
1gky_A	187	Refined Structure Of The Complex Between Guanylate		8e-04
1ex6_A	186	Crystal Structure Of Unliganded Form Of Guanylate K		8e-04

>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of Human Cask Length = 180

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/111 (39%), Positives = 56/111 (50%), Gaps = 30/111 (27%)
Query: 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ---------------FITVCSV 229
           S  RKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P                +      
Sbjct: 2   SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQ 61
Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGI 280
           M Q IS +++  + + +D + G              T   TI K  HEQG+
Sbjct: 62  MMQDISNNEYLEYGSHEDAMYG--------------TKLETIRKI-HEQGL 97

>pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of Human Cask Length = 180

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 31/36 (86%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG 330
           TTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG
Sbjct: 40  TTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYG 75

>pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins Length = 292

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 38/177 (21%)
Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGLI 122
           ++VRA F+Y+P  DD +P    G+ F+ GDIL + +  D  WWQAR+   DN     G++
Sbjct: 6   LYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIV 63
Query: 123 PSPELQEWRTACSTIDKTKHEQVNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVK 182
           PS   + W       D++                           V  + ++++YE V +
Sbjct: 64  PSK--RRWERKMRARDRS---------------------------VKSEENVLSYEAVQR 94
Query: 183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDH 239
           L     + +++LG     +  I + LI+++PDK+   VP   T     +++  +D H
Sbjct: 95  LSINYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPH-TTRPKREYEVDGRDYH 147

>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55 Length = 197

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
           RKTLVL+GA GVGR HIKN L+++ P+K+ YPVP
Sbjct: 19  RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVP 52

>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55 Length = 197

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/36 (55%), Positives = 29/36 (80%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYG 330
           TTR PR  EE+G+ Y+FIS +EM  +I+AN++LE+G
Sbjct: 54  TTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFG 89

>pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold Proteins As Specific Phospho-Protein Binding Modules Length = 296

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 71/159 (44%), Gaps = 37/159 (23%)
Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGLI 122
           ++VRA F+Y+   D  +P    G+ F+ GDIL +I+  D  WWQAR+   D  +   G+I
Sbjct: 12  LYVRALFDYDKTKDSGLPSQ--GLNFKFGDILHVINASDDEWWQARQVTPDGESDEVGVI 69
Query: 123 PSPELQEWRTACSTIDKTKHEQVNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYEEVVK 182
           PS            ++K +  ++    F                       +++YE V +
Sbjct: 70  PSKR---------RVEKKERARLKTVKFNSK--------------------VLSYEPVNQ 100
Query: 183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
                 + +++LG     +  + + LI++FPDK+   VP
Sbjct: 101 QEVNYTRPVIILGPM---KDRVNDDLISEFPDKFGSCVP 136

>pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 39/182 (21%)
Query: 66  IFVRAQFNYNPLDDDLIPCA--QAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAG 120
            ++RA F+Y+   D    C      ++F+ GD+L +I   D  WWQAR+   D+     G
Sbjct: 8   FYIRALFDYDKTKD----CGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIG 63
Query: 121 LIPSP---ELQEWRTACSTIDKTKHEQVNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTY 177
            IPS    E +EW        K K    +    GR                  +  +++Y
Sbjct: 64  FIPSKRRVERREWSRL-----KAKDWGSSSGSQGR------------------EDSVLSY 100
Query: 178 EEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKD 237
           E V ++     + +++LG     +    + L+++FPDK+   VP   T     ++I  +D
Sbjct: 101 ETVTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPH-TTRPKREYEIDGRD 156
Query: 238 DH 239
            H
Sbjct: 157 YH 158

>pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 Length = 295

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 39/182 (21%)
Query: 66  IFVRAQFNYNPLDDDLIPCA--QAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAG 120
            ++RA F+Y+   D    C      ++F+ GD+L +I   D  WWQAR+   D+     G
Sbjct: 2   FYIRALFDYDKTKD----CGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIG 57
Query: 121 LIPSP---ELQEWRTACSTIDKTKHEQVNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTY 177
            IPS    E +EW        K K    +    GR                  +  +++Y
Sbjct: 58  FIPSKRRVERREWSRL-----KAKDWGSSSGSQGR------------------EDSVLSY 94
Query: 178 EEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKD 237
           E V ++     + +++LG     +    + L+++FPDK+   VP   T     ++I  +D
Sbjct: 95  ETVTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPH-TTRPKREYEIDGRD 150
Query: 238 DH 239
            H
Sbjct: 151 YH 152

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/181 (24%), Positives = 77/181 (42%), Gaps = 39/181 (21%)
Query: 67  FVRAQFNYNPLDDDLIPCA--QAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGL 121
           ++RA F+Y+   D    C      ++F+ GD+L +I   D  WWQAR+   D+     G 
Sbjct: 429 YIRALFDYDKTKD----CGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGF 484
Query: 122 IPSP---ELQEWRTACSTIDKTKHEQVNCSIFGRXXXXXXXXXXXXHNAVFDQLDLVTYE 178
           IPS    E +EW        K K    +    GR                  +  +++YE
Sbjct: 485 IPSKRRVERREWSRL-----KAKDWGSSSGSQGR------------------EDSVLSYE 521
Query: 179 EVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDD 238
            V ++     + +++LG     +    + L+++FPDK+   VP   T     ++I  +D 
Sbjct: 522 TVTQMEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPH-TTRPKREYEIDGRDY 577
Query: 239 H 239
           H
Sbjct: 578 H 578

>pdb|2EYW|A Chain A, N-Terminal Sh3 Domain Of Ct10-Regulated Kinase Length = 78

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A  ++  G  G+IP P 
Sbjct: 16  YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 66
Query: 127 LQEWRTACSTI 137
           ++++R A +++
Sbjct: 67  VEKYRPASASV 77

>pdb|2DVJ|A Chain A, Phosphorylated Crk-Ii Length = 230

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A  ++  G  G+IP P 
Sbjct: 138 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 188
Query: 127 LQEWRTACSTI 137
           ++++R A +++
Sbjct: 189 VEKYRPASASV 199

>pdb|2EYY|A Chain A, Ct10-Regulated Kinase Isoform I Length = 204

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A  ++  G  G+IP P 
Sbjct: 136 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 186
Query: 127 LQEWRTACSTI 137
           ++++R A +++
Sbjct: 187 VEKYRPASASV 197

>pdb|2EYZ|A Chain A, Ct10-Regulated Kinase Isoform Ii Length = 304

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A  ++  G  G+IP P 
Sbjct: 136 YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 186
Query: 127 LQEWRTACSTI 137
           ++++R A +++
Sbjct: 187 VEKYRPASASV 197

>pdb|2L3S|A Chain A, Structure Of The Autoinhibited Crk Length = 163

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 9/71 (12%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  DD+ +P       F+ GDIL+I  K +  WW A  +++ G  G+IP P 
Sbjct: 3   YVRALFDFNGNDDEDLP-------FKKGDILKIRDKPEEQWWNA--EDMDGKRGMIPVPY 53
Query: 127 LQEWRTACSTI 137
           +++ R + +++
Sbjct: 54  VEKCRPSSASV 64

>pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex With Gmp And Adp Length = 198

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
           TTR+PR  EE+G+ YYF++ + M  DIAA  ++E+ +
Sbjct: 39  TTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAE 75

>pdb|1M3C|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal Sh3 Domain (E132c, E133g, R191g Mutant) From Oncogene Protein C-Crk Length = 60

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A  ++  G  G+IP P 
Sbjct: 5   YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 55
Query: 127 LQEW 130
           ++++
Sbjct: 56  VEKY 59

>pdb|1M3B|A Chain A, Solution Structure Of A Circular Form Of The N-Terminal Sh3 Domain (A134c, E135g, R191g Mutant) From Oncogene Protein C-Crk Length = 58

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A  ++  G  G+IP P 
Sbjct: 3   YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 53
Query: 127 LQEW 130
           ++++
Sbjct: 54  VEKY 57

>pdb|1M30|A Chain A, Solution Structure Of N-Terminal Sh3 Domain From Oncogene Protein C-Crk Length = 58

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A  ++  G  G+IP P 
Sbjct: 3   YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 53
Query: 127 LQEW 130
           ++++
Sbjct: 54  VEKY 57

>pdb|1B07|A Chain A, Crk Sh3 Domain Complexed With Peptoid Inhibitor Length = 65

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A  ++  G  G+IP P 
Sbjct: 5   YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 55
Query: 127 LQEW 130
           ++++
Sbjct: 56  VEKY 59

>pdb|1M3A|A Chain A, Solution Structure Of A Circular Form Of The Truncated N- Terminal Sh3 Domain From Oncogene Protein C-Crk Length = 57

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A  ++  G  G+IP P 
Sbjct: 2   YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 52
Query: 127 LQEW 130
           ++++
Sbjct: 53  VEKY 56

>pdb|1CKA|A Chain A, Structural Basis For The Specific Interaction Of Lysine- Containing Proline-Rich Peptides With The N-Terminal Sh3 Domain Of C-Crk Length = 57

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 9/64 (14%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A  ++  G  G+IP P 
Sbjct: 3   YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNA--EDSEGKRGMIPVPY 53
Query: 127 LQEW 130
           ++++
Sbjct: 54  VEKY 57

>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Length = 60

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 10/58 (17%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           FV+A F++NP +          +AF+ GD++ +I+KDD NWW+ + +N     G+ PS
Sbjct: 4   FVQALFDFNPQE-------SGELAFKRGDVITLINKDDPNWWEGQLNN---RRGIFPS 51

>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And Of Sequence Specificity In Sh3 Domains Length = 58

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 10/58 (17%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           FV+A F++NP +          +AF+ GD++ +I+KDD NWW+ + +N     G+ PS
Sbjct: 4   FVQALFDFNPQE-------SGELAFKRGDVITLINKDDPNWWEGQLNN---RRGIFPS 51

>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain (Minimized Average Structure) Length = 62

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 10/58 (17%)
Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           FV+A F++NP +          +AF+ GD++ +I+KDD NWW+ + +N     G+ PS
Sbjct: 6   FVQALFDFNPQE-------SGELAFKRGDVITLINKDDPNWWEGQLNN---RRGIFPS 53

>pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase And Its Substrate Gmp At 2.0 Angstroms Resolution Length = 187

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 285 SLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
           S  FSV    TTR+PR+ E NG+ Y F+S DE  S I  N+++E+ +
Sbjct: 29  SFGFSV--SSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ 73

>pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase From Yeast Length = 186

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 285 SLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
           S  FSV    TTR+PR+ E NG+ Y F+S DE  S I  N+++E+ +
Sbjct: 28  SFGFSV--SSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	352
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	2e-46
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	5e-21
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	2e-42
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	3e-21
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	2e-33
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	4e-10
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	6e-27
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	2e-15
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	6e-25
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	2e-21
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	3e-05
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	2e-18
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	1e-04
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	2e-14
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	1e-10
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	7e-14
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	9e-10
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	8e-11
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	8e-11
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-04
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	9e-11
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	2e-10
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	2e-04
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	4e-10
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	5e-10
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	5e-10
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	7e-10
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	8e-10
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	1e-09
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	8e-04
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	2e-09
1awj_A	77	ITK; transferase, regulatory intramolecular comple	2e-09
1awj_A	77	ITK; transferase, regulatory intramolecular comple	7e-04
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	2e-09
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	2e-09
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	3e-09
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	5e-09
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	6e-09
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	6e-09
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	8e-09
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	8e-09
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	9e-09
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	9e-09
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	9e-09
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	8e-04
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	9e-09
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	1e-08
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	1e-08
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	1e-08
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	1e-08
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	2e-08
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	2e-08
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	2e-08
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-08
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	3e-08
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	4e-08
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	4e-08
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	4e-08
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	5e-08
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	5e-08
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	5e-08
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	5e-08
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	6e-08
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	6e-08
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	7e-08
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	7e-08
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	8e-08
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	8e-08
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	8e-08
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	9e-08
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	9e-08
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	1e-07
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	1e-07
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	1e-07
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	1e-07
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	1e-07
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	1e-07
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	2e-07
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	2e-07
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	2e-07
1i07_A	60	Epidermal growth factor receptor kinase substrate	2e-07
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	2e-07
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	2e-07
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	2e-07
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	2e-07
1wxb_A	68	Epidermal growth factor receptor pathway substrate	3e-07
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	3e-07
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	3e-07
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	3e-07
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	3e-07
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	3e-07
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	3e-07
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	3e-07
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	3e-07
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	3e-07
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	4e-07
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	4e-07
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	4e-07
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	4e-07
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	5e-04
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	4e-07
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	4e-07
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	5e-07
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	5e-07
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	5e-07
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	5e-07
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	5e-07
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	6e-07
3u23_A	65	CD2-associated protein; structural genomics, struc	6e-07
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	6e-07
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	6e-07
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	7e-07
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	7e-07
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	7e-07
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	7e-07
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	3e-04
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	7e-07
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	8e-07
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	8e-07
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	9e-07
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	9e-07
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	1e-06
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	1e-06
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	1e-06
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	1e-06
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	1e-06
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	1e-06
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	1e-06
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	1e-06
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	1e-06
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	1e-06
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	1e-06
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	1e-06
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	1e-06
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	2e-06
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	2e-06
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-06
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	2e-06
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	2e-06
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	2e-06
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	2e-06
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	3e-06
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	3e-06
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	3e-06
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	3e-06
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	3e-06
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	4e-06
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	4e-06
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	4e-06
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-06
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	4e-06
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	4e-06
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	5e-06
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	5e-06
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	5e-06
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	5e-06
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	5e-06
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	3e-05
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	5e-06
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	5e-06
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	5e-06
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	6e-06
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	6e-06
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	9e-06
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	9e-06
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	1e-05
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	1e-05
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	1e-05
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	1e-05
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-05
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	1e-05
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-05
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	2e-05
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-05
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	2e-05
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	2e-05
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	2e-05
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	2e-05
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-05
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	3e-05
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	3e-05
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	3e-05
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	3e-05
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	3e-05
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	3e-05
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-05
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	4e-05
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	4e-05
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	4e-05
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	5e-05
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	5e-05
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	7e-05
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	8e-05
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	8e-05
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	9e-05
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	1e-04
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	2e-04
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	2e-04
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	2e-04
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	2e-04
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	2e-04
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-04
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	3e-04
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	4e-04
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	4e-04
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	4e-04
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	5e-04

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score =  159 bits (403), Expect = 2e-46
 Identities = 36/159 (22%), Positives = 67/159 (42%), Gaps = 28/159 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGLIP 123
           ++RA F+Y+   D         ++F+ GD+L +I   D  WWQAR+   D+     G IP
Sbjct: 3   YIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIP 60

Query: 124 SPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKL 183
           S    E R                       +L    + +   +   +  +++YE V ++
Sbjct: 61  SKRRVERREW--------------------SRLKAKDWGSSSGSQGREDSVLSYETVTQM 100

Query: 184 PSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
                + +++LG     +    + L+++FPDK+   VP 
Sbjct: 101 EVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPH 136

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295

 Score = 90.6 bits (225), Expect = 5e-21
 Identities = 35/144 (24%), Positives = 49/144 (34%), Gaps = 43/144 (29%)

Query: 231 FQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTA----------CSTIDKTKHE 277
             +I   D  WWQAR+   D+     G IPS    E R             S     +  
Sbjct: 31  LHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLKAKDWGSSSGSQGREDS 90

Query: 278 QGIY-----------------------------SSFSLPFSVYRRDTTRSPRSDEENGRA 308
              Y                             S F   F      TTR  R  E +GR 
Sbjct: 91  VLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRD 150

Query: 309 YYFIS-HDEMMSDIAANQYLEYGK 331
           Y+F+S  ++M  DI A++++E G+
Sbjct: 151 YHFVSSREKMEKDIQAHKFIEAGQ 174

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score =  148 bits (375), Expect = 2e-42
 Identities = 43/160 (26%), Positives = 74/160 (46%), Gaps = 37/160 (23%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGL 121
            ++VRA F+Y+P  DD +P    G+ F+ GDIL + +  D  WWQAR+   DN     G+
Sbjct: 5   SLYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGI 62

Query: 122 IPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVV 181
           +PS    E +                               A+  +V  + ++++YE V 
Sbjct: 63  VPSKRRWERK-----------------------------MRARDRSVKSEENVLSYEAVQ 93

Query: 182 KLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
           +L     + +++LG     +  I + LI+++PDK+   VP
Sbjct: 94  RLSINYTRPVIILGP---LKDRINDDLISEYPDKFGSCVP 130

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292

 Score = 91.0 bits (226), Expect = 3e-21
 Identities = 32/135 (23%), Positives = 46/135 (34%), Gaps = 34/135 (25%)

Query: 231 FQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQ-GIYSSFSL 286
             + +  D  WWQAR+   DN     G++PS    E +           E    Y +   
Sbjct: 35  LHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRWERKMRARDRSVKSEENVLSYEAVQR 94

Query: 287 PFSVYRR-----------------------------DTTRSPRSDEENGRAYYFISHDEM 317
               Y R                              TTR  R  E +GR Y+F+S  E 
Sbjct: 95  LSINYTRPVIILGPLKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQ 154

Query: 318 M-SDIAANQYLEYGK 331
           M  DI  + ++E G+
Sbjct: 155 MERDIQNHLFIEAGQ 169

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score =  125 bits (314), Expect = 2e-33
 Identities = 28/160 (17%), Positives = 50/160 (31%), Gaps = 22/160 (13%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              VR   +Y+   +D +P     I+F+  D L +  K +++WW  R        G IPS
Sbjct: 38  AFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPS 97

Query: 125 PELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLP 184
           P   E           +          +     K     K        D+V         
Sbjct: 98  PVKLENMRLQHEQRAKEF---------KLHSKEKRMPFFKKTEHTPPYDVVPS------- 141

Query: 185 SFKRKTLVLLGAHGVGRR---HIKNTLINKFPDKYAYPVP 221
               + +VL+G    G      ++  L +    ++   + 
Sbjct: 142 ---MRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRIS 178

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337

 Score = 59.5 bits (143), Expect = 4e-10
 Identities = 13/138 (9%), Positives = 28/138 (20%), Gaps = 37/138 (26%)

Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSV 290
             +  K +++WW  R        G IPSP   E           + +          F  
Sbjct: 70  LHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAKEFKLHSKEKRMPFFKK 129

Query: 291 YRRDTTRSPRSDEENG-------------------------------------RAYYFIS 313
                                                                 A   ++
Sbjct: 130 TEHTPPYDVVPSMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISITRVTADISLA 189

Query: 314 HDEMMSDIAANQYLEYGK 331
              ++++ + +  +E   
Sbjct: 190 KRSVLNNPSKHAIIERSN 207

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score =  111 bits (277), Expect = 6e-27
 Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 28/161 (17%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGL 121
             ++RA F+Y+   D         ++F+ GD+L +I   D  WWQAR+   D+     G 
Sbjct: 427 GFYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGF 484

Query: 122 IPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVV 181
           IPS    E R                  + R K      + +   +   +  +++YE V 
Sbjct: 485 IPSKRRVERRE-----------------WSRLKAK---DWGSSSGSQGREDSVLSYETVT 524

Query: 182 KLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ 222
           ++     + +++LG     +    + L+++FPDK+   VP 
Sbjct: 525 QMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPH 562

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 76.5 bits (187), Expect = 2e-15
 Identities = 36/145 (24%), Positives = 49/145 (33%), Gaps = 43/145 (29%)

Query: 230 MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWRTA----------CSTIDKTKH 276
           +  +I   D  WWQAR+   D+     G IPS    E R             S     + 
Sbjct: 456 VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLKAKDWGSSSGSQGRED 515

Query: 277 EQGIY-----------------------------SSFSLPFSVYRRDTTRSPRSDEENGR 307
               Y                             S F   F      TTR  R  E +GR
Sbjct: 516 SVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGR 575

Query: 308 AYYFISHDEMM-SDIAANQYLEYGK 331
            Y+F+S  E M  DI A++++E G+
Sbjct: 576 DYHFVSSREKMEKDIRAHKFIEAGQ 600

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score =  102 bits (254), Expect = 6e-25
 Identities = 31/185 (16%), Positives = 54/185 (29%), Gaps = 37/185 (20%)

Query: 60  IGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN---------WWQA 110
           +GD    ++R  F   P          +G+ F  GD+  ++                W A
Sbjct: 1   MGDSF--YIRTHFELEP-------SPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLA 51

Query: 111 R---KDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRK----KKLYKDKYLA 163
               +D      G+IP+    E   +     +        S          +L   +  A
Sbjct: 52  VRMGRDLREQERGIIPNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGA 111

Query: 164 KHNAVFDQLDLVTYEEVVKLPSFKRKTL---------VLLGAHGVGRRHIKNTLINKFPD 214
           K      + DL       + P ++R  L         V+LG            L  + PD
Sbjct: 112 KKTTQRSREDLSALTRQGRYPPYERVVLREASFKRPVVILGPV---ADIAMQKLTAEMPD 168

Query: 215 KYAYP 219
           ++   
Sbjct: 169 QFEIA 173

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 93.8 bits (232), Expect = 2e-21
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 20/171 (11%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIIS---KDDHNWWQARK---DNVAGS 118
             ++R  F Y             G++F  G++ +++          W A +   ++    
Sbjct: 98  SFYIRTHFEYEKESPY-------GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVE 150

Query: 119 AGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHN----AVFDQLDL 174
            G+IP+    E   +                +  +      + L K      A   Q   
Sbjct: 151 RGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKF 210

Query: 175 VTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFIT 225
             YE VV   +   + + + G         +  L  + PD Y     +   
Sbjct: 211 PAYERVVLREAGFLRPVTIFGP---IADVAREKLAREEPDIYQIAKSEPRD 258

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 44.5 bits (104), Expect = 3e-05
 Identities = 16/143 (11%), Positives = 32/143 (22%), Gaps = 15/143 (10%)

Query: 175 VTYEEVVKLPSFKRKTLVLLGAHG---------VGRRHIKNTLINKFPDKYAYPVPQFIT 225
           +  EE V       K   +              V      +  I    +           
Sbjct: 58  IIREEAVLFLLDLPKGEEVTILAQKKKDVYRRIVESDVGDSFYIRTHFEYEKESPYGLSF 117

Query: 226 VCSVMFQIIS---KDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTKHEQG 279
               +F+++          W A +   ++     G+IP+    E   +            
Sbjct: 118 NKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKTAGGD 177

Query: 280 IYSSFSLPFSVYRRDTTRSPRSD 302
               +        +   R  R D
Sbjct: 178 RADFWRFRGLRSSKRNLRKSRED 200

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 84.9 bits (209), Expect = 2e-18
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 20/171 (11%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIIS---KDDHNWWQARK---DNVAGS 118
             ++R  F Y             G++F  G++ +++          W A +   ++    
Sbjct: 106 SFYIRTHFEYEKESPY-------GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVE 158

Query: 119 AGLIPSPELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHN----AVFDQLDL 174
            G+IP+    E   +                +  +      + L K      A   Q   
Sbjct: 159 RGIIPNKNRAEQLASVQYTLPKTAGGDRADFWRFRGLRSSKRNLRKSREDLSAQPVQTKF 218

Query: 175 VTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFIT 225
             YE VV   +   + + + G         +  L  + PD Y     +   
Sbjct: 219 PAYERVVLREAGFLRPVTIFGP---IADVAREKLAREEPDIYQIAKSEPRD 266

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 16/147 (10%), Positives = 35/147 (23%), Gaps = 17/147 (11%)

Query: 172 LDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQF-------- 223
              +  EE V       K   +       ++ +   ++        Y    F        
Sbjct: 63  FTNIIREEAVLFLLDLPKGEEVTILA-QKKKDVYRRIVESDVGDSFYIRTHFEYEKESPY 121

Query: 224 --ITVCSVMFQIIS---KDDHNWWQARK---DNVAGSAGLIPSPELQEWRTACSTIDKTK 275
                   +F+++          W A +   ++     G+IP+    E   +        
Sbjct: 122 GLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTLPKT 181

Query: 276 HEQGIYSSFSLPFSVYRRDTTRSPRSD 302
                   +        +   R  R D
Sbjct: 182 AGGDRADFWRFRGLRSSKRNLRKSRED 208

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Length = 180

 Score = 69.4 bits (171), Expect = 2e-14
 Identities = 25/37 (67%), Positives = 31/37 (83%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
           TTR P+ DEENG+ YYF+SHD+MM DI+ N+YLEYG 
Sbjct: 40  TTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGS 76

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Length = 180

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 30/37 (81%), Positives = 33/37 (89%)

Query: 185 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
           S  RKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P
Sbjct: 2   SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 38

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} Length = 197

 Score = 68.4 bits (168), Expect = 7e-14
 Identities = 20/37 (54%), Positives = 29/37 (78%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGK 331
           TTR PR  EE+G+ Y+FIS +EM  +I+AN++LE+G 
Sbjct: 54  TTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGS 90

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} Length = 197

 Score = 56.8 bits (138), Expect = 9e-10
 Identities = 24/45 (53%), Positives = 30/45 (66%)

Query: 177 YEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
                 L    RKTLVL+GA GVGR HIKN L+++ P+K+ YPVP
Sbjct: 8   SSGRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVP 52

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 56.1 bits (136), Expect = 8e-11
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A      G  G+IP 
Sbjct: 5   YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAEDSE--GKRGMIPV 53

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 56.1 bits (136), Expect = 8e-11
 Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 19/73 (26%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS- 124
            V A +++      DL          + G    I+ K+D +WW+AR  +  GS G IPS 
Sbjct: 4   IVVAMYDFQATEAHDL--------RLERGQEYIILEKNDLHWWRAR--DKYGSEGYIPSN 53

Query: 125 -------PELQEW 130
                    L ++
Sbjct: 54  YVTGKKSNNLDQY 66

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 10/42 (23%)

Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPS--------PELQEW 264
           + I+ K+D +WW+AR  +  GS G IPS          L ++
Sbjct: 27  YIILEKNDLHWWRAR--DKYGSEGYIPSNYVTGKKSNNLDQY 66

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 56.0 bits (136), Expect = 9e-11
 Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 9/63 (14%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A      G  G+IP P 
Sbjct: 3   YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAEDSE--GKRGMIPVPY 53

Query: 127 LQE 129
           +++
Sbjct: 54  VEK 56

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 21/77 (27%)

Query: 65  QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
           +  V A ++Y      +L        A +  +   ++   + +WW+ +  +  G  G +P
Sbjct: 19  ETVVIALYDYQTNDPQEL--------ALRRNEEYCLLDSSEIHWWRVQ--DRNGHEGYVP 68

Query: 124 SP----------ELQEW 130
           S           E  EW
Sbjct: 69  SSYLVEKSPNNLETYEW 85

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 12/44 (27%)

Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPSP----------ELQEW 264
           + ++   + +WW+ +  +  G  G +PS           E  EW
Sbjct: 44  YCLLDSSEIHWWRVQ--DRNGHEGYVPSSYLVEKSPNNLETYEW 85

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           V A ++Y P+  +DL          + GD   I+ + +  WW+AR  N  G  G IPS
Sbjct: 11  VVALYDYMPMNANDL--------QLRKGDEYFILEESNLPWWRARDKN--GQEGYIPS 58

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Length = 198

 Score = 57.5 bits (140), Expect = 5e-10
 Identities = 17/35 (48%), Positives = 26/35 (74%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
           TTR+PR  EE+G+ YYF++ + M  DIAA  ++E+
Sbjct: 39  TTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEH 73

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Length = 204

 Score = 57.2 bits (139), Expect = 7e-10
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
           TTR+ R  E NG  YYF+  D+    +   Q+LE+
Sbjct: 47  TTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEF 81

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Length = 218

 Score = 57.2 bits (139), Expect = 8e-10
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
           TTR  R  E+ G  YYFI        +    +LEY
Sbjct: 58  TTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEY 92

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
             A  ++      DL         F+ G+IL +I K    WW A+  +  G+ GL+P   
Sbjct: 13  YIAVGDFTAQQVGDL--------TFKKGEILLVIEKKPDGWWIAK--DAKGNEGLVPRTY 62

Query: 127 LQE 129
           L+ 
Sbjct: 63  LEP 65

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPSPELQE 263
            +I K    WW A+  +  G+ GL+P   L+ 
Sbjct: 36  LVIEKKPDGWWIAK--DAKGNEGLVPRTYLEP 65

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Length = 207

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
           TTR  R  E +G  Y+F + D   + I  +Q++EY
Sbjct: 41  TTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEY 75

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
            V A ++Y      +L        A +  +   ++   + +WW+ +  +  G  G  PS 
Sbjct: 22  LVIALYDYQTNDPQEL--------ALRCDEEYYLLDSSEIHWWRVQ--DKNGHEGYAPSS 71

Query: 126 ELQE 129
            L E
Sbjct: 72  YLVE 75

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 37.0 bits (86), Expect = 7e-04
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 231 FQIISKDDHNWWQARKDNVAGSAGLIPSPELQE 263
           + ++   + +WW+ +  +  G  G  PS  L E
Sbjct: 45  YYLLDSSEIHWWRVQ--DKNGHEGYAPSSYLVE 75

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Length = 207

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
           TTR+PR  E +G  Y+FI        I   + LE+
Sbjct: 54  TTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEW 88

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Length = 208

 Score = 55.6 bits (135), Expect = 2e-09
 Identities = 15/35 (42%), Positives = 19/35 (54%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
           TTR PR  E++G  YYF S +     I   + LEY
Sbjct: 43  TTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEY 77

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 13/61 (21%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISK--DDHNWWQARKDNVAGSAGLIP 123
            V+  + ++ + +++L         F+ G+ +++I K  +D  WW+ +  N  G  GL+P
Sbjct: 19  VVQTLYPFSSVTEEEL--------NFEKGETMEVIEKPENDPEWWKCK--NARGQVGLVP 68

Query: 124 S 124
            
Sbjct: 69  K 69

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 56.0 bits (134), Expect = 5e-09
 Identities = 29/192 (15%), Positives = 55/192 (28%), Gaps = 42/192 (21%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
            V   F +    +         + F+ G+ L+I+SK + +WW+AR  N  G+ GL+P+  
Sbjct: 149 VVVGTFKFTGERET-------DLPFEQGERLEILSKTNQDWWEAR--NALGTTGLVPANY 199

Query: 127 LQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSF 186
           +Q      +        Q +    G   + +     +  N           +        
Sbjct: 200 VQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPN 259

Query: 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARK 246
                 L                            Q + V         K  +  ++A  
Sbjct: 260 AYDPTQL-----------------------RVKKGQTVLV-------TQKMSNGMYKAE- 288

Query: 247 DNVAGSAGLIPS 258
             + G  G +P 
Sbjct: 289 --LDGQIGSVPH 298

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 10/59 (16%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              A ++Y  + +DDL        +F  G+  QI++  + +WW+AR     G  G IPS
Sbjct: 17  LFVALYDYEAITEDDL--------SFHKGEKFQILNSSEGDWWEAR-SLTTGETGYIPS 66

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 13/61 (21%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISK--DDHNWWQARKDNVAGSAGLIP 123
            V+  + ++ + +++L         F+ G+ +++I K  +D  WW+ +     G  GL+P
Sbjct: 8   VVQTLYPFSSVTEEEL--------NFEKGETMEVIEKPENDPEWWKCKNAR--GQVGLVP 57

Query: 124 S 124
            
Sbjct: 58  K 58

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 50.8 bits (122), Expect = 8e-09
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 13/63 (20%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-----NWWQARKDNVAGSAGL 121
           F RA +++ P + +        +A + GD++ I+SK D      +WW+ R  N  G+ G 
Sbjct: 9   FARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN--GNIGY 60

Query: 122 IPS 124
           IP 
Sbjct: 61  IPY 63

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Length = 219

 Score = 54.1 bits (131), Expect = 8e-09
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
           TTR PR  E +G  Y+F++HDE    I+ + +LE+
Sbjct: 52  TTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEH 86

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 50.9 bits (122), Expect = 9e-09
 Identities = 12/64 (18%), Positives = 30/64 (46%), Gaps = 11/64 (17%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPSP 125
              +  +      +L        AF+ GD++ I+   ++ +W++ +  + +G  GL+ + 
Sbjct: 20  CITKCEHTRPKPGEL--------AFRKGDVVTILEACENKSWYRVK-HHTSGQEGLLAAG 70

Query: 126 ELQE 129
            L+E
Sbjct: 71  ALRE 74

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 50.8 bits (122), Expect = 9e-09
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              A ++YN     DL        +F  G+  QI+     +WW+AR     G  G IPS
Sbjct: 8   LFVALYDYNATRWTDL--------SFHKGEKFQILEFGPGDWWEAR-SLTTGETGYIPS 57

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 52.2 bits (125), Expect = 9e-09
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            +F    + +    DD        +    G+ L I +  D+ W+ A+  N  G  GL+P 
Sbjct: 3   PLFAVTLYEFKAERDD-------ELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPV 55

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPS 258
            I +  D+ W+ A+  N  G  GL+P 
Sbjct: 29  SICAHYDYEWFIAKPINRLGGPGLVPV 55

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 51.4 bits (123), Expect = 9e-09
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 13/68 (19%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-----NWWQARKDNVAGSAGL 121
           F RA +++ P + +        +A + GD++ I+SK D      +WW+ R  N  G+ G 
Sbjct: 16  FARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN--GNIGY 67

Query: 122 IPSPELQE 129
           IP   ++ 
Sbjct: 68  IPYNYIEI 75

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Length = 205

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
           TTR  R  ++ G  Y+FI      + +    +LE+
Sbjct: 41  TTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEH 75

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 12/59 (20%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
             A++N++   + DL         F  GD+L I++   D NW++A+  N  G  G+IP+
Sbjct: 14  CIAKYNFHGTAEQDL--------PFCKGDVLTIVAVTKDPNWYKAK--NKVGREGIIPA 62

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Length = 231

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 295 TTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEY 329
           TTR+ R  E+ G+ YYF+  +E +   +  + +E+
Sbjct: 62  TTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEH 96

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 13/63 (20%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-----NWWQARKDNVAGSAGL 121
           F RA +++ P + +        +A + GD++ I+SK D      +WW+ R  N  G+ G 
Sbjct: 16  FARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN--GNIGY 67

Query: 122 IPS 124
           IP 
Sbjct: 68  IPY 70

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 15/65 (23%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR------KDNVAGSA 119
           +  A F+Y     +DL        +F+ GD LQ++      WW AR              
Sbjct: 9   YFVALFDYQARTAEDL--------SFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQ 60

Query: 120 GLIPS 124
           G IPS
Sbjct: 61  GYIPS 65

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 10/59 (16%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              A ++Y    +DDL        +F  G+  QI++  + +WW+AR     G  G IPS
Sbjct: 7   LFEALYDYEARTEDDL--------SFHKGEKFQILNSSEGDWWEAR-SLTTGETGYIPS 56

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 12/58 (20%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A  +Y    +  L        +F  G+ + I+ +   +WW       AG  G IP+
Sbjct: 10  FVAIADYAATDETQL--------SFLRGEKILILRQTTADWWWGE---RAGCCGYIPA 56

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 14/64 (21%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA-----GSAG 120
            V A ++Y      ++          + GDIL +++  + +WW+               G
Sbjct: 3   LVLALYDYQEKSPREV--------TMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQG 54

Query: 121 LIPS 124
            +P+
Sbjct: 55  FVPA 58

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 49.3 bits (118), Expect = 3e-08
 Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
           + A  +Y+P D  +    +  +A + GD++ +    DD  ++        G  GL+P+
Sbjct: 10  MIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELG---GHRGLVPA 64

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 50.2 bits (120), Expect = 4e-08
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 18/73 (24%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS- 124
              A ++Y     +DL        +F+ G+  QII+  + +WW+AR     G +G IPS 
Sbjct: 29  IFVALYDYEARTTEDL--------SFKKGERFQIINNTEGDWWEARS-IATGKSGYIPSN 79

Query: 125 -------PELQEW 130
                   + +EW
Sbjct: 80  YVVPADSIQAEEW 92

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 11/58 (18%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR-KDNVAGSAGLIPS 124
             +  +Y   ++           FQ G  ++++ ++ + WW  +  D V    G +PS
Sbjct: 13  YVSIADYEGDEETA--------GFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPS 62

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            RA + + P   D        + F+ GDI+ I    D NWW+       G  GLIPS
Sbjct: 6   FRALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWWKGT---SKGRTGLIPS 52

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              +A + Y+  DDD        I+F+  +ILQ+   +   WW+AR+ N  G  G+IPS
Sbjct: 6   YKAKALYPYDADDDD-----AYEISFEQNEILQVSDIEG-RWWKARRAN--GETGIIPS 56

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 48.4 bits (116), Expect = 5e-08
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A   Y+    ++L          Q G+ ++++ K    W +     + G  G+ PS
Sbjct: 10  FVALHTYSAHRPEEL--------DLQKGEGIRVLGKYQDGWLKGLS-LLTGRTGIFPS 58

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 66  IFVRAQFNYNP-LDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           ++    +++     D+L           +G+ L I +  +  W+ A+     G  GL+P 
Sbjct: 6   LYAIVLYDFKAEKADEL--------TTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPV 57

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            V A ++Y      ++          + GDIL +++  + +WW+   +      G +P+
Sbjct: 19  LVLALYDYQEKSPREV--------TMKKGDILTLLNSTNKDWWKVEVN---DRQGFVPA 66

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 9/57 (15%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           V A ++Y     D        +    GDI+++  KD+ +WW        G  G  P+
Sbjct: 9   VVALYDYTANRSD-------ELTIHRGDIIRVFFKDNEDWWYGSIGK--GQEGYFPA 56

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 12/66 (18%)

Query: 65  QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
           ++ V A+++Y    D +L          +  + L ++      WW+ R  N A   G +P
Sbjct: 4   EVIVIAKWDYTAQQDQEL--------DIKKNERLWLLDDSKT-WWRVR--NAANRTGYVP 52

Query: 124 SPELQE 129
           S  ++ 
Sbjct: 53  SNYVER 58

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 7/57 (12%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           V+  ++    +DD        + F  G+++ +  ++D  WW    +      G+ P 
Sbjct: 13  VKTIYDCQADNDD-------ELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPV 62

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            V A ++Y      ++          + GDIL +++  + +WW+     V    G +P+
Sbjct: 7   LVLALYDYQEKSPREV--------TMKKGDILTLLNSTNKDWWKVE---VNDRQGFVPA 54

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 48.1 bits (115), Expect = 8e-08
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 65  QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
           ++ V A+F+Y    + +L          +  + L ++      WW+ R  N     G +P
Sbjct: 7   EVVVVAKFDYVAQQEQEL--------DIKKNERLWLLDDSKS-WWRVR--NSMNKTGFVP 55

Query: 124 S 124
           S
Sbjct: 56  S 56

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 48.7 bits (116), Expect = 8e-08
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 68  VRAQFNYNPLDDDLIPCAQAG-IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A F+Y+PL     P A    + F+ G I+++    D + +   +       GLIP 
Sbjct: 20  FVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC--ARLGLIPC 75

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 47.6 bits (114), Expect = 9e-08
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 10/60 (16%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           Q+ VRA+FN+   ++D        ++F  GD++ +   ++  WW+       G  G  PS
Sbjct: 6   QLVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGT---HNGRTGWFPS 55

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 50.6 bits (120), Expect = 9e-08
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 11/66 (16%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              V   F +    +         + F+ G+ L+I+SK + +WW+AR  N  G+ GL+P+
Sbjct: 118 IEVVVGTFKFTGERET-------DLPFEQGERLEILSKTNQDWWEAR--NALGTTGLVPA 168

Query: 125 P--ELQ 128
              ++Q
Sbjct: 169 NYVQIQ 174

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
           + A ++Y+P +       +A + F  GDI+ +  + D+  ++    +   G  GL+PS
Sbjct: 10  MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELN---GQKGLVPS 64

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 10/60 (16%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            I V+A ++Y+    D        + F+ GD + +  KD   WW+   +   G  G +P+
Sbjct: 3   GIQVKALYDYDAQTGD-------ELTFKEGDTIIVHQKDPAGWWEGELN---GKRGWVPA 52

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPS 124
            +  ++Y     D +         +  ++L++I   D  +W +AR  N  G  G +P 
Sbjct: 16  CKVVYSYKASQPDELT-------IEEHEVLEVIEDGDMEDWVKAR--NKVGQVGYVPE 64

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 10/57 (17%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
                NY   ++         ++ Q G+++ +I K++  WW           G +P+
Sbjct: 11  YVVVSNYKKQENS-------ELSLQAGEVVDVIEKNESGWWFVSTS---EEQGWVPA 57

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
                 Y     D        I F+ G  +++I K+   WW  R     G  G  P+
Sbjct: 11  YVTVQPYTSQSKD-------EIGFEKGVTVEVIRKNLEGWWYIRYL---GKEGWAPA 57

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 12/61 (19%)

Query: 65  QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
            I   A+F+Y      +L        +F+ G  L +  +   +WW+ R     G  GLIP
Sbjct: 9   PIEAIAKFDYVGRTAREL--------SFKKGASLLLYQRASDDWWEGR---HNGIDGLIP 57

Query: 124 S 124
            
Sbjct: 58  H 58

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A F Y              ++F+ GD+L++  +   +WW+       G  GLIP 
Sbjct: 13  AVACFAYTGRTAQ-------ELSFRRGDVLRLHERASSDWWRGE---HNGMRGLIPH 59

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            RA + + P   D        + F+ GDI+ I    D NWW+       G  GLIPS
Sbjct: 10  FRALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWWKGT---SKGRTGLIPS 56

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           + RA +++  L++D        + F+ G++++++   + +WW  R   +    GL P+
Sbjct: 3   WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGR---LHNKLGLFPA 50

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 9/58 (15%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           + ++++++   +          ++    D+L+I+      WW+ R  +  G +G +P+
Sbjct: 3   YAKSKYDFVARNSS-------ELSVMKDDVLEILDDRR-QWWKVRNAS--GDSGFVPN 50

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           FV+A F++NP +          +AF+ GD++ +I+KDD NWW+ +   +    G+ PS
Sbjct: 4   FVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQ---LNNRRGIFPS 51

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            V   ++Y      +L          + GDIL +++  + +WW+   +   G  G +P+
Sbjct: 8   LVLVLYDYQEKSPREL--------TVKKGDILTLLNSTNKDWWKIEVN---GRQGFVPA 55

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           VRA +++  ++D+        + F+ G+++ ++   D NWWQ          GL PS
Sbjct: 8   VRALYDFEAVEDN-------ELTFKHGELITVLDDSDANWWQGENH---RGTGLFPS 54

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 10/60 (16%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           Q+ V+A+FN+   ++D        ++   GDI+ +   ++  WW+     + G  G  PS
Sbjct: 10  QLIVKARFNFKQTNED-------ELSVCKGDIIYVTRVEEGGWWEGT---LNGRTGWFPS 59

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 46.5 bits (111), Expect = 3e-07
 Identities = 10/59 (16%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +V+  +++     ++L        +    ++L+++      WW+ R  + +G AG +P 
Sbjct: 9   YVKILYDFTARNANEL--------SVLKDEVLEVLEDGRQ-WWKLR--SRSGQAGYVPC 56

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +V   +++      +L        + +  D+L+++      WW+ R  + AG  G +P 
Sbjct: 10  WVLCNYDFQARNSSEL--------SVKQRDVLEVLDDSR-KWWKVR--DPAGQEGYVPY 57

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 8/57 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A +++ P +D+        +    GDI+ I  K    W  A ++      GL+P 
Sbjct: 8   AVALYDFEPENDN-------ELRLAEGDIVFISYKHGQGWLVA-ENESGSKTGLVPE 56

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           VRA +++   +D+        + F+ G+I+ ++   D NWW+          GL PS
Sbjct: 20  VRAIYDFEAAEDN-------ELTFKAGEIITVLDDSDPNWWKGETH---QGIGLFPS 66

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 11/61 (18%)

Query: 65  QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
            I V A ++Y  +  +DL        +FQ GD + ++ +    WW+AR        G IP
Sbjct: 25  DIIVVALYDYEAIHHEDL--------SFQKGDQMVVLEESG-EWWKAR-SLATRKEGYIP 74

Query: 124 S 124
           S
Sbjct: 75  S 75

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            R  F + P   +        +    G+I+ ++ K + NW     +   G  GL+P 
Sbjct: 10  HRVLFGFVPETKE-------ELQVMPGNIVFVLKKGNDNWATVMFN---GQKGLVPC 56

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 11/61 (18%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA--GLIP 123
                +++    D++L        +F+ GD+  +  K++  WW    D   G+   G +P
Sbjct: 12  KYVGLWDFKSRTDEEL--------SFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVP 63

Query: 124 S 124
            
Sbjct: 64  H 64

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 45.7 bits (109), Expect = 3e-07
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            VRA+FN+   ++D        ++F  GD++ +   ++  WW+       G  G  PS
Sbjct: 6   VVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGT---HNGRTGWFPS 53

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
            V A+++Y    D +L          +  + L ++      WW+ R  N A   G +PS 
Sbjct: 33  IVIAKWDYTAQQDQEL--------DIKKNERLWLLDDSKT-WWRVR--NAANRTGYVPSN 81

Query: 126 ELQE 129
            ++ 
Sbjct: 82  YVER 85

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           + RA  +YN  D  L+P       F+  DI+ I  KD  N W   + N  G  G  P 
Sbjct: 12  YARALKDYNVSDTSLLP-------FKRNDIITITFKDQENKWFMGQLN--GKEGSFPV 60

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 12/58 (20%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           ++  + +      +L            G+ L+++      WW  +  N AG +G IPS
Sbjct: 10  MQVLYEFEARNPREL--------TVVQGEKLEVLDHSKR-WWLVK--NEAGRSGYIPS 56

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 8/57 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A +++ P +D+        +    GDI+ I  K    W  A  +      GL+P 
Sbjct: 4   AVALYDFEPENDN-------ELRLAEGDIVFISYKHGQGWLVAE-NESGSKTGLVPE 52

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
               +A +++    DD        +  + GDI+ I  K +  WW    +   G  G  P+
Sbjct: 7   GRLCKALYSFQARQDD-------ELNLEKGDIVIIHEKKEEGWWFGSLN---GKKGHFPA 56

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 50.0 bits (118), Expect = 4e-07
 Identities = 28/170 (16%), Positives = 47/170 (27%), Gaps = 23/170 (13%)

Query: 89  IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQVNCS 148
           + F+ G+IL II K +  WW AR  +  G  G+IP P +++   +            +  
Sbjct: 142 LPFKKGEILVIIEKPEEQWWSARNKD--GRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYG 199

Query: 149 IFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTL 208
           I        + +      AV                                +   K   
Sbjct: 200 IPEPAHAYAQPQTTTPLPAVSGSPGAAIT-----------PLPSTQNGPVFAKAIQKRVP 248

Query: 209 INKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS 258
                   A  V   + V          + +  W+   +   G  GL P 
Sbjct: 249 CAYDKTALALEVGDIVKV-------TRMNINGQWEGEVN---GRKGLFPF 288

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              +      D          +A ++GDI+++   + +  W+   +   G  GL P 
Sbjct: 242 AIQKRVPCAYDKT-------ALALEVGDIVKVTRMNINGQWEGEVN---GRKGLFPF 288

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +V+A F+++P +D         + F+ GD + ++   D NWW+       G  G+ P 
Sbjct: 4   YVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGA---CHGQTGMFPR 51

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            +A + Y+  D D        ++F   DI+ II +D   WW  R     G  GL P+
Sbjct: 8   CKALYAYDAQDTD-------ELSFNANDIIDIIKEDPSGWWTGRLR---GKQGLFPN 54

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           F  A+F+Y      +L        +F+ G  L +  +   +WW+ R     G  GL+P 
Sbjct: 8   FAIAKFDYVGRSAREL--------SFKKGASLLLYHRASEDWWEGR---HNGIDGLVPH 55

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            +  F+Y P +DD        +  ++GDI++++ + +  WW+   +   G  G+ PS
Sbjct: 10  CQVAFSYLPQNDD-------ELELKVGDIIEVVGEVEEGWWEGVLN---GKTGMFPS 56

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 8/57 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            RA + Y P ++D        +  + GD + ++ + D  W+           G  P 
Sbjct: 10  YRAMYQYRPQNED-------ELELREGDRVDVMQQCDDGWFVGV-SRRTQKFGTFPG 58

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 45.9 bits (109), Expect = 5e-07
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
                 Y  + D         I+F  G  +Q++ K +  WW  R        G  PS
Sbjct: 11  YMTCSAYQKVQDS-------EISFPAGVEVQVLEKQESGWWYVRFG---ELEGWAPS 57

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 9/60 (15%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              V+A ++Y     D        + F  G ++  +SK+   WW+             PS
Sbjct: 7   GRTVKALYDYKAKRSD-------ELTFCRGALIHNVSKEPGGWWKGDYGT--RIQQYFPS 57

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPS 124
              A +++    D+ L        +   G+ L+++  + +  W +A+        G +PS
Sbjct: 7   LFVALYDFVASGDNTL--------SITKGEKLRVLGYNHNGEWCEAQTK---NGQGWVPS 55

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +   +  F Y P ++D        +  ++GDI+ I  + +  WW    +      GL PS
Sbjct: 7   KRQCKVLFEYIPQNED-------ELELKVGDIIDINEEVEEGWWSGTLN---NKLGLFPS 56

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 11/59 (18%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            V A  +Y P  D DL         F+ G+ L+I+ +    WW+A+     G  G IP 
Sbjct: 8   LVIALHSYEPSHDGDL--------GFEKGEQLRILEQSGE-WWKAQ-SLTTGQEGFIPF 56

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPS 124
             A +++    +  I           G+ L ++ +D    W + R+    G  G +P+
Sbjct: 10  CVAIYHFEGSSEGTIS-------MAEGEDLSLMEEDKGDGWTRVRRKE--GGEGYVPT 58

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 45.3 bits (108), Expect = 7e-07
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            RA ++Y   + D        +    GDIL++I + +  WW   ++   G  G +P 
Sbjct: 11  YRALYDYTAQNPD-------ELDLSAGDILEVILEGEDGWWTVERN---GQRGFVPG 57

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            +  F Y P ++D        +  ++GDI+ I  + +  WW      +    GL PS
Sbjct: 4   CKVLFEYIPQNED-------ELELKVGDIIDINEEVEEGWWSGT---LNNKLGLFPS 50

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGS--AGLIPS 124
           V AQF Y    +DDL         F+    + + S +D  W+     +  G    G+ P 
Sbjct: 10  VVAQFPYKSDYEDDL--------NFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPK 61

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 48.5 bits (115), Expect = 7e-07
 Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 48/222 (21%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSP 125
             A++++    DD+L        +F+ GDIL++++++ D NW++A  +   G  G IP  
Sbjct: 3   AIAKYDFKATADDEL--------SFKRGDILKVLNEECDQNWYKAELN---GKDGFIPKN 51

Query: 126 ELQEWRTACSTIDKTKHEQVNCSIFGRKKK--LYKDKYLAKHNAVFDQLDLVTYEEV--- 180
            ++            + +        R     L ++   A  +     L +    +V   
Sbjct: 52  YIEMKPHPWFFGKIPRAKAEEMLSKQRHDGAFLIRESESAPGD---FSLSVKFGNDVQHF 108

Query: 181 ---------VKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITV----- 226
                      L   K  +L  L  +       +N  I     +     P ++       
Sbjct: 109 KVLRDGAGKYFLWVVKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFD 168

Query: 227 ----------CSVMFQIISKDDHNWWQARKDNVAGSAGLIPS 258
                           ++   D NWW+       G  G+ P 
Sbjct: 169 PQEDGELGFRRGDFIHVMDNSDPNWWKGA---CHGQTGMFPR 207

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             +V+A F+++P +D         + F+ GD + ++   D NWW+       G  G+ P 
Sbjct: 158 PTYVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGA---CHGQTGMFPR 207

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           V A ++Y   ++D        ++F  G ++ +++KDD +WWQ   +   G  GL PS
Sbjct: 37  VIAMYDYAANNED-------ELSFSKGQLINVMNKDDPDWWQGEIN---GVTGLFPS 83

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 44.9 bits (107), Expect = 8e-07
 Identities = 9/57 (15%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A + + P +++        +  + GDI+ ++   + +WW+ +   +    G  P+
Sbjct: 10  YVALYKFVPQENE-------DLEMRPGDIITLLEDSNEDWWKGK---IQDRIGFFPA 56

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 44.4 bits (106), Expect = 9e-07
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 12/59 (20%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +V A + ++P  D DL          + GD +Q++ K    W++       G  G+ P+
Sbjct: 4   YVEALYQFDPQQDGDL--------GLKPGDKVQLLEKLSPEWYKGS---CNGRTGIFPA 51

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 44.9 bits (107), Expect = 9e-07
 Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            RA+F++              +  Q GDI+ I  + D NW++       G  G+ P 
Sbjct: 10  ARAKFDFKAQTLK-------ELPLQKGDIVYIYKQIDQNWYEGEHH---GRVGIFPR 56

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             +  F+Y P +DD        +  ++GDI++++ + +  WW+   +   G  G+ PS
Sbjct: 20  RCQVAFSYLPQNDD-------ELELKVGDIIEVVGEVEEGWWEGVLN---GKTGMFPS 67

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           VRA +++  ++D+        + F+ G+I+ ++   D NWW+          GL PS
Sbjct: 20  VRALYDFEAVEDN-------ELTFKHGEIIIVLDDSDANWWKGENH---RGIGLFPS 66

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A ++Y    DD        I+F   DI+  I   D  WW+       G  GL P+
Sbjct: 12  AIALYDYQAAGDD-------EISFDPDDIITNIEMIDDGWWRGVCK---GRYGLFPA 58

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            R +F++              +  Q GDI+ I  + D NW +       G  G+ P+
Sbjct: 4   ARLKFDFQAQSPK-------ELTLQKGDIVYIHKEVDKNWLEGEHH---GRLGIFPA 50

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           V A ++Y    +D        ++FQ G I+ +I K+D  W++     + G  GL P 
Sbjct: 20  VVAIYDYTKDKED-------ELSFQEGAIIYVIKKNDDGWYEGV---MNGVTGLFPG 66

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A ++Y    DD        I+F   DI+  I   D  WW+       G  GL P+
Sbjct: 20  AVALYDYQAAGDD-------EISFDPDDIITNIEMIDDGWWRGVCK---GRYGLFPA 66

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 10/60 (16%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           Q   R  +++ P +          + F+ GDI+ + ++ D NW++     + G +G  P 
Sbjct: 3   QPCCRGLYDFEPENQG-------ELGFKEGDIITLTNQIDENWYEGM---IHGESGFFPI 52

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +    +FNY    +D        ++   G  + ++ K    WW+   +   G  G  PS
Sbjct: 18  MPAYVKFNYMAERED-------ELSLIKGTKVIVMEKCSDGWWRGSYN---GQVGWFPS 66

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              +F+Y    DD        +   +G+I+  I K+D  WW+ + +   G  GL P 
Sbjct: 4   AIVEFDYQAQHDD-------ELTISVGEIITNIRKEDGGWWEGQIN---GRRGLFPD 50

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            +A  ++   DDD        + F+  DI+ IIS+ D + W    +   G  G  P+
Sbjct: 10  AKALLDFERHDDD-------ELGFRKNDIITIISQKDEHCWVGELN---GLRGWFPA 56

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            RA +++ P ++         + F+ GDI+ + ++ D NW++     + G +G  P 
Sbjct: 10  CRALYDFEPENEG-------ELGFKEGDIITLTNQIDENWYEGM---LHGHSGFFPI 56

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
             A+++YNP D       +A +    G  L +    D+  +++    +  G  GL+PS
Sbjct: 20  CVARYSYNPFDGPN-ENPEAELPLTAGKYLYVYGDMDEDGFYEGELLD--GQRGLVPS 74

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 14/63 (22%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-----DHNWWQARKDNVAGSAGL 121
              A F+Y    D+        +  + GD +Q++S+D     D  WW  +  +  G  G+
Sbjct: 31  VWTAVFDYEAAGDE-------ELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPS--GRVGV 81

Query: 122 IPS 124
            PS
Sbjct: 82  FPS 84

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A+FN+N             ++F+ G+ + ++ + D NW++ R        G+ P 
Sbjct: 10  AIAKFNFNGDTQV-------EMSFRKGERITLLRQVDENWYEGRI-PGTSRQGIFPI 58

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 65  QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
            I V A ++Y     DDL        +FQ GD + ++ +    WW+AR        G IP
Sbjct: 3   DIIVVALYDYVSWSPDDL--------SFQKGDQMVVLEESGE-WWKARS-LATRKEGYIP 52

Query: 124 S 124
           S
Sbjct: 53  S 53

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 9/60 (15%), Positives = 18/60 (30%), Gaps = 9/60 (15%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA--GLIPS 124
             +    Y     +        ++   G ++ I+ K+   WWQ            G  P+
Sbjct: 9   IAQVTSAYVASGSE-------QLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPA 61

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 9/59 (15%), Positives = 27/59 (45%), Gaps = 10/59 (16%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +   A +++  + +         +AF+ GD+++++   + +WW  +   +    G  P+
Sbjct: 11  VSAEAVWDHVTMANR-------ELAFKAGDVIKVLDASNKDWWWGQ---IDDEEGWFPA 59

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 8/58 (13%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-NWWQARKDNVAGSAGLIPS 124
            R  +++     +        +    G+I+ + + +    W + + +   G  GL+P+
Sbjct: 12  ARVMYDFAAEPGN------NELTVTEGEIITVTNPNVGGGWLEGKNNK--GEQGLVPT 61

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 44.0 bits (104), Expect = 2e-06
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 11/59 (18%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           F+    +Y                 F+ G+ L++IS +   WW+A      G    IP 
Sbjct: 19  FLAVLSDYPSPDISPP--------IFRRGEKLRVISDEGG-WWKAI-SLSTGRESYIPG 67

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 43.3 bits (103), Expect = 2e-06
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 11/59 (18%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIIS-KDDHNWWQARKDNVAGSAGLIPS 124
              Q+++     D+L          + GD + I+  K   +WW  +  + +G +GL+P+
Sbjct: 5   GIVQYDFMAESQDEL--------TIKSGDKVYILDDKKSKDWWMCQLVD-SGKSGLVPA 54

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 11/72 (15%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 68  VRAQFNYNP--LDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
             A +++       +L          + GDI+ I   +   W  A+  +     G +P+ 
Sbjct: 5   FEAAYDFPGSGSSSEL--------PLKKGDIVFISRDEPSGWSLAKLLD-GSKEGWVPTA 55

Query: 126 ELQEWRTACSTI 137
            +  ++   +T+
Sbjct: 56  YMTPYKDTRNTV 67

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           V   F  +P D D        +  + GDI+ IISK     W    +      G    
Sbjct: 14  VHTDFTPSPYDTD-------SLKLKKGDIIDIISKPPMGTWMGLLN---NKVGTFKF 60

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 12/58 (20%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           V A F+Y     +DL         FQ GDI+ ++SK +  W +       G  G+ P 
Sbjct: 8   VEALFSYEATQPEDL--------EFQEGDIILVLSKVNEEWLEGE---SKGKVGIFPK 54

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 11/59 (18%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIIS-KDDHNWWQARKDNVAGSAGLIPS 124
              Q+++     D+L          + GD + I+  K   +WW  +  + +G +GL+P+
Sbjct: 9   GIVQYDFMAESQDEL--------TIKSGDKVYILDDKKSKDWWMCQLVD-SGKSGLVPA 58

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A F++      +L         F+ GD++ ++S+ + +W +     V G+ G+ P 
Sbjct: 7   AEALFDFTGNSKLEL--------NFKAGDVIFLLSRINKDWLEGT---VRGATGIFPL 53

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 9/56 (16%), Positives = 22/56 (39%), Gaps = 11/56 (19%)

Query: 69  RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
                Y+    ++          + GDIL +++  + +WW+   +      G +P+
Sbjct: 4   PPLPPYSAGGREV--------TMKKGDILTLLNSTNKDWWKVEVN---DRQGFVPA 48

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            +A +++ P +D         + F+ GD++ + ++ D NW++     + G +G  P 
Sbjct: 16  CKALYDFEPENDG-------ELGFREGDLITLTNQIDENWYEGM---LHGQSGFFPL 62

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 42.5 bits (101), Expect = 4e-06
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 11/58 (18%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN-WWQARKDNVAGSAGLIPS 124
           + A + Y    DD        I+   GDI+ +I  DD + W     D   G  GL P+
Sbjct: 3   MEAIYAYEAQGDD-------EISIDPGDIITVIRGDDGSGWTYGECD---GLKGLFPT 50

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 13/59 (22%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              A + Y+ +   DL         F  G+ + +  KD   WW      +   +G+ PS
Sbjct: 10  EYIALYPYSSVEPGDL--------TFTEGEEILVTQKDG-EWWTGS---IGDRSGIFPS 56

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 43.0 bits (102), Expect = 4e-06
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            +A  NY   +          + F  GD++ +  + D NW+Q     + G +G+ P+
Sbjct: 10  AKALCNYRGKNPG-------DLKFNKGDVILLRRQLDENWYQGE---INGVSGIFPA 56

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 13/59 (22%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPS 124
             A++++    DD+L        +F+ GDIL++++++ D NW++A  +   G  G IP 
Sbjct: 12  AIAKYDFKATADDEL--------SFKRGDILKVLNEECDQNWYKAELN---GKDGFIPK 59

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 13/63 (20%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN----WWQARKDNVAGSAGL 121
           +  RA++++  + D+        I+F+ GD+L +  K+       W  A  D    + GL
Sbjct: 18  VVARAEYDFVAVSDE-------EISFRAGDMLNLALKEQQPKVRGWLLASLDG--QTTGL 68

Query: 122 IPS 124
           IP+
Sbjct: 69  IPA 71

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 42.5 bits (101), Expect = 5e-06
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            +  + Y   DDD        I    GD + ++++D  + W    ++  G  GL+P+
Sbjct: 4   NKVLYAYVQKDDD-------EITITPGDKISLVARDTGSGWTKINNDTTGETGLVPT 53

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 12/58 (20%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 68  VRAQFNYNP-LDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A+FN+N     ++        +F+ G+ + ++ + D NW++ R        G+ P 
Sbjct: 9   AIAKFNFNGDTQVEM--------SFRKGERITLLRQVDENWYEGRI-PGTSRQGIFPI 57

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A+++Y+  +D+        + F   D +  I   D +WW    +   GS GL PS
Sbjct: 3   ATAEYDYDAAEDN-------ELTFVENDKIINIEFVDDDWWLGELEK-DGSKGLFPS 51

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
            RA  +Y              +A   GD+++++ K +  WW  +        G IP+  L
Sbjct: 14  YRAIADYEKTSGS-------EMALSTGDVVEVVEKSESGWWFCQMK---AKRGWIPASFL 63

Query: 128 QE 129
           + 
Sbjct: 64  EP 65

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              A   Y  ++ D +           G+ +++I K    WW  RKD      G  PS
Sbjct: 83  PYVAIKAYTAVEGDEVS-------LLEGEAVEVIHKLLDGWWVIRKD---DVTGYFPS 130

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            RA ++Y+  D+D        ++F+ GD +  +   D  W         G  G++P+
Sbjct: 9   YRAMYDYSAQDED-------EVSFRDGDYIVNVQPIDDGWMYGT-VQRTGRTGMLPA 57

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 11/63 (17%)

Query: 63  ILQIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGL 121
           ++  FV A ++Y    + DL        +F+ G+ LQI++  + +WW A   +  G  G 
Sbjct: 1   MVTTFV-ALYDYESRTETDL--------SFKKGERLQIVNNTEGDWWLAHSLS-TGQTGY 50

Query: 122 IPS 124
           IPS
Sbjct: 51  IPS 53

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 42.2 bits (100), Expect = 5e-06
 Identities = 8/65 (12%), Positives = 23/65 (35%), Gaps = 11/65 (16%)

Query: 68  VRAQFNYNPLD--DDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP 125
             A +++       +L          + GD++ I  ++   W   +  +     G +P+ 
Sbjct: 3   FEAAYDFPGSGSPSEL--------PLKKGDVIYITREEPSGWSLGKLLD-GSKEGWVPTA 53

Query: 126 ELQEW 130
            ++  
Sbjct: 54  YMKPH 58

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A F++              + F+ GD++ ++S+ + +W +     V G+ G+ P 
Sbjct: 21  AEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGT---VRGATGIFPL 67

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAG 117
           +  V+A F+Y    +D        + F    I+Q + K +  WW+        
Sbjct: 6   KCAVKALFDYKAQRED-------ELTFIKSAIIQNVEKQEGGWWRGDYGGKKQ 51

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 41.8 bits (99), Expect = 9e-06
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 10/58 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
           VRA ++Y+  + D        ++F+ GD L  + + D+  W + R D+  G  GL P+
Sbjct: 6   VRALYDYDGQEQD-------ELSFKAGDELTKLGEEDEQGWCRGRLDS--GQLGLYPA 54

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 42.8 bits (101), Expect = 9e-06
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             AQ+ +    +  +        F+ G+ + +I K + NW++ R     G  G+ P+
Sbjct: 20  AVAQYTFKGDLEVELS-------FRKGEHICLIRKVNENWYEGRITG-TGRQGIFPA 68

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 12/60 (20%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPS 124
           +V A  +Y   +  L+       +F  GD+++++     +  W         G +GL P+
Sbjct: 10  YVIALRSYITDNCSLL-------SFHRGDLIKLLPVATLEPGWQFGS---AGGRSGLFPA 59

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 16/63 (25%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDH----NWWQARKDNVAGSAGL 121
              A + +     ++L        +      L+I+   D      WW A  +   G  G 
Sbjct: 15  VYFAVYTFKARNPNEL--------SVSANQKLKILEFKDVTGNTEWWLAEVN---GKKGY 63

Query: 122 IPS 124
           +PS
Sbjct: 64  VPS 66

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              +      D          +A ++GDI+++   + +  W+   +   G  GL P 
Sbjct: 21  AIQKRVPCAYDKT-------ALALEVGDIVKVTRMNINGQWEGEVN---GRKGLFPF 67

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 11/58 (18%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
            +A +      D         ++F  G +   +    +  W +   +   G  GLIP 
Sbjct: 13  AKALYACKAEHDS-------ELSFTAGTVFDNVHPSQEPGWLEGTLN---GKTGLIPE 60

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAG 117
           +  V+A F+Y    +D        + F    I+Q + K D  WW+        
Sbjct: 3   KSAVKALFDYKAQRED-------ELTFTKSAIIQNVEKQDGGWWRGDYGGKKQ 48

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 11/59 (18%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPS 124
             +A++++   D          ++ + GDI++I++K     WW+       G  G  PS
Sbjct: 7   TAKARYDFCARDRS-------ELSLKEGDIIKILNKKGQQGWWRGEIY---GRIGWFPS 55

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 32/192 (16%), Positives = 60/192 (31%), Gaps = 43/192 (22%)

Query: 69  RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP--E 126
           RA F++N  D++ +P       F+ GDIL+I  K +  WW A   +  G  G+IP P  E
Sbjct: 138 RALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE--DSEGKRGMIPVPYVE 188

Query: 127 LQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSF 186
                +A  +     +++ +        +       + +  + +  +   Y  V++    
Sbjct: 189 KYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVP 248

Query: 187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARK 246
                                         A  V + + V          +    W+   
Sbjct: 249 NAYD----------------------KTALALEVGELVKV-------TKINVSGQWEGE- 278

Query: 247 DNVAGSAGLIPS 258
               G  G  P 
Sbjct: 279 --CNGKRGHFPF 288

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 11/58 (18%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPS 124
              +++Y+ + DD        +  ++G+I++ + K  +  W +   +   G  G+ P 
Sbjct: 4   YIVEYDYDAVHDD-------ELTIRVGEIIRNVKKLQEEGWLEGELN---GRRGMFPD 51

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           I+ R      P   D     +  +A ++G+++++   +    W+   +   G  G  P 
Sbjct: 7   IYARVIQKRVPNAYD-----KTALALEVGELVKVTKINVSGQWEGECN---GKRGHFPF 57

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 14/62 (22%)

Query: 66  IFVRAQFNYNPL---DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLI 122
           +F +A     P       L        A ++GDI+++   + +  W+   +   G  GL 
Sbjct: 2   VFAKAIQKRVPCAYDKTAL--------ALEVGDIVKVTRMNINGQWEGEVN---GRKGLF 50

Query: 123 PS 124
           P 
Sbjct: 51  PF 52

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 15/65 (23%)

Query: 64  LQIFVRAQFNYNP-LDDDLIPCAQAGIAFQIGDILQIISKDDHN---WWQARKDNVAGSA 119
           L +  +A ++      D+L        +F+ GDI+ ++ +D      WW      + G  
Sbjct: 2   LNVLAKALYDNVAESPDEL--------SFRKGDIMTVLEQDTQGLDGWWLCS---LHGRQ 50

Query: 120 GLIPS 124
           G++P 
Sbjct: 51  GIVPG 55

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 42.4 bits (99), Expect = 2e-05
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 8/58 (13%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              A +N+              ++ QIGD+++I       W++          G+ P 
Sbjct: 61  HGVAIYNFQGSGAP-------QLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPK 110

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 13/62 (20%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK---DDHNWWQARKDNVAGSAGLI 122
           +  RA ++  P   D        +AF  GDIL I+ +   +   WW+       G  GL 
Sbjct: 8   LLARALYDNCPDCSD-------ELAFSRGDILTILEQHVPESEGWWKCLLH---GRQGLA 57

Query: 123 PS 124
           P+
Sbjct: 58  PA 59

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 11/61 (18%)

Query: 65  QIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIP 123
           +I V A ++Y  +  +DL        +FQ GD + ++ +    WW+AR        G IP
Sbjct: 8   RIIVVALYDYEAIHHEDL--------SFQKGDQMVVLEESGE-WWKAR-SLATRKEGYIP 57

Query: 124 S 124
           S
Sbjct: 58  S 58

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 61  GDILQIFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA 119
           G  ++  VRA   Y  + D D I       +F  GD+  + ++ +  W            
Sbjct: 1   GSHMRRRVRAILPYTKVPDTDEI-------SFLKGDMFIVHNELEDGWMWVTNLR-TDEQ 52

Query: 120 GLIPS 124
           GLI  
Sbjct: 53  GLIVE 57

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 14/61 (22%)

Query: 67  FVRAQFNYNP-LDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIP 123
           + R  F Y    +D+L         F+ G+I+ +ISK+  +  WW+   +   G  G+ P
Sbjct: 8   YCRTLFPYTGTNEDEL--------TFREGEIIHLISKETGEAGWWKGELN---GKEGVFP 56

Query: 124 S 124
            
Sbjct: 57  D 57

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 9/48 (18%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKD 113
            V A ++Y      ++          + GDIL +++  + +WW+   +
Sbjct: 23  LVLALYDYQEKSPREV--------TMKKGDILTLLNSTNKDWWKVEVN 62

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 9/62 (14%)

Query: 66  IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQAR---KDNVAGSAGLI 122
           + VRA  ++  L D         +  + GD++ ++ +     W+             G  
Sbjct: 19  LKVRALKDFWNLHDP------TALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYF 72

Query: 123 PS 124
           P 
Sbjct: 73  PP 74

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 43.7 bits (102), Expect = 3e-05
 Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 9/72 (12%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A   +  G  G+IP 
Sbjct: 136 AEYVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAE--DSEGKRGMIPV 186

Query: 125 PELQEWRTACST 136
           P ++++R A ++
Sbjct: 187 PYVEKYRPASAS 198

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 10/57 (17%), Positives = 18/57 (31%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
               F Y    +D        ++   G  + ++      WW+   +   G  G  PS
Sbjct: 4   AFVXFAYVAERED-------ELSLVXGSRVTVMEXCSDGWWRGSYN---GQIGWFPS 50

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            +  +A  ++    D+        + F   DI+ ++ + + NWW      V G  G  P 
Sbjct: 10  NLKAQALCSWTAKKDN-------HLNFSKHDIITVLEQQE-NWWFGE---VHGGRGWFPK 58

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 12/60 (20%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPS 124
             RA + +   + D        ++F  GDI+Q+  K   +  W         G+ G  P 
Sbjct: 7   GYRALYPFEARNHD-------EMSFNSGDIIQVDEKTVGEPGWLYGSFQ---GNFGWFPC 56

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 10/86 (11%)

Query: 53  QAGIAFQIGDILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK 112
           Q  I   I D   +   A +++  +DD  +        F+ GD+++++   +  WW    
Sbjct: 18  QLAINELISDGSVVCAEALWDHVTMDDQELG-------FKAGDVIEVMDATNREWW---W 67

Query: 113 DNVAGSAGLIPSPELQEWRTACSTID 138
             VA   G  P+  ++         D
Sbjct: 68  GRVADGEGWFPASFVRLRVNQDEPAD 93

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 40.4 bits (95), Expect = 4e-05
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 9/58 (15%)

Query: 68  VRAQFNYN-PLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           VRA   Y    D D I       +F  GD+  + ++ +  W            GLI  
Sbjct: 10  VRAILPYTKVPDTDEI-------SFLKGDMFIVHNELEDGWMWVTNLR-TDEQGLIVE 59

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 15/62 (24%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISK---DDHNWWQARKDNVAGSAGLI 122
           FV+A ++Y    DD+L        +F  G I++I++K   DD  +W+       G  G+ 
Sbjct: 10  FVKALYDYEGQTDDEL--------SFPEGAIIRILNKENQDDDGFWEGE---FNGRIGVF 58

Query: 123 PS 124
           PS
Sbjct: 59  PS 60

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPS 124
           + +  F Y   +DD        +  + GDI+ +I+KD  D  WW+     + G  G+ P 
Sbjct: 4   YCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGE---LNGRRGVFPD 53

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPS 124
           + +  F Y   +DD        +  + GDI+ +I+KD  D  WW+     + G  G+ P 
Sbjct: 9   YCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGE---LNGRRGVFPD 58

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 14/60 (23%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDD--HNWWQARKDNVAGSAGLIPS 124
             A +++      DL         F+ GD++ I+ K D  ++WW  R +   G  G+ P+
Sbjct: 6   AVALYSFAGEESGDL--------PFRKGDVITILKKSDSQNDWWTGRVN---GREGIFPA 54

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 12/62 (19%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLI 122
           + + +  F Y   +DD        +  + GDI+ +I+KD  D  WW+     + G  G+ 
Sbjct: 9   KDYCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGE---LNGRRGVF 58

Query: 123 PS 124
           P 
Sbjct: 59  PD 60

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 14/60 (23%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDD--HNWWQARKDNVAGSAGLIPS 124
           V A +++      DL         FQ GD + +ISK D   +WW+ +   + G  G+ P+
Sbjct: 20  VTALYSFEGQQPGDL--------NFQAGDRITVISKTDSHFDWWEGK---LRGQTGIFPA 68

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 89  IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +  + GDIL +++  + +WW+   +      G +P+
Sbjct: 8   VTMKKGDILTLLNSTNKDWWKVEVN---DRQGFVPA 40

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            RA F + P  +D        +  ++ D L +  + +  W++A  +   G+ G+ P+
Sbjct: 9   HRAIFRFVPRHED-------ELELEVDDPLLVELQAEDYWYEAY-NMRTGARGVFPA 57

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 23/191 (12%), Positives = 54/191 (28%), Gaps = 43/191 (22%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
             A F++              + F+ GD++ ++S+ + +W +     V G+ G+ P   +
Sbjct: 177 AEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGT---VRGATGIFPLSFV 226

Query: 128 QEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFK 187
           +          +          +  +  +   K +A              E++   P  K
Sbjct: 227 KI----LKDFPEEDDPTNWLRCYYYEDTISTIKDIAVE------------EDLSSTPLLK 270

Query: 188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKD 247
               +        RR  +          Y       + +       +S +D      +  
Sbjct: 271 DLLELT-------RREFQR---EDIALNYRDAEGDLVRL-------LSDEDVALMVRQAR 313

Query: 248 NVAGSAGLIPS 258
            +     L P 
Sbjct: 314 GLPSQKRLFPW 324

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK--DDHNWWQARKDNVAGSAGLIPS 124
             A++N+   D          ++ + GD+++I S+   D  WW+       G  G  PS
Sbjct: 10  AVARYNFAARDMR-------ELSLREGDVVRIYSRIGGDQGWWKGE---TNGRIGWFPS 58

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 9/57 (15%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           V     +     D        +  Q  D++ ++ ++D  W    +    G  G  P 
Sbjct: 20  VEITKAFFAKQAD-------EVTLQQADVVLVLQQED-GWLYGER-LRDGETGWFPE 67

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 17/122 (13%), Positives = 35/122 (28%), Gaps = 20/122 (16%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS-- 124
              A +N+              ++ QIGD+++I       W++          G+ P   
Sbjct: 19  HGVAIYNFQGSGAP-------QLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSF 70

Query: 125 --------PELQEWRTACSTIDKTKHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVT 176
                    + +              E            ++K  Y+A     F Q+  + 
Sbjct: 71  IHIKEVTVEKRRNTENIIPAEIPLAQEVTTT--LWEWGSIWKQLYVASKKERFLQVQSMM 128

Query: 177 YE 178
           Y+
Sbjct: 129 YD 130

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 11/59 (18%)

Query: 67  FVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              A +++    D+ L        +   G+ L+++  + +  W   +       G +PS
Sbjct: 45  LFVALYDFVASGDNTL--------SITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPS 93

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 8/58 (13%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQII-SKDDHNWWQARKDNVAGSAGLIPS 124
           V+A F++   D+         ++F+ GD++ ++  +    W     +      G  P 
Sbjct: 10  VKAIFSHAAGDNS------TLLSFKEGDLITLLVPEARDGWHYGESEK-TKMRGWFPF 60

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 8/36 (22%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 89  IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +  + GDIL +++  + +WW+   +      G +P+
Sbjct: 6   VTMKKGDILTLLNSTNKDWWKVEVN---DRQGFVPA 38

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 12/59 (20%)

Query: 68  VRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPS 124
             A++N++   + DL         F  GD+L I++   D NW++A+  N  G  G+IP+
Sbjct: 14  CIAKYNFHGTAEQDL--------PFCKGDVLTIVAVTKDPNWYKAK--NKVGREGIIPA 62

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            RA F + P  +D        +  ++ D L +  + +  W++A      G+ G+ P+
Sbjct: 6   HRAIFRFVPRHED-------ELELEVDDPLLVELQAEDYWYEAYN-MRTGARGVFPA 54

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 8/57 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A ++Y    +  +        F+ G+ LQI++  + +WW A   +  G  G IPS
Sbjct: 88  FVALYDYESRTETDLS-------FKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPS 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	352
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	100.0
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	100.0
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	100.0
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.96
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.96
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	99.92
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	99.91
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	99.84
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	99.66
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	99.41
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.4
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	99.4
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.37
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.34
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.32
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.31
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	99.3
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.29
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.27
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.25
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.25
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.89
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.23
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.21
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.19
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.19
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.17
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	99.17
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.16
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.14
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.13
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.13
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.13
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.13
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.13
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.13
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.12
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.12
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.12
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.12
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.12
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.12
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.11
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.11
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.11
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.11
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.11
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.11
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.11
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.11
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.11
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.1
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.1
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.1
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.1
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.1
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.1
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.09
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.09
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.09
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.09
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.09
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.09
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.09
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.09
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.08
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.08
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.08
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.08
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.08
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.08
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.08
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.08
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.07
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.07
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.07
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.07
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.07
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.07
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.07
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.07
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.07
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.06
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.06
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.06
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.06
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.06
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.06
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.06
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.06
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.06
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.06
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.06
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.06
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.06
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.06
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.05
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.05
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.05
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.05
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.05
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.05
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.05
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.05
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.04
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.04
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.04
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.04
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.04
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.04
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.04
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.03
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.03
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.03
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.03
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.03
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.03
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.03
3u23_A	65	CD2-associated protein; structural genomics, struc	99.03
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.03
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.03
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.02
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.02
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.02
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.02
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.02
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.02
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.02
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.02
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.02
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.02
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.02
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.02
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.01
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.01
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.01
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.01
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.01
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.01
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.01
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.01
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.01
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.01
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.01
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.01
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.01
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.0
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.0
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.0
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.0
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.0
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.0
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.0
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.0
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.0
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.0
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.0
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	98.99
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	98.99
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	98.99
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	98.99
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	98.98
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	98.98
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	98.98
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	98.98
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	98.97
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	98.97
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	98.96
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	98.96
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	98.95
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	98.95
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	98.95
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	98.94
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	98.94
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	98.94
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	98.93
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	98.92
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	98.92
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	98.91
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	98.9
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	98.89
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	98.89
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	98.87
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	98.87
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	98.86
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	98.86
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	98.85
1u3o_A	82	Huntingtin-associated protein-interacting protein;	98.85
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	98.84
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	98.84
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	98.83
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	98.8
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	98.79
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	98.77
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	98.76
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	98.74
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.7
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	98.69
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.65
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	98.64
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	98.63
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	98.59
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.57
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.56
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.55
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.54
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.52
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	98.5
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.49
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	98.47
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	98.44
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.39
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.38
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.35
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.35
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.34
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	98.3
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	97.63
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	98.28
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.26
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.19
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.17
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.12
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.07
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.01
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	97.95
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.85
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.82
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	97.82
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.78
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	97.76
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	97.66
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	97.58
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	97.56
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	97.54
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	97.53
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	97.43
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	97.34
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.32
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	97.29
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	97.26
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	97.24
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	97.23
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	97.22
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	97.21
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	97.2
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	97.19
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	97.19
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	97.18
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	97.18
1awj_A	77	ITK; transferase, regulatory intramolecular comple	97.17
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	97.16
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	97.15
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	97.15
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	97.15
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	97.14
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	97.14
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	97.12
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	97.12
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	97.11
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	97.11
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	97.09
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	97.08
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	97.07
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	97.07
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.07
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	97.06
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	97.06
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	97.05
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	97.05
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	97.04
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	97.04
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	97.04
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	97.03
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	97.02
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	97.02
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	97.01
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	97.01
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	97.0
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	96.97
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	96.96
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	96.96
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	96.96
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	96.95
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	96.95
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	96.95
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	96.94
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	96.94
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	96.94
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	96.93
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	96.92
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	96.91
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	96.91
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	96.91
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	96.9
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	96.87
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.87
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	96.87
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	96.87
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	96.86
1i07_A	60	Epidermal growth factor receptor kinase substrate	96.86
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	96.86
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	96.86
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	96.85
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	96.85
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	96.84
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	96.82
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	96.82
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	96.82
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	96.81
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	96.8
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	96.8
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	96.79
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	96.78
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	96.78
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	96.78
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	96.78
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	96.77
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	96.77
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	96.77
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	96.77
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	96.76
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	96.76
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	96.75
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	96.75
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	96.75
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	96.75
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	96.75
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	96.75
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	96.74
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	96.74
3u23_A	65	CD2-associated protein; structural genomics, struc	96.74
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	96.73
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	96.73
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	96.72
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	96.72
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	96.71
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	96.71
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	96.71
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	96.71
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	96.7
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	96.7
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	96.7
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	96.69
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	96.69
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	96.69
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	96.68
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	96.68
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	96.68
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	96.66
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	96.66
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	96.66
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	96.65
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	96.64
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	96.64
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	96.64
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	96.63
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	96.62
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	96.62
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	96.61
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	96.61
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	96.6
1wxb_A	68	Epidermal growth factor receptor pathway substrate	96.6
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	96.6
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	96.6
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	96.59
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	96.59
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	96.59
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	96.58
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	96.57
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	96.55
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	96.54
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	96.54
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	96.54
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	96.53
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	96.53
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	96.52
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	96.51
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	96.51
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	96.51
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	96.5
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	96.5
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	96.49
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	96.47
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	96.47
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	96.46
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	96.43
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	96.42
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	96.4
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	96.39
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	96.37
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	96.37
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	96.27
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	96.26
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	96.24
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.23
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	96.23
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	96.19
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	96.15
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	96.14
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	96.1
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	96.07
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	96.0
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	96.0
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	95.94
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	95.93
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	95.91
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	95.91
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	95.89
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	95.83
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	95.8
1u3o_A	82	Huntingtin-associated protein-interacting protein;	95.77
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	95.74
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	95.69
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	95.65
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	95.64
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	95.59
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	95.55
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	95.54
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	95.3
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	95.29
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	95.11
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	95.05
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	95.04
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	95.03
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	94.67
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	94.63
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	94.56
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	94.48
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	94.37
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	94.36
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	94.3
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	94.26
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.2
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	94.19
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	94.18
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	94.16
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	94.1
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	94.05
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.03
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	93.96
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	93.81
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	93.75
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	93.72
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	93.54
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	93.51
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	93.51
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	93.37
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	93.2
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	93.19
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	93.12
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	93.12
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	93.08
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	92.94
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	92.88
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	92.85
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	92.75
2vli_A	183	Antibiotic resistance protein; transferase, tunica	92.71
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	92.69
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	92.56
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	92.5
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	92.48
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	92.44
1via_A	175	Shikimate kinase; structural genomics, transferase	92.34
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	92.34
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	92.22
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	92.15
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	92.14
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	92.14
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	92.13
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	92.12
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	91.82
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	91.8
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	91.76
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	91.75
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	91.73
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	91.68
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	91.66
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	91.65
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	91.49
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	91.45
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	91.34
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	91.22
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	91.14
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	91.12
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	91.06
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	91.04
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	91.03
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	90.95
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	90.88
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	90.83
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	90.82
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	90.81
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	90.73
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	90.72
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	90.59
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	90.5
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	90.48
3bos_A	242	Putative DNA replication factor; P-loop containing	90.36
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	90.28

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=100.00  E-value=1.5e-41  Score=326.53  Aligned_cols=181  Identities=32%  Similarity=0.589  Sum_probs=144.5

Q ss_pred             eeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC---CCceeeecCChhHHHHhhhcccccc
Q psy12793         64 LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV---AGSAGLIPSPELQEWRTACSTIDKT  140 (352)
Q Consensus        64 lqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~---~g~~GlIPS~~v~e~r~a~~~~~~~  140 (352)
                      ..+||||+|||+|..|+++||+  ||+|++||||||+++.|.+||||++++.   +.++|+|||+.+++++...+..   
T Consensus         4 ~s~yvRa~fdY~~~~D~~~P~~--gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~~e~~~~~~~~---   78 (292)
T 3tvt_A            4 RSLYVRALFDYDPNRDDGLPSR--GLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRWERKMRARDR---   78 (292)
T ss_dssp             -CCEEEECSCBCC-----------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHHHHHHHHHC------
T ss_pred             ceEEEEEeccCCCCCCCCCCCC--cCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChHHHHHHHHHhhc---
Confidence            3589999999999999999996  7999999999999999999999999754   4458999999988866543110   


Q ss_pred             ccccccccccccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccc
Q psy12793        141 KHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV  220 (352)
Q Consensus       141 ~~~~~~~~~~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v  220 (352)
                                                ......++++||+|++++++.+|||||+||+   |+||.++|+.++|+.|.+++
T Consensus        79 --------------------------~~~~~~~~~~YE~V~~~~~~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sV  129 (292)
T 3tvt_A           79 --------------------------SVKSEENVLSYEAVQRLSINYTRPVIILGPL---KDRINDDLISEYPDKFGSCV  129 (292)
T ss_dssp             ---------------------------------CCCEEEEEEEECSSCCCEEEESTT---HHHHHHHHHHHCTTTEECCC
T ss_pred             --------------------------cccccccccchheEEeccCCCCCeEEEeCCC---HHHHHHHHHHhChhhccccc
Confidence                                      0012346789999999999999999999995   99999999999999999999


Q ss_pred             cccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCC
Q psy12793        221 PQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPR  300 (352)
Q Consensus       221 ~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~  300 (352)
                      ++                                                                        |||+||
T Consensus       130 s~------------------------------------------------------------------------TTR~pR  137 (292)
T 3tvt_A          130 PH------------------------------------------------------------------------TTRPKR  137 (292)
T ss_dssp             CE------------------------------------------------------------------------ECSCCC
T ss_pred             cC------------------------------------------------------------------------CccCCc
Confidence            99                                                                        999999


Q ss_pred             CCCcCCcceEEe-cHHHHHHHHHcCcEEEEEeecc-----ChhhHHHHHHcCcccc
Q psy12793        301 SDEENGRAYYFI-SHDEMMSDIAANQYLEYGKSIL-----THPSQRHIVSCRKLVV  350 (352)
Q Consensus       301 ~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  350 (352)
                      ++|.||++|||| |+++|+.+|+++.||||++...     ...+++.+++.|+.||
T Consensus       138 ~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~YGT~~~~V~~~~~~gk~vi  193 (292)
T 3tvt_A          138 EYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCI  193 (292)
T ss_dssp             TTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHHTCEEE
T ss_pred             CCccCCccccccCCHHHHHHHHhcCceEEEEEEccceeEEehHHHHHHHHcCCcEE
Confidence            999999999999 9999999999999999998765     4578999999999876

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=100.00  E-value=1.2e-36  Score=292.09  Aligned_cols=188  Identities=29%  Similarity=0.542  Sum_probs=158.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCC---CceeeecCChhHHHHhhhcccccccc
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA---GSAGLIPSPELQEWRTACSTIDKTKH  142 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~---g~~GlIPS~~v~e~r~a~~~~~~~~~  142 (352)
                      ++++|+|||++..++.+|+  ++|+|++||||+|+++.|++||+|+..+..   ++.|+|||+|+++++...+...    
T Consensus         2 ~~vrAlydy~~~~~~~~p~--~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~~~~~~~~~----   75 (295)
T 1kjw_A            2 FYIRALFDYDKTKDCGFLS--QALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLKA----   75 (295)
T ss_dssp             EEEEESSCBCHHHHHCCCS--SBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHHHHTSCC-----
T ss_pred             EEEEEeeccCCCCCCCCCC--cCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHHHHHhhhcc----
Confidence            5799999999998888885  689999999999999999999999986532   4789999999998765432100    


Q ss_pred             ccccccccccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccc
Q psy12793        143 EQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQ  222 (352)
Q Consensus       143 ~~~~~~~~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~  222 (352)
                           ..|.           .+.++..+...+++||+|.++++..+|+|||+||   ||+||.++|++.+|+.|.+++++
T Consensus        76 -----~~~~-----------~~~~~~~~~~~~~~Ye~V~~~~~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~  136 (295)
T 1kjw_A           76 -----KDWG-----------SSSGSQGREDSVLSYETVTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPH  136 (295)
T ss_dssp             -------CC-----------SCCSSCCCCCCCCCEEEEEEEECCSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCE
T ss_pred             -----cccC-----------cccccccccCCCCCcceeeeecCCCCCEEEEECC---CHHHHHHHHHhhCccceeeeeee
Confidence                 0011           1112234556789999999999889999999999   59999999999999889999999


Q ss_pred             cccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCCCC
Q psy12793        223 FITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSD  302 (352)
Q Consensus       223 ~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~  302 (352)
                                                                                              |||+||++
T Consensus       137 ------------------------------------------------------------------------TTR~~R~g  144 (295)
T 1kjw_A          137 ------------------------------------------------------------------------TTRPKREY  144 (295)
T ss_dssp             ------------------------------------------------------------------------ECSCCCTT
T ss_pred             ------------------------------------------------------------------------cccCCCCc
Confidence                                                                                    99999999


Q ss_pred             CcCCcceEEe-cHHHHHHHHHcCcEEEEEeecc-----ChhhHHHHHHcCcccc
Q psy12793        303 EENGRAYYFI-SHDEMMSDIAANQYLEYGKSIL-----THPSQRHIVSCRKLVV  350 (352)
Q Consensus       303 e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  350 (352)
                      |.||++|||| |+++|+.+|++++||||++...     ...+++.++..|+.||
T Consensus       145 E~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vi  198 (295)
T 1kjw_A          145 EIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCI  198 (295)
T ss_dssp             CCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEE
T ss_pred             cccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEE
Confidence            9999999999 9999999999999999998765     4567899999999875

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=100.00  E-value=1.3e-33  Score=299.07  Aligned_cols=190  Identities=28%  Similarity=0.531  Sum_probs=161.3

Q ss_pred             eeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC---CCceeeecCChhHHHHhhhcccccc
Q psy12793         64 LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV---AGSAGLIPSPELQEWRTACSTIDKT  140 (352)
Q Consensus        64 lqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~---~g~~GlIPS~~v~e~r~a~~~~~~~  140 (352)
                      ..+|+||+|||++..|+.+|+  ++|+|++||||+|+++.|.+||+|++.+.   .+..|+|||+|+++++...+...  
T Consensus       426 ~~~~vrAl~dy~~~~d~~~p~--~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~~~~~~~~~--  501 (721)
T 2xkx_A          426 RGFYIRALFDYDKTKDCGFLS--QALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSRLKA--  501 (721)
T ss_pred             cceeEEEeeccCcCCCCCCcc--ccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHHHHhhhccc--
Confidence            357999999999999999996  57999999999999999999999998754   35689999999998765432100  


Q ss_pred             ccccccccccccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccc
Q psy12793        141 KHEQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPV  220 (352)
Q Consensus       141 ~~~~~~~~~~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v  220 (352)
                             ..|..           +.+..++...+++||+|.++++..+|+|||+||+   |+||.++|+..+|+.|.+++
T Consensus       502 -------~~~~~-----------~~~~~~~~~~~~~Ye~V~~~~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~v  560 (721)
T 2xkx_A          502 -------KDWGS-----------SSGSQGREDSVLSYETVTQMEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCV  560 (721)
T ss_pred             -------ccccC-----------cchhhcccccCCCceeeecccCCCCCEEEEECCC---HHHHHHHHHHhCccceeecc
Confidence                   01111           1122345667899999999999999999999995   99999999999999999999


Q ss_pred             cccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCC
Q psy12793        221 PQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPR  300 (352)
Q Consensus       221 ~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~  300 (352)
                      ++                                                                        |||+||
T Consensus       561 s~------------------------------------------------------------------------TTR~~r  568 (721)
T 2xkx_A          561 PH------------------------------------------------------------------------TTRPKR  568 (721)
T ss_pred             cc------------------------------------------------------------------------cccCCC
Confidence            99                                                                        999999


Q ss_pred             CCCcCCcceEEe-cHHHHHHHHHcCcEEEEEeecc-----ChhhHHHHHHcCcccc
Q psy12793        301 SDEENGRAYYFI-SHDEMMSDIAANQYLEYGKSIL-----THPSQRHIVSCRKLVV  350 (352)
Q Consensus       301 ~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  350 (352)
                      ++|.||++|||| |+++|+.+|++++||||++...     ...+++.+++.|+.||
T Consensus       569 ~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~i  624 (721)
T 2xkx_A          569 EYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCI  624 (721)
T ss_pred             CCccCCceeEEecCHHHHHHHHhcCCceEEEEECCccceeeHHHHHHHHHCCCcEE
Confidence            999999999999 9999999999999999998765     4577999999999875

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.96  E-value=2.9e-29  Score=254.87  Aligned_cols=176  Identities=17%  Similarity=0.252  Sum_probs=116.9

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeec---cCCCceEEEEcCCCC---ceeeecCChhHHHHhhhcccc
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK---DDHNWWQARKDNVAG---SAGLIPSPELQEWRTACSTID  138 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~---~D~~WWqaR~~~~~g---~~GlIPS~~v~e~r~a~~~~~  138 (352)
                      .+|+||+|||++..+       .+|+|++||||+|+++   .|.+||+|++++..+   +.|+|||+|+++++.+.+...
T Consensus        98 s~yVralfdy~~~~~-------~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~  170 (468)
T 3shw_A           98 SFYIRTHFEYEKESP-------YGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTL  170 (468)
T ss_dssp             CEEEEECSCBCCSST-------TBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHC-
T ss_pred             ccccccccCcCCCCC-------CCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHHHHHHHhhhh
Confidence            579999999999763       3799999999999999   688999999976544   689999999999876654321


Q ss_pred             ccccccccccccc-----cccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        139 KTKHEQVNCSIFG-----RKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       139 ~~~~~~~~~~~~~-----rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ........+++++     ..+| .+.+...+.+..+++..+++||+|++++++.+|||||+||||+|   |+++|++++|
T Consensus       171 ~~~~~~~~~~f~~~~~~r~~kk-~~~~~~~~~~~~~~~~~~~~YEeV~~~~~~~~r~iVlsGPsG~G---l~~~Ll~~~p  246 (468)
T 3shw_A          171 PKTAGGDRADFWRFRGLRSSKR-NLRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIADV---AREKLAREEP  246 (468)
T ss_dssp             -------------------------------------CCCCCSEEEEEEECCSSCCCEEEESTTHHH---HHHHHHHHCT
T ss_pred             hccccccccchhhhcccccccc-ccccchhhcccccccccCCCcceeEcccCCCCCEEEEECCCHHH---HHHHHHHhCC
Confidence            1000011112211     1111 11122344566778889999999999999999999999999988   9999999999


Q ss_pred             CCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhhccccccccccccccCCcccccc
Q psy12793        214 DKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRR  293 (352)
Q Consensus       214 ~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (352)
                      ++|.+   .                                                                       
T Consensus       247 ~~f~s---~-----------------------------------------------------------------------  252 (468)
T 3shw_A          247 DIYQI---A-----------------------------------------------------------------------  252 (468)
T ss_dssp             TTEEE---C-----------------------------------------------------------------------
T ss_pred             Cceee---e-----------------------------------------------------------------------
Confidence            98854   4                                                                       


Q ss_pred             ccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEE
Q psy12793        294 DTTRSPRSDEENGRAYYFISHDEMMSDIAANQYL  327 (352)
Q Consensus       294 ~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  327 (352)
                       ||| ||++|.||++|||++.+..+..+++|+-.
T Consensus       253 -~TR-pR~gE~dG~~Y~FTs~~~V~~vl~~Gk~~  284 (468)
T 3shw_A          253 -KSE-PRDAGTDQRSSGIIRLHTIKQIIDQDKHA  284 (468)
T ss_dssp             -CCB-C----------CBCCHHHHHHHHTTTCEE
T ss_pred             -cCC-CCCcccccccCCcccHHHHHHHHHCCCeE
Confidence             689 99999999999999999999998888753

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.96  E-value=7.9e-29  Score=246.37  Aligned_cols=176  Identities=18%  Similarity=0.247  Sum_probs=121.8

Q ss_pred             eeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeec---cCCCceEEEEcCCCC---ceeeecCChhHHHHhhhccc
Q psy12793         64 LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK---DDHNWWQARKDNVAG---SAGLIPSPELQEWRTACSTI  137 (352)
Q Consensus        64 lqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~---~D~~WWqaR~~~~~g---~~GlIPS~~v~e~r~a~~~~  137 (352)
                      ..+|+||+|||++.++       .+|+|++||||+|+++   .|.+||+|++++..+   ..|+|||+|+++++.+.+..
T Consensus       105 ~~~~vral~dy~~~~~-------~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e~~~~~~~~  177 (391)
T 3tsz_A          105 DSFYIRTHFEYEKESP-------YGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYT  177 (391)
T ss_dssp             CCEEEEECSCBCCSST-------TBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHHHHHSSCCC
T ss_pred             cccccccccccCCCCC-------CcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHHHHHHHHhh
Confidence            3579999999999654       3799999999999999   688999999976532   58999999999988765432


Q ss_pred             c-cccccc-cc--cc-ccccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        138 D-KTKHEQ-VN--CS-IFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       138 ~-~~~~~~-~~--~~-~~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      . ...... ..  |. .++++++. ..+.....+..++...+++||+|++++++.+|||||+||||   +||+++|++.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~k~~-~~k~~~~~~~~~~~~~~~~YE~V~~~~~~~~r~iVlsGPsg---~tl~~~L~~~~  253 (391)
T 3tsz_A          178 LPKTAGGDRADFWRFRGLRSSKRN-LRKSREDLSAQPVQTKFPAYERVVLREAGFLRPVTIFGPIA---DVAREKLAREE  253 (391)
T ss_dssp             ----------------------------------------CCCSEEEEEEEECSSCCCEEEESTTH---HHHHHHHHHHC
T ss_pred             hccccccccccccccccccccccc-ccccccccccccccccCCCcceEECcCCCCCCEEEEECCCH---HHHHHHHHhhC
Confidence            1 111000 11  10 11111111 01111223444567789999999999999999999999998   79999999999


Q ss_pred             CCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccc
Q psy12793        213 PDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYR  292 (352)
Q Consensus       213 p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (352)
                      |++|..                                                                          
T Consensus       254 p~~~~~--------------------------------------------------------------------------  259 (391)
T 3tsz_A          254 PDIYQI--------------------------------------------------------------------------  259 (391)
T ss_dssp             TTTEEE--------------------------------------------------------------------------
T ss_pred             cccccc--------------------------------------------------------------------------
Confidence            998742                                                                          


Q ss_pred             cccCCCCCCCCcCCcceEEecHHHHHHHHHcCcE
Q psy12793        293 RDTTRSPRSDEENGRAYYFISHDEMMSDIAANQY  326 (352)
Q Consensus       293 ~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  326 (352)
                        |||.||++|.||++||||+.+..+..+++|+-
T Consensus       260 --~tr~pR~gE~dG~~Y~Fv~~~~V~~~~~~Gk~  291 (391)
T 3tsz_A          260 --AKSEPRDAGTDQRSSGIIRLHTIKQIIDQDKH  291 (391)
T ss_dssp             --CCCCCCCSSSCCC--CCCCHHHHHHHHTTTCE
T ss_pred             --ccCCCCCcccCCccCCcCcHHHHHHHHHcCCE
Confidence              57889999999999999999998888888775

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=99.92  E-value=2.4e-26  Score=224.46  Aligned_cols=193  Identities=20%  Similarity=0.260  Sum_probs=120.1

Q ss_pred             ceeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhhhcccccccc
Q psy12793         63 ILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKH  142 (352)
Q Consensus        63 ilqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a~~~~~~~~~  142 (352)
                      ...+++||+|||+|..|+++||++++|+|++||||+|+++.|++||+||.++..+..|||||+...|..+..... +.+.
T Consensus        36 ~~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~~~E~~~~~~~~-~~~~  114 (337)
T 4dey_A           36 PVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQ-RAKE  114 (337)
T ss_dssp             CCCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHHHHHHHHHHH-HCC-
T ss_pred             CccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHHHHHHHHHhhhh-cccc
Confidence            345899999999999999999999999999999999999999999999998766789999999976655443211 1111


Q ss_pred             ccccccccccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhH---HHHHHHhhCCCCcccc
Q psy12793        143 EQVNCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRH---IKNTLINKFPDKYAYP  219 (352)
Q Consensus       143 ~~~~~~~~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~t---l~~~L~~~~p~~F~~~  219 (352)
                           ..+..+++ ++.+|  +.     .+.+++||+|-     ..|||||+||+++|...   +.+.|+...+..|+..
T Consensus       115 -----~~~~~~~~-~~~~~--~k-----~~~~~~Ye~vp-----~~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~  176 (337)
T 4dey_A          115 -----FKLHSKEK-RMPFF--KK-----TEHTPPYDVVP-----SMRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGR  176 (337)
T ss_dssp             -------------------------------CCSEEEEC-----SSCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTS
T ss_pred             -----CCCCcccc-ccccc--cc-----CCCCCCccccC-----CCCceEEECCccccchhHHHHHHHHHHhhHHhcCCc
Confidence                 01111111 22222  11     15678999994     56999999999999874   4556666666666666


Q ss_pred             ccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhhccccccccccccccCCccccccccCCCC
Q psy12793        220 VPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSP  299 (352)
Q Consensus       220 v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~  299 (352)
                      ++.                                                                         ||.+
T Consensus       177 i~~-------------------------------------------------------------------------tR~~  183 (337)
T 4dey_A          177 ISI-------------------------------------------------------------------------TRVT  183 (337)
T ss_dssp             EEE-------------------------------------------------------------------------EEEC
T ss_pred             cce-------------------------------------------------------------------------Eeec
Confidence            644                                                                         3545


Q ss_pred             CCCCcCCcce--EEecHHHHHHHHHcCcEEEEEeeccChhhHHHHHHcCcccc
Q psy12793        300 RSDEENGRAY--YFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCRKLVV  350 (352)
Q Consensus       300 ~~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (352)
                      +..+..++.|  .|+++..|+.++..+.|+|++..   ..++..+...|++||
T Consensus       184 ~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev~se---Ve~i~~v~~~Gk~vI  233 (337)
T 4dey_A          184 ADISLAKRSVLNNPSKHAIIERSNTRSSLAEVQSE---IERIFELARTLQLVV  233 (337)
T ss_dssp             SCGGGC-------------------CCCHHHHHHH---HHHHHHHTTTCCEEE
T ss_pred             chhhhcchhhhhcccchhhhcccccccchHHHHhH---HHHHHHHHhCCCEEE
Confidence            4555555543  58899999999999999986533   334555666777775

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=99.91  E-value=1.1e-24  Score=210.87  Aligned_cols=147  Identities=18%  Similarity=0.317  Sum_probs=96.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCC---------ceEEEEcCCCC---ceeeecCChhHHHHhh
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN---------WWQARKDNVAG---SAGLIPSPELQEWRTA  133 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~---------WWqaR~~~~~g---~~GlIPS~~v~e~r~a  133 (352)
                      +||||+|||++..+       .+|+|++||||+|+++.+++         ||+|++++..+   ..|+||+++++++...
T Consensus         5 fyVRalfdy~~~~~-------~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~aeq~~~   77 (308)
T 3kfv_A            5 FYIRTHFELEPSPP-------SGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAEQLAS   77 (308)
T ss_dssp             EEEEECSCBCCCSS-------SBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHHHHHH
T ss_pred             EEEEEecCcCCCCc-------ccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHHHHHH
Confidence            59999999999754       37999999999999998776         99999976533   6899999999987755


Q ss_pred             hcccccc-----c---cccccccccccccc---cccccccccCC--ccccccccccceeeEeccCCCCcEEEEEcCCCCC
Q psy12793        134 CSTIDKT-----K---HEQVNCSIFGRKKK---LYKDKYLAKHN--AVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVG  200 (352)
Q Consensus       134 ~~~~~~~-----~---~~~~~~~~~~rkkk---~~k~~~~~k~~--~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~g  200 (352)
                      .+.....     .   .......++++|.+   .++........  ....+..+++||+|++++++..|||||+||   +
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~r~~f~~~~~~r~~~k~~~~~~~~d~~~~~~~~~~~~YE~V~~~~~~~~RPvVl~GP---~  154 (308)
T 3kfv_A           78 LEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDLSALTRQGRYPPYERVVLREASFKRPVVILGP---V  154 (308)
T ss_dssp             HHHHHCC-----------------------------------CCCHHHHHHHTCCSEEEEEEEECSSCCCEEEEST---T
T ss_pred             HHHhhhhcccccccccccccccchhhhccccccccccccccccccccccccCCCcCchheeccccCCCCeEEEeCc---c
Confidence            4321110     0   01111223332211   11111111111  111344689999999999999999999999   4


Q ss_pred             hhHHHHHHHhhCCCCccccccc
Q psy12793        201 RRHIKNTLINKFPDKYAYPVPQ  222 (352)
Q Consensus       201 k~tl~~~L~~~~p~~F~~~v~~  222 (352)
                      |++|+++|++++|++|+++++.
T Consensus       155 k~~l~~~L~~~~P~~F~~~v~~  176 (308)
T 3kfv_A          155 ADIAMQKLTAEMPDQFEIAETV  176 (308)
T ss_dssp             HHHHHHHHHHHCTTTEEECCCC
T ss_pred             HHHHHHHHHHhCcccccccccc
Confidence            9999999999999999998765

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=99.84  E-value=4.1e-21  Score=173.21  Aligned_cols=91  Identities=31%  Similarity=0.603  Sum_probs=84.5

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHH
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA  267 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~  267 (352)
                      .|||||+|||||||+||.++|++++|+.|.+++++                                             
T Consensus         1 ~RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~---------------------------------------------   35 (186)
T 1ex7_A            1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSS---------------------------------------------   35 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCE---------------------------------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEE---------------------------------------------
Confidence            38999999999999999999999999999999999                                             


Q ss_pred             HhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHHH
Q psy12793        268 CSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRHI  342 (352)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  342 (352)
                                                 |||+||++|.||.+|||||.++|+.++++++||||++...     +..+++.+
T Consensus        36 ---------------------------TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~~~v~~~   88 (186)
T 1ex7_A           36 ---------------------------TTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQV   88 (186)
T ss_dssp             ---------------------------ECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHH
T ss_pred             ---------------------------eccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeecceeeeh
Confidence                                       9999999999999999999999999999999999998754     34678899


Q ss_pred             HHcCcccc
Q psy12793        343 VSCRKLVV  350 (352)
Q Consensus       343 ~~~~~~~~  350 (352)
                      +..|+.||
T Consensus        89 l~~g~~vi   96 (186)
T 1ex7_A           89 SKSGKTCI   96 (186)
T ss_dssp             HHHTSEEE
T ss_pred             hhCCCEEE
Confidence            99998876

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=99.66  E-value=3.4e-16  Score=142.44  Aligned_cols=96  Identities=48%  Similarity=0.791  Sum_probs=85.7

Q ss_pred             ccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHH
Q psy12793        183 LPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  262 (352)
Q Consensus       183 ~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~  262 (352)
                      +|++.+++|||+|||||||+||.++|+..+|+.|.+++++                                        
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~----------------------------------------   53 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPY----------------------------------------   53 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE----------------------------------------
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecc----------------------------------------
Confidence            5677899999999999999999999999999888889999                                        


Q ss_pred             HHHHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----Chh
Q psy12793        263 EWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THP  337 (352)
Q Consensus       263 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  337 (352)
                                                      |||+||.+|.||.+|+|+|.++|..+++++.||||++...     ...
T Consensus        54 --------------------------------TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n~YGt~~~  101 (197)
T 3ney_A           54 --------------------------------TTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGNMFGTKFE  101 (197)
T ss_dssp             --------------------------------ECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHH
T ss_pred             --------------------------------cccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhceecccchh
Confidence                                            9999999999999999999999999999999999987543     235


Q ss_pred             hHHHHHHcCcccc
Q psy12793        338 SQRHIVSCRKLVV  350 (352)
Q Consensus       338 ~~~~~~~~~~~~~  350 (352)
                      .++.+++.|+.||
T Consensus       102 ~v~~~l~~G~~vi  114 (197)
T 3ney_A          102 TVHQIHKQNKIAI  114 (197)
T ss_dssp             HHHHHHHTTCEEE
T ss_pred             hHHHHHhcCCeEE
Confidence            6889999999875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=99.41  E-value=9e-13  Score=115.50  Aligned_cols=94  Identities=61%  Similarity=1.013  Sum_probs=77.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHH
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  264 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~  264 (352)
                      |+.+++++|+|||||||+|+.+.|....|..|...+++                                          
T Consensus         2 ~~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~------------------------------------------   39 (180)
T 1kgd_A            2 SHMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH------------------------------------------   39 (180)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE------------------------------------------
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec------------------------------------------
Confidence            35678999999999999999999999887657677777                                          


Q ss_pred             HHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhH
Q psy12793        265 RTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQ  339 (352)
Q Consensus       265 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  339 (352)
                                                    |||.|+.+|.+|.+|+|++.++|..+++++.|+||++...     ....+
T Consensus        40 ------------------------------ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~yg~~~~~i   89 (180)
T 1kgd_A           40 ------------------------------TTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETI   89 (180)
T ss_dssp             ------------------------------ECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHH
T ss_pred             ------------------------------cCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCccccccHHHH
Confidence                                          8999999999999999999999999999999999986433     23457


Q ss_pred             HHHHHcCcccc
Q psy12793        340 RHIVSCRKLVV  350 (352)
Q Consensus       340 ~~~~~~~~~~~  350 (352)
                      +.+++.++.||
T Consensus        90 ~~~l~~g~~vi  100 (180)
T 1kgd_A           90 RKIHEQGLIAI  100 (180)
T ss_dssp             HHHHHTTCEEE
T ss_pred             HHHHHCCCeEE
Confidence            78888888764

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.40  E-value=7.5e-13  Score=117.84  Aligned_cols=93  Identities=27%  Similarity=0.545  Sum_probs=79.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHH
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  265 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r  265 (352)
                      ..+++|+|+|||||||+|+.++|....+..|.+.+++                                           
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~-------------------------------------------   46 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISC-------------------------------------------   46 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEE-------------------------------------------
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeee-------------------------------------------
Confidence            3578999999999999999999999887657677777                                           


Q ss_pred             HHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHH
Q psy12793        266 TACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQR  340 (352)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  340 (352)
                                                   |||.+|.+|.+|.+|+|++.++|..++.++.|+|+++...     ....+.
T Consensus        47 -----------------------------ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   97 (204)
T 2qor_A           47 -----------------------------TTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGTLKSEYD   97 (204)
T ss_dssp             -----------------------------ECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHH
T ss_pred             -----------------------------cCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeecCCHHHHH
Confidence                                         9999999999999999999999999999999999886532     123567


Q ss_pred             HHHHcCcccc
Q psy12793        341 HIVSCRKLVV  350 (352)
Q Consensus       341 ~~~~~~~~~~  350 (352)
                      .+++.|+.||
T Consensus        98 ~~l~~g~~vi  107 (204)
T 2qor_A           98 LAVGEGKICL  107 (204)
T ss_dssp             HHHHTTCEEE
T ss_pred             HHHHcCCeEE
Confidence            7888888665

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=99.40  E-value=1.1e-12  Score=117.74  Aligned_cols=92  Identities=24%  Similarity=0.439  Sum_probs=81.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  266 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~  266 (352)
                      .+++|+|+|||||||+|+.+.|+...|..|.+.+++                                            
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~--------------------------------------------   42 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM--------------------------------------------   42 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE--------------------------------------------
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec--------------------------------------------
Confidence            578999999999999999999999887667778888                                            


Q ss_pred             HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793        267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH  341 (352)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  341 (352)
                                                  |||+++.+|.+|.+|+|++.++|..++.++.|+||++...     ....++.
T Consensus        43 ----------------------------~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~yg~~~~~i~~   94 (208)
T 3tau_A           43 ----------------------------TTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTPLEYVEE   94 (208)
T ss_dssp             ----------------------------ESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHH
T ss_pred             ----------------------------ccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccCCCcHHHHHH
Confidence                                        9999999999999999999999999999999999987543     2355788


Q ss_pred             HHHcCcccc
Q psy12793        342 IVSCRKLVV  350 (352)
Q Consensus       342 ~~~~~~~~~  350 (352)
                      +++.|+.||
T Consensus        95 ~l~~g~~vi  103 (208)
T 3tau_A           95 KLAAGVDIF  103 (208)
T ss_dssp             HHHTTCCEE
T ss_pred             HHHcCCeEE
Confidence            999998775

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.37  E-value=1.5e-12  Score=124.83  Aligned_cols=58  Identities=36%  Similarity=0.815  Sum_probs=50.5

Q ss_pred             eeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         64 LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        64 lqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      ...+++|+|||.+..++       +|+|++||+|.|+++.|++||.++.  .+++.|+||++|++..
T Consensus       133 ~~~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~~  190 (304)
T 2eyz_A          133 EAEYVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAED--SEGKRGMIPVPYVEKY  190 (304)
T ss_dssp             CCCEEEECSCCCCSCSS-------SCCCCTTCEEEEEECCSSSEEEEEC--TTSCEEEEESTTEEEC
T ss_pred             cceeEEEEeeecCCCCC-------cCcccCCCEEEEEEecCCCcEEEEe--CCCceeccchhccccc
Confidence            34678999999998765       6999999999999999999999983  4689999999999753

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.34  E-value=8e-13  Score=118.89  Aligned_cols=118  Identities=21%  Similarity=0.400  Sum_probs=84.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhhhccccccccccc
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQV  145 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a~~~~~~~~~~~~  145 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++......       .   
T Consensus        12 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~gWw~g~~---~g~~G~~P~~yv~~~~~~~-------~---   71 (193)
T 1ng2_A           12 QTYRAIADYEKTSGS-------EMALSTGDVVEVVEKSESGWWFCQM---KAKRGWIPASFLEPLDSPD-------E---   71 (193)
T ss_dssp             EEEECSSCBCCSSTT-------CCCBCTTCEEEEEECCTTSCCEEEE---CCCCCCCCGGGCCCSSCSS-------C---
T ss_pred             cEEEEcCCcCCCCCC-------cCCCCCCCEEEEEEecCCCeEEEEE---CCeeeEechheEEeecccc-------c---
Confidence            467999999998765       6999999999999999999999983   5789999999985310000       0   


Q ss_pred             cccccccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCcccccccc--
Q psy12793        146 NCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQF--  223 (352)
Q Consensus       146 ~~~~~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~--  223 (352)
                                          . .   .         ..+......                     +..+|.|.+...  
T Consensus        72 --------------------~-~---~---------~~p~~~~~~---------------------~~al~dy~a~~~~e   97 (193)
T 1ng2_A           72 --------------------T-E---D---------PEPNYAGEP---------------------YVAIKAYTAVEGDE   97 (193)
T ss_dssp             --------------------S-C---C---------CCCCTTCEE---------------------EEESSCBCCCSTTB
T ss_pred             --------------------c-c---h---------hhcccccee---------------------eeeccccCCCCCCc
Confidence                                0 0   0         001000010                     123566766544  


Q ss_pred             -ccccceeEEEeecCCcchhhhhccCCCCCccccCChh
Q psy12793        224 -ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPE  260 (352)
Q Consensus       224 -~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~  260 (352)
                       +|.+|++|.||.+.+.+||.++.   +|..|+||+--
T Consensus        98 Ls~~~Gd~i~vl~~~~~gWw~g~~---~g~~G~~P~~y  132 (193)
T 1ng2_A           98 VSLLEGEAVEVIHKLLDGWWVIRK---DDVTGYFPSMY  132 (193)
T ss_dssp             CCBCTTCEEEEEECCTTSEEEEEE---TTEEEEEEGGG
T ss_pred             ccccCCCEEEEEEecCCCeEEEEE---CCCEEEEehHH
Confidence             89999999999999999998875   56789999843

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=1.3e-12  Score=100.59  Aligned_cols=61  Identities=23%  Similarity=0.490  Sum_probs=54.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEee-ccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIIS-KDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~-~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||++..++.+||.+.+|+|++||+|+|+. ..+++||+++.   +++.|+||++|++.
T Consensus         8 ~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~---~g~~G~fP~~yv~~   69 (75)
T 2ege_A            8 KIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGEL---GGHRGLVPAHLLDH   69 (75)
T ss_dssp             EEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEES---SSCEEEEETTTEEE
T ss_pred             cEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEE---CCcEEEEChHHeEE
Confidence            468999999999988899988999999999999997 57889999984   68999999999864

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.31  E-value=1.3e-12  Score=97.66  Aligned_cols=54  Identities=22%  Similarity=0.589  Sum_probs=47.1

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+||+|||.+..++.      +|+|++||+|.|+++.|++||.++.  .+|+.|+||++|++
T Consensus         5 ~~rAlydy~~~~~~e------~Ls~~~Gd~i~v~~~~~~~Ww~g~~--~~G~~G~fP~nyVe   58 (60)
T 2lx7_A            5 RCRTLYPFSGERHGQ------GLRFAAGELITLLQVPDGGWWEGEK--EDGLRGWFPASYVQ   58 (60)
T ss_dssp             EEEESCCCCSCCCSS------CCCCCTTCEEEBSCCCTTSCEEEEC--TTSCEEEECGGGEE
T ss_pred             EEEECcccCCCCCCC------CccCCCCCEEEEeEecCCCeEEEEe--CCCCEEEEcHHHEE
Confidence            579999999987541      4999999999999999999999983  46899999999985

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.29  E-value=1.6e-12  Score=126.42  Aligned_cols=145  Identities=12%  Similarity=0.200  Sum_probs=87.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhhhccccccccccc
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQV  145 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a~~~~~~~~~~~~  145 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+++.+++||.++.   +|+.|+||++|++......   .   . ..
T Consensus       175 ~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~~~~~~---~---~-~~  237 (341)
T 2dyb_A          175 PRAEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGTV---RGATGIFPLSFVKILKDFP---E---E-DD  237 (341)
T ss_dssp             CEEEESSCBCCSSSS-------BCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGGGEEEEECCC---C---T-TC
T ss_pred             cEEEEEEeeCCCCCC-------cCCccCCCEEEEEEecCCCEEEEEE---CCcEEEechHHeEEcCCCC---c---c-cc
Confidence            468999999998765       6999999999999999999999984   5899999999986421110   0   0 00


Q ss_pred             cccccccccccccccccccCCccccccccccceeeEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCcccccccc--
Q psy12793        146 NCSIFGRKKKLYKDKYLAKHNAVFDQLDLVTYEEVVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQF--  223 (352)
Q Consensus       146 ~~~~~~rkkk~~k~~~~~k~~~~~~~~~i~sYEeV~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~--  223 (352)
                      ....        ...+.....            .+      ..+-..+..+.+++.. . ..+....+..|.   .++  
T Consensus       238 ~~~~--------~~~~~~~~~------------~~------~~~~~~~~~~~~~~~~-~-~a~yd~~~~~~~---~~e~e  286 (341)
T 2dyb_A          238 PTNW--------LRCYYYEDT------------IS------TIKDIAVEEDLSSTPL-L-KDLLELTRREFQ---REDIA  286 (341)
T ss_dssp             CCEE--------EEEEEECSS------------CE------EEEEEEECSCTTCCCC-H-HHHHHHHHHHHT---CSCEE
T ss_pred             cccc--------ccccccCCC------------Cc------cccccccccccCCCcc-h-hhhhhhhhhhcC---CCccc
Confidence            0000        000000000            00      0000011111111111 1 112221111111   222  


Q ss_pred             -cc--ccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        224 -IT--VCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       224 -~~--~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                       .|  ..|++|.|+.+.|.+||.++..|..|..||||+
T Consensus       287 L~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~  324 (341)
T 2dyb_A          287 LNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPW  324 (341)
T ss_dssp             EEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSS
T ss_pred             ccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecc
Confidence             34  699999999999999999999999999999998

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.27  E-value=3.5e-12  Score=98.31  Aligned_cols=61  Identities=26%  Similarity=0.472  Sum_probs=55.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCC-CceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-NWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~-~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++.+||.+.+|+|++||+|.|+.+.++ +||.++.   +++.|+||++|++.
T Consensus         8 ~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~---~g~~G~~P~~yv~~   69 (76)
T 2csi_A            8 RRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGEL---NGQKGLVPSNFLEE   69 (76)
T ss_dssp             EEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEE---TTEEEEEEGGGCCB
T ss_pred             cEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEE---CCcEEEEehHHEEE
Confidence            4689999999999999999999999999999999998775 7999985   58999999999864

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.25  E-value=3.4e-12  Score=122.23  Aligned_cols=54  Identities=31%  Similarity=0.741  Sum_probs=48.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+++.|++||+++.  .+++.|+||++|++
T Consensus       148 ~~~~al~dy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~  201 (308)
T 3qwy_A          148 EVVVGTFKFTGERET-------DLPFEQGERLEILSKTNQDWWEARN--ALGTTGLVPANYVQ  201 (308)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEC--TTSCEEEEEGGGEE
T ss_pred             eeEEEeceEcCCCCC-------cCcCCCCCEEEEEEcCCCCeEEEEe--CCCCeeEecccccc
Confidence            478999999998765       6999999999999999999999994  36789999999997

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.25  E-value=5.7e-12  Score=95.41  Aligned_cols=55  Identities=24%  Similarity=0.506  Sum_probs=48.4

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||+|.|+++.|++||.++.. .+++.|+||++|+++
T Consensus         8 ~~~Alydy~a~~~~-------ELs~~~Gd~i~v~~~~~~gWw~g~~~-~~g~~G~~P~nyVe~   62 (65)
T 2lj0_A            8 SYQALYSYIPQNDD-------ELELRDGDIVDVMEKCDDGWFVGTSR-RTKQFGTFPGNYVKP   62 (65)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEEET-TTCCEEEEETTSEEE
T ss_pred             EEEEceeECCCCcC-------CcCCCCCCEEEEeEeCCCCEEEEEEC-CCCCEEEEehhHeEE
Confidence            46999999998865       69999999999999999999999853 368999999999864

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.89  E-value=6.6e-13  Score=127.17  Aligned_cols=57  Identities=33%  Similarity=0.768  Sum_probs=49.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  131 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r  131 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+++.|++||.++.  .+++.|+||++|++...
T Consensus       126 ~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~~~~--~~g~~G~~P~~yv~~~~  182 (303)
T 2lqn_A          126 EYVRTLYDFPGNDAE-------DLPFKKGEILVIIEKPEEQWWSARN--KDGRVGMIPVPYVEKLV  182 (303)
Confidence            568999999998765       6999999999999999999999984  36889999999998644

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.23  E-value=8.2e-13  Score=119.41  Aligned_cols=53  Identities=30%  Similarity=0.725  Sum_probs=41.8

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      -++|+|||.+..++       +|+|++||+|.|+... +++||.++.   +++.|+||++|++.
T Consensus         2 ~~~al~~~~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~~~~---~g~~G~~P~~yv~~   55 (217)
T 1gri_A            2 EAIAKYDFKATADD-------ELSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPKNYIEM   55 (217)
T ss_dssp             EEEECSCBCCCSSS-------CCCBCTTCEEEC------CCEEEEES---SSCEEEEEGGGEEC
T ss_pred             EEEEeeccCCcCCC-------cCCCCCCCEEEEEeccCCCCeEeecc---CCccceECCccccc
Confidence            46899999998765       6999999999999987 678999983   68999999999863

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.21  E-value=1.1e-11  Score=93.04  Aligned_cols=55  Identities=38%  Similarity=0.853  Sum_probs=48.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+++.+++||.++.  .+++.|+||++|++.
T Consensus         4 ~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~   58 (65)
T 1b07_A            4 EYVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAED--SEGKRGMIPVPYVEK   58 (65)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEEC--TTSCEEEEEGGGEEE
T ss_pred             eEEEECCcCCCCCCC-------ccCCcCCCEEEEEEecCCCeEEEEE--CCCCEEEEChHHEee
Confidence            368999999998765       6999999999999999999999984  358999999999853

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.19  E-value=1.5e-11  Score=94.66  Aligned_cols=57  Identities=18%  Similarity=0.500  Sum_probs=49.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+++.+++||.++..+..++.|+||++|++.
T Consensus        11 ~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~~yv~~   67 (76)
T 2ed1_A           11 RRVKTIYDCQADNDD-------ELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHI   67 (76)
T ss_dssp             EEEEESSCCCCSSSS-------BCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEGGGEEE
T ss_pred             eEEEECccCCCCCcC-------CcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEehHHeEE
Confidence            478999999998765       699999999999999999999999754457999999999864

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.19  E-value=1.6e-11  Score=89.17  Aligned_cols=54  Identities=39%  Similarity=0.885  Sum_probs=47.5

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|+|||.+..++       +|+|++||++.|++..+++||.++.  .+++.|+||++|++.
T Consensus         3 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~   56 (57)
T 1cka_A            3 YVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAED--SEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEEC--TTSCEEEEEGGGEEC
T ss_pred             EEEECCcCCCCCCC-------CCCCCCCCEEEEEEecCCCcEEEEe--CCCCEEEEeHHHEEE
Confidence            57899999998765       6999999999999999999999984  358999999999853

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.17  E-value=2.3e-11  Score=92.29  Aligned_cols=55  Identities=22%  Similarity=0.610  Sum_probs=47.5

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +.+++|+|||.+..++       +|+|++||+|.|++++ ++||.++..  +++.|+||++|++.
T Consensus         4 ~~~~~Alydy~a~~~~-------ELsf~~Gd~i~vl~~~-~~Ww~~~~~--~g~~G~~Psnyv~~   58 (67)
T 2b86_A            4 EVIVIAKWDYTAQQDQ-------ELDIKKNERLWLLDDS-KTWWRVRNA--ANRTGYVPSNYVER   58 (67)
T ss_dssp             CEEEEESSCBCCSSTT-------SCCBCTTCEEEEEECS-SSSCEEECT--TSCEEECCCCSEEE
T ss_pred             CeEEEEeeeECCCCCC-------ccccCCCCEEEEEecC-CCeEEEEeC--CCCEEEeChHHEeE
Confidence            3578999999998765       6999999999999984 699999843  68999999999864

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=99.17  E-value=6.3e-11  Score=105.67  Aligned_cols=91  Identities=27%  Similarity=0.573  Sum_probs=76.2

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  266 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~  266 (352)
                      .+++++|+|||||||+|+.+.|....|..|++.+.+                                            
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~--------------------------------------------   38 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSH--------------------------------------------   38 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCE--------------------------------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeee--------------------------------------------
Confidence            467899999999999999999999888788888888                                            


Q ss_pred             HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793        267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH  341 (352)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  341 (352)
                                                  |||.|+.++.+|.+|+|++.++|...+.++.|+||+....     +...++.
T Consensus        39 ----------------------------ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g~~~~~i~~   90 (198)
T 1lvg_A           39 ----------------------------TTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKEAVRA   90 (198)
T ss_dssp             ----------------------------ECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHHHHHH
T ss_pred             ----------------------------eccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCCCCHHHHHH
Confidence                                        8999999999999999999999999999999999876432     2345666


Q ss_pred             HHHcCccc
Q psy12793        342 IVSCRKLV  349 (352)
Q Consensus       342 ~~~~~~~~  349 (352)
                      ++..++.+
T Consensus        91 ~~~~~~~~   98 (198)
T 1lvg_A           91 VQAMNRIC   98 (198)
T ss_dssp             HHHTTCEE
T ss_pred             HHHcCCcE
Confidence            67666544

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.16  E-value=3.1e-11  Score=87.94  Aligned_cols=54  Identities=28%  Similarity=0.617  Sum_probs=47.2

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .++|+|||.+..++       +|+|++||+|.|+...+++||.++.. .+++.|+||++|++
T Consensus         2 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~yv~   55 (58)
T 1jo8_A            2 WATAEYDYDAAEDN-------ELTFVENDKIINIEFVDDDWWLGELE-KDGSKGLFPSNYVS   55 (58)
T ss_dssp             CEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEET-TTCCEEEEEGGGEE
T ss_pred             EEEECceECCCCCC-------CcccCCCCEEEEEEecCCCcEEEEEC-CCCCEEEechHHeE
Confidence            36899999998765       69999999999999999999999863 35899999999985

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.14  E-value=3.6e-11  Score=90.48  Aligned_cols=55  Identities=22%  Similarity=0.439  Sum_probs=48.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCC---ceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAG---SAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g---~~GlIPS~~v~  128 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+++.+++||.++..+ .+   +.|+||++|++
T Consensus         8 ~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~~-~g~~~~~G~fP~~yv~   65 (68)
T 1tg0_A            8 FKVVAQFPYKSDYED-------DLNFEKDQEIIVTSVEDAEWYFGEYQD-SNGDVIEGIFPKSFVA   65 (68)
T ss_dssp             EEEEESSCBCCSCTT-------BCCBCTTCEEEEEEECSSSEEEEEEEC-TTSCEEEEEEEGGGEE
T ss_pred             EEEEECeeECcCCcC-------CCCCCCCCEEEEEEecCCCeEEEEECC-CCCCCEEEEEchHHEE
Confidence            468999999998765       699999999999999999999999743 34   89999999985

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.13  E-value=4.3e-11  Score=90.63  Aligned_cols=55  Identities=29%  Similarity=0.652  Sum_probs=48.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEee-ccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIIS-KDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~-~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+. ..+++||.++.  .+++.|+||++|+++
T Consensus        12 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~   67 (71)
T 1csk_A           12 TECIAKYNFHGTAEQ-------DLPFCKGDVLTIVAVTKDPNWYKAKN--KVGREGIIPANYVQK   67 (71)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECSSTTEEEEEC--TTSCEEEEETTSEEC
T ss_pred             CEEEEceeECcCCCC-------cCCCCCCCEEEEeECCCCCCCEEEEe--CCCCEEEEehHHeEE
Confidence            458999999998765       69999999999999 78899999983  368999999999875

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.13  E-value=3.5e-11  Score=87.68  Aligned_cols=53  Identities=38%  Similarity=0.773  Sum_probs=47.3

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|+++
T Consensus         5 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            5 VFRALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWWKGTS---KGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEECccCCCCCCC-------CccCCCCCEEEEEEeCCCCEEEEEE---CCCEEEEehHHEEe
Confidence            68999999998764       6999999999999999999999985   68899999999864

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.13  E-value=4.3e-11  Score=87.09  Aligned_cols=53  Identities=23%  Similarity=0.747  Sum_probs=47.3

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|+|||.+..++       +|+|++||++.|++..+++||.++.   +++.|+||++|++.
T Consensus         3 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   55 (58)
T 1uti_A            3 WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGRL---HNKLGLFPANYVAP   55 (58)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEECccCCCCCcC-------CCCCCCCCEEEEEEECCCCEEEEEE---CCeEEEeeHHHeEE
Confidence            67999999998764       6999999999999999999999985   58999999999853

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.13  E-value=4.2e-11  Score=87.83  Aligned_cols=53  Identities=32%  Similarity=0.712  Sum_probs=47.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      ..++|+|||.+..++       +|+|++||++.|+.+.+++||.++.   +++.|+||++|++
T Consensus         6 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   58 (60)
T 2xmf_A            6 PQCKALYAYDAQDTD-------ELSFNANDIIDIIKEDPSGWWTGRL---RGKQGLFPNNYVT   58 (60)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEEE---TTEEEEEEGGGEE
T ss_pred             cEEEECccCCcCCcC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCEEEEEcHHHEE
Confidence            468999999998764       6999999999999999999999995   5889999999975

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.13  E-value=1.8e-11  Score=101.48  Aligned_cols=58  Identities=17%  Similarity=0.401  Sum_probs=49.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      ++++|+|||.+..++       +|+|++||+|.|+++.+++||+++..+..++.|+||++|++..
T Consensus         6 ~~~~Alydy~a~~~~-------ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPsnYV~~~   63 (108)
T 2rqv_A            6 LYAIVLYDFKAEKAD-------ELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSII   63 (108)
T ss_dssp             CCEEESSCCCCCSSS-------BCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEESTTCBCC
T ss_pred             eEEEECCCcCCCCCC-------cCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeecceEEEe
Confidence            578999999998765       6999999999999999999999986444466699999999753

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.13  E-value=4.3e-11  Score=89.80  Aligned_cols=54  Identities=30%  Similarity=0.642  Sum_probs=48.0

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||+|.|+.+.+++||.++..  +++.|+||++|++.
T Consensus         4 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~yv~~   57 (67)
T 1gl5_A            4 IVVAMYDFQATEAH-------DLRLERGQEYIILEKNDLHWWRARDK--YGSEGYIPSNYVTG   57 (67)
T ss_dssp             CEEECSCBCCSSSS-------BCCBCTTCEEEEEECSSSSEEEEECS--SSCEEEEETTSEES
T ss_pred             EEEECccCCCCCCC-------eecCCcCCEEEEEEccCCCcEEEEEC--CCCEEEEEhHhEEE
Confidence            57899999998765       69999999999999999999999843  58899999999875

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.12  E-value=5e-11  Score=89.82  Aligned_cols=55  Identities=24%  Similarity=0.637  Sum_probs=48.5

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc---CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD---DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~---D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++++|+|||.+..++       +|+|++||+|.|+...   +++||.++.   +++.|+||++|++.
T Consensus         3 ~~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   60 (69)
T 1wyx_A            3 NVLAKALYDNVAESPD-------ELSFRKGDIMTVLEQDTQGLDGWWLCSL---HGRQGIVPGNRLKI   60 (69)
T ss_dssp             EEEEEESSCBCCSSTT-------BCCBCTTCEEEEEETTGGGCTTEEEEEE---TTEEEEEEGGGEEE
T ss_pred             CEEEEECccCCcCCCC-------ccCCcCCCEEEEeECCCCCCCCcEEEEE---CCcEEEechhhEEE
Confidence            4678999999998765       6999999999999987   789999984   58899999999864

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.12  E-value=4.8e-11  Score=89.00  Aligned_cols=56  Identities=27%  Similarity=0.391  Sum_probs=48.0

Q ss_pred             eeeeeccccCC-CCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNP-LDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp-~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+ ..++       +|+|++||+|.|+...+++||.++.. .+++.|+||++|++.
T Consensus         6 ~~~~alydy~~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv~~   62 (65)
T 2j05_A            6 RRVRAILPYTKVPDTD-------EISFLKGDMFIVHNELEDGWMWVTNL-RTDEQGLIVEDLVEE   62 (65)
T ss_dssp             CEEEESSCBCCCTTSS-------BCCBCTTCEEEEEEECTTSEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             cEEEEccccCCCCCCC-------cCcCCCCCEEEEeEecCCCEEEEEEC-CCCCEEEEEhHHeEE
Confidence            45899999999 6654       79999999999999989999999853 368999999999863

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.12  E-value=4.2e-11  Score=87.28  Aligned_cols=52  Identities=23%  Similarity=0.645  Sum_probs=46.9

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      +++|+|||.+..++       +|+|++||++.|+++.+++||.++.   +++.|+||++|++
T Consensus         4 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   55 (58)
T 1zx6_A            4 YVEALYQFDPQQDG-------DLGLKPGDKVQLLEKLSPEWYKGSC---NGRTGIFPANYVK   55 (58)
T ss_dssp             EEEECSCBCCCSTT-------BCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEEECceECCCCCC-------CccCCCCCEEEEEEecCCCEEEEEE---CCcEEEeeHHHEE
Confidence            67899999998765       6999999999999998999999995   6899999999985

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.12  E-value=4e-11  Score=87.65  Aligned_cols=53  Identities=28%  Similarity=0.759  Sum_probs=47.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++
T Consensus         5 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   57 (59)
T 2g6f_X            5 SVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGTH---NGRTGWFPSNYVR   57 (59)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEEE---TTEEEEEEGGGEE
T ss_pred             cEEEECceeCCCCcC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCcEEEEeHHHEE
Confidence            368999999998754       6999999999999999999999985   6789999999975

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.12  E-value=4.1e-11  Score=87.88  Aligned_cols=54  Identities=19%  Similarity=0.653  Sum_probs=47.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||++.|++. +++||.++..  +++.|+||++|++.
T Consensus         2 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~~~~~--~g~~G~~P~~yv~~   55 (60)
T 1i07_A            2 KYAKSKYDFVARNSS-------ELSVMKDDVLEILDD-RRQWWKVRNA--SGDSGFVPNNILDI   55 (60)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEECGG-GCCEEEEECT--TSCEEEEEGGGEEE
T ss_pred             eEEEECccCCCCCCC-------cccCCCCCEEEEEEc-CCCeEEEEEC--CCCEEEEEHHHeEE
Confidence            368999999998765       699999999999999 8899999843  58999999999864

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.12  E-value=4.3e-11  Score=87.91  Aligned_cols=53  Identities=26%  Similarity=0.631  Sum_probs=47.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++
T Consensus         7 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   59 (60)
T 2gnc_A            7 EFAIAKFDYVGRSAR-------ELSFKKGASLLLYHRASEDWWEGRH---NGIDGLVPHQYIV   59 (60)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEEETTEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEEEECCCCCcCCcC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCeEEEEeHhhEE
Confidence            578999999998765       6999999999999998889999995   5899999999974

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.11  E-value=2.5e-10  Score=104.44  Aligned_cols=93  Identities=23%  Similarity=0.416  Sum_probs=77.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCC-CccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHH
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPD-KYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  264 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~-~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~  264 (352)
                      ..+.+++|+|||||||+||.+.|....|. .+...+..                                          
T Consensus        14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~------------------------------------------   51 (219)
T 1s96_A           14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSH------------------------------------------   51 (219)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCE------------------------------------------
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEe------------------------------------------
Confidence            35789999999999999999999998763 45556666                                          


Q ss_pred             HHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhH
Q psy12793        265 RTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQ  339 (352)
Q Consensus       265 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  339 (352)
                                                    |+|++|..|.+|.+|+|++.++|..++.++.|+||.+...     ....+
T Consensus        52 ------------------------------ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg~~~~~v  101 (219)
T 1s96_A           52 ------------------------------TTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAI  101 (219)
T ss_dssp             ------------------------------ECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHH
T ss_pred             ------------------------------cCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCCCCHHHH
Confidence                                          8999999999999999999999999999999999887543     13457


Q ss_pred             HHHHHcCcccc
Q psy12793        340 RHIVSCRKLVV  350 (352)
Q Consensus       340 ~~~~~~~~~~~  350 (352)
                      +.+++.|+++|
T Consensus       102 ~~~l~~G~ill  112 (219)
T 1s96_A          102 EQVLATGVDVF  112 (219)
T ss_dssp             HHHHTTTCEEE
T ss_pred             HHHHhcCCeEE
Confidence            77888877664

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.11  E-value=5.7e-11  Score=86.33  Aligned_cols=53  Identities=28%  Similarity=0.818  Sum_probs=47.3

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|+|||.+..++       +|+|++||++.|+...+++||.++.   +++.|+||++|++.
T Consensus         4 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   56 (58)
T 2vwf_A            4 YVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGAC---HGQTGMFPRNYVTA   56 (58)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEECceECCCCcC-------CcCCCCCCEEEEEEcCCCCEEEEEE---CCcEEEEchHHeEE
Confidence            67999999998765       6999999999999998999999995   68999999999853

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.11  E-value=6.9e-11  Score=87.23  Aligned_cols=54  Identities=28%  Similarity=0.607  Sum_probs=47.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++..+++||.++.   +++.|+||++|++.
T Consensus         6 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   59 (62)
T 1k4u_S            6 SQVEALFSYEATQPE-------DLEFQEGDIILVLSKVNEEWLEGES---KGKVGIFPKVFVED   59 (62)
T ss_dssp             EEEECCSCBCCCSSS-------BCCBCSSCEEEEEEESSSSCEEEEC---SSCEEEECGGGCCC
T ss_pred             eEEEECCCCCcCCCC-------CccCCCCCEEEEEEeCCCCEEEEEE---CCcEEEEeHHHEEE
Confidence            468999999998765       6999999999999998999999983   58999999999853

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.11  E-value=6.5e-11  Score=88.93  Aligned_cols=53  Identities=25%  Similarity=0.535  Sum_probs=47.2

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|+|||.+..++       +|+|++||+|.|++..+++||.++.   +++.|+||++|++.
T Consensus         3 ~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~fP~~yv~~   55 (65)
T 2nwm_A            3 AARLKFDFQAQSPK-------ELTLQKGDIVYIHKEVDKNWLEGEH---HGRLGIFPANYVEV   55 (65)
T ss_dssp             EEEECSCBCCCSTT-------BCCBCTTCEEEEEECCTTTCEEEEE---TTEEEEECGGGEEE
T ss_pred             EEEEeeeECCCCcC-------ccCCcCCCEEEEEEecCCCEEEEEE---CCcEEEEehhhEEE
Confidence            57899999998765       6999999999999999999999984   58999999999864

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.11  E-value=5.9e-11  Score=86.23  Aligned_cols=53  Identities=38%  Similarity=0.842  Sum_probs=47.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+++|+|||.+..++       +|+|++||++.|+...+++||.++.   +++.|+||++|++
T Consensus         3 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   55 (58)
T 1sem_A            3 KFVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQL---NNRRGIFPSNYVC   55 (58)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             eEEEECcCCCCCCCC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCcEEEechHHeE
Confidence            367999999998764       6999999999999999999999996   5899999999985

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.11  E-value=5.6e-11  Score=87.30  Aligned_cols=53  Identities=19%  Similarity=0.508  Sum_probs=47.4

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      ..++|+|||.+..++       +|+|++||++.|++..+++||.++.   +++.|+||++|++
T Consensus         5 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv~   57 (60)
T 1w70_A            5 MRAEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGTV---RGATGIFPLSFVK   57 (60)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             cEEEECccCCcCCCC-------CccCCCCCEEEEEEeCCCCeEEEEE---CCCEEEechHHEE
Confidence            468999999998765       6999999999999999999999984   5899999999985

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.11  E-value=5.6e-11  Score=87.73  Aligned_cols=55  Identities=24%  Similarity=0.461  Sum_probs=48.0

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|+|||.+..++       +|+|++||+|.|+...+++||.++.. .+++.|+||++|+++
T Consensus         5 ~~~al~~y~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~~-~~g~~G~fP~~yv~~   59 (62)
T 2fpe_A            5 THRAIFRFVPRHED-------ELELEVDDPLLVELQAEDYWYEAYNM-RTGARGVFPAYYAIE   59 (62)
T ss_dssp             CEEECSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             EEEECccCCccCcC-------cCcCCCCCEEEEEEecCCCEEEEEEC-CCCCEEEechHHEEE
Confidence            57899999998765       69999999999999999999999853 368999999999864

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.11  E-value=5.3e-11  Score=89.53  Aligned_cols=53  Identities=28%  Similarity=0.675  Sum_probs=47.4

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||+|.|+++.+++||.++.   +++.|+||++|++.
T Consensus         3 ~~~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv~~   55 (65)
T 2fei_A            3 QCKVLFEYIPQNED-------ELELKVGDIIDINEEVEEGWWSGTL---NNKLGLFPSNFVKE   55 (65)
T ss_dssp             EEECSSCCCCCSTT-------BCCCCTTCEEECCCCSSSSEEEEES---SSCEEEEETTTSCB
T ss_pred             EEEECccCCcCCcC-------ccCCCCCCEEEEEEecCCCEEEEEE---CCcEEEecHHHEEE
Confidence            57899999998765       6999999999999999999999983   68999999999864

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.11  E-value=6e-11  Score=87.96  Aligned_cols=54  Identities=30%  Similarity=0.796  Sum_probs=48.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++.
T Consensus         7 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   60 (64)
T 2ak5_A            7 LVVRAKFNFQQTNED-------ELSFSKGDVIHVTRVEEGGWWEGTH---NGRTGWFPSNYVRE   60 (64)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEEEccccCCcCcC-------cccCCCCCEEEEeEecCCCEEEEEE---CCCEEEEehHHeEE
Confidence            578999999998754       6999999999999999999999985   58899999999864

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.10  E-value=6.3e-11  Score=89.93  Aligned_cols=56  Identities=29%  Similarity=0.713  Sum_probs=48.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+++.+++||.++.. .+++.|+||++|+++
T Consensus        16 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~yv~~   71 (73)
T 3h0h_A           16 TLFVALYDYEAITED-------DLSFHKGEKFQILNSSEGDWWEARSL-TTGETGYIPSNYVAP   71 (73)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCC-------cceEeCCCEEEEEEecCCCeEEEEEC-CCCCEEEEEHHHeEE
Confidence            467899999998765       69999999999999999999999964 267899999999864

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.10  E-value=7.1e-11  Score=85.81  Aligned_cols=52  Identities=29%  Similarity=0.682  Sum_probs=47.0

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .++|+|||.+..++       +|+|++||++.|+.+.+++||.++.   +++.|+||++|++
T Consensus         5 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv~   56 (58)
T 2drm_A            5 QVKALYDYDAQTGD-------ELTFKEGDTIIVHQKDPAGWWEGEL---NGKRGWVPANYVQ   56 (58)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEEECccCCCCCcC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCcEEEEeHHHEE
Confidence            58999999998765       6999999999999999999999985   5899999999975

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.10  E-value=6e-11  Score=86.43  Aligned_cols=53  Identities=30%  Similarity=0.709  Sum_probs=47.1

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||++.|+...+++||.++.   +++.|+||++|++.
T Consensus         3 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   55 (58)
T 2bz8_A            3 EAIVEFDYQAQHDD-------ELTISVGEIITNIRKEDGGWWEGQI---NGRRGLFPDNFVRE   55 (58)
T ss_dssp             CEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTTEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEECcccCCCCcC-------EeeECCCCEEEEEEeCCCCEEEEEE---CCeEEEEehHHeEE
Confidence            47899999998765       6999999999999999999999985   58999999999864

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.10  E-value=7.1e-11  Score=88.94  Aligned_cols=54  Identities=24%  Similarity=0.466  Sum_probs=47.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   61 (68)
T 2dmo_A            8 EAHRVLFGFVPETKE-------ELQVMPGNIVFVLKKGNDNWATVMF---NGQKGLVPCNYLEP   61 (68)
T ss_dssp             EEEEECSSCCCCSSS-------SCCCCTTCEEEECEECSSSCEEEEE---TTEEEEECSTTEEE
T ss_pred             CEEEECcCCCcCCcC-------CCCCCCCCEEEEEEeCCCCEEEEEe---CCCEEEeehHHeEE
Confidence            468999999998765       6999999999999999999999974   58999999999864

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.10  E-value=6.4e-11  Score=89.75  Aligned_cols=54  Identities=22%  Similarity=0.586  Sum_probs=48.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++..+++||.++.   +++.|+||++|++.
T Consensus         4 ~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   57 (68)
T 2ew3_A            4 PCCRGLYDFEPENQG-------ELGFKEGDIITLTNQIDENWYEGMI---HGESGFFPINYVEV   57 (68)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEEESSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             CEEEEeeeECCCCCC-------ccCCCCCCEEEEEEecCCCEEEEEE---CCcEEEeeHHHEEE
Confidence            468999999998765       6999999999999999999999985   58999999999865

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.10  E-value=7e-11  Score=90.58  Aligned_cols=57  Identities=32%  Similarity=0.679  Sum_probs=48.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCce------eeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA------GLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~------GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++..+++||.++.....++.      |+||++|++.
T Consensus         8 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~   70 (77)
T 2d8j_A            8 QYFVALFDYQARTAE-------DLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAE   70 (77)
T ss_dssp             EEEEESSCBCCSSSS-------BCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETTTEEE
T ss_pred             CEEEEccCCCCCCCC-------ccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHHHeeE
Confidence            478999999998765       69999999999999999999999975322666      9999999864

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.09  E-value=4.7e-11  Score=96.18  Aligned_cols=61  Identities=23%  Similarity=0.439  Sum_probs=50.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEe-eccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQII-SKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl-~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||++.. +..++.+.+|+|++||+|.|+ ...+++||+++..  +++.|+||++|++.
T Consensus        18 ~~~~Alydy~~~~-~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~--~g~~G~~Psnyv~~   79 (96)
T 1wie_A           18 HLCVARYSYNPFD-GPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL--DGQRGLVPSNFVDF   79 (96)
T ss_dssp             EEEEESSCCCGGG-SSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEET--TCCBCBCCTTSEEC
T ss_pred             cEEEECCccCCCc-ccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEEC--CCCEEEEchHHEEE
Confidence            5789999999976 333444568999999999999 7788999999953  58899999999975

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.09  E-value=7.2e-11  Score=89.29  Aligned_cols=55  Identities=22%  Similarity=0.696  Sum_probs=47.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeec--cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK--DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~--~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+  .+++||.++.  .+++.|+||++|++.
T Consensus         7 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~   63 (71)
T 1u5s_A            7 HVVQTLYPFSSVTEE-------ELNFEKGETMEVIEKPENDPEWWKCKN--ARGQVGLVPKNYVVV   63 (71)
T ss_dssp             SEEEESSCCCCCSSS-------BCCCCSSCCEEEEECCCTTTCEEEEEE--TTTEEEEEETTSEEE
T ss_pred             EEEEEcccCCCCCCC-------cccCCCCCEEEEEECCCCCCCCEEEEe--CCCCEEEEeHHHEEE
Confidence            368999999998765       699999999999998  6889999984  358999999999864

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.09  E-value=6.9e-11  Score=88.77  Aligned_cols=54  Identities=24%  Similarity=0.535  Sum_probs=47.2

Q ss_pred             eeeeeccccCCC--CCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPL--DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~--~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+.  .++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus         2 ~~~~al~dy~~~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~fP~~yv~~   57 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKT-------ALALEVGDIVKVTRMNINGQWEGEV---NGRKGLFPFTHVKI   57 (67)
T ss_dssp             EEEEECSCBCSEEECTT-------BCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             cEEEEeeeECCCCCCCC-------ccccCCCCEEEEEEecCCCeEEEEe---CCcEEEEehHHeEE
Confidence            468999999987  543       6999999999999999999999974   58999999999864

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.09  E-value=1.1e-10  Score=88.88  Aligned_cols=54  Identities=35%  Similarity=0.753  Sum_probs=47.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeec---cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK---DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~---~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+   .+++||.++.   +++.|+||++|++.
T Consensus         9 ~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   65 (73)
T 2dl7_A            9 CFVKALYDYEGQTDD-------ELSFPEGAIIRILNKENQDDDGFWEGEF---NGRIGVFPSVLVEE   65 (73)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCCSSSSSCEEEEE---TTEEEEECSSSEEE
T ss_pred             EEEEECccCCcCCCC-------cCCCCCCCEEEEEECCCCCCCCcEEEEE---CCCEEEEChHHEEE
Confidence            578999999998765       699999999999998   4789999984   58999999999864

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.09  E-value=7.2e-11  Score=88.79  Aligned_cols=56  Identities=18%  Similarity=0.424  Sum_probs=47.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++     ..+|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus         7 ~~~~alydy~~~~~~-----~~eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv~~   62 (67)
T 2eyx_A            7 IYARVIQKRVPNAYD-----KTALALEVGELVKVTKINVSGQWEGEC---NGKRGHFPFTHVRL   62 (67)
T ss_dssp             CBEEECCCBCCCTTC-----SSBCCBCSSEEEEEEEECTTSEEEEEE---TTEEEEEEGGGBCC
T ss_pred             EEEEEeEEECCCCCC-----CCccccCCCCEEEEEEecCCCEEEEEE---CCCEEEEehHhEEE
Confidence            468999999997321     137999999999999999999999974   58999999999864

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.09  E-value=5.5e-11  Score=89.45  Aligned_cols=56  Identities=25%  Similarity=0.566  Sum_probs=48.8

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  131 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r  131 (352)
                      .++|+|||.+..++       +|+|++||+|.|+++.+++||.++.  .+++.|+||++|+++..
T Consensus         8 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            8 TVVALYDYTANRSD-------ELTIHRGDIIRVFFKDNEDWWYGSI--GKGQEGYFPANHVASET   63 (69)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEEECSSSEEEEEE--ETTEEEEEEGGGEEEHH
T ss_pred             EEEECccCCCCCcC-------cCCCCCCCEEEEEEecCCCeEEEEe--CCCCEEEEchHHeEECc
Confidence            57899999998765       6999999999999999999999985  36899999999997543

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=7.1e-11  Score=92.79  Aligned_cols=55  Identities=24%  Similarity=0.549  Sum_probs=48.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++..+++||.++.  .+++.|+||++|+++
T Consensus        20 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~--~~g~~G~~P~~yv~~   74 (85)
T 2yuq_A           20 TVVIALYDYQTNDPQ-------ELALRRNEEYCLLDSSEIHWWRVQD--RNGHEGYVPSSYLVE   74 (85)
T ss_dssp             CEEEESSCCCCSCSS-------BCCCCBTEEEEEEECCSSSEEEEEC--SSSCEEEEETTTCEE
T ss_pred             eEEEECcCCCCCCCC-------cCCCCCCCEEEEEEecCCCeEEEEE--CCCCEEEEehHHeEE
Confidence            468999999998765       6999999999999999999999984  368999999999975

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.09  E-value=9.5e-11  Score=86.61  Aligned_cols=54  Identities=28%  Similarity=0.725  Sum_probs=47.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.   .++.|+||++|++.
T Consensus         6 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            6 RRVRALYDFEAVEDN-------ELTFKHGELITVLDDSDANWWQGEN---HRGTGLFPSNFVTT   59 (62)
T ss_dssp             EEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEES
T ss_pred             eEEEECccCCCCCcC-------CcCCCCCCEEEEEEeCCCCEEEEEE---CCCEEEechhHEEE
Confidence            368999999998765       6999999999999999999999985   36799999999863

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.08  E-value=1.1e-10  Score=88.48  Aligned_cols=56  Identities=25%  Similarity=0.605  Sum_probs=47.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCce---eeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSA---GLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~---GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.| ++.+++||.++....+++.   |+||++|+++
T Consensus        11 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~   69 (72)
T 2kgt_A           11 PKYVGLWDFKSRTDE-------ELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHNYLAE   69 (72)
T ss_dssp             CEEECCTTCBCSSTT-------SCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTTTSEE
T ss_pred             cEEEEcccCCCCCcC-------CcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHhHEEE
Confidence            478999999998765       699999999999 8889999999975324788   9999999864

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.08  E-value=8.5e-11  Score=85.12  Aligned_cols=54  Identities=22%  Similarity=0.476  Sum_probs=47.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +.++|+|||.+..++       +|+|++||++.|+.+.+++||.+..   +++.|+||++|+++
T Consensus         2 ~~a~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv~~   55 (58)
T 4e6r_A            2 IPAFVXFAYVAERED-------ELSLVXGSRVTVMEXCSDGWWRGSY---NGQIGWFPSNYVLE   55 (58)
T ss_dssp             EEEEECSCBCCCSTT-------BCCBCTTCEEEEEEECTTSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCC-------EeeEeCCCEEEEeEcCCCCEEEEEE---CCcEEEEehHHEEE
Confidence            357899999998765       6999999999999999999999953   67899999999864

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.08  E-value=9.3e-11  Score=86.54  Aligned_cols=54  Identities=30%  Similarity=0.652  Sum_probs=46.4

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++.++ +||.++.. .+++.|+||++|++
T Consensus         7 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~-~Ww~g~~~-~~g~~G~~P~~yv~   60 (62)
T 2iim_A            7 NLVIALHSYEPSHDG-------DLGFEKGEQLRILEQSG-EWWKAQSL-TTGQEGFIPFNFVA   60 (62)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCS-SEEEEEET-TTCCEEEEEGGGEE
T ss_pred             cEEEEcccCCCCCCC-------CcCCCCCCEEEEEEcCC-CEEEEEEC-CCCCEEEEEHHHEE
Confidence            368999999998765       69999999999999865 99999953 26899999999985

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.08  E-value=8.2e-11  Score=87.22  Aligned_cols=54  Identities=31%  Similarity=0.583  Sum_probs=47.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +.++|+|||.+..++       +|+|++||+|.|+++.+++||.++.   +++.|+||++|++.
T Consensus        10 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   63 (65)
T 3ulr_B           10 ITAIALYDYQAAGDD-------EISFDPDDIITNIEMIDDGWWRGVC---KGRYGLFPANYVEL   63 (65)
T ss_dssp             SCEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             eEEEEEeeECCCCcC-------EeeEecCCEEEEEEecCCCEEEEEE---CCcEEEEehHHeEE
Confidence            468999999998765       6999999999999999999999984   57899999999853

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=8.6e-11  Score=90.35  Aligned_cols=56  Identities=18%  Similarity=0.377  Sum_probs=48.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC-CCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV-AGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~-~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+. ++       +|+|++||+|.|+++.+++||+++..+. +++.|+||++|+++
T Consensus        11 ~~~~alydy~~~-~~-------eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~yv~~   67 (75)
T 2egc_A           11 DVYVSIADYEGD-EE-------TAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEK   67 (75)
T ss_dssp             EEEEECSCBCCC-SS-------SCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGGGEEE
T ss_pred             eEEEECCCcCCC-CC-------cCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehHHCEE
Confidence            468999999997 54       6999999999999999999999997533 36899999999875

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=1.1e-10  Score=87.99  Aligned_cols=54  Identities=19%  Similarity=0.596  Sum_probs=47.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   61 (68)
T 2dl4_A            8 NTYVALYKFVPQENE-------DLEMRPGDIITLLEDSNEDWWKGKI---QDRIGFFPANFVQR   61 (68)
T ss_dssp             CEEEESSCCCCSSTT-------BCCCCTTCEEEEEECCCSSEEEEEC---SSCEEEEETTTEEE
T ss_pred             CEEEEeeeECCCCcC-------CcCCCCCCEEEEEEeCCCCEEEEEE---CCcEEEEehHHeEE
Confidence            367899999998765       6999999999999998999999983   57899999999864

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.08  E-value=9.3e-11  Score=89.16  Aligned_cols=54  Identities=30%  Similarity=0.698  Sum_probs=47.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+...  +++||.++.   +++.|+||++|++.
T Consensus         3 ~~~~Alydy~a~~~~-------eLs~~~Gd~i~vl~~~~~~~gWw~g~~---~g~~G~~P~~yV~~   58 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGEL---NGRRGVFPDNFVKL   58 (69)
T ss_dssp             EEEEESSCBCCCSTT-------BCCBCTTCEEEEEESCCSSTTEEEEEE---TTEEEEEEGGGEEE
T ss_pred             cEEEEcccCCCCCCC-------ccccCCCCEEEEEEcCCCCCCEEEEEE---CCcEEEecHHHEEE
Confidence            367999999998765       6999999999999986  889999985   68999999999864

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=7.4e-11  Score=91.69  Aligned_cols=55  Identities=27%  Similarity=0.480  Sum_probs=47.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++ .+.+||.++.. .+++.|+||++|+++
T Consensus        18 ~~~~Alydy~a~~~~-------eLs~~~Gd~i~v~~-~~~~Ww~~~~~-~~g~~G~~P~~yv~~   72 (79)
T 2cud_A           18 DFLAVLSDYPSPDIS-------PPIFRRGEKLRVIS-DEGGWWKAISL-STGRESYIPGICVAR   72 (79)
T ss_dssp             CEEEESSCSSCTTTS-------CCSSCTTCEEEEEE-EETTEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             eEEEEccCCCCCCCC-------cCCCCCCCEEEEEe-cCCCeEEEEEC-CCCCEEEeeHHHeEE
Confidence            368999999998765       69999999999998 57799999964 257999999999864

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.07  E-value=7.8e-11  Score=94.97  Aligned_cols=61  Identities=25%  Similarity=0.505  Sum_probs=50.2

Q ss_pred             eeeeeccccCCCCCCCCcC-cCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPC-AQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc-~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||++..++..|| .+.+|+|++||+|.|+++. +.+||+++.   +++.|+||++|++.
T Consensus        18 ~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~---~g~~G~~P~~yv~~   80 (97)
T 2csq_A           18 RIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGET---CARLGLIPCNMVSE   80 (97)
T ss_dssp             EEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEE---TTEEEEEETTTSEE
T ss_pred             eEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEE---CCcEEEEehHHeEE
Confidence            4689999999986555544 3568999999999999764 466999986   58999999999975

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.07  E-value=1.1e-10  Score=87.48  Aligned_cols=56  Identities=21%  Similarity=0.447  Sum_probs=48.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||++.|+.+.+++||.++..+ .++.|+||++|++.
T Consensus         7 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~~yv~~   62 (67)
T 2o9s_A            7 GEAIAKFNFNGDTQV-------EMSFRKGERITLLRQVDENWYEGRIPG-TSRQGIFPITYVDV   62 (67)
T ss_dssp             EEEEECSCBCCSSTT-------BCCBCTTCEEEEEEECSSSEEEEECTT-SSCEEEEEGGGEEE
T ss_pred             EEEEECccCCcCCcC-------ccCCCCCCEEEEEEecCCCEEEEEECC-CCCEEEEChHHeEE
Confidence            468999999998765       699999999999999899999998532 46899999999864

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=9.8e-11  Score=89.12  Aligned_cols=54  Identities=28%  Similarity=0.586  Sum_probs=48.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +.++|+|||.+..++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus        10 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   63 (72)
T 2dl8_A           10 IEAIAKFDYVGRTAR-------ELSFKKGASLLLYQRASDDWWEGRH---NGIDGLIPHQYIVV   63 (72)
T ss_dssp             EEEEESSCBCCSSSS-------BCCBCTTCEEEEEEEEETTEEEEEE---TTEEEEECSSSEEE
T ss_pred             EEEEECccCCcCCCC-------EeccCCCCEEEEEeecCCCEEEEEE---CCEEEEEchHHeEE
Confidence            578999999998754       6999999999999998899999996   58999999999864

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.07  E-value=8.3e-11  Score=90.48  Aligned_cols=53  Identities=28%  Similarity=0.712  Sum_probs=47.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.   .++.|+||++|++
T Consensus        18 ~~~~Alydy~a~~~~-------eLsf~~Gd~i~Vl~~~~~gWw~g~~---~g~~G~fP~~yV~   70 (72)
T 2l0a_A           18 RKVRAIYDFEAAEDN-------ELTFKAGEIITVLDDSDPNWWKGET---HQGIGLFPSNFVT   70 (72)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEEETTEEEEEC---SSCEEECTTCCEE
T ss_pred             eEEEECCccCCCCCC-------ccCCCCCCEEEEEEecCCCEEEEEE---CCCEEEechhhCc
Confidence            468999999998765       6999999999999998999999984   4679999999985

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.07  E-value=1.2e-10  Score=90.64  Aligned_cols=54  Identities=30%  Similarity=0.534  Sum_probs=47.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCC-ceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN-WWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~-WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+++.+++ ||.++.   +++.|+||++|++.
T Consensus        11 ~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~gWw~g~~---~g~~G~fP~~yv~~   65 (80)
T 2i0n_A           11 KYARALKDYNVSDTS-------LLPFKRNDIITITFKDQENKWFMGQL---NGKEGSFPVDHVEI   65 (80)
T ss_dssp             CEEEESSCBCCCSSS-------SCCBCSSEEEEEEEESSSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             eEEEECCCCCcCCCC-------CcCCCCCCEEEEEEecCCCCEEEEEE---CCcEEEechHHEEE
Confidence            578999999998765       6999999999999998888 999984   57899999999864

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.3e-10  Score=87.46  Aligned_cols=54  Identities=37%  Similarity=0.746  Sum_probs=48.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++..+++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   61 (68)
T 1x2k_A            8 KVFRALYTFEPRTPD-------ELYFEEGDIIYITDMSDTNWWKGTS---KGRTGLIPSNYVAE   61 (68)
T ss_dssp             EEEEESSCCCCCSTT-------BCCCCSSCEEEEEECSCSSEEEEES---SSCEEEEETTTEEE
T ss_pred             EEEEECceECCCCCC-------cccCCCCCEEEEEEcCCCCEEEEEE---CCcEEEEehHHeEE
Confidence            368999999998764       6999999999999999999999984   68899999999864

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.07  E-value=9.2e-11  Score=88.94  Aligned_cols=56  Identities=23%  Similarity=0.442  Sum_probs=48.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      -+++|+|||.+..++       +|+|++||+|.|+...+++||.++.. ..++.|+||++|++.
T Consensus         7 ~~~~al~~y~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~~-~~g~~G~fP~~yv~~   62 (71)
T 2fpf_A            7 QTHRAIFRFVPRHED-------ELELEVDDPLLVELQAEDYWYEAYNM-RTGARGVFPAYYAIE   62 (71)
T ss_dssp             CCEEECSCBCCSSTT-------BCCBCTTCEEEEEEECTTSEEEEEET-TTTEEEEEEGGGEEE
T ss_pred             eEEEECeeECccCCC-------cccCcCCcEEEEeEecCCCEEEEEEC-CCCCEEEeehHHEEE
Confidence            468999999998765       69999999999999999999999853 268999999999864

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.07  E-value=1.5e-10  Score=88.76  Aligned_cols=53  Identities=25%  Similarity=0.393  Sum_probs=46.3

Q ss_pred             eeeeccccCCC--CCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPL--DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~--~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+.  .++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus        11 ~~~alydy~~~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv~~   65 (73)
T 2ebp_A           11 RARVHTDFTPSPYDTD-------SLKLKKGDIIDIISKPPMGTWMGLL---NNKVGTFKFIYVDV   65 (73)
T ss_dssp             EEEECSCBCCCTTCCS-------BCCBCSSCEEEEEECCSSSCEEEEC---SSCEEEECSTTEEE
T ss_pred             EEEEeeccCCCCCCCC-------ccCCCCCCEEEEEEeCCCCeEEEEE---CCCEEEEeHHHEEE
Confidence            68999999986  433       7999999999999999999999974   57899999999864

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.07  E-value=1.3e-10  Score=84.29  Aligned_cols=55  Identities=13%  Similarity=0.384  Sum_probs=46.6

Q ss_pred             eeeecccc-CCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNY-NPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDY-dp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+||| .+..++       +|+|++||+|.|+...+++||.++.. ..++.|+||++|+++
T Consensus         2 ~~~al~d~~~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPS-------ELPLKKGDVIYITREEPSGWSLGKLL-DGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTT-------BCCBCTTCEEEEEEECTTSEEEEEES-SCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCC-------cCCCCCCCEEEEEEecCCCeEEEEEC-CCCCEEEecHHHEEE
Confidence            36899999 676654       69999999999999999999999964 248999999999853

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.06  E-value=1.2e-10  Score=85.24  Aligned_cols=52  Identities=23%  Similarity=0.667  Sum_probs=46.0

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .++|+|||.+..++       +|+|++||+|.|+...  +++||.++.   +++.|+||++|++
T Consensus         5 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~~yv~   58 (60)
T 1oot_A            5 KAVALYSFAGEESG-------DLPFRKGDVITILKKSDSQNDWWTGRV---NGREGIFPANYVE   58 (60)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSCTTSEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEEECccCCcCCcC-------EeeEcCCCEEEEEEeCCCCCCeEEEEE---CCEEEEEeHHHEE
Confidence            57899999998754       6999999999999986  789999985   5899999999975

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.06  E-value=7.3e-11  Score=89.61  Aligned_cols=55  Identities=27%  Similarity=0.412  Sum_probs=47.7

Q ss_pred             eeeeccccCC-CCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNP-LDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp-~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+ ..++       +|+|++||+|.|+...+++||.++.. .+++.|+||++|++.
T Consensus         9 ~~~Alydy~~~~~~~-------eLsf~~Gd~i~v~~~~~~~W~~g~~~-~~g~~G~~P~~yv~~   64 (71)
T 2gqi_A            9 RVRAILPYTKVPDTD-------EISFLKGDMFIVHNELEDGWMWVTNL-RTDEQGLIVEDLVEE   64 (71)
T ss_dssp             CEEESSCCCCCTTSS-------CCCCCTTCBCCCCEECSSSCEEEECT-TTCCEEEECTTSEEE
T ss_pred             EEEECcccCCCCCCC-------CCCCCCCCEEEEEEecCCCEEEEEEC-CCCCEEEeeHHHEEE
Confidence            5799999999 6654       69999999999999999999999842 368999999999864

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.06  E-value=8.6e-11  Score=86.98  Aligned_cols=56  Identities=20%  Similarity=0.566  Sum_probs=47.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC-C----CceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV-A----GSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~-~----g~~GlIPS~~v~  128 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+...+++||.++.... +    ++.|+||++|++
T Consensus         2 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~   62 (65)
T 2oaw_A            2 ELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVK   62 (65)
T ss_dssp             EEEEECSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEE
T ss_pred             cEEEEcccCCccCCC-------CCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeE
Confidence            367999999998765       6999999999999999999999986411 1    789999999985

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.06  E-value=1.4e-10  Score=91.41  Aligned_cols=57  Identities=18%  Similarity=0.417  Sum_probs=47.9

Q ss_pred             eeeeecccc-CCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC---CCceeeecCChhHH
Q psy12793         66 IFVRAQFNY-NPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV---AGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDY-dp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~---~g~~GlIPS~~v~e  129 (352)
                      ..++|+||| .+..++       +|+|++||+|.|+++.+++||.++..+.   .++.|+||++|++.
T Consensus        19 ~~~~Alydy~~a~~~~-------eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~   79 (83)
T 2ke9_A           19 LKVRALKDFWNLHDPT-------ALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEV   79 (83)
T ss_dssp             EEEEESSCBCCCSCTT-------BCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEES
T ss_pred             eEEEEccccCCCCCCC-------cccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEE
Confidence            578999999 676654       6999999999999999999999996421   37899999999864

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.06  E-value=1.1e-10  Score=86.20  Aligned_cols=53  Identities=21%  Similarity=0.610  Sum_probs=46.8

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeec-cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~-~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||+|.|+.+ .+++||.++.   +++.|+||++|++.
T Consensus         3 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   56 (62)
T 2j6f_A            3 DYIVEYDYDAVHDD-------ELTIRVGEIIRNVKKLQEEGWLEGEL---NGRRGMFPDNFVKE   56 (62)
T ss_dssp             CEEECSCBCCSSTT-------BCCBCTTCEEEEEEECSSTTEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEECccCCcCCcC-------CcCCcCCCEEEEEEecCCCCEEEEEE---CCcEEEechHHEEE
Confidence            47899999998765       699999999999998 7889999984   58999999999864

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.06  E-value=1.4e-10  Score=83.35  Aligned_cols=51  Identities=31%  Similarity=0.593  Sum_probs=45.0

Q ss_pred             eeeccccCCCCCCCCcCcCcccccccCceEEEeeccC-CCceEEEEcCCCCceeeecCChhH
Q psy12793         68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D-~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      ++|+|||.+..++       +|+|++||+|.|+...+ ++||.++.   +++.|+||++|++
T Consensus         3 ~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~g~~---~g~~G~~P~~yv~   54 (54)
T 2a28_A            3 MEAIYAYEAQGDD-------EISIDPGDIITVIRGDDGSGWTYGEC---DGLKGLFPTSYCK   54 (54)
T ss_dssp             EEBCSCBCCCSTT-------BCCBCTTCEEEEEECCCSSSEEEEEE---TTEEEEEEGGGBC
T ss_pred             EEECccCCcCCCC-------CccCCCCCEEEEEEecCCCCEEEEEE---CCeEEEeeHHHcC
Confidence            6899999998765       69999999999999985 78999995   6899999999873

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.06  E-value=1.7e-10  Score=89.31  Aligned_cols=57  Identities=16%  Similarity=0.433  Sum_probs=48.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC--CCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV--AGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~--~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+...+++||.++..+.  .++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~   66 (80)
T 1ue9_A            8 EIAQVTSAYVASGSE-------QLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL   66 (80)
T ss_dssp             EEEEECSCCCCCSTT-------BCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEE
T ss_pred             eEEEECcccCCCCCC-------CCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEE
Confidence            478999999998765       6999999999999998999999997532  25899999999864

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.06  E-value=1.6e-10  Score=84.28  Aligned_cols=55  Identities=20%  Similarity=0.500  Sum_probs=47.4

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeec-cCCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~-~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+++|+|||.+..++       +|+|++||++.|++. .+++||.++.. .+++.|+||++|++
T Consensus         3 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~~g~~G~~P~~yv~   58 (60)
T 2v1q_A            3 ERGIVQYDFMAESQD-------ELTIKSGDKVYILDDKKSKDWWMCQLV-DSGKSGLVPAQFIE   58 (60)
T ss_dssp             CEEEECSCBCCCSTT-------BCCBCTTCEEEEEESSSCSSEEEEEET-TTCCEEEEEGGGEE
T ss_pred             cEEEEeeeECCCCCC-------CccCCCCCEEEEEeCCCCCCCEEEEEC-CCCCEEEEEHHHEE
Confidence            367999999998765       699999999999998 48899999963 26889999999975

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.06  E-value=1.1e-10  Score=88.05  Aligned_cols=54  Identities=20%  Similarity=0.620  Sum_probs=47.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++.+ ++||.++.  .+++.|+||++|++.
T Consensus         9 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~-~~Ww~~~~--~~g~~G~~P~~yv~~   62 (68)
T 2k2m_A            9 KWVLCNYDFQARNSS-------ELSVKQRDVLEVLDDS-RKWWKVRD--PAGQEGYVPYNILTP   62 (68)
T ss_dssp             CEEEESSCBCCCSSS-------BCCBCTTCEEEEEECS-SSEEEEEC--TTSCCEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCC-------cccCCCCCEEEEEEcC-CCeEEEEe--CCCCEEEEEhhhEEE
Confidence            468999999998765       6999999999999986 79999984  358999999999864

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.06  E-value=1.7e-10  Score=87.86  Aligned_cols=54  Identities=20%  Similarity=0.602  Sum_probs=47.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.. +++||.++..  +++.|+||++|++.
T Consensus         8 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~g~~~--~g~~G~~P~~yv~~   61 (72)
T 2jw4_A            8 VVVVAKFDYVAQQEQ-------ELDIKKNERLWLLDD-SKSWWRVRNS--MNKTGFVPSNYVER   61 (72)
T ss_dssp             EEEECSSCCCCSSTT-------SCCCCTTCEEEEEEC-SSSSEEEECT--TSCEEEECTTSCEE
T ss_pred             eEEEECcCCCcCCCC-------cccCCCCCEEEEEEC-CCCEEEEEEC--CCCEEEEEhhHEEE
Confidence            578999999998765       699999999999997 5699999843  68999999999864

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.06  E-value=1.4e-10  Score=88.96  Aligned_cols=56  Identities=23%  Similarity=0.459  Sum_probs=48.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+++.+++||.++.. .+++.|+||++|++.
T Consensus         6 ~~~~Alydy~a~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~~~-~~g~~G~~P~~yv~~   61 (73)
T 2lcs_A            6 QRAVALYDFEPENDN-------ELRLAEGDIVFISYKHGQGWLVAENE-SGSKTGLVPEEFVSY   61 (73)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEETTTEEEEECT-TSSCEEEEESTTEEE
T ss_pred             CEEEECccCCCCCCC-------ccCCcCCCEEEEEEEcCCCEEEEEEC-CCCCEEEeeHHHEEE
Confidence            467999999998765       69999999999999999999999853 247999999999975

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.06  E-value=1.2e-10  Score=84.74  Aligned_cols=54  Identities=24%  Similarity=0.504  Sum_probs=46.8

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .++|+|||.+..++       +|+|++||++.|+.+.+++||.++.. ..++.|+||++|++
T Consensus         3 ~~~al~d~~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv~   56 (59)
T 1yn8_A            3 RAVALYDFEPENDN-------ELRLAEGDIVFISYKHGQGWLVAENE-SGSKTGLVPEEFVS   56 (59)
T ss_dssp             EEEECSCBCCCSTT-------BCCBCTTCEEEEEEEEETTEEEEECT-TSSCEEEEEGGGEE
T ss_pred             EEEECccCCCCCCC-------CcCCCCCCEEEEEEcCCCCeEEEEEC-CCCCEEEEehHHeE
Confidence            57899999998765       69999999999999999999999843 24789999999975

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.06  E-value=5e-11  Score=89.33  Aligned_cols=55  Identities=31%  Similarity=0.648  Sum_probs=48.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+...+.+||.++.  .+++.|+||++|+++
T Consensus         9 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~   63 (67)
T 1aww_A            9 KKVVALYDYMPMNAN-------DLQLRKGDEYFILEESNLPWWRARD--KNGQEGYIPSNYVTE   63 (67)
T ss_dssp             CEEEBSSCCCCSSSS-------SCCCCSSCEEECCCCCSSSEECCBC--TTSCBCCEETTTBCC
T ss_pred             eEEEECccCCCCCCC-------CccCCCCCEEEEEEccCCCcEEEEE--CCCCEEEEchHhEEE
Confidence            468999999998765       6999999999999999999999984  368899999999864

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.06  E-value=1.3e-10  Score=86.10  Aligned_cols=53  Identities=28%  Similarity=0.725  Sum_probs=46.4

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+.  +++||.++.   +++.|+||++|++
T Consensus         7 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv~   61 (64)
T 2jte_A            7 EYCRTLFPYTGTNED-------ELTFREGEIIHLISKETGEAGWWKGEL---NGKEGVFPDNFAV   61 (64)
T ss_dssp             EEEEESSCBCCSSSS-------BCCBCTTCEEEEEESCSSSTTEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEEEECccCCccCCC-------ccCCCCCCEEEEEECCCCCCCEEEEEE---CCeEEEEeHHHEE
Confidence            468999999998765       6999999999999875  789999984   5899999999985

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.05  E-value=1.2e-10  Score=84.52  Aligned_cols=54  Identities=26%  Similarity=0.593  Sum_probs=46.4

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC-CCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D-~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .++|+|||.+..++       +|+|++||++.|+...+ ++||.++.. .+++.|+||++|++
T Consensus         3 ~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~g~~~-~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            3 ENKVLYAYVQKDDD-------EITITPGDKISLVARDTGSGWTKINND-TTGETGLVPTTYIR   57 (58)
T ss_dssp             CCEECSCBCCCSTT-------BCCBCTTCCEEEEECCSSSSEEEEEET-TTTEEEEEEGGGEE
T ss_pred             EEEEeeeECCcCCC-------cccCCCCCEEEEeEcCCCCCCEEEEEC-CCCCEEEEEHHHEE
Confidence            47899999998765       69999999999999886 799999963 26789999999874

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.05  E-value=1.5e-10  Score=86.97  Aligned_cols=54  Identities=24%  Similarity=0.523  Sum_probs=48.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   61 (68)
T 2djq_A            8 PRAKALCNYRGKNPG-------DLKFNKGDVILLRRQLDENWYQGEI---NGVSGIFPASSVEV   61 (68)
T ss_dssp             CEEEECSCCCSCCTT-------CCCCCTTCEEEEEECCCSSEEEEEE---TTEEEEEESSSEET
T ss_pred             eEEEECCCCCCCCcC-------CccCCCCCEEEEEEecCCCEEEEEE---CCcEEEeehHHEEE
Confidence            468999999998765       6999999999999998999999984   57899999999864

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.05  E-value=1e-10  Score=98.18  Aligned_cols=58  Identities=24%  Similarity=0.472  Sum_probs=51.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      ++++|+|||.+..++       +|+|++||+|.|+.+.+++||.++..+..++.|+||++|++..
T Consensus         4 ~~~~Alydy~a~~~~-------ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~nyv~~~   61 (120)
T 2kym_A            4 LFAVTLYEFKAERDD-------ELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRII   61 (120)
T ss_dssp             CEEEECSCBCCCSTT-------CCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEGGGEEEE
T ss_pred             EEEEEcccCCCCCCC-------ccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEchHHEEEc
Confidence            578999999998765       6999999999999999999999997445788999999999753

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.4e-10  Score=91.13  Aligned_cols=55  Identities=22%  Similarity=0.393  Sum_probs=48.4

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeec--cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK--DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~--~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..+++|+|||.+..++       +|+|++||+|.|+++  .+++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~~al~dy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~fP~~yv~~   64 (85)
T 2dlp_A            8 SGYVIALRSYITDNCS-------LLSFHRGDLIKLLPVATLEPGWQFGSA---GGRSGLFPADIVQP   64 (85)
T ss_dssp             CCEEEESSCBCCSSSS-------BCCBCTTCEEEECCCSCCCTTEEEEES---SSCEEEEETTSEEE
T ss_pred             CEEEEECCCCCccCcC-------CccCcCCCEEEEEEccCCCCCeEEEEE---CCEEEEechHHeEE
Confidence            3578999999998765       699999999999997  8899999984   57999999999875

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.05  E-value=1.7e-10  Score=86.90  Aligned_cols=55  Identities=16%  Similarity=0.339  Sum_probs=47.1

Q ss_pred             eeeeccccC-CCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYN-PLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYd-p~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||+ +..++       +|+|++||+|.|+...+++||.++.. ..++.|+||++|++.
T Consensus         4 ~~~alydy~~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~~-~~g~~G~~P~~yv~~   59 (69)
T 1ruw_A            4 KFEAAYDFPGSGSSS-------ELPLKKGDIVFISRDEPSGWSLAKLL-DGSKEGWVPTAYMTP   59 (69)
T ss_dssp             EEEESSCBCCCSCTT-------BCCBCTTCEEEEEEECTTSEEEEEET-TSSCEEEEEGGGEEE
T ss_pred             EEEEccccCCCCCCC-------cccCCCCCEEEEEEecCCCeEEEEEC-CCCCEEEEehHHeEE
Confidence            578999996 76654       69999999999999989999999963 248999999999864

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=1.9e-10  Score=88.90  Aligned_cols=55  Identities=24%  Similarity=0.564  Sum_probs=48.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC-CCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D-~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+.+.+ ++||.++..  +++.|+||++|++.
T Consensus        14 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~~--~g~~G~~P~~yv~~   69 (78)
T 2dl5_A           14 LTCKVVYSYKASQPD-------ELTIEEHEVLEVIEDGDMEDWVKARNK--VGQVGYVPEKYLQF   69 (78)
T ss_dssp             EEEEECSCBCCCSTT-------BCCBCSSEEEEEEECCSSSSEEEEECT--TCCEEEEETTTSCC
T ss_pred             cEEEEceeECCCCCC-------CCCCCCCCEEEEEeccCCCCcEEEEeC--CCCEEEEEhHHEEE
Confidence            568999999998765       69999999999999975 899999843  48999999999864

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=87.72  Aligned_cols=56  Identities=21%  Similarity=0.447  Sum_probs=48.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+.+.+++||.++..+ .++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~~yv~~   63 (70)
T 2ecz_A            8 GEAIAKFNFNGDTQV-------EMSFRKGERITLLRQVDENWYEGRIPG-TSRQGIFPITYVDV   63 (70)
T ss_dssp             BCEEESSCCCCCSTT-------BCCCCTTCBCEEEEEEETTEEEEEETT-TTEEEEECTTTEEE
T ss_pred             CEEEECccCCCCCcC-------CcCCCCCCEEEEEEecCCCeEEEEECC-CCCEEEEchHHEEE
Confidence            458999999998765       699999999999999889999999643 46899999999864

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.05  E-value=2e-10  Score=90.90  Aligned_cols=54  Identities=24%  Similarity=0.535  Sum_probs=46.9

Q ss_pred             eeeeeccccCCC--CCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPL--DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~--~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+.  .++       +|+|++||+|.|+++.+++||.++.   +++.|+||++|++.
T Consensus        17 ~~~~alydy~~~a~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~fP~~yv~~   72 (88)
T 2dbk_A           17 VFAKAIQKRVPCAYDKT-------ALALEVGDIVKVTRMNINGQWEGEV---NGRKGLFPFTHVKI   72 (88)
T ss_dssp             EEEEECSCBCCCTTCSS-------BCCBCTTCEEEEEEECTTSCEEEEC---SSCEEEECTTTEEE
T ss_pred             EEEEEcccccCCCCCCC-------cccCCCCCEEEEEEecCCCEEEEEe---CCCEEEEehHHeEE
Confidence            478999999965  443       6999999999999999999999973   57899999999865

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.04  E-value=1.5e-10  Score=84.93  Aligned_cols=54  Identities=22%  Similarity=0.637  Sum_probs=47.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||++.|+.+.+++||.++.   +++.|+||++|++.
T Consensus         7 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~---~g~~G~~P~~yv~~   60 (62)
T 3ngp_A            7 ELVLVLYDYQEKSPR-------ELTVKKGDILTLLNSTNKDWWKIEV---NGRQGFVPAAYLKK   60 (62)
T ss_dssp             CEEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEEECcCCCCCCCC-------CccCCCCCEEEEeEecCCCeEEEEE---CCEEEEEEHHHEEE
Confidence            468999999998754       6999999999999999999999984   57899999999853

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.04  E-value=1.6e-10  Score=84.50  Aligned_cols=54  Identities=30%  Similarity=0.655  Sum_probs=45.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC-CCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D-~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      +.++|+|||.+..++       +|+|++||+|.|+...+ ++||.++.  ..++.|+||++|++
T Consensus         4 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~g~~--~~g~~G~~P~~yv~   58 (60)
T 2x3w_D            4 VRVRALYDYDGQEQD-------ELSFKAGDELTKLGEEDEQGWCRGRL--DSGQLGLYPANYVE   58 (60)
T ss_dssp             CEEEECSCBCCSSSS-------BCCBCTTCEEEECSCCCSSSEEEEEC--SSCCEEEEEGGGEE
T ss_pred             CEEEECcccCccCCC-------cccCCCCCEEEEEEccCCCCceEEEe--CCCCEEEecHHHEE
Confidence            357899999998765       69999999999999864 58999983  25899999999985

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.04  E-value=1.6e-10  Score=88.20  Aligned_cols=54  Identities=24%  Similarity=0.601  Sum_probs=48.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+++.+++||.++.   +++.|+||++|++.
T Consensus        14 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv~~   67 (73)
T 3c0c_A           14 PSCKALYDFEPENDG-------ELGFREGDLITLTNQIDENWYEGML---HGQSGFFPLSYVQV   67 (73)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             eEEEECccCCCCCCC-------CccCcCCCEEEEEEecCCCEEEEEE---CCCEEEeChHHEEE
Confidence            468999999998765       6999999999999999999999985   58999999999864

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.8e-10  Score=91.02  Aligned_cols=54  Identities=28%  Similarity=0.704  Sum_probs=47.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|++..+++||.++.   .++.|+||++|++.
T Consensus        18 ~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   71 (88)
T 1x2q_A           18 RKVRALYDFEAVEDN-------ELTFKHGEIIIVLDDSDANWWKGEN---HRGIGLFPSNFVTT   71 (88)
T ss_dssp             EEEEESSCCCCCSSS-------CCCCCSSCEEEEEECSCSSSEEEEE---TTEEEEECGGGEES
T ss_pred             eEEEEcccCCCCCcC-------ccCCCCCCEEEEEEeCCCCEEEEEE---CCcEEEEehHHEEE
Confidence            468999999998765       6999999999999998999999985   36799999999864

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.04  E-value=1.9e-10  Score=89.62  Aligned_cols=55  Identities=31%  Similarity=0.720  Sum_probs=48.5

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|+|||.+..++       +|+|++||+|.|+++.+++||.++... +++.|+||++|++.
T Consensus         7 ~~~Alydy~~~~~~-------eLs~~~Gd~i~vl~~~~~~Ww~g~~~~-~g~~G~~P~~yv~~   61 (79)
T 3cqt_A            7 LFEALYDYEARTED-------DLSFHKGEKFQILNSSEGDWWEARSLT-TGETGYIPSIYLAP   61 (79)
T ss_dssp             CEEESSCBCCCSTT-------BCCBCTTCEEEEEECTTSSEEEEEETT-TCCEEEEEGGGEEE
T ss_pred             EEEECccCCCCCcC-------cCCCCCCCEEEEEEecCCCeEEEEECC-CCCEEEeehHHeEE
Confidence            57899999998765       699999999999999999999999642 68899999999865

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.04  E-value=1.9e-10  Score=86.84  Aligned_cols=54  Identities=35%  Similarity=0.693  Sum_probs=47.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc---CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD---DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~---D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+...   +++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   64 (71)
T 2cre_A            8 LLARALYDNCPDCSD-------ELAFSRGDILTILEQHVPESEGWWKCLL---HGRQGLAPANRLQI   64 (71)
T ss_dssp             EEEEESSCCCCSSSS-------BCCCCSSCCEEEEESCCTTSTTEEEEES---SSCCEEEETTTEEE
T ss_pred             EEEEECcccCcCCCC-------CCCCCCCCEEEEeEcCCCCCCCcEEEEE---CCCEEEEehHHEEE
Confidence            578999999998754       6999999999999987   899999983   58899999999864

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.04  E-value=3e-11  Score=93.16  Aligned_cols=55  Identities=24%  Similarity=0.549  Sum_probs=48.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++..+++||.++.  .+++.|+||++|+++
T Consensus        21 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~--~~g~~G~~P~~yv~~   75 (77)
T 1awj_A           21 TLVIALYDYQTNDPQ-------ELALRCDEEYYLLDSSEIHWWRVQD--KNGHEGYAPSSYLVE   75 (77)
T ss_dssp             SCCCCCCCBCCCCTT-------SCCBCSSSCCSCCCTTSSSBCCCCC--SSSCCCCCBSTTCCC
T ss_pred             eEEEECccCCCCCcC-------CcCCCCCCEEEEEEecCCCCEEEEE--CCCCEEEEehHHEEE
Confidence            468999999998765       6999999999999999999999874  368899999999864

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=2e-10  Score=86.50  Aligned_cols=54  Identities=20%  Similarity=0.637  Sum_probs=46.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++++ ++||.++.  .+++.|+||++|++.
T Consensus         8 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~-~~Ww~~~~--~~g~~G~~P~~yv~~   61 (68)
T 1wxb_A            8 KYVKILYDFTARNAN-------ELSVLKDEVLEVLEDG-RQWWKLRS--RSGQAGYVPCNILGE   61 (68)
T ss_dssp             CCEECSSCBCCSSSS-------BCCBCTTCEEEEEECS-SSEEEEEC--TTSCEEEEETTTCCB
T ss_pred             EEEEECccCCCCCCC-------ccCCCCCCEEEEEEcC-CCEEEEEE--CCCCEEEEEHHHeEE
Confidence            368999999998765       6999999999999985 89999984  368999999999864

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.03  E-value=2.1e-10  Score=86.40  Aligned_cols=54  Identities=20%  Similarity=0.577  Sum_probs=47.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.++ ++||.++.  .+++.|+||++|++.
T Consensus         8 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~-~~Ww~~~~--~~g~~G~~P~~yv~~   61 (68)
T 1wxt_A            8 LKMQVLYEFEARNPR-------ELTVVQGEKLEVLDHS-KRWWLVKN--EAGRSGYIPSNILEP   61 (68)
T ss_dssp             EEEEESSCBCCCSSS-------BCCBCTTCEEEEEECS-SSEEEEEC--TTSCEEEEEGGGEEC
T ss_pred             eEEEECceECCCCcC-------cCCCCCCCEEEEEEcC-CCEEEEEE--CCCCEEEEEhHHcEE
Confidence            468999999998765       6999999999999985 89999984  468999999999864

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.03  E-value=1.9e-10  Score=84.70  Aligned_cols=56  Identities=23%  Similarity=0.497  Sum_probs=48.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.. .+++.|+||++|++.
T Consensus         7 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~~-~~g~~G~~P~~yv~~   62 (64)
T 4f14_A            7 RTYRAMYDYSAQDED-------EVSFRDGDYIVNVQPIDDGWMYGTVQ-RTGRTGMLPANYIEF   62 (64)
T ss_dssp             -CEEESSCBCCCSTT-------BCCBCTTCEEEEEEECSSSEEEEEET-TTTEEEEEEGGGEEE
T ss_pred             EEEEECeeeCCcCCC-------cCCCCCCCEEEEEEeCCCCeEEEEEC-CCCCEEEEeHHHeEE
Confidence            367999999998765       69999999999999999999999963 268899999999853

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.03  E-value=1.8e-10  Score=86.38  Aligned_cols=55  Identities=27%  Similarity=0.546  Sum_probs=47.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.  .+++.|+||++|++.
T Consensus        11 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~   65 (68)
T 1s1n_A           11 EEYIAVGDFTAQQVG-------DLTFKKGEILLVIEKKPDGWWIAKD--AKGNEGLVPRTYLEP   65 (68)
T ss_dssp             EEEEECSCBCCSSSS-------CCCBCSSEEEEECSCCSSSEEEEEC--SSSCEEEEESTTEEE
T ss_pred             CEEEEcccCCCCCCC-------cCCCCCCCEEEEEEcCCCCeEEEEE--CCCCEEEEehHHeEE
Confidence            356799999998765       6999999999999998899999984  368999999999863

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.03  E-value=1.9e-10  Score=84.59  Aligned_cols=54  Identities=30%  Similarity=0.613  Sum_probs=46.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCcee-eecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAG-LIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~G-lIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.   .++.| +||++|++.
T Consensus         4 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~gG~~P~~yv~~   58 (61)
T 1y0m_A            4 SAVKALFDYKAQRED-------ELTFTKSAIIQNVEKQDGGWWRGDY---GGKKQLWFPSNYVEE   58 (61)
T ss_dssp             CCEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEEGGGEEE
T ss_pred             CEEEECcCCCcCCCC-------CcCCcCCCEEEEEEecCCCEEEEEE---CCeEEEEEChHHcEE
Confidence            468999999998765       6999999999999999999999985   35565 999999853

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=1.4e-10  Score=89.28  Aligned_cols=54  Identities=26%  Similarity=0.607  Sum_probs=48.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++.
T Consensus        11 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   64 (76)
T 2epd_A           11 VEAVACFAYTGRTAQ-------ELSFRRGDVLRLHERASSDWWRGEH---NGMRGLIPHKYITL   64 (76)
T ss_dssp             EEEEESSCEECSSTT-------BCEECTTCEEEEEEEEETTEEEEEE---TTEEEEEESSSEEC
T ss_pred             EEEEECcCCCCCCCC-------ccCCCCCCEEEEEEeCCCCEEEEEE---CCcEEEEehHHEEE
Confidence            468999999998754       6999999999999998899999985   57999999999864

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.03  E-value=1.6e-10  Score=88.44  Aligned_cols=55  Identities=33%  Similarity=0.788  Sum_probs=46.4

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC-----CCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-----HNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D-----~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+.+|+|+|.|+.++      .+|+|++||+|.|+++.+     ++||+++..  +++.|+||++|++
T Consensus         8 ~~~~aly~y~a~~~~------dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~--~G~~G~~PsnyV~   67 (69)
T 1nm7_A            8 HFARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRTK--NGNIGYIPYNYIE   67 (69)
T ss_dssp             -CEEECSCCCCSSTT------SCCCCCTTCEEEECCSSSSSCCSSSCEEEEET--TTEEEEECGGGEE
T ss_pred             eEEEEEecccCCCCC------CccCCCCCCEEEEEecCCCCCCCCCeeEEEeC--CCCEEEecHHHEE
Confidence            467899999998754      169999999999999876     499999953  5889999999985

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.03  E-value=1.4e-10  Score=85.72  Aligned_cols=54  Identities=28%  Similarity=0.647  Sum_probs=47.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||++.|+++.+++||.++.   +++.|+||++|+++
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv~~   61 (65)
T 3u23_A            8 RQCKVLFEYIPQNED-------ELELKVGDIIDINEEVEEGWWSGTL---NNKLGLFPSNFVKE   61 (65)
T ss_dssp             CEEEECSCBCCSSTT-------BCCBCTTCEEEEEEEEETTEEEEEE---TTEEEEEEGGGEEE
T ss_pred             eEEEEeeeeCCCCcC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCCEEEeehHHEEE
Confidence            468999999998754       6999999999999998899999984   57899999999864

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.03  E-value=2.6e-10  Score=85.45  Aligned_cols=54  Identities=26%  Similarity=0.544  Sum_probs=47.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv~~   61 (68)
T 2dl3_A            8 RPARAKFDFKAQTLK-------ELPLQKGDIVYIYKQIDQNWYEGEH---HGRVGIFPRTYIEL   61 (68)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSTTEEEEEC---SSCEEEEETTTEEE
T ss_pred             cEEEECccCCCCCcC-------CccCCCCCEEEEeEecCCCEEEEEE---CCCEEEEchHHEEE
Confidence            468999999998765       6999999999999998999999983   58899999999864

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.03  E-value=2e-10  Score=86.60  Aligned_cols=54  Identities=19%  Similarity=0.532  Sum_probs=47.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+++.+++||.++.   +++.|+||++|++.
T Consensus        14 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv~~   67 (72)
T 4glm_A           14 TYGVALYRFQALEPN-------ELDFEVGDKIRILATLEDGWLEGSL---KGRTGIFPYRFVKL   67 (72)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEEECSTTEEEEEE---TTEEEEEEGGGEEE
T ss_pred             eEEEECccCCCCCCC-------cCCCCCCCEEEEEEccCCCEEEEEE---CCcEEEEChHHeEE
Confidence            468999999998765       6999999999999999999999994   57899999999864

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.02  E-value=2.3e-10  Score=87.85  Aligned_cols=55  Identities=27%  Similarity=0.678  Sum_probs=48.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++..
T Consensus        11 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~~   65 (76)
T 1ujy_A           11 LIVKARFNFKQTNED-------ELSVCKGDIIYVTRVEEGGWWEGTL---NGRTGWFPSNYVREI   65 (76)
T ss_dssp             EEEECCSCBCCSSTT-------SCCBCSSCCEEESSCCSSSCEEEEE---TTEEEEECTTTSEEC
T ss_pred             EEEEECccCCcCCCC-------cccCCCCCEEEEEEecCCCEEEEEE---CCCEEEechHHEEEC
Confidence            468999999998765       6999999999999998999999985   588999999998753

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.02  E-value=1.8e-10  Score=87.73  Aligned_cols=54  Identities=24%  Similarity=0.601  Sum_probs=48.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   61 (73)
T 2dbm_A            8 PCCRALYDFEPENEG-------ELGFKEGDIITLTNQIDENWYEGML---HGHSGFFPINYVEI   61 (73)
T ss_dssp             CEEEESSCBCCCSTT-------CCCBCTTCEEECCBCSSSSEEEEEE---TTEEEEEESSSEEE
T ss_pred             CEEEEccccCCCCCC-------CccCCCCCEEEEEEecCCCEEEEEE---CCCEEEechHHEEE
Confidence            468999999998765       6999999999999998999999985   58999999999874

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.02  E-value=1.2e-10  Score=87.67  Aligned_cols=55  Identities=22%  Similarity=0.510  Sum_probs=47.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+.+.+++||.++..  .+..|+||++|++.
T Consensus         8 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~--~~~~G~~P~~yv~~   62 (69)
T 2eqi_A            8 RTVKALYDYKAKRSD-------ELTFCRGALIHNVSKEPGGWWKGDYG--TRIQQYFPSNYVED   62 (69)
T ss_dssp             CEEEESSCBCCCSSS-------CCCBCTTCEEESCCCCSSSCEEEEET--TEEEEEECGGGEEE
T ss_pred             cEEEECeeECCCCcC-------ccCCCCCCEEEEEEcCCCCeEEEEEC--CCCEEEEchHHcEE
Confidence            468999999998765       69999999999999999999999853  34459999999864

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=3.4e-10  Score=85.21  Aligned_cols=56  Identities=20%  Similarity=0.453  Sum_probs=48.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.. .+++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~yv~~   63 (70)
T 2ct3_A            8 TPYRAMYQYRPQNED-------ELELREGDRVDVMQQCDDGWFVGVSR-RTQKFGTFPGNYVAP   63 (70)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTEEEEEEEECSSSCEEEEES-SSCCEEEECTTTEEE
T ss_pred             cEEEECccCCcCCcC-------CccCCCCCEEEEEEECCCCEEEEEEC-CCCCEEEechHHeEE
Confidence            468999999998765       69999999999999999999999863 258899999999864

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=2.5e-10  Score=88.82  Aligned_cols=54  Identities=26%  Similarity=0.434  Sum_probs=48.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus         9 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~gWw~g~~---~g~~G~~P~~yv~~   62 (80)
T 2ekh_A            9 TSYMTCSAYQKVQDS-------EISFPAGVEVQVLEKQESGWWYVRF---GELEGWAPSHYLVL   62 (80)
T ss_dssp             EEEEECSCBCCSSTT-------SCCBCTTCEEEEEEECTTSEEEEEE---TTEEEEEETTTEEC
T ss_pred             CEEEECCCCCCCCCC-------ccCcCCCCEEEEEEeCCCCeEEEEE---CCCEEEEEhHHeEE
Confidence            467899999998765       6999999999999999999999984   47899999999975

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.02  E-value=2.3e-10  Score=88.25  Aligned_cols=54  Identities=28%  Similarity=0.529  Sum_probs=48.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   61 (78)
T 2yuo_A            8 RRAKALLDFERHDDD-------ELGFRKNDIITIISQKDEHCWVGEL---NGLRGWFPAKFVEV   61 (78)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             eEEEECccCCCCCCC-------CccCCCCCEEEEEEecCCCEEEEEE---CCCEEEEehHHEEE
Confidence            468999999998765       6999999999999999999999884   58899999999874

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.02  E-value=1.7e-10  Score=91.01  Aligned_cols=54  Identities=22%  Similarity=0.610  Sum_probs=47.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++. +++||.++..  +++.|+||++|+++
T Consensus        32 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~g~~~--~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           32 VIVIAKWDYTAQQDQ-------ELDIKKNERLWLLDD-SKTWWRVRNA--ANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEEESSCCCCCSSS-------BCCCCTTEEEEEEEC-CSSEEEEECT--TSCEEEEEGGGBCC
T ss_pred             eEEEECccCCCCCCC-------EeccCCCCEEEEEec-CCCeEEEEEC--CCCEEEeehHHEEe
Confidence            578999999998765       699999999999997 6799999843  68999999999863

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=2.3e-10  Score=85.89  Aligned_cols=54  Identities=24%  Similarity=0.552  Sum_probs=47.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   61 (68)
T 1x2p_A            8 EEFVAIADYAATDET-------QLSFLRGEKILILRQTTADWWWGER---AGCCGYIPANHVGK   61 (68)
T ss_dssp             CEEEESSCCCCSSTT-------BCCCCTTCEEEEEECCSSSEEEEEC---TTCCEEEESSSEEC
T ss_pred             CEEEECceECCCCcC-------CcCCCCCCEEEEEEcCCCCEEEEEE---CCeEEEEehHHeEE
Confidence            357899999998765       6999999999999999999999984   57899999999864

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.02  E-value=2.8e-10  Score=85.88  Aligned_cols=56  Identities=20%  Similarity=0.492  Sum_probs=48.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+... +++||.++.. .+++.|+||++|++.
T Consensus         7 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~~g~~G~~P~~yv~~   63 (71)
T 2jt4_A            7 KRGIVQYDFMAESQD-------ELTIKSGDKVYILDDKKSKDWWMCQLV-DSGKSGLVPAQFIEP   63 (71)
T ss_dssp             EEEEECSCBCCSSTT-------BCCBCTTCEEEEEESSSCSSEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             CEEEEcccCCCCCCC-------cccCCCCCEEEEEECCCCCCCEEEEEC-CCCCeEEechHHeEE
Confidence            478999999998765       6999999999999987 8899999963 258999999999864

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.02  E-value=3.2e-10  Score=85.72  Aligned_cols=56  Identities=36%  Similarity=0.684  Sum_probs=46.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +.++|+|||.+..++.     .+|+|++||+|.|++. +++||.++..  +++.|+||++|++.
T Consensus         6 ~~~~alydy~~~~~~~-----~eLsf~~Gd~i~v~~~-~~~Ww~g~~~--~g~~G~~P~~yv~~   61 (70)
T 2vkn_A            6 YKAKALYPYDADDDDA-----YEISFEQNEILQVSDI-EGRWWKARRA--NGETGIIPSNYVQL   61 (70)
T ss_dssp             EEEEESSCBCCCSSST-----TBCCBCTTCEEEEECT-TSSEEEEECT--TSCEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCCC-----CcccCCCCCEEEEEEc-CCCeEEEEEC--CCCEEEEehHHEEE
Confidence            5689999999986431     3699999999999986 7899999843  68999999999864

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.02  E-value=2.1e-10  Score=87.03  Aligned_cols=54  Identities=20%  Similarity=0.614  Sum_probs=47.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++.
T Consensus         6 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   59 (73)
T 3thk_A            6 ELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAYVKK   59 (73)
T ss_dssp             CEEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEEECcCCCcCCCC-------ccCCCCCCEEEEEECCCCCeEEEEE---CCcEEEEehHHeEE
Confidence            468999999998765       6999999999999999999999984   47899999999875

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=2.6e-10  Score=89.03  Aligned_cols=55  Identities=20%  Similarity=0.493  Sum_probs=47.1

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCC-CceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-NWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~-~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||+|.|++..++ +||.++.. .+++.|+||++|+++
T Consensus        19 ~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~Ww~g~~~-~~g~~G~~P~~yv~~   74 (81)
T 1x6g_A           19 QCITKCEHTRPKPG-------ELAFRKGDVVTILEACENKSWYRVKHH-TSGQEGLLAAGALRE   74 (81)
T ss_dssp             EEEESSCBSSCCTT-------CCCBCTTCEEEEEECCCSSSEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             EEEECCCCCcCCCC-------CCCCCCCCEEEEEeccCCCCeEEEEeC-CCCCEEEEehHHEEE
Confidence            47899999998765       699999999999998766 99999842 368999999999874

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=2.5e-10  Score=88.25  Aligned_cols=53  Identities=30%  Similarity=0.628  Sum_probs=47.5

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||+|.|+++.+++||.++.   +++.|+||++|++.
T Consensus        19 ~~~al~dy~~~~~~-------eLsf~~Gd~i~v~~~~~~gWw~g~~---~g~~G~~P~~yv~~   71 (78)
T 2ed0_A           19 KVVAIYDYTKDKED-------ELSFQEGAIIYVIKKNDDGWYEGVM---NGVTGLFPGNYVES   71 (78)
T ss_dssp             EEEECSCBCCSSTT-------BCCBCSSCEEEEEEECSSSEEEEEE---TTEEEEEETTSEEE
T ss_pred             EEEECccCCccCcC-------cccccCCCEEEEEEeCCCCEEEEEE---CCcEEEeChHHEEE
Confidence            68999999998765       6999999999999999999999984   68999999999864

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.01  E-value=2.4e-10  Score=85.55  Aligned_cols=56  Identities=20%  Similarity=0.402  Sum_probs=46.9

Q ss_pred             eeeeeccccCC-CCCCCCcCcCcccccccCceEEEeec-cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNP-LDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp-~~d~~iPc~e~~LsF~kGDIL~Vl~~-~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+ ..++       +|+|++||+|.|+.+ .+++||.++.. ..++.|+||++|++.
T Consensus         7 ~~~~al~dy~a~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~~g~~G~~P~~yv~~   64 (67)
T 2kxc_A            7 QKVKTIFPHTAGSNKT-------LLSFAQGDVITLLIPEEKDGWLYGEHD-VSKARGWFPSSYTKL   64 (67)
T ss_dssp             CEEEESSCBCCSSCSS-------BCCBCTTCEEEESSSSCBTTEEEEEES-SSCCEEEEEGGGEEE
T ss_pred             EEEEEeecCCCCCCCC-------CCcCCCCCEEEEeECCCCCCcEEEEEC-CCCCEEEEehHHeEE
Confidence            46899999996 5543       699999999999996 78899999863 258899999999853

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.01  E-value=2.4e-10  Score=90.67  Aligned_cols=55  Identities=22%  Similarity=0.696  Sum_probs=48.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeec--cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK--DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~--~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+++  .+.+||.++.  .+++.|+||++|++.
T Consensus        18 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~   74 (91)
T 1wx6_A           18 HVVQTLYPFSSVTEE-------ELNFEKGETMEVIEKPENDPEWWKCKN--ARGQVGLVPKNYVVV   74 (91)
T ss_dssp             EEEEESSCCCCSSSS-------BCCCCTTCEEEEEECCSSCTTEEEEEC--TTCCEEEEEGGGEEE
T ss_pred             EEEEEeecCCcCCCC-------cccCCCCCEEEEEECCCCCCCcEEEEe--CCCCEEEEchHHEEE
Confidence            468999999998765       699999999999998  6889999984  368999999999875

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.01  E-value=2.7e-10  Score=85.31  Aligned_cols=57  Identities=18%  Similarity=0.355  Sum_probs=46.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeec-cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~-~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+.+++      .+|+|++||+|.|+.. .+++||.++.. .+++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~------e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~-~~g~~G~fP~~yv~~   65 (67)
T 3rnj_A            8 MRVKAIFSHAAGDNS------TLLSFKEGDLITLLVPEARDGWHYGESE-KTKMRGWFPFSYTRV   65 (67)
T ss_dssp             CEEEESSCBCCCSCT------TBCCBCTTCEEEECSSSCBTTEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             eEEEEccccCCCCCC------CCccCCCCCEEEEeeccCCCCCEEEEEC-CCCCEEEEEHHHeEE
Confidence            468999999987654      1499999999999965 57899999853 268999999999853

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.01  E-value=1.5e-10  Score=88.27  Aligned_cols=54  Identities=19%  Similarity=0.428  Sum_probs=46.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeec-cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~-~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+.. .+.+||.++.   +++.|+||++|++.
T Consensus        11 ~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   65 (72)
T 1ugv_A           11 RKAKALYACKAEHDS-------ELSFTAGTVFDNVHPSQEPGWLEGTL---NGKTGLIPENYVEF   65 (72)
T ss_dssp             CCEEESSCBCCCSSS-------BCCBCTTCEEBSCCBCSSTTEEEEES---SSCEEEEEGGGEEE
T ss_pred             cEEEEccccCCcCCC-------EeCCcCCCEEEEEEecCCCCeEEEEE---CCcEEEecHHHEEE
Confidence            368999999998765       699999999999984 6789999983   68999999999864

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=2.5e-10  Score=87.07  Aligned_cols=54  Identities=28%  Similarity=0.607  Sum_probs=47.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+.  |++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   63 (73)
T 2dm1_A            8 GTAVARYNFAARDMR-------ELSLREGDVVRIYSRIGGDQGWWKGET---NGRIGWFPSTYVEE   63 (73)
T ss_dssp             SEEEESSCBCCCSTT-------BCCBCTTCEEECCBSSSSSSSCEEEEE---TTEEEEECSSSEEE
T ss_pred             CEEEECccCCcCCCC-------cCCCCCCCEEEEEEecCCCCCeEEEEE---CCeEEEeehHHEEE
Confidence            368999999998765       6999999999999987  559999985   58999999999865

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.01  E-value=2.4e-10  Score=84.05  Aligned_cols=53  Identities=17%  Similarity=0.471  Sum_probs=45.4

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeec-cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~-~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|+|||.+..++       +|+|++||+|.|+.+ .+..||.++.   .++.|+||++|+++
T Consensus         7 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~~~~---~g~~G~~P~~yv~~   60 (63)
T 3eg3_A            7 LFVALYDFVASGDN-------TLSITKGEKLRVLGYNHNGEWCEAQT---KNGQGWVPSAYITP   60 (63)
T ss_dssp             EEEESSCBCCCSSS-------BCCBCTTCEEEEEEECTTSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEEcceECCCCCC-------ccCCCCCCEEEEEEeCCCCCeEEEEE---CCCeEEEehHHeEE
Confidence            67899999998765       699999999999994 4667999985   57899999999864

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.01  E-value=2.1e-10  Score=86.40  Aligned_cols=56  Identities=18%  Similarity=0.380  Sum_probs=48.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+...+++||.++.. .+++.|+||++|++.
T Consensus         8 ~~~~al~~y~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~yv~~   63 (70)
T 2cuc_A            8 NMFVALHTYSAHRPE-------ELDLQKGEGIRVLGKYQDGWLKGLSL-LTGRTGIFPSDYVIP   63 (70)
T ss_dssp             CCEECCSCBCCCSTT-------BCCBCTTCEEEEEEEEETTEEEEEET-TTCCEEEEEGGGCEE
T ss_pred             cEEEECeeECcCCCC-------cCCCCCCCEEEEEEecCCCeEEEEEC-CCCCEEEEchHHeEE
Confidence            368999999998765       69999999999999988999999853 368999999999864

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.01  E-value=2.4e-10  Score=89.95  Aligned_cols=56  Identities=29%  Similarity=0.583  Sum_probs=49.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++..+++||.++.. .+++.|+||++|++.
T Consensus         7 ~~~~Alydy~a~~~~-------eLsf~~Gd~i~vl~~~~~~Ww~g~~~-~~g~~G~~P~~yv~~   62 (84)
T 4ag1_C            7 TLFVALYDYNATRWT-------DLSFHKGEKFQILEFGPGDWWEARSL-TTGETGYIPSNYVAP   62 (84)
T ss_dssp             CEEEESSCBCCSBTT-------BCCBCTTCEEEEEECCSSSEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             EEEEEcccCCCCCCC-------cccccCCCEEEEEEecCCCeEEEEEC-CCCCEEEEehHHeEE
Confidence            468999999998764       69999999999999999999999964 367899999999875

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.01  E-value=3e-10  Score=85.50  Aligned_cols=54  Identities=28%  Similarity=0.709  Sum_probs=47.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus         9 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   62 (69)
T 2dil_A            9 QEYRALYDYTAQNPD-------ELDLSAGDILEVILEGEDGWWTVER---NGQRGFVPGSYLEK   62 (69)
T ss_dssp             CEEECCSCBCCSSSS-------SCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGCCB
T ss_pred             cEEEECccCCccCcC-------ccCCCCCCEEEEEECCCCCEEEEEE---CCCEEEEehHHeEE
Confidence            468999999998765       6999999999999998999999985   48999999999864

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.01  E-value=3.1e-10  Score=86.33  Aligned_cols=56  Identities=21%  Similarity=0.480  Sum_probs=48.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++.+ ++||.++....+++.|+||++|++.
T Consensus        12 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~~yv~~   67 (74)
T 2m0y_A           12 KYGVAFYNYDARGAD-------ELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPASYIHL   67 (74)
T ss_dssp             SCEEECSEECCCSSS-------BCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECGGGEEE
T ss_pred             eEEEEceeeCCCCcC-------cccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEehHHEEE
Confidence            478999999998765       6999999999999985 7899999754468999999999863

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=2.8e-10  Score=88.50  Aligned_cols=54  Identities=17%  Similarity=0.545  Sum_probs=48.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+.+.+||.++.   +++.|+||++|++.
T Consensus        11 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   64 (81)
T 2ysq_A           11 VSAEAVWDHVTMANR-------ELAFKAGDVIKVLDASNKDWWWGQI---DDEEGWFPASFVRL   64 (81)
T ss_dssp             EEEEESSCCCCSSSS-------SCCCCTTCEEEEEECCSSSEEEEEC---SSCEEEEEGGGEEE
T ss_pred             eEEEEeeeECCCCCC-------cCCCCCCCEEEEEEEcCcCEEEEEE---CCCEEEechHHEEE
Confidence            578999999998765       6999999999999999999999984   47899999999865

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.00  E-value=3.6e-10  Score=86.79  Aligned_cols=55  Identities=15%  Similarity=0.498  Sum_probs=47.7

Q ss_pred             eeeeeccccCCC-CCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPL-DDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~-~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+. .++       +|+|++||+|.|+..+ +.+||.++..  +++.|+||++|++.
T Consensus        10 ~~~~al~dy~~~~~~~-------eLs~~~Gd~i~v~~~~~~~gW~~g~~~--~g~~G~~P~~yv~~   66 (77)
T 2enm_A           10 TKARVMYDFAAEPGNN-------ELTVTEGEIITVTNPNVGGGWLEGKNN--KGEQGLVPTDYVEI   66 (77)
T ss_dssp             EEEEESSCCCCCTTSS-------BCCCCTTCEEEEEESCCSSSEEEEECT--TCCEEEEETTTEEE
T ss_pred             cEEEECccCCCCCCCC-------eecCCCCCEEEEeEccCCCCeEEEEEC--CCCEEEeehHHeEE
Confidence            478999999998 544       6999999999999986 7899999943  68999999999864

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.00  E-value=2.6e-10  Score=88.27  Aligned_cols=54  Identities=20%  Similarity=0.496  Sum_probs=47.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC----CCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD----HNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D----~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+.+    .+||.++.   +++.|+||++|++.
T Consensus        14 ~~~~Alydy~~~~~~-------eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   71 (79)
T 1uhc_A           14 QVYFAVYTFKARNPN-------ELSVSANQKLKILEFKDVTGNTEWWLAEV---NGKKGYVPSNYIRK   71 (79)
T ss_dssp             CCEEESSCBCCCSSS-------BCCBCTTCEEEEEESCCTTSCTTEEEEES---SSCEEEEEGGGEEE
T ss_pred             eEEEECccCCCCCCC-------ccCCCCCCEEEEEECCCCCCCCCeEEEEe---CCCEEEEchHHeEE
Confidence            367899999998765       69999999999999886    89999973   67899999999864

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=2.6e-10  Score=88.24  Aligned_cols=54  Identities=31%  Similarity=0.586  Sum_probs=47.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus        18 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   71 (79)
T 1x69_A           18 ITAVALYDYQAAGDD-------EISFDPDDIITNIEMIDDGWWRGVC---KGRYGLFPANYVEL   71 (79)
T ss_dssp             CCEEESSCCCCSSSS-------BCCCCTTCEEEEEEECSSSEEEEEE---TTEEEEEETTSEEE
T ss_pred             eEEEECccCCCCCCC-------CcCcCCCCEEEEeEecCCCeEEEEE---CCcEEEechHHEEE
Confidence            468999999998765       6999999999999998999999984   58999999999864

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.00  E-value=3e-10  Score=90.79  Aligned_cols=54  Identities=30%  Similarity=0.676  Sum_probs=47.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc-----CCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-----DHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-----D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+.     +++||.++..  +++.|+||++|++
T Consensus        30 ~~~~Alydy~a~~~~-------ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~--~g~~G~fP~nyV~   88 (89)
T 2rf0_A           30 PVWTAVFDYEAAGDE-------ELTLRRGDRVQVLSQDCAVSGDEGWWTGQLP--SGRVGVFPSNYVA   88 (89)
T ss_dssp             CEEEECSCBCCSSTT-------BCCBCTTCEEEEEECCHHHHSSTTEEEEECT--TCCEEEEEGGGEE
T ss_pred             cEEEECCccCCCCCC-------ccccCCCCEEEEEeccCCcccCCCEEEEEEC--CCCEEEEcHHHCc
Confidence            468999999998765       6999999999999985     8899999953  5899999999974

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.00  E-value=2.9e-10  Score=86.46  Aligned_cols=54  Identities=30%  Similarity=0.698  Sum_probs=47.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+...  +++||.++.   +++.|+||++|++.
T Consensus        10 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv~~   65 (73)
T 2k9g_A           10 DYCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGEL---NGRRGVFPDNFVKL   65 (73)
T ss_dssp             EEEEECSCBCCSSTT-------BCCBCTTCEEEEEECCSSSTTEEEEEE---TTEEEEEEGGGEEE
T ss_pred             cEEEECccCCCCCCC-------eeeECCCCEEEEEECCCCCCCEEEEEE---CCeEEEEchHHEEE
Confidence            578999999998765       6999999999999985  889999985   68999999999864

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.00  E-value=2.8e-10  Score=89.79  Aligned_cols=54  Identities=20%  Similarity=0.614  Sum_probs=47.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++..+++||.++.   +++.|+||++|++.
T Consensus        18 ~~~~Alydy~a~~~~-------eLsf~~Gd~i~Vl~~~~~gWw~g~~---~g~~G~~P~~yv~~   71 (83)
T 1neg_A           18 ELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAYVKK   71 (83)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             eEEEEccccCCCCCC-------ccccCCCCEEEEEEecCCCEEEEEE---CCeEEEEEHHHEEE
Confidence            468999999998765       6999999999999999999999963   68899999999875

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.00  E-value=3.2e-10  Score=86.04  Aligned_cols=56  Identities=20%  Similarity=0.381  Sum_probs=47.2

Q ss_pred             eeeeeccccCC-CCCCCCcCcCcccccccCceEEEeec-cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNP-LDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp-~~d~~iPc~e~~LsF~kGDIL~Vl~~-~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+ ..++       +|+|++||+|.|+.+ .+++||.++.. ..++.|+||++|++.
T Consensus         8 ~~~~al~dy~a~~~~~-------eLs~~~Gd~i~v~~~~~~~gWw~g~~~-~~g~~G~fP~~yv~~   65 (72)
T 1spk_A            8 QKVKTIFPHTAGNNKT-------LLSFAQGDVLTLLIPEEKDGWLYGEHD-TTKARGWFPSSYTKL   65 (72)
T ss_dssp             CEEECSSCBCCSSCSS-------BCCBCTTCEEEECCSSCBTTEEEEEET-TTCCEEEEEGGGCEE
T ss_pred             eEEEEeeeeCCCCCCC-------CCcCCCCCEEEEeEccCCCCcEEEEEC-CCCCEEEEehHHeEE
Confidence            46899999996 5543       699999999999987 78899999863 258899999999864

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.00  E-value=1.5e-10  Score=90.79  Aligned_cols=54  Identities=19%  Similarity=0.451  Sum_probs=47.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++.
T Consensus        19 ~~~~Alydy~a~~~~-------eLsf~~Gd~I~Vl~~~~~gWw~g~~---~g~~G~fP~nyV~~   72 (79)
T 1z9q_A           19 PRAEALFDFTGNSKL-------ELNFKAGDVIFLLSRINKDWLEGTV---RGATGIFPLSFVKI   72 (79)
T ss_dssp             CCEEESSCCCCSSTT-------BCCCCTTCCBCCCEESSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             eEEEEcCccCCCCCC-------cccccCCCEEEEeEecCCCEEEEEE---CCeEEEecHHHEEE
Confidence            468999999998765       6999999999999999999999984   58899999999864

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=2.3e-10  Score=90.58  Aligned_cols=55  Identities=24%  Similarity=0.523  Sum_probs=49.1

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+.++|+|||.+..++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus        17 ~~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~~P~~yv~~   71 (88)
T 2cub_A           17 NMPAYVKFNYMAERED-------ELSLIKGTKVIVMEKCSDGWWRGSY---NGQVGWFPSNYVTE   71 (88)
T ss_dssp             CEEEEESSCCCCCSTT-------BCCCCTTEEEEEEEECTTSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             CCEEEEccccCCCCCC-------CcCCCCCCEEEEEEccCCCeEEEEE---CCcEEEEehHHEEE
Confidence            3678999999998765       6999999999999999999999985   58999999999865

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.00  E-value=2.9e-10  Score=90.87  Aligned_cols=54  Identities=24%  Similarity=0.474  Sum_probs=47.4

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+++.  +++||.++.   +++.|+||++|++.
T Consensus         6 ~~~~Alydy~a~~~~-------eLsf~~Gd~i~v~~~~~~~~gWw~g~~---~g~~G~~P~~yv~~   61 (93)
T 1uff_A            6 SGYRALYPFEARNHD-------EMSFNSGDIIQVDEKTVGEPGWLYGSF---QGNFGWFPCNYVEK   61 (93)
T ss_dssp             CCEEESSCBCCCSSS-------CCCBCTTCEEEECSSCCCSSSEEEEEE---TTEEEEEETTTEEE
T ss_pred             EEEEECccCCCCCCC-------CcCCCCCCEEEEeEccCCCCCEEEEEE---CCCEEEechHHeEE
Confidence            468999999998765       6999999999999986  789999984   47899999999975

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=3.7e-10  Score=85.23  Aligned_cols=54  Identities=20%  Similarity=0.487  Sum_probs=46.0

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCC-CceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-NWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~-~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||+|.|++..+. +||.++.  .+++.|+||++|++.
T Consensus         9 ~~~alydy~~~~~~-------eLs~~~Gd~i~vl~~~~~~gW~~~~~--~~g~~G~~P~~yv~~   63 (70)
T 2ct4_A            9 HCVAIYHFEGSSEG-------TISMAEGEDLSLMEEDKGDGWTRVRR--KEGGEGYVPTSYLRV   63 (70)
T ss_dssp             EEEESSCBCCCSTT-------CCCBCTTCEEEEEECCSSSCEEEEEC--SSSCEEEEEGGGEEE
T ss_pred             EEEEcccCCCCCCC-------cCCCCCCCEEEEEeccCCCCeEEEEe--CCCCEEEEEhHHeEE
Confidence            57999999998765       699999999999998754 5999984  258999999999864

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.99  E-value=3.2e-10  Score=85.56  Aligned_cols=54  Identities=30%  Similarity=0.698  Sum_probs=47.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+...  +++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv~~   63 (70)
T 2da9_A            8 DYCKVIFPYEAQNDD-------ELTIKEGDIVTLINKDCIDVGWWEGEL---NGRRGVFPDNFVKL   63 (70)
T ss_dssp             EEEEECSCCCCSSTT-------BCCCCTTEEEEEEECCCSSTTEEEEEC---SSCEEEEEGGGEEE
T ss_pred             cEEEECcCCCCCCcC-------EeeEcCCCEEEEEECCCCCCCeEEEEE---CCcEEEechHHeEE
Confidence            468999999998765       6999999999999985  889999983   68999999999864

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=98.99  E-value=1.4e-10  Score=87.01  Aligned_cols=54  Identities=28%  Similarity=0.739  Sum_probs=47.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   61 (68)
T 1wi7_A            8 RRCQVAFSYLPQNDD-------ELELKVGDIIEVVGEVEEGWWEGVL---NGKTGMFPSNFIKE   61 (68)
T ss_dssp             CCEEESSCBCCSSTT-------BCCBCTTCEECCCEEEETTEEEECS---TTCCEEEETTSEEE
T ss_pred             CEEEECccCCcCCCC-------CccCcCCCEEEEEEcCCCCeEEEEE---CCcEEEEchHHEEE
Confidence            468999999998765       6999999999999998899999983   68899999999864

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=3e-10  Score=88.03  Aligned_cols=54  Identities=30%  Similarity=0.673  Sum_probs=47.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC--CCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD--HNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D--~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+.+  ++||.++.   +++.|+||++|++.
T Consensus        18 ~~~~al~dy~~~~~~-------eLsf~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   73 (80)
T 2d8h_A           18 IEVTALYSFEGQQPG-------DLNFQAGDRITVISKTDSHFDWWEGKL---RGQTGIFPANYVTM   73 (80)
T ss_dssp             EEEECSSCEECSSTT-------BCEECTTCEEEEEECCSCSSSEEEEEE---TTEEEEEEGGGCCB
T ss_pred             EEEEECccCCcCCCC-------eeeEcCCCEEEEeECcCCCCCeEEEEE---CCEEEEEchhHeEE
Confidence            468999999998765       69999999999999875  89999996   58999999999864

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=98.98  E-value=7.6e-10  Score=99.37  Aligned_cols=53  Identities=28%  Similarity=0.488  Sum_probs=46.1

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||+|.|++..+++||.++.   +++.|+||++|++.
T Consensus        83 ~~~al~dy~a~~~~-------eLs~~~Gd~i~vl~~~~~gWw~g~~---~g~~G~~P~~yv~~  135 (193)
T 1ng2_A           83 PYVAIKAYTAVEGD-------EVSLLEGEAVEVIHKLLDGWWVIRK---DDVTGYFPSMYLQK  135 (193)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             eeeeccccCCCCCC-------cccccCCCEEEEEEecCCCeEEEEE---CCCEEEEehHHeEE
Confidence            45788899887765       6999999999999998999999984   57899999999965

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=5.2e-10  Score=86.46  Aligned_cols=54  Identities=26%  Similarity=0.618  Sum_probs=47.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   61 (79)
T 2yun_A            8 RLCKALYSFQARQDD-------ELNLEKGDIVIIHEKKEEGWWFGSL---NGKKGHFPAAYVEE   61 (79)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSCEEEES---SSCEEEECSTTEEE
T ss_pred             CEEEECccCCcCCCC-------CcCCCCCCEEEEEEcCCCCEEEEEE---CCCEEEEEhHHeEE
Confidence            468999999998765       6999999999999998999999983   58899999999864

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.98  E-value=3e-10  Score=90.09  Aligned_cols=57  Identities=23%  Similarity=0.408  Sum_probs=48.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.. ..++.|+||++|++..
T Consensus        18 ~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~~g~~G~fP~~yv~~~   74 (90)
T 2yup_A           18 GEAVAQYTFKGDLEV-------ELSFRKGEHICLIRKVNENWYEGRIT-GTGRQGIFPASYVQVS   74 (90)
T ss_dssp             EEEEECSCCCCCSSS-------BCCCCTTCEEEESSCCCSSEEEEECT-TTCCEEEEEGGGEEEE
T ss_pred             eEEEEeecCCcCCcC-------cCCCCCCCEEEEEEEcCCCeEEEEEC-CCCCEEEEehHHeEEc
Confidence            357899999998765       69999999999999989999999852 2488999999999753

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=98.98  E-value=3.1e-10  Score=86.89  Aligned_cols=53  Identities=30%  Similarity=0.753  Sum_probs=46.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      +.++|+|||.+..++       +|+|++||+|.|+++. +.+||.++.   +++.|+||++|++
T Consensus        10 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~Ww~g~~---~g~~G~~P~~yv~   63 (74)
T 1gbq_A           10 MEAIAKYDFKATADD-------ELSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPKNYIE   63 (74)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEECCBCSSCSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             eEEEECccCCCCCCC-------eeeEcCCCEEEEeEecCCCCEEEEEE---CCCEEEEehHhEE
Confidence            468999999998765       6999999999999987 678999984   5789999999986

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=98.97  E-value=3.2e-10  Score=86.48  Aligned_cols=52  Identities=17%  Similarity=0.528  Sum_probs=45.2

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+ .++       +|+|++||+|.|+++.+++||.++.   +++.|+||++|++.
T Consensus         2 ~a~alydy~~-~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   53 (73)
T 2kxd_A            2 GAPPLPPYSA-GGR-------EVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAYVKK   53 (73)
T ss_dssp             CCCCCCSSCC-CSC-------CCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             eEEEeeeeCC-CCC-------EeeEcCCCEEEEEEecCCCEEEEEE---CCCEEEEehHHeEE
Confidence            3689999997 433       6999999999999999999999984   57999999999864

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.97  E-value=4.5e-10  Score=84.85  Aligned_cols=54  Identities=26%  Similarity=0.462  Sum_probs=47.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++..   ++.|+||++|++.
T Consensus         9 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~---g~~G~~P~~yv~~   62 (71)
T 2dnu_A            9 EKYVTVQPYTSQSKD-------EIGFEKGVTVEVIRKNLEGWWYIRYL---GKEGWAPASYLKK   62 (71)
T ss_dssp             EEEECSSCBCCSSTT-------BCCBCTTCEEEECCCCSSSEEEEEET---TEEEEEEGGGCEE
T ss_pred             CEEEECCccCCCCCC-------CCcCCCCCEEEEeECCCCCeEEEEEC---CcEEEEEHHHeEE
Confidence            467999999998765       69999999999999988999999963   7899999999864

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.96  E-value=3.1e-10  Score=85.74  Aligned_cols=53  Identities=21%  Similarity=0.511  Sum_probs=45.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+.. +++||.++.   +++.|+||++|++.
T Consensus         9 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~g~~---~g~~G~~P~~yv~~   61 (69)
T 1uhf_A            9 EEYIALYPYSSVEPG-------DLTFTEGEEILVTQK-DGEWWTGSI---GDRSGIFPSNYVKP   61 (69)
T ss_dssp             EEEECSSCBCCSSSS-------BCCBCTTCEEEECEE-ETTEEEECS---TTCCEEECGGGCEE
T ss_pred             CEEEEeeeECCCCcC-------ccCCCCCCEEEEEEe-CCCEEEEEe---CCcEEEEchHHeEE
Confidence            357999999998764       699999999999998 789999973   58899999999864

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.96  E-value=4.7e-10  Score=87.22  Aligned_cols=54  Identities=15%  Similarity=0.415  Sum_probs=47.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+..+  +++||.++.   +++.|+||++|++.
T Consensus        18 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   73 (81)
T 1x43_A           18 RKARVLYDYDAANST-------ELSLLADEVITVFSVVGMDSDWLMGER---GNQKGKVPITYLEL   73 (81)
T ss_dssp             EEEEESSCCCCSSTT-------BCCCCTTCEEEEECCTTCCTTEEEEEE---TTEEEEEEGGGEEE
T ss_pred             eEEEEcccCCCCCCC-------cCCCCCCCEEEEEEcCCCCCCcEEEEE---CCCEEEEehHHEEE
Confidence            468999999998765       6999999999999984  689999984   68899999999864

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=98.95  E-value=4.4e-10  Score=93.12  Aligned_cols=57  Identities=21%  Similarity=0.361  Sum_probs=46.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeec-cC--CCceEEEEcC-----CCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DD--HNWWQARKDN-----VAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~-~D--~~WWqaR~~~-----~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+.+ .+  ++||.++..+     ..++.|+||++|+++
T Consensus        23 ~~~~Alydy~a~~~~-------ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~   87 (108)
T 1i1j_A           23 SMAVALQDYMAPDCR-------FLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRE   87 (108)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEE
T ss_pred             eEEEECCccCCCCCC-------ccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEE
Confidence            468999999998765       699999999999998 23  3599999642     138899999999975

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=5.4e-10  Score=84.33  Aligned_cols=53  Identities=21%  Similarity=0.569  Sum_probs=47.1

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||++.|+.+.+++||.++.   .++.|+||++|++.
T Consensus        10 ~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   62 (70)
T 2ega_A           10 QYVVVSNYKKQENS-------ELSLQAGEVVDVIEKNESGWWFVST---SEEQGWVPATYLEA   62 (70)
T ss_dssp             CEECCSCCCCCSSS-------SCCCCTTCBCEEEEECTTSEEEEEC---SSCEEEEEGGGCEE
T ss_pred             EEEECceECCCCCC-------cccCCCCCEEEEEEccCCCeEEEEE---CCCEEEEehHHcEE
Confidence            57899999998765       6999999999999999999999984   47899999999864

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=98.95  E-value=4.9e-10  Score=86.53  Aligned_cols=56  Identities=32%  Similarity=0.736  Sum_probs=47.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCC-----CceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-----NWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~-----~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++      .+|+|++||+|.|+.+.+.     +||.++.  .+++.|+||++|++.
T Consensus        15 ~~~~alydy~~~~~~------~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~   75 (80)
T 2v1r_A           15 EFARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRT--KNGNIGYIPYNYIEI   75 (80)
T ss_dssp             EEEEESSCBCCSSTT------TBCCBCTTCEEEEEEEECTTSCEEEEEEEEC--TTSCEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCC------CEecCCCCCEEEEEECCCCCCCCCCcEEEEe--CCCCeEEEEHHHeEE
Confidence            478999999998654      1699999999999999876     8999984  368899999999864

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=98.94  E-value=3.1e-10  Score=91.24  Aligned_cols=55  Identities=27%  Similarity=0.735  Sum_probs=48.7

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..+++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++.
T Consensus        18 ~~~~~Alydy~a~~~~-------eLsf~~Gd~i~V~~~~~~gWw~g~~---~g~~G~fPsnyV~~   72 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDD-------ELELKVGDIIEVVGEVEEGWWEGVL---NGKTGMFPSNFIKE   72 (92)
T ss_dssp             SCEEEECSCBCCCSSS-------CCCBCSSCEEECCCGGGSSCBCCEE---TTEECCBCSSSEEC
T ss_pred             CeEEEEccccCCCCCc-------cccccCCCEEEEeEecCCCEEEEEE---CCeEEEeehHHEEE
Confidence            3578999999998765       6999999999999998999999985   68999999999864

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=98.94  E-value=9.3e-10  Score=89.75  Aligned_cols=56  Identities=29%  Similarity=0.655  Sum_probs=49.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++..+++||.++.. .+++.|+||++|++.
T Consensus        28 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~yv~~   83 (109)
T 2yt6_A           28 TIFVALYDYEARTTE-------DLSFKKGERFQIINNTEGDWWEARSI-ATGKSGYIPSNYVVP   83 (109)
T ss_dssp             CEEEESSCCCCSSTT-------SCCCCTTCEEEEEECSCTTCEEEEES-SSCCEEEECTTTEEE
T ss_pred             EEEEECccCCCCCCC-------ccCCCCCCEEEEEEccCCCcEEEEEC-CCCCEEEechHHcEE
Confidence            468999999998764       69999999999999999999999963 368899999999875

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=98.94  E-value=7.6e-10  Score=92.81  Aligned_cols=57  Identities=18%  Similarity=0.322  Sum_probs=48.9

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..+++|+|||.+..++       +|+|++||+|.|++++ ++||+++....+++.|+||++|++.
T Consensus        59 ~~~~~Alydy~a~~~~-------eLsf~~Gd~i~vl~~~-~gWw~g~~~~~~g~~G~fP~nyV~~  115 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAP-------QLSLQIGDVVRIQETC-GDWYRGYLIKHKMLQGIFPKSFIHI  115 (119)
T ss_dssp             CEEEEBCSCBCCCSTT-------BCCBCTTCEEEEEEEE-TTEEEEEESSCTTCEEEEEGGGBCC
T ss_pred             ceEEEEccccCCCCCC-------cccCcCCCEEEEEEcC-CCEEEEEECCCCCCEEEeChhHEEE
Confidence            3578999999998765       6999999999999986 5999999754368999999999863

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=98.93  E-value=8.1e-10  Score=87.39  Aligned_cols=55  Identities=31%  Similarity=0.640  Sum_probs=47.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||++.|++. +++||.++.. .+++.|+||++|++.
T Consensus         4 ~~~~Alydy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~g~~~-~~g~~G~~P~~yv~~   58 (90)
T 3reb_B            4 IIVVALYDYVSWSPD-------DLSFQKGDQMVVLEE-SGEWWKARSL-ATRKEGYIPSNYVAR   58 (90)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEEC-SSSEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             EEEEECCccCcCCcC-------cCCCCCCCEEEEEEe-CCCEEEEEEC-CCCCEEEEehhheEE
Confidence            478999999998765       699999999999998 5689999963 258899999999875

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=7.9e-10  Score=85.62  Aligned_cols=55  Identities=15%  Similarity=0.293  Sum_probs=47.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+.. +++||.++.. .+++.|+||++|++.
T Consensus        18 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~-~~gW~~g~~~-~~g~~G~fP~~yv~~   72 (79)
T 1x6b_A           18 PQVEITKAFFAKQAD-------EVTLQQADVVLVLQQ-EDGWLYGERL-RDGETGWFPEDFARF   72 (79)
T ss_dssp             CEEEESSCCCCCSSS-------BCCCCTTEEEEEEEE-ETTEEEEEET-TTCCEEEECGGGCEE
T ss_pred             CEEEECeeECCCCcC-------CcCCCCCCEEEEEEe-CCCEEEEEEC-CCCCEEEEchHHEEE
Confidence            357999999998765       699999999999999 8999999963 258899999999864

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.92  E-value=8e-10  Score=84.46  Aligned_cols=53  Identities=21%  Similarity=0.533  Sum_probs=46.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+..+ ++||.++.   +++.|+||++|++.
T Consensus        11 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~-~~Ww~g~~---~g~~G~~P~~yv~~   63 (74)
T 1j3t_A           11 LKAQALCSWTAKKDN-------HLNFSKHDIITVLEQQ-ENWWFGEV---HGGRGWFPKSYVKI   63 (74)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEEEC-SSEEEEES---TTCCCEEEGGGEEE
T ss_pred             eEEEECCCCCCCCCC-------ccCCCCCCEEEEEecC-CCEEEEEE---CCcEEEEchHHeEE
Confidence            578999999998765       6999999999999984 68999984   57899999999864

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=98.91  E-value=1.2e-09  Score=87.21  Aligned_cols=58  Identities=28%  Similarity=0.590  Sum_probs=47.9

Q ss_pred             ceeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC----CCceEEEEcCCCCceeeecCChhHH
Q psy12793         63 ILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD----HNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        63 ilqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D----~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .....++|+|||.+..++       +|+|++||+|.|+.+.+    .+||.++..  .++.|+||++|++.
T Consensus        15 ~~~~~~~alydy~a~~~~-------eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~--~~~~G~~P~~yv~~   76 (93)
T 1wxu_A           15 DDHVVARAEYDFVAVSDE-------EISFRAGDMLNLALKEQQPKVRGWLLASLD--GQTTGLIPANYVKI   76 (93)
T ss_dssp             SCBBCEEESSCBCCSSSS-------BCCBCSSCBCEECCTTTSCSCSSCEEEESS--SSSCEEECSTTEEE
T ss_pred             CCCEEEEECccCCCCCCC-------ccCcCCCCEEEEEECCCCCCCCCcEEEEeC--CcCEEEEehHHEEE
Confidence            334678999999998765       69999999999999887    699999732  33499999999974

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=98.90  E-value=1e-09  Score=96.57  Aligned_cols=54  Identities=31%  Similarity=0.741  Sum_probs=48.4

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+++.|++||+++.  .+++.|+||++|++
T Consensus       119 ~~~~alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~nyv~  172 (174)
T 3qwx_X          119 EVVVGTFKFTGERET-------DLPFEQGERLEILSKTNQDWWEARN--ALGTTGLVPANYVQ  172 (174)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEC--TTCCEEEEEGGGEE
T ss_pred             cEEEEecCcccCCCC-------ccccccCCEEEEEEccCCCeEEEEE--CCCCEEEEChHHEE
Confidence            478999999998765       6999999999999999999999994  36899999999985

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=98.89  E-value=1.4e-09  Score=85.08  Aligned_cols=55  Identities=29%  Similarity=0.674  Sum_probs=47.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+++. ++||.++.. .+++.|+||++|++.
T Consensus        26 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~-~~Ww~g~~~-~~g~~G~~P~~yv~~   80 (86)
T 2oi3_A           26 IIVVALYDYEAIHHE-------DLSFQKGDQMVVLEES-GEWWKARSL-ATRKEGYIPSNYVAR   80 (86)
T ss_dssp             EEEEESSCCCCSSSS-------CCCCCTTCEEEEEEES-SSEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             cEEEECccCCCCCCC-------cCcCCCCCEEEEEEcC-CCeEEEEEC-CCCCEEEEehHHcEE
Confidence            578999999998765       6999999999999988 499999964 268899999999865

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=98.89  E-value=9e-10  Score=87.44  Aligned_cols=56  Identities=32%  Similarity=0.736  Sum_probs=48.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCC-----CceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-----NWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~-----~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++      .+|+|++||+|.|+...+.     +||.++.  .+++.|+||++|++.
T Consensus        15 ~~~~alydy~~~~~~------~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~--~~g~~G~~P~~yv~~   75 (92)
T 1jqq_A           15 EFARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRT--KNGNIGYIPYNYIEI   75 (92)
T ss_dssp             EEEEESSBBCCSSTT------TBCCBCTTCEEEEEEEECTTSCEEEEEEEEE--TTSCEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCC------CCcCCCCCCEEEEEECCCCCCCCCCCeEEEe--CCCCEEEEehHHeEE
Confidence            468999999998754      2699999999999999876     9999985  368899999999874

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=98.87  E-value=2.9e-10  Score=86.17  Aligned_cols=54  Identities=28%  Similarity=0.593  Sum_probs=46.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCcee-eecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAG-LIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~G-lIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+.+.+++||.++.   +++.| +||++|++.
T Consensus         7 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~gG~~P~~yv~~   61 (71)
T 1hsq_A            7 CAVKALFDYKAQRED-------ELTFIKSAIIQNVEKQEGGWWRGDY---GGKKQLWFPSNYVEE   61 (71)
T ss_dssp             SCCCCSSCCCCSSSS-------SCCCCTTCCCBSCCCBTTTEECCBC---SSSCSCCEETTTCCS
T ss_pred             eEEEECCCCCcCCCC-------ccCCCCCCEEEEEEecCCCEEEEEE---CCeEEeEEChHHcEE
Confidence            467999999998765       6999999999999999999999984   35565 999999864

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=1.8e-09  Score=86.17  Aligned_cols=56  Identities=20%  Similarity=0.461  Sum_probs=47.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeec--cC--CCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK--DD--HNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~--~D--~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+..  .+  ++||.++.. .+++.|+||++|++.
T Consensus        17 ~~~~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~-~~g~~G~fP~~yv~~   76 (94)
T 2e5k_A           17 ETLQVIYPYTPQNDD-------ELELVPGDFIFMSPMEQTSTSEGWIYGTSL-TTGCSGLLPENYITK   76 (94)
T ss_dssp             EEEEECSCBCCSSSS-------BCCBCTTCEEEECGGGCCSTTTTEEEEEES-SSCCEEEEEGGGEEE
T ss_pred             eEEEECCcCCCCCCC-------CcCCCCCCEEEEEECcCCCCCCCcEEEEEC-CCCCEEEechHHeEE
Confidence            478999999998765       699999999999998  34  899999942 368899999999864

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.86  E-value=8.9e-10  Score=88.67  Aligned_cols=54  Identities=31%  Similarity=0.725  Sum_probs=47.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+...+++||.++.   +++.|+||++|++.
T Consensus        35 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   88 (98)
T 1udl_A           35 CQVIAMYDYAANNED-------ELSFSKGQLINVMNKDDPDWWQGEI---NGVTGLFPSNYVKM   88 (98)
T ss_dssp             EEEEESSCCCCSSTT-------SCCCCTTCEEEECBCCSSSEEBCBS---SSCBCCEETTSEEE
T ss_pred             eEEEECCCCCCCCCC-------ccCCcCCCEEEEEEecCCCEEEEEE---CCcEEEEehHHeEE
Confidence            468999999998765       6999999999999999999999872   68899999999864

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=98.86  E-value=1.1e-09  Score=100.97  Aligned_cols=58  Identities=38%  Similarity=0.860  Sum_probs=50.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHh
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  132 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~  132 (352)
                      .+++|+|||.+.+++       +|+|++||+|.|+++.|++||.++.  .+++.|+||++|+++...
T Consensus       137 ~~~~al~dy~~~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~~~~  194 (230)
T 2dvj_A          137 EYVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAED--SEGKRGMIPVPYVEKYRP  194 (230)
T ss_dssp             CCCBCCSCCCCSSSS-------SCCCCSSCBCCCCBCSCSSEEEEEC--TTSCEEEEEGGGSCCCCS
T ss_pred             eeEEEeeeecCCCCC-------CccCcCCCEEEEEEccCCCcEEEEe--CCCCEEEEehHHeEEcCC
Confidence            468999999998765       6999999999999999999999983  468999999999986443

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=98.85  E-value=3.2e-09  Score=81.78  Aligned_cols=59  Identities=19%  Similarity=0.517  Sum_probs=46.4

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++++++|.+....   + +.+|+|++||+|.|+++. +++||.++.. .+++.|+||++|++.
T Consensus        16 ~~~~a~~~~~~~~~~---~-~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~-~~g~~G~fP~nyV~~   75 (78)
T 1k1z_A           16 EVFQEYYGIPPPPGA---F-GGFLRLNPGDIVELTKAEAEHNWWEGRNT-ATNEVGWFPCNRVHP   75 (78)
T ss_dssp             EECSCBSSCSCCSSS---S-CCCCCBCTTCEEEEEECCSSCSCEEEEET-TTTEEEEECSTTEEE
T ss_pred             EEEEECCCCCCCCCC---C-CCccCCCCCCEEEEEEcCCCCCeEEEEEC-CCCCEEEEehHHeEE
Confidence            566788888875310   0 136999999999999995 8999999953 368899999999864

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=98.85  E-value=2.5e-09  Score=84.80  Aligned_cols=54  Identities=17%  Similarity=0.457  Sum_probs=46.0

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCC-CCceeeecCChh
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNV-AGSAGLIPSPEL  127 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~-~g~~GlIPS~~v  127 (352)
                      .+.++|||.++.+.       +|+|++||+++|++..  +++||.+|.... .++.||||++|+
T Consensus        19 ~~valydF~Ar~~~-------ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           19 LTVVLQDFSAAHSS-------ELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEECSSCBCCCSTT-------CCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             EEEEEeeecCCCCC-------eeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            47899999998765       6999999999999976  589999997432 457899999998

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=98.84  E-value=6.5e-10  Score=92.86  Aligned_cols=56  Identities=25%  Similarity=0.523  Sum_probs=47.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEee-----ccCCCceEEEEcC------C-CCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIIS-----KDDHNWWQARKDN------V-AGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~-----~~D~~WWqaR~~~------~-~g~~GlIPS~~v~  128 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+.     ..+++||.++...      + +++.|+||++|++
T Consensus        45 ~~~~Alydy~a~~~d-------ELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~  112 (115)
T 1bb9_A           45 FKVQAQHDYTATDTD-------ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTE  112 (115)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEE
T ss_pred             eEEEECCccCCCCCC-------ccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEE
Confidence            468999999998765       69999999999999     7889999998641      1 3789999999985

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=98.84  E-value=2.1e-09  Score=94.69  Aligned_cols=55  Identities=29%  Similarity=0.639  Sum_probs=48.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++. |++||+++.. .+++.|+||++|+++
T Consensus        13 ~~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~-~~~Ww~~~~~-~~g~~G~vP~~yv~~   67 (175)
T 4d8k_A           13 NLVIALHSYEPSHDG-------DLGFEKGEQLRILEQ-SGEWWKAQSL-TTGQEGFIPFNFVAK   67 (175)
T ss_dssp             CEEEESSCBCCCSSS-------BCCBCTTCEEEEEEC-CSSEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             cEEEEccCcCCcCCc-------ccccccCCEEEEEcc-CCCEEEEEEC-CCCceeeeccccccc
Confidence            478999999998765       699999999999998 6799999964 267899999999875

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=98.83  E-value=1.4e-09  Score=84.92  Aligned_cols=56  Identities=21%  Similarity=0.499  Sum_probs=46.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeec---------------cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK---------------DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~---------------~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|++.               ++.+||.++.. .+++.|+||++|++.
T Consensus         6 ~~~~Alydy~~~~~~-------eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~-~~g~~G~fP~~yV~~   76 (83)
T 3i5r_A            6 YQYRALYDYKKEREE-------DIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNE-TTGERGDFPGTYVEY   76 (83)
T ss_dssp             EEEEECSCBCCCSTT-------BCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEET-TTTEEEEEEGGGEEE
T ss_pred             cEEEEccccCCCCCC-------ccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeC-CCCCEEEEehHHEEE
Confidence            467899999998755       699999999999964               34589999853 258999999999864

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=98.80  E-value=3.6e-09  Score=91.32  Aligned_cols=54  Identities=26%  Similarity=0.638  Sum_probs=47.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+.+. +++||.++.   +++.|+||++|++.
T Consensus         6 ~~~~Alydy~a~~~~-------ELsf~~Gd~i~Vl~~~~~~gWw~g~~---~g~~G~fP~~yv~~   60 (142)
T 2kbt_A            6 GTAKARYDFCARDRS-------ELSLKEGDIIKILNKKGQQGWWRGEI---YGRIGWFPSNYVEE   60 (142)
T ss_dssp             CEEEESSCCCCSSSS-------BCCCCTTCEEEEEECCCSSSEEEEEE---TTEEEEEETTSEEE
T ss_pred             eEEEECCccCCCCCC-------cCCCCCCCEEEEEEecCCCCeEEEEE---CCeeEEechHHEEE
Confidence            368999999998765       6999999999999984 889999985   58899999999975

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=98.79  E-value=1.3e-08  Score=97.32  Aligned_cols=54  Identities=19%  Similarity=0.453  Sum_probs=45.7

Q ss_pred             eeeeeccccCCC--CCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPL--DDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~--~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.|.  .+       .+|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus       238 ~~~~al~d~~~~a~~~-------~eL~~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv~~  293 (304)
T 2eyz_A          238 IYARVIQKRVPNAYDK-------TALALEVGELVKVTKINVSGQWEGEC---NGKRGHFPFTHVRL  293 (304)
T ss_dssp             CCSCCSSCBCCCTTCS-------SCCCBCTTSCCEEEEECTTSCEEEEE---TTEEEECCCTTSCC
T ss_pred             EEEEEeeeecCCCCCC-------CeecccCCCEEEEEEecCCCeEEEEE---CCceEEechHHEEE
Confidence            367889999854  33       37999999999999999999999885   47999999999974

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.77  E-value=2.4e-09  Score=98.63  Aligned_cols=56  Identities=25%  Similarity=0.545  Sum_probs=48.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEee-----ccCCCceEEEEcC-------CCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIIS-----KDDHNWWQARKDN-------VAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~-----~~D~~WWqaR~~~-------~~g~~GlIPS~~v~  128 (352)
                      .+++|||||.+..++       +|+|++||+|.|+.     ..+++||.++...       .+++.|+||++|++
T Consensus       143 ~~~rALYdY~a~~~d-------ELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe  210 (213)
T 1mv3_A          143 FKVQAQHDYTATDTD-------ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTE  210 (213)
T ss_dssp             EEEEESSCBCCCSTT-------CCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEE
T ss_pred             eEEEECCCcCCCCCC-------cCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeE
Confidence            468999999998865       69999999999999     7789999999631       14789999999985

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=98.76  E-value=6.5e-09  Score=78.21  Aligned_cols=41  Identities=24%  Similarity=0.684  Sum_probs=36.0

Q ss_pred             ccccccCceEEEeec-cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         88 GIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        88 ~LsF~kGDIL~Vl~~-~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +|+|++||+|.|+++ .+.+||.++.. .+++.|+||++|++.
T Consensus        26 eLsf~~Gd~i~v~~~~~~~~Ww~g~~~-~~g~~G~fP~~yv~~   67 (70)
T 1gcq_C           26 FLRLNPGDIVELTKAEAEHNWWEGRNT-ATNEVGWFPCNRVHP   67 (70)
T ss_dssp             BCCBCTTCEEEEEECCTTCSEEEEEET-TTTEEEEEEGGGEEE
T ss_pred             cCCcCCCCEEEEEeCCCCCCCeEEEeC-CCCCEeEeehHHeEE
Confidence            799999999999999 68899999853 368899999999864

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=98.74  E-value=5.9e-09  Score=82.95  Aligned_cols=56  Identities=14%  Similarity=0.294  Sum_probs=45.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeec---------------cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK---------------DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~---------------~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+..               ++.+||.++.. .+++.|+||++|++.
T Consensus        12 ~~~~Alydy~a~~~~-------ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~-~~g~~G~fP~nyVe~   82 (90)
T 3o5z_A           12 FQYRALYPFRRERPE-------DLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNE-RTRQRGDFPGTYVEF   82 (90)
T ss_dssp             EEEEECSCBCCCSTT-------BCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             cEEEEeeeECCCCCC-------ccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeC-CCCCEEEeehHHEEE
Confidence            468999999998765       699999999999843               23489999842 258999999999864

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.70  E-value=3.4e-08  Score=89.04  Aligned_cols=91  Identities=22%  Similarity=0.353  Sum_probs=67.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHH-hhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLI-NKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  265 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~-~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r  265 (352)
                      .+.+++|+|||||||+|+.+.|. ...|. +...+..                                           
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~-~~~~~~~-------------------------------------------   61 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQKNN-IVKSVSV-------------------------------------------   61 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC----C-EEECCCE-------------------------------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCCCC-ccccccc-------------------------------------------
Confidence            57899999999999999999999 87764 4455655                                           


Q ss_pred             HHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHH
Q psy12793        266 TACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQR  340 (352)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  340 (352)
                                                   ++|.++.++.+|.+|+|++.+.|...+..+.|+++++...     ....++
T Consensus        62 -----------------------------~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  112 (231)
T 3lnc_A           62 -----------------------------TTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGNFYGVPRKNLE  112 (231)
T ss_dssp             -----------------------------ESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEECTTHH
T ss_pred             -----------------------------CCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccccCCCCHHHHH
Confidence                                         8999999999999999999999999999999999765432     224466


Q ss_pred             HHHHcCcccc
Q psy12793        341 HIVSCRKLVV  350 (352)
Q Consensus       341 ~~~~~~~~~~  350 (352)
                      .++..++.+|
T Consensus       113 ~~~~~~~~vi  122 (231)
T 3lnc_A          113 DNVDKGVSTL  122 (231)
T ss_dssp             HHHHHTCEEE
T ss_pred             HHHHcCCeEE
Confidence            7777776554

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=98.69  E-value=1.1e-08  Score=92.17  Aligned_cols=55  Identities=27%  Similarity=0.781  Sum_probs=48.9

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..+++|+|||.+..++       +|+|++||++.|+.+.|++||.++.   +|+.|+||++|++.
T Consensus       158 ~~~~~al~~y~~~~~~-------eL~~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv~~  212 (217)
T 1gri_A          158 PTYVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGAC---HGQTGMFPRNYVTP  212 (217)
T ss_dssp             CCEEEESSCCCCSSTT-------BCCCCTTCEEEEEECCSSSEEEEEC---SSCEEEEEGGGEEE
T ss_pred             ceEEEecCCccCCCCC-------cCCCCCCCEEEEEEeCCCCeEEEEE---CCeEEEEeHHHeEE
Confidence            3578999999998765       6999999999999999999999984   58999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.65  E-value=1.2e-07  Score=82.83  Aligned_cols=91  Identities=16%  Similarity=0.351  Sum_probs=73.8

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  266 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~  266 (352)
                      .+.+++|+|||||||+|+.+.|....|. +.+....                                            
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~~-~~~~~~~--------------------------------------------   40 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALAE-IKISISH--------------------------------------------   40 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSSS-EEECCCE--------------------------------------------
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCCC-eEEecee--------------------------------------------
Confidence            4678999999999999999999988773 3333444                                            


Q ss_pred             HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793        267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH  341 (352)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  341 (352)
                                                  ++|.++..+.+|..|+|.+...|..+...+.|++++....     ....++.
T Consensus        41 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   92 (205)
T 3tr0_A           41 ----------------------------TTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGTEKDWVLR   92 (205)
T ss_dssp             ----------------------------ECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHHHHHH
T ss_pred             ----------------------------ccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccchHHHHHH
Confidence                                        7888888889999999999999999999999999887543     2346777


Q ss_pred             HHHcCcccc
Q psy12793        342 IVSCRKLVV  350 (352)
Q Consensus       342 ~~~~~~~~~  350 (352)
                      ++..++.+|
T Consensus        93 ~l~~g~~vi  101 (205)
T 3tr0_A           93 QLKAGRDVL  101 (205)
T ss_dssp             HHHTTCEEE
T ss_pred             HHHcCCeEE
Confidence            888877654

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=98.64  E-value=2e-08  Score=93.49  Aligned_cols=56  Identities=30%  Similarity=0.699  Sum_probs=48.9

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  131 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r  131 (352)
                      ..++|+|||.+..++       +|+|++||++.|++..|++||.++.   +|+.|+||++|++...
T Consensus         3 ~~~~a~~~~~~~~~~-------el~~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~~~v~~~~   58 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDD-------ELAFSKGQIINVLNKEDPDWWKGEV---SGQVGLFPSNYVKLTT   58 (283)
T ss_dssp             EEEEESSCBCCSSTT-------BCCBCTTCEEEEEECCSTTEEEEEE---TTEEEEEEGGGEEEGG
T ss_pred             eEEEEccccCCCCCC-------cCCCCCCCEEEEEecCCCCEEEEEE---CCCCCcCCCccccccC
Confidence            468999999998765       6999999999999999999999984   5789999999997533

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=98.63  E-value=1.3e-08  Score=91.09  Aligned_cols=56  Identities=18%  Similarity=0.316  Sum_probs=48.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||++.|+++.++ ||.++....+++.|+||++|++.
T Consensus        18 ~~~~Alydf~~~~~~-------eLs~~~Gd~i~v~~~~~~-W~~g~~~~~~g~~G~fP~nyV~~   73 (184)
T 3a98_A           18 RHGVAIYNFQGSGAP-------QLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPKSFIHI   73 (184)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEEEETT-EEEEEETTEEEEEEEEEGGGEEE
T ss_pred             eEEEEeeeeCCCCCC-------CCCcCCCCEEEEEecCCC-EEEEEEecCCCceEEECcceEEE
Confidence            478999999998765       699999999999998775 99999754457899999999964

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=98.59  E-value=2.7e-08  Score=100.95  Aligned_cols=57  Identities=26%  Similarity=0.578  Sum_probs=49.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      ..++|+|||++.+++       +|+|++||++.|++..|++||+++... +|+.|+||++|+++.
T Consensus        86 ~~~~alyd~~~~~~~-------el~~~~gd~i~v~~~~~~~ww~~~~~~-~g~~G~~P~~yv~~~  142 (535)
T 2h8h_A           86 TTFVALYDYESRTET-------DLSFKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPSNYVAPS  142 (535)
T ss_dssp             -CEEESSCBCCCSSS-------BCCBCTTCEEEEEECSSSSEEEEEETT-TCCEEEEEGGGEEET
T ss_pred             cEEEEccccCCcCCC-------cCCcCCCCEEEEEEecCCCceEEEECC-CCcceEecchhhccc
Confidence            368999999998865       699999999999999999999999642 589999999999864

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.57  E-value=3.3e-08  Score=97.91  Aligned_cols=56  Identities=27%  Similarity=0.592  Sum_probs=49.2

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      +++|+|||.+..++       +|+|++||++.|+++.|++||+++... +|+.|+||++|+++.
T Consensus         4 ~~~al~~~~~~~~~-------el~~~~gd~~~v~~~~~~~ww~~~~~~-~g~~G~~P~~yv~~~   59 (452)
T 1fmk_A            4 TFVALYDYESRTET-------DLSFKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPSNYVAPS   59 (452)
T ss_dssp             EEEESSCBCCCSSS-------BCCBCTTCEEEESCCCSSSEEEEEETT-TCCEEEEEGGGEEET
T ss_pred             EEEECCccCCCCCC-------CCCccCCCEEEEeccCCCCceEEEEcC-CCcccccCccccccc
Confidence            57899999998865       699999999999999999999999642 589999999999753

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.56  E-value=3.3e-07  Score=79.92  Aligned_cols=91  Identities=25%  Similarity=0.445  Sum_probs=70.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC-CCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF-PDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  265 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~-p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r  265 (352)
                      .+.+|+|+||+||||+|+.+.|.... |+ +++.+.+                                           
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~~~-~~~~i~~-------------------------------------------   40 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDPSTS-YKYSISM-------------------------------------------   40 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCTTCC-EECCCCE-------------------------------------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhhCCC-eEEeccc-------------------------------------------
Confidence            46789999999999999999998876 42 3333333                                           


Q ss_pred             HHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHH
Q psy12793        266 TACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQR  340 (352)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  340 (352)
                                                   ++|.++..+.+|..|.|.+.+.|..++..+.++++.....     .....+
T Consensus        41 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~   91 (207)
T 2j41_A           41 -----------------------------TTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYYGTPVQYVK   91 (207)
T ss_dssp             -----------------------------ECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHH
T ss_pred             -----------------------------ccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeecCCCHHHHH
Confidence                                         6777777788899999999999999999999999886653     234456


Q ss_pred             HHHHcCcccc
Q psy12793        341 HIVSCRKLVV  350 (352)
Q Consensus       341 ~~~~~~~~~~  350 (352)
                      ..++.++.||
T Consensus        92 ~~l~~g~~vv  101 (207)
T 2j41_A           92 DTMDEGHDVF  101 (207)
T ss_dssp             HHHHTTCEEE
T ss_pred             HHHHcCCeEE
Confidence            6677776553

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.55  E-value=4e-08  Score=97.21  Aligned_cols=55  Identities=29%  Similarity=0.636  Sum_probs=48.2

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeec-cCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~-~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      +++|+|||.+..++       +|+|++||++.|++. .|++||.++.  ..|+.|+||++|+++.
T Consensus        13 ~~~aly~~~~~~~~-------el~~~~gd~i~v~~~~~~~~ww~~~~--~~g~~G~~P~~yv~~~   68 (450)
T 1k9a_A           13 ECIAKYNFHGTAEQ-------DLPFCKGDVLTIVAVTKDPNWYKAKN--KVGREGIIPANYVQKR   68 (450)
T ss_dssp             EEEESSCBCCSSSS-------BCCBCTTCEEEEEEECSSTTEEEEEC--TTCCEEEEEGGGEEEC
T ss_pred             EEEECCCcCccCCC-------cCCCCCCCEEEEeeccCCCCceEEEE--CCCceeeechhccccc
Confidence            58999999998865       699999999999998 6889999984  3689999999999753

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.54  E-value=3.7e-07  Score=82.47  Aligned_cols=92  Identities=27%  Similarity=0.488  Sum_probs=71.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHH
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  265 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r  265 (352)
                      ..+.+++|+||||+||+|+.+.|....|..+.+..+.                                           
T Consensus        21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~g~~~-------------------------------------------   57 (218)
T 1z6g_A           21 NNIYPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSC-------------------------------------------   57 (218)
T ss_dssp             -CCCCEEEECSTTSSHHHHHHHHHHHSTTTEEECCCE-------------------------------------------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCCCcEEEeecc-------------------------------------------
Confidence            4578999999999999999999998776333333333                                           


Q ss_pred             HHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHH
Q psy12793        266 TACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQR  340 (352)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  340 (352)
                                                   |+|.++..+.+|..|.|.+.+.|..++..+.|+|++....     ....++
T Consensus        58 -----------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~  108 (218)
T 1z6g_A           58 -----------------------------TTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYD  108 (218)
T ss_dssp             -----------------------------ECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHH
T ss_pred             -----------------------------cCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhcccccCCCcHHHHH
Confidence                                         7888888889999999999999999999999999875432     123456


Q ss_pred             HHHHcCccc
Q psy12793        341 HIVSCRKLV  349 (352)
Q Consensus       341 ~~~~~~~~~  349 (352)
                      .++..++++
T Consensus       109 ~~l~~~~~~  117 (218)
T 1z6g_A          109 KAKEQNKIC  117 (218)
T ss_dssp             HHHHTTCEE
T ss_pred             HHHhCCCcE
Confidence            777766654

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.52  E-value=3.2e-08  Score=94.78  Aligned_cols=49  Identities=20%  Similarity=0.369  Sum_probs=37.0

Q ss_pred             ccccceeEEEeecCCcchhhhhccCC---CCCccccCChhHHHHHHHHhhhc
Q psy12793        224 ITVCSVMFQIISKDDHNWWQARKDNV---AGSAGLIPSPELQEWRTACSTID  272 (352)
Q Consensus       224 ~~~~~~~~~vl~k~~~~w~~~~~~~~---~~~~g~~p~~~~~~~r~~~~~~~  272 (352)
                      +|.+|||+||+++.|++||||++.+.   .+..|||||+.++|+|.....-.
T Consensus        28 ~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~~e~~~~~~~~~   79 (292)
T 3tvt_A           28 PFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRRWERKMRARDRS   79 (292)
T ss_dssp             CBCTTCEEEEEECCSSSEEEECCCCC--------EEECHHHHHHHHHC----
T ss_pred             CcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChHHHHHHHHHhhcc
Confidence            79999999999999999999999754   56699999999999997655433

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=98.50  E-value=1.1e-07  Score=70.01  Aligned_cols=40  Identities=23%  Similarity=0.646  Sum_probs=35.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEE
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK  112 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~  112 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+++.+++||.++.
T Consensus        22 ~~~~alydy~a~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A           22 ELVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             CEEEECSCBCCSSTT-------BCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             eEEEEeeeECCCCCC-------ccCCCCCCEEEEEEecCCCEEEEEe
Confidence            468999999998765       6999999999999999999999874

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.49  E-value=7.9e-08  Score=96.15  Aligned_cols=54  Identities=22%  Similarity=0.626  Sum_probs=48.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||++.|++..+++||.++.   +|+.|+||++|++.
T Consensus        31 ~~~~al~~~~~~~~~-------eL~~~~gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   84 (466)
T 2pz1_A           31 VCAEALWDHVTMDDQ-------ELGFKAGDVIEVMDATNREWWWGRV---ADGEGWFPASFVRL   84 (466)
T ss_dssp             EEEEESSCBCCCCTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             cEEEEccccCCCCCC-------cCCCCCCCEEEEEEecCCCEEEEEE---CCcEEEEehhHeee
Confidence            578999999998765       6999999999999999999999985   47899999999864

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=98.47  E-value=8.5e-08  Score=71.06  Aligned_cols=40  Identities=20%  Similarity=0.707  Sum_probs=35.9

Q ss_pred             cccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         87 AGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        87 ~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+|+|++||++.|+...+++||.++.   +++.|+||++|++.
T Consensus         4 ~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   43 (63)
T 1tuc_A            4 REVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAYVKK   43 (63)
T ss_dssp             CCCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             cccCCCCCCEEEEEEecCCCEEEEEE---CCcEEEEeHHHEEE
Confidence            37999999999999999999999974   57999999999864

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=98.44  E-value=6.3e-08  Score=92.59  Aligned_cols=55  Identities=18%  Similarity=0.298  Sum_probs=0.0

Q ss_pred             eeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      ++|+|||.+..++     +.+|+|++||++.|+.+.+++||.++.   +|+.|+||++|++..
T Consensus       250 a~alyd~~~~~~~-----~~ELs~~~Gd~i~v~~~~~~~ww~g~~---~g~~G~fP~~yv~~~  304 (308)
T 3qwy_A          250 AKVTFDRVPNAYD-----PTQLRVKKGQTVLVTQKMSNGMYKAEL---DGQIGSVPHTYLRFT  304 (308)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             cccccccccccCC-----cccceeCCCCEEEEEEEcCCCcEEEEE---CCeeEEechHHeEEe
Confidence            3566677543321     137999999999999998889997663   688999999999753

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.39  E-value=2.6e-07  Score=91.36  Aligned_cols=55  Identities=29%  Similarity=0.674  Sum_probs=47.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||++.|++.+ ++||.++.. .+|+.|+||++|++.
T Consensus         9 ~~~~al~~~~~~~~~-------el~~~~gd~~~v~~~~-~~W~~~~~~-~~g~~G~~P~~yv~~   63 (454)
T 1qcf_A            9 IIVVALYDYEAIHHE-------DLSFQKGDQMVVLEES-GEWWKARSL-ATRKEGYIPSNYVAR   63 (454)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEECC-TTEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             eEEEECcccCCcCCC-------cCcccCCCEEEEEecC-CCCeEEEEC-CCCceEEecchhccc
Confidence            468999999998865       6999999999999984 789999953 268999999999964

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.38  E-value=2.4e-07  Score=92.98  Aligned_cols=54  Identities=17%  Similarity=0.449  Sum_probs=46.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||++.|++.. +.+||.++.   .++.|+||++|++.
T Consensus        44 ~~~~alyd~~~~~~~-------els~~~gd~~~v~~~~~~~~w~~~~~---~~~~G~~P~~yv~~   98 (495)
T 1opk_A           44 NLFVALYDFVASGDN-------TLSITKGEKLRVLGYNHNGEWCEAQT---KNGQGWVPSNYITP   98 (495)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEEECTTSSEEEEEC---SSCEEEEEGGGEEE
T ss_pred             cEEEEeCCcCCCCCC-------CCCccCCCEEEEeecCCCCCceeeee---cCCcceeccccccc
Confidence            368999999998865       6999999999999976 789999984   46789999999964

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.35  E-value=2.5e-07  Score=95.30  Aligned_cols=56  Identities=23%  Similarity=0.331  Sum_probs=49.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+++++       +|+|++||++.|++..+++||.++.. .+|+.|++|++|+++
T Consensus       443 ~~~~aly~y~a~~~d-------ELs~~~GD~i~v~~~~~~gW~~G~~~-~~g~~G~fPsnyV~~  498 (526)
T 2de0_X          443 HNQIAIYAHQPRTAD-------EIPMEPGDIIGVAGNHWDGYSKGVNR-KLGRTGLYPSYKVRE  498 (526)
T ss_dssp             CEEEECSCBCCSSTT-------BCCBCTTCEEEEEEECSSSEEEEEET-TTTEEEEEEGGGEEE
T ss_pred             cceEEeecCCCCCCC-------cCCcCCCCEEEEccccCCCeeEEEeC-CCCCEEEECchheeE
Confidence            457999999998876       69999999999999999999999853 268999999999964

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.35  E-value=2.6e-07  Score=75.09  Aligned_cols=52  Identities=23%  Similarity=0.443  Sum_probs=42.8

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC--CCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD--HNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D--~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .++|+++.....        .+|+|++|++|.|+...+  ++||.+|  |..|..|+||.+|++
T Consensus        30 ~a~a~~~~k~g~--------~dLp~~~GE~LeII~~~e~p~g~Wl~R--N~~G~~GyVp~~~v~   83 (96)
T 2gtj_A           30 LAKACCDVKGGK--------NELSFKQGEQIEIIRITDNPEGKWLGR--TARGSYGYIKTTAVE   83 (96)
T ss_dssp             EEEESSCEECTT--------SCCEECTTCCEEEEECTTCSSSCCEEE--CTTCCBCCCCGGGEE
T ss_pred             EEEEeecCCCCc--------ccCCcCCCCEEEEEEccCCCCCeEEEE--CCCCCCCccchhhEE
Confidence            568888743333        259999999999999876  6699999  678999999999986

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.34  E-value=2.4e-07  Score=76.05  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=37.2

Q ss_pred             ccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         88 GIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        88 ~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +|+|++|++|.|+...+.+||.+|  |..|+.|+||.+|++.
T Consensus        57 DLpfkkGE~LeVI~~~e~~wwLcR--Ns~GkyGyVP~~yl~~   96 (102)
T 1ri9_A           57 DLQVKPGESLEVIQTTDDTKVLCR--NEEGKYGYVLRSYLAD   96 (102)
T ss_dssp             BCCCCTTCBCEEEEESSSSEEEEE--ETTTEEEEEEGGGSCC
T ss_pred             cCCcCCCCEEEEEEeCCCCEEEEE--CCCCCCCceeHHHhcc
Confidence            699999999999999999999999  6689999999999864

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=98.30  E-value=2.1e-07  Score=71.59  Aligned_cols=40  Identities=20%  Similarity=0.707  Sum_probs=36.0

Q ss_pred             cccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         87 AGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        87 ~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+|+|++||+|.|+.+.+++||.++.   +++.|+||++|++.
T Consensus         6 ~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~~   45 (77)
T 2jmc_A            6 REVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAYVKK   45 (77)
T ss_dssp             CCCCCCTTCEEECCCCCCSSCCCEEE---TTEEECCCGGGEEE
T ss_pred             CccCCCCCCEEEEEEecCCCEEEEEE---CCcEEEEEeeEEEE
Confidence            37999999999999999999999984   58999999999864

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=97.63  E-value=8.4e-08  Score=91.67  Aligned_cols=57  Identities=23%  Similarity=0.519  Sum_probs=48.0

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      .+++|+|||.+..++     +.+|+|++||+|.|+++.+++||.++.   +|+.|+||++|++..
T Consensus       238 ~~~~alydy~~~~~~-----~~eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~fP~~yv~~~  294 (303)
T 2lqn_A          238 VFAKAIQKRVPCAYD-----KTALALEVGDIVKVTRMNINGQWEGEV---NGRKGLFPFTHVKIF  294 (303)
Confidence            578999999876532     137999999999999999999999874   578999999999753

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.26  E-value=3.9e-08  Score=98.41  Aligned_cols=94  Identities=18%  Similarity=0.326  Sum_probs=71.3

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHH
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA  267 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~  267 (352)
                      .++|+|+||+||||++|...|+..++..+   ++.              |.+                            
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~i---is~--------------Ds~----------------------------   36 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEV---INS--------------DSM----------------------------   36 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEE---EEC--------------CTT----------------------------
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeE---eec--------------Ccc----------------------------
Confidence            45789999999999999999998866322   111              111                            


Q ss_pred             HhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccChhhHHHHHHcCc
Q psy12793        268 CSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCRK  347 (352)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (352)
                                 -.|+-++.        +|++|+..|.+|..|||++..++...+.++.|+|++     ...+..|.+.|+
T Consensus        37 -----------QvYr~l~i--------~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a-----~~~i~~i~~~g~   92 (409)
T 3eph_A           37 -----------QVYKDIPI--------ITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETEC-----MNAIEDIHRRGK   92 (409)
T ss_dssp             -----------TTBSSCTT--------TTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHH-----HHHHHHHHTTTC
T ss_pred             -----------ceeccccc--------ccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHH-----HHHHHHHHhcCC
Confidence                       01222222        899999999999999999999999999999999988     445667888888


Q ss_pred             ccc
Q psy12793        348 LVV  350 (352)
Q Consensus       348 ~~~  350 (352)
                      ++|
T Consensus        93 ~pi   95 (409)
T 3eph_A           93 IPI   95 (409)
T ss_dssp             EEE
T ss_pred             CEE
Confidence            765

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.19  E-value=6.2e-07  Score=87.69  Aligned_cols=47  Identities=23%  Similarity=0.389  Sum_probs=40.2

Q ss_pred             ccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHH-HHHHHhh
Q psy12793        224 ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQE-WRTACST  270 (352)
Q Consensus       224 ~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~-~r~~~~~  270 (352)
                      +|.+|++++|+++.|.+|||||+.|..|..|||||+.+.| +|.+.++
T Consensus        63 sF~~GDiL~V~~~~d~~WWqar~~~~~g~~GlIPS~~~~E~~~~~~~~  110 (337)
T 4dey_A           63 SFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQ  110 (337)
T ss_dssp             CBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEEecCCCCeEEEEECCCCCCccEecCHHHHHHHHHhhhh
Confidence            7999999999999999999999998888899999998554 4444443

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.17  E-value=2.3e-07  Score=94.10  Aligned_cols=56  Identities=30%  Similarity=0.668  Sum_probs=0.0

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC-CCceEEEEcCCCCceeeecCChhHH
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-HNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D-~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+.++|+|||.+..++       +|+|++||+|.|+...+ .+||.++..  .|+.|+||++|++.
T Consensus       428 ~~~~~alydy~~~~~~-------eLsf~~Gd~i~vl~~~~~~~Ww~g~~~--~g~~G~~P~nyv~~  484 (486)
T 3haj_A          428 EVRVRALYDYEGQEHD-------ELSFKAGDELTKMEDEDEQGWCKGRLD--NGQVGLYPANYVEA  484 (486)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCC-------cCccCCCCEEEEEEecCCCCeeEEEeC--CCCEEEEeHHHcee
Confidence            3578999999998765       69999999999999874 589999842  47899999999975

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.12  E-value=1.1e-07  Score=92.49  Aligned_cols=94  Identities=15%  Similarity=0.270  Sum_probs=69.3

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHH
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA  267 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~  267 (352)
                      .++|||+||+||||++|...|++.++..+   ++.++.      +                                   
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~i---is~Ds~------Q-----------------------------------   38 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEV---ISGDSM------Q-----------------------------------   38 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEE---EECCGG------G-----------------------------------
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccce---eecCcc------c-----------------------------------
Confidence            46789999999999999999998876321   221110      0                                   


Q ss_pred             HhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccChhhHHHHHHcCc
Q psy12793        268 CSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSCRK  347 (352)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (352)
                                  .|+.++.        +|++|++.|.+|..||||+..++...+.++.|++.+     ...+..|.+.|+
T Consensus        39 ------------vYr~~~i--------gTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a-----~~~i~~i~~~gk   93 (322)
T 3exa_A           39 ------------VYRGMDI--------GTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA-----TPLITEIHERGR   93 (322)
T ss_dssp             ------------GBTTCCT--------TTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH-----HHHHHHHHHTTC
T ss_pred             ------------ceeeeee--------cCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH-----HHHHHHHHhCCC
Confidence                        0111111        899999999999999999999988888888888765     345667888888


Q ss_pred             ccc
Q psy12793        348 LVV  350 (352)
Q Consensus       348 ~~~  350 (352)
                      ++|
T Consensus        94 ~pI   96 (322)
T 3exa_A           94 LPF   96 (322)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            765

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.07  E-value=9.9e-08  Score=92.59  Aligned_cols=96  Identities=15%  Similarity=0.231  Sum_probs=69.4

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHH
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR  265 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r  265 (352)
                      .+.++|||+||+||||++|...|++..+..+   +              +-|.+..                        
T Consensus         8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~i---i--------------s~Ds~qv------------------------   46 (316)
T 3foz_A            8 SLPKAIFLMGPTASGKTALAIELRKILPVEL---I--------------SVDSALI------------------------   46 (316)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEE---E--------------ECCTTTT------------------------
T ss_pred             CCCcEEEEECCCccCHHHHHHHHHHhCCCcE---E--------------ecccccc------------------------
Confidence            3457899999999999999999999866321   1              1111111                        


Q ss_pred             HHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeeccChhhHHHHHHc
Q psy12793        266 TACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSILTHPSQRHIVSC  345 (352)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (352)
                                     |+..+.        +||+|++.|.+|..|||++..++...+..+.|.+.+.     ..+++|.+.
T Consensus        47 ---------------Y~~~~i--------gTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~a~-----~~i~~i~~~   98 (316)
T 3foz_A           47 ---------------YKGMDI--------GTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDAL-----AEMADITAA   98 (316)
T ss_dssp             ---------------BTTCCT--------TTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHHH-----HHHHHHHHT
T ss_pred             ---------------cccccc--------cCCCCCHHHHcCCCEEEeccCCccccccHHHHHHHHH-----HHHHHHHhC
Confidence                           111111        8999999999999999999998888777777776653     345677778


Q ss_pred             Ccccc
Q psy12793        346 RKLVV  350 (352)
Q Consensus       346 ~~~~~  350 (352)
                      |+++|
T Consensus        99 g~~pi  103 (316)
T 3foz_A           99 GRIPL  103 (316)
T ss_dssp             TCEEE
T ss_pred             CCcEE
Confidence            87654

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.01  E-value=2.3e-05  Score=69.53  Aligned_cols=75  Identities=28%  Similarity=0.488  Sum_probs=59.1

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHH
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  264 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~  264 (352)
                      ...+.+++|+|||||||+|+.+.|....+..+ +....                                          
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~-~~~~~------------------------------------------   53 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH-FSVSA------------------------------------------   53 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHSTTCE-ECCCE------------------------------------------
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCCceE-Ecccc------------------------------------------
Confidence            35688999999999999999999988776322 22222                                          


Q ss_pred             HHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEee
Q psy12793        265 RTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKS  332 (352)
Q Consensus       265 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (352)
                                                    ++|.++..+.+|..|.|.+...|..+.....|+++...
T Consensus        54 ------------------------------~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~   91 (207)
T 1znw_A           54 ------------------------------TTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEI   91 (207)
T ss_dssp             ------------------------------ESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred             ------------------------------cccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhh
Confidence                                          66777667788999999999999999999999887654

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=97.95  E-value=1.7e-06  Score=85.71  Aligned_cols=58  Identities=14%  Similarity=0.182  Sum_probs=47.3

Q ss_pred             Ccccccccc---ccccceeEEEeec---CCcchhhhhccCCCC---CccccCChhHHHHHHHHhhhc
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISK---DDHNWWQARKDNVAG---SAGLIPSPELQEWRTACSTID  272 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k---~~~~w~~~~~~~~~~---~~g~~p~~~~~~~r~~~~~~~  272 (352)
                      .|.|.....   +|.+|++++|+++   .|.+||+|++.+..+   ..||||++.++|+|.++....
T Consensus       112 l~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e~~~~~~~~~  178 (391)
T 3tsz_A          112 HFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTL  178 (391)
T ss_dssp             CSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHHHHHSSCCC-
T ss_pred             ccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHHHHHHHHhhh
Confidence            466665433   8999999999999   789999999987743   589999999999998876544

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.85  E-value=1.4e-06  Score=85.21  Aligned_cols=51  Identities=16%  Similarity=0.204  Sum_probs=35.0

Q ss_pred             cCCCCCCCCcCCcceEEecHHHH-HHHHHcCcEEEEEeeccChhhHHHHHHcCcccc
Q psy12793        295 TTRSPRSDEENGRAYYFISHDEM-MSDIAANQYLEYGKSILTHPSQRHIVSCRKLVV  350 (352)
Q Consensus       295 t~r~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  350 (352)
                      +|++|+..|.+|..|||++..++ ...+..+.|.++..     ..+..|.+.+++||
T Consensus        83 gTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~a~-----~~i~~i~~~g~~pI  134 (339)
T 3a8t_A           83 TTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSLAG-----KAVSEITGRRKLPV  134 (339)
T ss_dssp             TTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHHHH-----HHHHHHHHTTCEEE
T ss_pred             ecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHHHH-----HHHHHHHhcCCeEE
Confidence            89999999999999999997777 44444555555442     23344555555543

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.82  E-value=6.5e-06  Score=83.68  Aligned_cols=58  Identities=14%  Similarity=0.182  Sum_probs=47.2

Q ss_pred             Ccccccccc---ccccceeEEEeec---CCcchhhhhccCCCC---CccccCChhHHHHHHHHhhhc
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISK---DDHNWWQARKDNVAG---SAGLIPSPELQEWRTACSTID  272 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k---~~~~w~~~~~~~~~~---~~g~~p~~~~~~~r~~~~~~~  272 (352)
                      .|.|.....   +|.||++++|+++   .+.+||||++.+..+   ..||||++.++|+|.++++..
T Consensus       104 lfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e~~~~~~~~~  170 (468)
T 3shw_A          104 HFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAEQLASVQYTL  170 (468)
T ss_dssp             CSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHHHHHHHHHC-
T ss_pred             ccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHHHHHHHhhhh
Confidence            355543333   8999999999999   788999999987755   699999999999999887664

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=97.82  E-value=8.6e-07  Score=85.99  Aligned_cols=41  Identities=15%  Similarity=0.332  Sum_probs=34.4

Q ss_pred             Cccccc--ccCceEEEeeccCCCceEEEEcCCCCceeeecCCh
Q psy12793         86 QAGIAF--QIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE  126 (352)
Q Consensus        86 e~~LsF--~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~  126 (352)
                      +.+|.|  ..||++.|++..|++||.++..+..|+.|+||+++
T Consensus       284 e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~  326 (341)
T 2dyb_A          284 DIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKL  326 (341)
T ss_dssp             CEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCE
T ss_pred             cccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceeccee
Confidence            346667  79999999999999999887655678889999983

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.78  E-value=1.5e-05  Score=75.72  Aligned_cols=52  Identities=19%  Similarity=0.392  Sum_probs=43.4

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+.++|+|||.+.          +++|.+||++.+++..+..||.++  +..|..|+|||+|+.
T Consensus       198 ~~~v~al~dy~~~----------e~~~~kge~~~l~~~s~~~wW~v~--~~~G~~g~vPs~~~~  249 (283)
T 3pe0_A          198 RLPLLAVCDYKQV----------EVTVHKGDECQLVGPAQPSHWKVL--SSSGSEAAVPSVCFL  249 (283)
T ss_dssp             CEEEEECSCEECS----------SCEECTTCEEEEEEECSTTEEEEE--CC---EEEEEGGGEE
T ss_pred             CceEEeecCccCC----------cccccCCCEEEEeeCCCCCceEEE--cCCCCEeeccceEEe
Confidence            3679999999774          389999999999999999999999  457889999999985

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=97.76  E-value=1.1e-05  Score=85.05  Aligned_cols=57  Identities=14%  Similarity=0.236  Sum_probs=45.2

Q ss_pred             eeeeeccccCCC--CCCCCcCcCcccccccCceEEEeec-----cCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPL--DDDLIPCAQAGIAFQIGDILQIISK-----DDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~--~d~~iPc~e~~LsF~kGDIL~Vl~~-----~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .|+.|++||...  ++.      ..|+|++||+|.+++.     .+++||.++.. .+|+.|++|.+|+.-
T Consensus       574 ~~~~Al~d~~~~~~~~~------~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~-~~g~~G~fP~~~V~~  637 (655)
T 3pvl_A          574 KYVVALQDNPNPAGEES------GFLSFAKGDLIILDHDTGEQVMNSGWANGINE-RTKQRGDFPTDCVYV  637 (655)
T ss_dssp             CEEEESSCCCC-----C------CBCCCCTTCEEEESSCCHHHHHHSSEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             hhhhHHhhcccCCCCCC------CcccccCCCEEEEccccCcccCCCCeEEEEeC-CCCceEEeEhhhEEE
Confidence            678999999832  221      3799999999999988     57899999841 379999999999853

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=97.66  E-value=1.9e-05  Score=76.36  Aligned_cols=58  Identities=12%  Similarity=0.165  Sum_probs=45.8

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcc---------hhhhhccCCC---CCccccCChhHHHHHHHHhhhc
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHN---------WWQARKDNVA---GSAGLIPSPELQEWRTACSTID  272 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~---------w~~~~~~~~~---~~~g~~p~~~~~~~r~~~~~~~  272 (352)
                      .|.|.+...   +|.|||+|+|++..+.+         ||+|++.|..   +..|+||++++.|++...+++.
T Consensus        10 lfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~aeq~~~~~~~~   82 (308)
T 3kfv_A           10 HFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAEQLASLEAAQ   82 (308)
T ss_dssp             CSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHHH
T ss_pred             ecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHHHHHHHHHhh
Confidence            466665444   89999999999999887         9999998763   4789999999999998888776

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=97.58  E-value=6.2e-05  Score=65.93  Aligned_cols=55  Identities=35%  Similarity=0.680  Sum_probs=48.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      .+++|+|+|++..+.       +|.|++||++.|.+..+.+||.+..   .+..|++|++++.+.
T Consensus        15 ~~~~al~d~~~~~~~-------el~~~~Gd~~~v~~~~~~~w~~~~~---~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           15 KVFRALYTFEPRTPD-------ELYIEEGDIIYITDMSDTNWWKGTS---KGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             EEEEESSCCCCSSTT-------BCCCCTTCEEEEEECCSSSEEEEEE---TTEEEEEEHHHHHHH
T ss_pred             eEEEEeCCcCCCCCC-------cccccCCCEEEEeccccchhHhccc---CCcceeechhhcccc
Confidence            367999999998865       6999999999999999999999885   578999999998754

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=97.56  E-value=1.3e-05  Score=66.09  Aligned_cols=45  Identities=20%  Similarity=0.375  Sum_probs=39.8

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||+++..|..|..||||+
T Consensus        10 Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~g~~g~~G~fPs   57 (108)
T 2rqv_A           10 VLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPV   57 (108)
T ss_dssp             ESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCSSSSCCCEEEES
T ss_pred             ECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEECCccCCeeEeec
Confidence            4577776655   89999999999999999999999888888999999

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=97.54  E-value=1.8e-05  Score=60.26  Aligned_cols=45  Identities=13%  Similarity=0.389  Sum_probs=38.6

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++..|..|..|+||+
T Consensus        15 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~G~~P~   62 (76)
T 2ed1_A           15 TIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPV   62 (76)
T ss_dssp             ESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETTCTTCEEEEEG
T ss_pred             ECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECCCCCCEEEEeh
Confidence            3466665544   89999999999999999999998887889999998

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=97.53  E-value=3.3e-05  Score=73.70  Aligned_cols=45  Identities=29%  Similarity=0.512  Sum_probs=40.3

Q ss_pred             ccccceeEEEeecCCcchhhhhccCC---CCCccccCChhHHHHHHHH
Q psy12793        224 ITVCSVMFQIISKDDHNWWQARKDNV---AGSAGLIPSPELQEWRTAC  268 (352)
Q Consensus       224 ~~~~~~~~~vl~k~~~~w~~~~~~~~---~~~~g~~p~~~~~~~r~~~  268 (352)
                      +|.+|++|+|+++.|.+||+|+..|.   .|..|+||+..++|++.+.
T Consensus        24 sf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~~~~~   71 (295)
T 1kjw_A           24 SFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWS   71 (295)
T ss_dssp             CBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHHHHT
T ss_pred             cCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHHHHHHh
Confidence            79999999999999999999999765   3689999999999988654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=97.43  E-value=0.0001  Score=65.84  Aligned_cols=53  Identities=32%  Similarity=0.722  Sum_probs=44.8

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCC---ceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN---WWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~---WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+.++++|.+..+.       +|.|++||++.|+.+.+.+   ||.++.   .++.|++|++|++.
T Consensus       172 ~~~al~d~~~~~~~-------eLa~~~G~~i~vl~~~~~~~~~Ww~~~~---~~~~G~~P~~yv~~  227 (239)
T 1ycs_B          172 VIYALWDYEPQNDD-------ELPMKEGDCMTIIHREDEDEIEWWWARL---NDKEGYVPRNLLGL  227 (239)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCSSCEEEECCCCTTSCSSEEEEEE---TTEEEEEEGGGEEC
T ss_pred             eEEEEeccCCCCCC-------cccccCCCEEEEEEecCCCCCCEEEEEE---CCcEEEeehHHeeE
Confidence            35788999988754       6999999999999987766   999984   57899999999864

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=97.34  E-value=4.9e-05  Score=56.35  Aligned_cols=43  Identities=19%  Similarity=0.512  Sum_probs=34.7

Q ss_pred             CCcccccccc----ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF----ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~----~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...    +|.+|++|.|+.+.|.+||.++.  .+|..|+||+
T Consensus         8 Alydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~--~~G~~G~fP~   54 (60)
T 2lx7_A            8 TLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEK--EDGLRGWFPA   54 (60)
T ss_dssp             ESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEEC--TTSCEEEECG
T ss_pred             ECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEe--CCCCEEEEcH
Confidence            3577765432    89999999999999999998864  2467899998

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.32  E-value=5.8e-06  Score=80.32  Aligned_cols=27  Identities=19%  Similarity=0.480  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +.++|+|+||+||||+|+...|++...
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            346899999999999999999998765

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=97.29  E-value=6.9e-05  Score=55.64  Aligned_cols=43  Identities=23%  Similarity=0.535  Sum_probs=35.0

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++..  +|..|+||+.
T Consensus         9 lydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~   54 (65)
T 1b07_A            9 LFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS--EGKRGMIPVP   54 (65)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT--TSCEEEEEGG
T ss_pred             CCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEEC--CCCEEEEChH
Confidence            466665544   899999999999999999998732  4788999983

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=97.26  E-value=7.8e-05  Score=53.37  Aligned_cols=43  Identities=23%  Similarity=0.535  Sum_probs=34.9

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++..  +|..|+||+.
T Consensus         7 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~   52 (57)
T 1cka_A            7 LFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS--EGKRGMIPVP   52 (57)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT--TSCEEEEEGG
T ss_pred             CCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeC--CCCEEEEeHH
Confidence            466665544   899999999999999999998743  3788999984

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=97.24  E-value=7.2e-05  Score=53.81  Aligned_cols=42  Identities=24%  Similarity=0.595  Sum_probs=34.7

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus         7 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   51 (58)
T 2bz8_A            7 EFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQI---NGRRGLFPDN   51 (58)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEE---TTEEEEEEGG
T ss_pred             CcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEE---CCeEEEEehH
Confidence            466665543   89999999999999999998876   5678999983

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=97.23  E-value=8.3e-05  Score=55.06  Aligned_cols=44  Identities=16%  Similarity=0.359  Sum_probs=36.1

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++..+ .|..|+||+.
T Consensus        12 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~~   58 (67)
T 2o9s_A           12 KFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPG-TSRQGIFPIT   58 (67)
T ss_dssp             CSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTT-SSCEEEEEGG
T ss_pred             CccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECC-CCCEEEEChH
Confidence            466665544   8999999999999999999887765 5788999983

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=97.22  E-value=9.7e-05  Score=61.58  Aligned_cols=45  Identities=22%  Similarity=0.352  Sum_probs=38.9

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++..+..|..|+||+
T Consensus         8 Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~~~g~~G~~P~   55 (120)
T 2kym_A            8 TLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPV   55 (120)
T ss_dssp             ECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESSSCSCCCCEEG
T ss_pred             EcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECCCCCCEEEEch
Confidence            3566766554   89999999999999999999988778899999998

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=97.21  E-value=0.00011  Score=53.50  Aligned_cols=43  Identities=19%  Similarity=0.397  Sum_probs=35.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus        10 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   55 (62)
T 1k4u_S           10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES---KGKVGIFPKV   55 (62)
T ss_dssp             CCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEEC---SSCEEEECGG
T ss_pred             ECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEE---CCcEEEEeHH
Confidence            4566666544   89999999999999999999885   5678999983

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=97.20  E-value=8.7e-05  Score=55.64  Aligned_cols=44  Identities=18%  Similarity=0.379  Sum_probs=35.4

Q ss_pred             CCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        213 PDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       213 p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      ..+|.|.+...   +|.+|++|.|+.+.+..||.++..|..|  |+||+
T Consensus        10 ~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~g--G~~P~   56 (71)
T 1hsq_A           10 KALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQ--LWFPS   56 (71)
T ss_dssp             CCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCSSSCS--CCEET
T ss_pred             EECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEECCeEE--eEECh
Confidence            45677776654   8999999999999999999998765443  59998

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=97.19  E-value=8.2e-05  Score=55.33  Aligned_cols=45  Identities=16%  Similarity=0.322  Sum_probs=35.8

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCC--CccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAG--SAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~--~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++..|..+  ..|+||+.
T Consensus        13 lydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~   62 (68)
T 1tg0_A           13 QFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKS   62 (68)
T ss_dssp             SSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGG
T ss_pred             CeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchH
Confidence            466665544   8999999999999999999988775322  78999983

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=97.19  E-value=8.8e-05  Score=53.17  Aligned_cols=42  Identities=24%  Similarity=0.545  Sum_probs=34.5

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus         8 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   52 (58)
T 1sem_A            8 LFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL---NNRRGIFPSN   52 (58)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEE---TTEEEEEEGG
T ss_pred             CcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEE---CCcEEEechH
Confidence            455665543   89999999999999999999887   4678999983

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=97.18  E-value=8.9e-05  Score=55.18  Aligned_cols=42  Identities=19%  Similarity=0.372  Sum_probs=35.1

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++.   +|..|+||+
T Consensus         6 Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~fP~   50 (65)
T 2fei_A            6 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL---NNKLGLFPS   50 (65)
T ss_dssp             CSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEES---SSCEEEEET
T ss_pred             ECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEE---CCcEEEecH
Confidence            4566766544   89999999999999999999875   577899998

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=97.18  E-value=0.00011  Score=56.28  Aligned_cols=44  Identities=20%  Similarity=0.413  Sum_probs=36.7

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhcc--CCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKD--NVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~--~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++..  |.+|..|+||+
T Consensus        13 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~   61 (80)
T 1ue9_A           13 TSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPA   61 (80)
T ss_dssp             CSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEET
T ss_pred             CcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEch
Confidence            466665443   899999999999999999999887  55678999998

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=97.17  E-value=0.00012  Score=55.75  Aligned_cols=46  Identities=20%  Similarity=0.541  Sum_probs=37.5

Q ss_pred             CCCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        212 FPDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       212 ~p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      ...+|.|.+...   +|.+|++|.|+.+++.+||.++.  .+|..|+||+.
T Consensus        23 ~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~--~~g~~G~~P~~   71 (77)
T 1awj_A           23 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQD--KNGHEGYAPSS   71 (77)
T ss_dssp             CCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCC--SSSCCCCCBST
T ss_pred             EEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEE--CCCCEEEEehH
Confidence            445677776654   89999999999999999998875  35788999983

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=97.16  E-value=9.5e-05  Score=53.08  Aligned_cols=42  Identities=17%  Similarity=0.456  Sum_probs=34.5

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus         7 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   51 (58)
T 1uti_A            7 LYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL---HNKLGLFPAN   51 (58)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGG
T ss_pred             CccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEE---CCeEEEeeHH
Confidence            456665543   89999999999999999998886   4678999984

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=97.15  E-value=0.00012  Score=54.87  Aligned_cols=44  Identities=16%  Similarity=0.268  Sum_probs=35.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.|.+||.++.. .+|..|+||+
T Consensus        11 Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~-~~g~~G~~P~   57 (65)
T 2lj0_A           11 ALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSR-RTKQFGTFPG   57 (65)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEET-TTCCEEEEET
T ss_pred             EceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEEC-CCCCEEEEeh
Confidence            4566766554   899999999999999999977542 2567899998

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=97.15  E-value=0.00013  Score=53.97  Aligned_cols=42  Identities=33%  Similarity=0.669  Sum_probs=34.7

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++..  +|..|+||+
T Consensus         8 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~   52 (67)
T 1gl5_A            8 MYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDK--YGSEGYIPS   52 (67)
T ss_dssp             CSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECS--SSCEEEEET
T ss_pred             CccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEEC--CCCEEEEEh
Confidence            466666544   899999999999999999998743  477899998

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=97.15  E-value=0.0001  Score=52.84  Aligned_cols=42  Identities=17%  Similarity=0.461  Sum_probs=34.6

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus         8 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   52 (58)
T 2vwf_A            8 LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC---HGQTGMFPRN   52 (58)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGG
T ss_pred             CceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEE---CCcEEEEchH
Confidence            456665543   89999999999999999999887   5778999983

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=97.14  E-value=0.0001  Score=52.79  Aligned_cols=42  Identities=21%  Similarity=0.438  Sum_probs=34.7

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus         9 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~   53 (58)
T 2drm_A            9 LYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL---NGKRGWVPAN   53 (58)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE---TTEEEEEEGG
T ss_pred             CccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE---CCcEEEEeHH
Confidence            466665544   89999999999999999999877   5778999984

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=97.14  E-value=9.5e-05  Score=53.37  Aligned_cols=42  Identities=17%  Similarity=0.480  Sum_probs=34.4

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus        10 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   54 (59)
T 2g6f_X           10 KFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH---NGRTGWFPSN   54 (59)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEE---TTEEEEEEGG
T ss_pred             CceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE---CCcEEEEeHH
Confidence            466665544   89999999999999999999876   5678999983

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=97.12  E-value=9.9e-05  Score=53.44  Aligned_cols=42  Identities=31%  Similarity=0.640  Sum_probs=34.6

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus        11 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   55 (60)
T 2xmf_A           11 LYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRL---RGKQGLFPNN   55 (60)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEE---TTEEEEEEGG
T ss_pred             CccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE---CCEEEEEcHH
Confidence            466665544   89999999999999999999887   4678999983

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=97.12  E-value=0.00012  Score=54.32  Aligned_cols=41  Identities=20%  Similarity=0.415  Sum_probs=34.2

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++.   +|..|+||+
T Consensus         7 lydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~fP~   50 (65)
T 2nwm_A            7 KFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEH---HGRLGIFPA   50 (65)
T ss_dssp             CSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEE---TTEEEEECG
T ss_pred             eeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEE---CCcEEEEeh
Confidence            466665544   89999999999999999998874   567899998

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=97.11  E-value=7.1e-05  Score=55.64  Aligned_cols=50  Identities=18%  Similarity=0.415  Sum_probs=38.5

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  266 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~  266 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++.  .+|..|+||+.-.++...
T Consensus        12 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~~~~   64 (69)
T 4esr_A           12 LYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSI--GKGQEGYFPANHVASETL   64 (69)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEE--ETTEEEEEEGGGEEEHHH
T ss_pred             CccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEe--CCCCEEEEchHHeEECcc
Confidence            466665544   89999999999999999999865  357789999865554433

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=97.11  E-value=0.00012  Score=52.73  Aligned_cols=42  Identities=29%  Similarity=0.536  Sum_probs=34.7

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus         9 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   53 (58)
T 1zlm_A            9 LYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS---KGRTGLIPSN   53 (58)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGG
T ss_pred             CccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEE---CCCEEEEehH
Confidence            466665544   89999999999999999999876   5778999984

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=97.09  E-value=0.00011  Score=52.83  Aligned_cols=42  Identities=19%  Similarity=0.334  Sum_probs=34.5

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus         8 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   52 (58)
T 1zx6_A            8 LYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSC---NGRTGIFPAN   52 (58)
T ss_dssp             CSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGG
T ss_pred             CceECCCCCCCccCCCCCEEEEEEecCCCEEEEEE---CCcEEEeeHH
Confidence            456665544   89999999999999999999886   5778999983

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=97.08  E-value=0.0001  Score=53.49  Aligned_cols=43  Identities=21%  Similarity=0.380  Sum_probs=33.1

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++..|..|  |+||+.
T Consensus         9 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~g--G~~P~~   54 (61)
T 1y0m_A            9 LFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQ--LWFPSN   54 (61)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTEEE--EEEEGG
T ss_pred             CcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEECCeEE--EEEChH
Confidence            466665544   8999999999999999999997754322  499973

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.07  E-value=0.00019  Score=54.27  Aligned_cols=46  Identities=24%  Similarity=0.492  Sum_probs=36.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCc------cccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSA------GLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~------g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++....+|..      |+||+.
T Consensus        12 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~   66 (77)
T 2d8j_A           12 ALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSN   66 (77)
T ss_dssp             ESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCCSSCCCCSEEEEETT
T ss_pred             EccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCCcCcccCCceEECHH
Confidence            4566766544   899999999999999999999877333455      999983

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=97.07  E-value=0.00024  Score=53.36  Aligned_cols=43  Identities=23%  Similarity=0.509  Sum_probs=34.1

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.++ .+||.++..  +|..|+||+.
T Consensus         9 Alydy~a~~~~ELsf~~Gd~i~vl~~~-~~Ww~~~~~--~g~~G~~Psn   54 (67)
T 2b86_A            9 AKWDYTAQQDQELDIKKNERLWLLDDS-KTWWRVRNA--ANRTGYVPSN   54 (67)
T ss_dssp             ESSCBCCSSTTSCCBCTTCEEEEEECS-SSSCEEECT--TSCEEECCCC
T ss_pred             EeeeECCCCCCccccCCCCEEEEEecC-CCeEEEEeC--CCCEEEeChH
Confidence            3566766544   89999999999995 699988743  5788999993

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.07  E-value=0.00021  Score=75.75  Aligned_cols=45  Identities=29%  Similarity=0.512  Sum_probs=40.0

Q ss_pred             ccccceeEEEeecCCcchhhhhccCC---CCCccccCChhHHHHHHHH
Q psy12793        224 ITVCSVMFQIISKDDHNWWQARKDNV---AGSAGLIPSPELQEWRTAC  268 (352)
Q Consensus       224 ~~~~~~~~~vl~k~~~~w~~~~~~~~---~~~~g~~p~~~~~~~r~~~  268 (352)
                      +|.+|++++|+++.|.+||+|++.+.   .+..||||++.++|++...
T Consensus       450 sF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~~~~~  497 (721)
T 2xkx_A          450 SFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWS  497 (721)
T ss_pred             cccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHHHHHhh
Confidence            79999999999999999999999765   4678999999999988543

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=97.06  E-value=0.00017  Score=51.84  Aligned_cols=44  Identities=30%  Similarity=0.489  Sum_probs=35.0

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.. .+|..|+||+.
T Consensus         6 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~   52 (58)
T 1jo8_A            6 EYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELE-KDGSKGLFPSN   52 (58)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET-TTCCEEEEEGG
T ss_pred             CceECCCCCCCcccCCCCEEEEEEecCCCcEEEEEC-CCCCEEEechH
Confidence            466665543   899999999999999999988654 34788999983

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=97.06  E-value=9.6e-05  Score=53.62  Aligned_cols=42  Identities=21%  Similarity=0.533  Sum_probs=34.6

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   55 (60)
T 2gnc_A           11 AKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRH---NGIDGLVPH   55 (60)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEE---TTEEEEEEG
T ss_pred             ECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEE---CCeEEEEeH
Confidence            3466665544   89999999999999999998887   467899997

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=97.05  E-value=0.00013  Score=54.73  Aligned_cols=42  Identities=17%  Similarity=0.346  Sum_probs=34.8

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++.   +|..|+||+.
T Consensus         9 lydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   53 (68)
T 2ew3_A            9 LYDFEPENQGELGFKEGDIITLTNQIDENWYEGMI---HGESGFFPIN   53 (68)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEE---TTEEEEEEGG
T ss_pred             eeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEE---CCcEEEeeHH
Confidence            466665544   89999999999999999999876   5778999983

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=97.05  E-value=0.0002  Score=52.94  Aligned_cols=44  Identities=27%  Similarity=0.507  Sum_probs=35.1

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++..  +|..|+||+.
T Consensus        13 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--~g~~G~~P~~   59 (67)
T 1aww_A           13 ALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK--NGQEGYIPSN   59 (67)
T ss_dssp             BSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCT--TSCBCCEETT
T ss_pred             ECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEEC--CCCEEEEchH
Confidence            3466665544   899999999999999999988742  5778999983

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=97.04  E-value=9.6e-05  Score=55.32  Aligned_cols=46  Identities=24%  Similarity=0.507  Sum_probs=36.4

Q ss_pred             CCcccccccc---ccccceeEEEee-cCCcchhhhhccCCCCCccccCChhH
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIIS-KDDHNWWQARKDNVAGSAGLIPSPEL  261 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~-k~~~~w~~~~~~~~~~~~g~~p~~~~  261 (352)
                      .+|.|.+...   +|.+|++|.|+. +.+.+||.++..  +|..|+||+.-+
T Consensus        16 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~--~g~~G~~P~~yv   65 (71)
T 1csk_A           16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK--VGREGIIPANYV   65 (71)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECT--TSCEEEEETTSE
T ss_pred             EceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeC--CCCEEEEehHHe
Confidence            3566766544   899999999999 899999998832  678899998543

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.04  E-value=0.00018  Score=54.72  Aligned_cols=43  Identities=16%  Similarity=0.309  Sum_probs=34.5

Q ss_pred             CCccccccc-------c---ccccceeEEEee-cCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQ-------F---ITVCSVMFQIIS-KDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~-------~---~~~~~~~~~vl~-k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+..       .   +|.+|++|.|+. +++..||+++.   +|..|+||+.
T Consensus        12 Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~---~g~~G~fP~~   65 (75)
T 2ege_A           12 AALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGEL---GGHRGLVPAH   65 (75)
T ss_dssp             ESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEES---SSCEEEEETT
T ss_pred             ECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEE---CCcEEEEChH
Confidence            356666555       3   899999999998 58999999876   5778999983

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.04  E-value=0.00018  Score=53.39  Aligned_cols=42  Identities=29%  Similarity=0.541  Sum_probs=34.7

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   56 (68)
T 1x2k_A           12 ALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS---KGRTGLIPS   56 (68)
T ss_dssp             ESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEES---SSCEEEEET
T ss_pred             ECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEE---CCcEEEEeh
Confidence            3466665544   89999999999999999999886   567899998

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=97.03  E-value=0.00015  Score=53.06  Aligned_cols=42  Identities=17%  Similarity=0.480  Sum_probs=34.4

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus        12 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   56 (64)
T 2ak5_A           12 KFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH---NGRTGWFPSN   56 (64)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEE---TTEEEEEEGG
T ss_pred             ccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEE---CCCEEEEehH
Confidence            466665543   89999999999999999999876   5678999983

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=97.02  E-value=0.00012  Score=54.52  Aligned_cols=44  Identities=16%  Similarity=0.356  Sum_probs=36.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++..+ .|..|+||+
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~-~g~~G~~P~   58 (70)
T 2ecz_A           12 AKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPG-TSRQGIFPI   58 (70)
T ss_dssp             ESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETT-TTEEEEECT
T ss_pred             ECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECC-CCCEEEEch
Confidence            3466665544   8999999999999999999888765 467899998

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=97.02  E-value=0.00015  Score=52.84  Aligned_cols=42  Identities=24%  Similarity=0.563  Sum_probs=34.5

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++..   |..|+||+.
T Consensus        11 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~---g~~G~~P~~   55 (62)
T 1uj0_A           11 LYDFEAVEDNELTFKHGELITVLDDSDANWWQGENH---RGTGLFPSN   55 (62)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET---TEEEEEEGG
T ss_pred             CccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEEC---CCEEEechh
Confidence            466665544   899999999999999999998775   458999983

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=97.01  E-value=0.00015  Score=52.61  Aligned_cols=42  Identities=12%  Similarity=0.330  Sum_probs=34.5

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus        10 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~   54 (60)
T 1w70_A           10 LFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV---RGATGIFPLS   54 (60)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGG
T ss_pred             CccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEE---CCCEEEechH
Confidence            466665544   89999999999999999998885   4678999983

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=97.01  E-value=0.00023  Score=55.55  Aligned_cols=46  Identities=7%  Similarity=0.211  Sum_probs=36.5

Q ss_pred             CCCccc-ccccc---ccccceeEEEeecCCcchhhhhccCC---CCCccccCC
Q psy12793        213 PDKYAY-PVPQF---ITVCSVMFQIISKDDHNWWQARKDNV---AGSAGLIPS  258 (352)
Q Consensus       213 p~~F~~-~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~---~~~~g~~p~  258 (352)
                      ..+|.| .+...   +|.+|++|.|+.+.+.+||.++....   +|..|+||+
T Consensus        22 ~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPs   74 (83)
T 2ke9_A           22 RALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPP   74 (83)
T ss_dssp             EESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECG
T ss_pred             EEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEech
Confidence            345777 44433   89999999999999999999986532   578999998

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.00  E-value=0.00021  Score=53.15  Aligned_cols=42  Identities=12%  Similarity=0.456  Sum_probs=34.4

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   56 (68)
T 2dl4_A           12 ALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKI---QDRIGFFPA   56 (68)
T ss_dssp             ESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEEC---SSCEEEEET
T ss_pred             EeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEE---CCcEEEEeh
Confidence            3466665543   89999999999999999999885   467899998

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=96.97  E-value=0.00018  Score=50.89  Aligned_cols=41  Identities=27%  Similarity=0.403  Sum_probs=33.5

Q ss_pred             Ccccccccc---ccccceeEEEeecCC-cchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDD-HNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~-~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+ ..||.++.   +|..|+||+
T Consensus         6 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~---~g~~G~~P~   50 (54)
T 2a28_A            6 IYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGEC---DGLKGLFPT   50 (54)
T ss_dssp             CSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEE---TTEEEEEEG
T ss_pred             CccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEE---CCeEEEeeH
Confidence            466665544   899999999999996 79998877   567899997

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=96.96  E-value=0.00019  Score=54.01  Aligned_cols=41  Identities=24%  Similarity=0.582  Sum_probs=34.2

Q ss_pred             Ccccccccc---ccccceeEEEeecC--CcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKD--DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~--~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.++  +..||.++.   +|..|+||+
T Consensus         8 lydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~---~g~~G~~P~   53 (69)
T 2ydl_A            8 IFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL---NGRRGVFPD   53 (69)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEE---TTEEEEEEG
T ss_pred             cccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEE---CCcEEEecH
Confidence            566666544   89999999999997  899998876   567899998

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=96.96  E-value=0.00019  Score=51.82  Aligned_cols=42  Identities=21%  Similarity=0.548  Sum_probs=34.0

Q ss_pred             Ccccccccc---ccccceeEEEeecC--CcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKD--DHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~--~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.  +..||.++.   +|..|+||+.
T Consensus         9 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~~   55 (60)
T 1oot_A            9 LYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV---NGREGIFPAN   55 (60)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEE---TTEEEEEEGG
T ss_pred             CccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEE---CCEEEEEeHH
Confidence            466665543   89999999999997  789999887   5678999983

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=96.96  E-value=0.00018  Score=52.64  Aligned_cols=42  Identities=24%  Similarity=0.394  Sum_probs=34.2

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus        15 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   59 (65)
T 3ulr_B           15 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC---KGRYGLFPAN   59 (65)
T ss_dssp             CSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGG
T ss_pred             EeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEE---CCcEEEEehH
Confidence            466665544   89999999999999999998875   4677999973

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.95  E-value=0.00026  Score=54.95  Aligned_cols=43  Identities=19%  Similarity=0.515  Sum_probs=35.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||.+.+.+||.++.  .+|..|+||+
T Consensus        24 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~--~~g~~G~~P~   69 (85)
T 2yuq_A           24 ALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQD--RNGHEGYVPS   69 (85)
T ss_dssp             ESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEEC--SSSCEEEEET
T ss_pred             ECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEE--CCCCEEEEeh
Confidence            3566666544   89999999999999999998864  3578899998

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=96.95  E-value=0.00022  Score=54.30  Aligned_cols=42  Identities=21%  Similarity=0.567  Sum_probs=34.4

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++..   |..|+||+
T Consensus        22 Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~---g~~G~fP~   66 (72)
T 2l0a_A           22 AIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH---QGIGLFPS   66 (72)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECS---SCEEECTT
T ss_pred             ECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEEC---CCEEEech
Confidence            3566665544   899999999999999999988765   55899998

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.95  E-value=0.00025  Score=52.52  Aligned_cols=42  Identities=19%  Similarity=0.457  Sum_probs=34.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++..   |..|+||+
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~---g~~G~~P~   56 (68)
T 1x2p_A           12 AIADYAATDETQLSFLRGEKILILRQTTADWWWGERA---GCCGYIPA   56 (68)
T ss_dssp             ESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECT---TCCEEEES
T ss_pred             ECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEEC---CeEEEEeh
Confidence            3466665544   899999999999999999998754   67899998

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=96.94  E-value=0.00019  Score=52.40  Aligned_cols=42  Identities=17%  Similarity=0.447  Sum_probs=34.3

Q ss_pred             Ccccccccc---ccccceeEEEeec-CCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISK-DDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k-~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+ .+..||.++.   +|..|+||+.
T Consensus         7 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~---~g~~G~~P~~   52 (62)
T 2j6f_A            7 EYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGEL---NGRRGMFPDN   52 (62)
T ss_dssp             CSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEE---TTEEEEEEGG
T ss_pred             CccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEE---CCcEEEechH
Confidence            466665544   8999999999999 8999998875   5678999983

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=96.94  E-value=0.0002  Score=51.73  Aligned_cols=42  Identities=17%  Similarity=0.555  Sum_probs=34.1

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .|.|.+...   +|.+|++|.|+.+.+..||.++.   .|..|+||+.
T Consensus        12 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~---~g~~G~~P~~   56 (62)
T 3ngp_A           12 LYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEV---NGRQGFVPAA   56 (62)
T ss_dssp             CSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGG
T ss_pred             CcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEE---CCEEEEEEHH
Confidence            456665543   89999999999999999999875   4678999983

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.94  E-value=0.00053  Score=55.15  Aligned_cols=53  Identities=21%  Similarity=0.350  Sum_probs=38.0

Q ss_pred             ccccCCCCCCCCcCcCcccccccCceEEEeeccCC----CceEEEEcCCCCceeeecCChhHH
Q psy12793         71 QFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH----NWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        71 lfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~----~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ||+|.+.-.   .+++.+|++++||++.|+.+.|+    .||..+.   .+..|++|++|++.
T Consensus        19 LY~~t~~~~---~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdt---gg~~GyvPs~yLe~   75 (92)
T 1ug1_A           19 LFQAERNFN---AAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDN---GVTKGFVYSSFLKP   75 (92)
T ss_dssp             EEEESSCCC---CCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEEC---SSSEEEEEGGGEEE
T ss_pred             eEEeccCcC---CCCceeeeecCCCEEEEEecCCCCCCCcceEEEC---CCcEEeeEhhhceE
Confidence            455544321   23457899999999999999764    3444552   68999999999875

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=96.93  E-value=0.00019  Score=53.27  Aligned_cols=41  Identities=10%  Similarity=0.113  Sum_probs=33.6

Q ss_pred             Ccccccc--cc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVP--QF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~--~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+.  ..   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        12 lydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~fP~   57 (67)
T 2eyx_A           12 IQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGEC---NGKRGHFPF   57 (67)
T ss_dssp             CCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEE---TTEEEEEEG
T ss_pred             eEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEE---CCCEEEEeh
Confidence            4666654  32   89999999999999999998865   467899998

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=96.92  E-value=0.00015  Score=53.02  Aligned_cols=45  Identities=13%  Similarity=0.445  Sum_probs=35.5

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhcc----CC-CCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKD----NV-AGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~----~~-~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++..    |. .|..|+||+.
T Consensus         7 lydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~   59 (65)
T 2oaw_A            7 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAA   59 (65)
T ss_dssp             CSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGG
T ss_pred             cccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchH
Confidence            466665544   899999999999999999988775    22 2778999983

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=96.91  E-value=0.00031  Score=51.99  Aligned_cols=41  Identities=20%  Similarity=0.492  Sum_probs=34.0

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+.+.   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        13 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~   56 (68)
T 2dl3_A           13 KFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEH---HGRVGIFPR   56 (68)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEC---SSCEEEEET
T ss_pred             CccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEE---CCCEEEEch
Confidence            466665544   89999999999999999999884   467899998

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=96.91  E-value=0.00028  Score=52.22  Aligned_cols=44  Identities=23%  Similarity=0.511  Sum_probs=35.4

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.  .+|..|+||+.
T Consensus        15 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~   61 (68)
T 1s1n_A           15 AVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKD--AKGNEGLVPRT   61 (68)
T ss_dssp             ECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEEC--SSSCEEEEEST
T ss_pred             EcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEE--CCCCEEEEehH
Confidence            3466665544   89999999999999999999884  25778999984

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.91  E-value=0.0002  Score=53.84  Aligned_cols=42  Identities=24%  Similarity=0.541  Sum_probs=34.7

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        14 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   58 (72)
T 2dl8_A           14 AKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRH---NGIDGLIPH   58 (72)
T ss_dssp             ESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEE---TTEEEEECS
T ss_pred             ECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEE---CCEEEEEch
Confidence            3466665544   89999999999999999998887   467899998

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=96.90  E-value=0.00028  Score=52.82  Aligned_cols=45  Identities=31%  Similarity=0.568  Sum_probs=35.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.. ..|..|+||+.
T Consensus        20 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~   67 (73)
T 3h0h_A           20 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSL-TTGETGYIPSN   67 (73)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEET-TTCCEEEEEGG
T ss_pred             ECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEEC-CCCCEEEEEHH
Confidence            3466665544   899999999999999999988762 24568999983

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=96.87  E-value=0.00024  Score=52.64  Aligned_cols=41  Identities=20%  Similarity=0.311  Sum_probs=33.8

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        13 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   56 (68)
T 2djq_A           13 LCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEI---NGVSGIFPA   56 (68)
T ss_dssp             CSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEE---TTEEEEEES
T ss_pred             CCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEE---CCcEEEeeh
Confidence            456665543   89999999999999999999885   467899998

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.87  E-value=0.00017  Score=70.54  Aligned_cols=25  Identities=20%  Similarity=0.440  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ++|+|+||+||||+|+...|+...+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            5899999999999999999998764

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=96.87  E-value=0.00023  Score=52.91  Aligned_cols=41  Identities=17%  Similarity=0.416  Sum_probs=33.9

Q ss_pred             Ccccccccc---ccccceeEEEeecC---CcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKD---DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~---~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.   +.+||.++.   +|..|+||+
T Consensus         9 lydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~---~g~~G~~P~   55 (69)
T 1wyx_A            9 LYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSL---HGRQGIVPG   55 (69)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEE---TTEEEEEEG
T ss_pred             CccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEE---CCcEEEech
Confidence            466665544   89999999999998   899999985   466899998

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=96.87  E-value=0.00038  Score=52.71  Aligned_cols=42  Identities=14%  Similarity=0.119  Sum_probs=33.9

Q ss_pred             CCcccccc--cc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVP--QF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~--~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+.  ..   +|.+|++|.|+.+.+..||.++.+   |..|+||+
T Consensus        14 alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~---g~~G~fP~   60 (73)
T 2ebp_A           14 VHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLN---NKVGTFKF   60 (73)
T ss_dssp             ECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECS---SCEEEECS
T ss_pred             EeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEEC---CCEEEEeH
Confidence            35666643  32   899999999999999999988654   66899998

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=96.86  E-value=0.00062  Score=68.82  Aligned_cols=51  Identities=24%  Similarity=0.349  Sum_probs=45.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      +.|+|++||...          ++++.+||++.+++..+..||.++  +..|..|++|+.|+.
T Consensus       284 ~~V~alcdy~~~----------e~~i~kge~~~L~~ns~~~~W~V~--~~~G~~~~vPavcf~  334 (450)
T 3r6n_A          284 IILRALCDYKQD----------QKIVHKGDECILKDNNERSKWYVT--GPGGVDMLVPSVGLI  334 (450)
T ss_dssp             CEEEESSCEEET----------TEEECTTCEEEEEECSSSSEEEEE--CSSSCCEEEEGGGEE
T ss_pred             ceEEEeccccCC----------eeeEecCCEEEEecCCCCCceEEe--cCCCCeeccceeEEe
Confidence            678999999963          489999999999999999999988  557889999999874

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=96.86  E-value=0.00023  Score=51.49  Aligned_cols=42  Identities=21%  Similarity=0.664  Sum_probs=33.7

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+ +.+||.++..  +|..|+||+.
T Consensus         7 l~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~--~g~~G~~P~~   51 (60)
T 1i07_A            7 KYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNA--SGDSGFVPNN   51 (60)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECT--TSCEEEEEGG
T ss_pred             CccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEEC--CCCEEEEEHH
Confidence            466665544   8999999999999 9999988743  3788999983

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.86  E-value=0.00028  Score=55.14  Aligned_cols=42  Identities=21%  Similarity=0.529  Sum_probs=34.7

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++..   |..|+||+
T Consensus        22 Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~---g~~G~~P~   66 (88)
T 1x2q_A           22 ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENH---RGIGLFPS   66 (88)
T ss_dssp             ESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEET---TEEEEECG
T ss_pred             EcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEEC---CcEEEEeh
Confidence            3466665544   899999999999999999998776   45899998

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=96.86  E-value=0.00024  Score=53.59  Aligned_cols=42  Identities=17%  Similarity=0.339  Sum_probs=34.5

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus        19 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~   63 (73)
T 3c0c_A           19 LYDFEPENDGELGFREGDLITLTNQIDENWYEGML---HGQSGFFPLS   63 (73)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEGG
T ss_pred             CccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEE---CCCEEEeChH
Confidence            466665544   89999999999999999999876   5678999983

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.85  E-value=0.00034  Score=52.64  Aligned_cols=42  Identities=26%  Similarity=0.507  Sum_probs=33.9

Q ss_pred             CCcccccccc---ccccceeEEEeec---CCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISK---DDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k---~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+   .+..||.++.   +|..|+||+
T Consensus        13 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~---~g~~G~~P~   60 (73)
T 2dl7_A           13 ALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEF---NGRIGVFPS   60 (73)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEE---TTEEEEECS
T ss_pred             ECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEE---CCCEEEECh
Confidence            4566665544   8999999999999   4889999874   567899998

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.85  E-value=0.0003  Score=53.31  Aligned_cols=43  Identities=14%  Similarity=0.448  Sum_probs=35.3

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus        15 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   60 (76)
T 1ujy_A           15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTL---NGRTGWFPSN   60 (76)
T ss_dssp             CCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEE---TTEEEEECTT
T ss_pred             ECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEE---CCCEEEechH
Confidence            4566665544   89999999999999999999886   4678999983

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=96.84  E-value=0.00028  Score=51.59  Aligned_cols=42  Identities=21%  Similarity=0.556  Sum_probs=33.6

Q ss_pred             CCcccccccc---ccccceeEEEeecC--CcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD--DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~--~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.++  +..||.++.   +|..|+||+
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~---~g~~G~~P~   57 (64)
T 2jte_A           11 TLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGEL---NGKEGVFPD   57 (64)
T ss_dssp             ESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEE---TTEEEEEEG
T ss_pred             ECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEE---CCeEEEEeH
Confidence            3466665544   89999999999996  789998875   567899997

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=96.82  E-value=0.0003  Score=52.29  Aligned_cols=42  Identities=19%  Similarity=0.615  Sum_probs=35.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++..   |..|+||+
T Consensus        13 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~---g~~G~~P~   57 (69)
T 2dil_A           13 ALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERN---GQRGFVPG   57 (69)
T ss_dssp             CCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEET---TEEEEEEG
T ss_pred             ECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEEC---CCEEEEeh
Confidence            4566766544   899999999999999999998874   77899998

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=96.82  E-value=0.00036  Score=55.62  Aligned_cols=42  Identities=17%  Similarity=0.491  Sum_probs=34.9

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        23 Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~---~g~~G~fPs   67 (92)
T 2o2o_A           23 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL---NGKTGMFPS   67 (92)
T ss_dssp             ECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEE---TTEECCBCS
T ss_pred             EccccCCCCCccccccCCCEEEEeEecCCCEEEEEE---CCeEEEeeh
Confidence            3466665544   89999999999999999998886   577899998

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=96.82  E-value=0.0003  Score=53.04  Aligned_cols=43  Identities=12%  Similarity=0.417  Sum_probs=34.5

Q ss_pred             CCcccccccc--ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF--ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~--~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|....+  +|.+|++|.|+.+.+.+||.++.   +|..|+||+.
T Consensus         5 alydy~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   49 (73)
T 2kxd_A            5 PLPPYSAGGREVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAA   49 (73)
T ss_dssp             CCCSSCCCSCCCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGG
T ss_pred             EeeeeCCCCCEeeEcCCCEEEEEEecCCCEEEEEE---CCCEEEEehH
Confidence            4566665322  89999999999999999998864   5678999983

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.80  E-value=0.0004  Score=51.69  Aligned_cols=41  Identities=20%  Similarity=0.401  Sum_probs=33.6

Q ss_pred             Ccccccccc---ccccceeEEEeecC---CcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKD---DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~---~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.   +..||.++.   +|..|+||+
T Consensus        13 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~---~g~~G~~P~   59 (71)
T 2cre_A           13 LYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLL---HGRQGLAPA   59 (71)
T ss_dssp             SSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEES---SSCCEEEET
T ss_pred             CcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEE---CCCEEEEeh
Confidence            466665543   89999999999998   999999884   467899998

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=96.80  E-value=0.00025  Score=50.55  Aligned_cols=42  Identities=21%  Similarity=0.483  Sum_probs=33.6

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   .|..|+||+.
T Consensus         7 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~   51 (58)
T 4e6r_A            7 XFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSY---NGQIGWFPSN   51 (58)
T ss_dssp             CSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEE---TTEEEEEEGG
T ss_pred             CccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEE---CCcEEEEehH
Confidence            456665544   89999999999999999998844   5667999983

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.79  E-value=0.00033  Score=53.83  Aligned_cols=42  Identities=12%  Similarity=0.376  Sum_probs=34.6

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.+   |..|+||+
T Consensus        15 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~---g~~G~~P~   59 (81)
T 2ysq_A           15 AVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQID---DEEGWFPA   59 (81)
T ss_dssp             ESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECS---SCEEEEEG
T ss_pred             EeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEEC---CCEEEech
Confidence            3466665543   899999999999999999998865   67899998

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.78  E-value=0.00062  Score=54.22  Aligned_cols=44  Identities=18%  Similarity=0.360  Sum_probs=34.8

Q ss_pred             CCccccccc------c---ccccceeEEEe-ecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQ------F---ITVCSVMFQII-SKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~------~---~~~~~~~~~vl-~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+..      .   +|.+|++|.|+ .+.+..||+++..  +|..|+||+.
T Consensus        22 Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~--~g~~G~~Psn   75 (96)
T 1wie_A           22 ARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL--DGQRGLVPSN   75 (96)
T ss_dssp             ESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEET--TCCBCBCCTT
T ss_pred             ECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEEC--CCCEEEEchH
Confidence            356666543      2   89999999999 8899999998852  4778999993

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=96.78  E-value=0.00028  Score=52.52  Aligned_cols=43  Identities=14%  Similarity=0.302  Sum_probs=34.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+.
T Consensus        18 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~   63 (72)
T 4glm_A           18 ALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSL---KGRTGIFPYR   63 (72)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEE---TTEEEEEEGG
T ss_pred             ECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEE---CCcEEEEChH
Confidence            3466665543   89999999999999999998885   4678999983

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.78  E-value=0.00032  Score=52.11  Aligned_cols=42  Identities=17%  Similarity=0.335  Sum_probs=34.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   56 (68)
T 2dmo_A           12 VLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMF---NGQKGLVPC   56 (68)
T ss_dssp             ECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEE---TTEEEEECS
T ss_pred             ECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEe---CCCEEEeeh
Confidence            3566665544   89999999999999999997754   567899998

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=96.78  E-value=0.0003  Score=52.97  Aligned_cols=41  Identities=17%  Similarity=0.348  Sum_probs=34.1

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        13 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   56 (73)
T 2dbm_A           13 LYDFEPENEGELGFKEGDIITLTNQIDENWYEGML---HGHSGFFPI   56 (73)
T ss_dssp             SSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEE---TTEEEEEES
T ss_pred             ccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEE---CCCEEEech
Confidence            466665544   89999999999999999999876   567899998

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.77  E-value=0.00038  Score=54.06  Aligned_cols=42  Identities=14%  Similarity=0.282  Sum_probs=34.7

Q ss_pred             CCcccccccc---ccccceeEEEeec--CCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISK--DDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k--~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+  .+..||.++.   +|..|+||+
T Consensus        13 al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~fP~   59 (85)
T 2dlp_A           13 ALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSA---GGRSGLFPA   59 (85)
T ss_dssp             ESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEES---SSCEEEEET
T ss_pred             ECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEE---CCEEEEech
Confidence            4566766544   8999999999998  9999998876   467899998

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=96.77  E-value=0.00048  Score=52.45  Aligned_cols=45  Identities=24%  Similarity=0.657  Sum_probs=34.0

Q ss_pred             CCcccccc-----cc-ccccceeEEEeecC-CcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVP-----QF-ITVCSVMFQIISKD-DHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~-----~~-~~~~~~~~~vl~k~-~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      ++|.+..+     .. +|.+|++|.||.++ +..||.++.. .+|..|+||+.
T Consensus        20 a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~-~~g~~G~fP~n   71 (78)
T 1k1z_A           20 EYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNT-ATNEVGWFPCN   71 (78)
T ss_dssp             CBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEET-TTTEEEEECST
T ss_pred             ECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEEC-CCCCEEEEehH
Confidence            44555553     22 89999999999995 9999988732 24668999984

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=96.77  E-value=0.00035  Score=50.34  Aligned_cols=43  Identities=23%  Similarity=0.455  Sum_probs=33.5

Q ss_pred             Ccccccccc---ccccceeEEEeecCC-cchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDD-HNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~-~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+ ..||.++..  .|..|+||+.
T Consensus         9 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~--~g~~G~~P~~   55 (60)
T 2x3w_D            9 LYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLD--SGQLGLYPAN   55 (60)
T ss_dssp             CSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECS--SCCEEEEEGG
T ss_pred             CcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeC--CCCEEEecHH
Confidence            466665544   899999999999965 489988754  5888999984

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=96.77  E-value=0.00034  Score=52.15  Aligned_cols=43  Identities=23%  Similarity=0.584  Sum_probs=34.5

Q ss_pred             CCcccccccc---ccccceeEEEeec--CCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISK--DDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k--~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+  .+.+||.++.  ..|..|+||+
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~~g~~G~~P~   58 (71)
T 1u5s_A           11 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN--ARGQVGLVPK   58 (71)
T ss_dssp             ESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEE--TTTEEEEEET
T ss_pred             EcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEe--CCCCEEEEeH
Confidence            3466665544   8999999999999  7999998873  2477899998

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.76  E-value=0.00032  Score=52.32  Aligned_cols=44  Identities=23%  Similarity=0.356  Sum_probs=36.0

Q ss_pred             CCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        213 PDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       213 p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      ..+|.|.+...   +|.+|++|.|+.+.+..||.++..   |..|+||+.
T Consensus        12 ~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~---g~~G~~P~~   58 (71)
T 2dnu_A           12 VTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL---GKEGWAPAS   58 (71)
T ss_dssp             ECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEET---TEEEEEEGG
T ss_pred             EECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEEC---CcEEEEEHH
Confidence            34567765544   899999999999999999988877   678999983

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=96.76  E-value=0.00021  Score=52.92  Aligned_cols=42  Identities=17%  Similarity=0.491  Sum_probs=34.6

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   56 (68)
T 1wi7_A           12 VAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL---NGKTGMFPS   56 (68)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECS---TTCCEEEET
T ss_pred             ECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEE---CCcEEEEch
Confidence            3466665544   89999999999999999999875   567899998

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=96.75  E-value=0.00054  Score=51.52  Aligned_cols=42  Identities=21%  Similarity=0.529  Sum_probs=33.6

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+ +.+||.++..  +|..|+||+
T Consensus        12 alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~--~g~~G~~P~   56 (72)
T 2jw4_A           12 AKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNS--MNKTGFVPS   56 (72)
T ss_dssp             CSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECT--TSCEEEECT
T ss_pred             ECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEEC--CCCEEEEEh
Confidence            4567766544   8999999999998 5699988753  578899998

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=96.75  E-value=0.00033  Score=52.47  Aligned_cols=41  Identities=15%  Similarity=0.536  Sum_probs=33.8

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++..   |..|+||+
T Consensus        11 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~---g~~G~~P~   54 (73)
T 3thk_A           11 LYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN---DRQGFVPA   54 (73)
T ss_dssp             CSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET---TEEEEEEG
T ss_pred             CcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEEC---CcEEEEeh
Confidence            466665544   899999999999999999998754   56899998

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=96.75  E-value=0.00035  Score=52.44  Aligned_cols=41  Identities=24%  Similarity=0.582  Sum_probs=33.7

Q ss_pred             Ccccccccc---ccccceeEEEeecC--CcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKD--DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~--~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.++  +..||.++.   +|..|+||+
T Consensus        15 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~---~g~~G~~P~   60 (73)
T 2k9g_A           15 IFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL---NGRRGVFPD   60 (73)
T ss_dssp             CSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEE---TTEEEEEEG
T ss_pred             CccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEE---CCeEEEEch
Confidence            466665544   89999999999996  899999885   567899998

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.75  E-value=0.00039  Score=52.40  Aligned_cols=42  Identities=24%  Similarity=0.582  Sum_probs=33.8

Q ss_pred             CCcccccccc---ccccceeEEEeecC--CcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD--DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~--~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.  +..||.++.   +|..|+||+
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~   58 (73)
T 2dm1_A           12 ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGET---NGRIGWFPS   58 (73)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEE---TTEEEEECS
T ss_pred             ECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEE---CCeEEEeeh
Confidence            3566665544   89999999999998  559999875   567899998

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.75  E-value=0.00033  Score=53.21  Aligned_cols=46  Identities=15%  Similarity=0.274  Sum_probs=36.6

Q ss_pred             CCcccccccc--ccccceeEEEeecCCcchhhhhccCC-CCCccccCCh
Q psy12793        214 DKYAYPVPQF--ITVCSVMFQIISKDDHNWWQARKDNV-AGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~--~~~~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~p~~  259 (352)
                      .+|.|.+..+  +|.+|++|.||.+++..||.++.... +|..|+||+.
T Consensus        15 alydy~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~~g~~G~~P~~   63 (75)
T 2egc_A           15 SIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSN   63 (75)
T ss_dssp             ECSCBCCCSSSCCBCTTCEEEECEECTTSEEEEEECCSSSCEEEEEEGG
T ss_pred             ECCCcCCCCCcCCCCCCCEEEEEEcCCCCeEEEEeCCCCCCcEEEEehH
Confidence            3566666522  89999999999999999999987543 4788999983

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.75  E-value=0.00024  Score=54.03  Aligned_cols=42  Identities=21%  Similarity=0.506  Sum_probs=34.8

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        15 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   59 (76)
T 2epd_A           15 ACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEH---NGMRGLIPH   59 (76)
T ss_dssp             ESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEE---TTEEEEEES
T ss_pred             ECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEE---CCcEEEEeh
Confidence            3566665544   89999999999999999998876   567899998

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=96.74  E-value=0.00042  Score=51.78  Aligned_cols=45  Identities=20%  Similarity=0.468  Sum_probs=34.8

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCc---cccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSA---GLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~---g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.| .+.+.+||.++....+|..   |+||+.
T Consensus        15 alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~~g~~~~~G~~P~~   65 (72)
T 2kgt_A           15 GLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDEAGGAVAQGYVPHN   65 (72)
T ss_dssp             CCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECTTSCEEEEEEECTT
T ss_pred             EcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCCCCCEeCCcEEcHh
Confidence            4566666544   8999999999 9999999999873223556   999984

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=96.74  E-value=0.00031  Score=52.07  Aligned_cols=41  Identities=12%  Similarity=0.148  Sum_probs=33.2

Q ss_pred             Ccccccc--cc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVP--QF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~--~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+.  ..   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus         7 l~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~fP~   52 (67)
T 2bzy_A            7 IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV---NGRKGLFPF   52 (67)
T ss_dssp             CSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEE---TTEEEEEEG
T ss_pred             eeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEe---CCcEEEEeh
Confidence            4666554  32   89999999999999999998755   467899998

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=96.74  E-value=0.00023  Score=51.81  Aligned_cols=43  Identities=19%  Similarity=0.356  Sum_probs=34.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   .|..|+||+.
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~   57 (65)
T 3u23_A           12 VLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL---NNKLGLFPSN   57 (65)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEE---TTEEEEEEGG
T ss_pred             EeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEE---CCCEEEeehH
Confidence            3466665544   89999999999999999998885   4567899983

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.73  E-value=0.00032  Score=54.97  Aligned_cols=41  Identities=22%  Similarity=0.517  Sum_probs=34.6

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.||.+.+..||.++.   +|..|+||+
T Consensus        23 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~---~g~~G~~P~   66 (88)
T 2cub_A           23 KFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSY---NGQVGWFPS   66 (88)
T ss_dssp             SSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEE---TTEEEEEEG
T ss_pred             ccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEE---CCcEEEEeh
Confidence            466666544   89999999999999999998887   577899998

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=96.73  E-value=0.00041  Score=51.02  Aligned_cols=45  Identities=18%  Similarity=0.246  Sum_probs=35.3

Q ss_pred             CCccccc-ccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPV-PQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v-~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+ ...   +|.+|++|.|+.+.+..||.++.. .+|..|+||+.
T Consensus        10 alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~   58 (65)
T 2j05_A           10 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNL-RTDEQGLIVED   58 (65)
T ss_dssp             ESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEET-TTCCEEEEEGG
T ss_pred             EccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEEC-CCCCEEEEEhH
Confidence            4577777 443   899999999999999999988621 24678999984

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.72  E-value=0.00043  Score=51.56  Aligned_cols=42  Identities=24%  Similarity=0.545  Sum_probs=34.1

Q ss_pred             CCcccccccc---ccccceeEEEeecC--CcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD--DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~--~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.++  +..||.++.   +|..|+||+
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~---~g~~G~~P~   58 (70)
T 2da9_A           12 VIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGEL---NGRRGVFPD   58 (70)
T ss_dssp             ECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEEC---SSCEEEEEG
T ss_pred             ECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEE---CCcEEEech
Confidence            3466665544   89999999999996  899999885   567899998

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=96.72  E-value=0.00045  Score=49.32  Aligned_cols=44  Identities=11%  Similarity=0.183  Sum_probs=34.0

Q ss_pred             Cccc-ccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAY-PVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~-~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.| .+...   +|.+|++|.|+.+.+..||.++.. ..|..|+||+.
T Consensus         6 l~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~-~~g~~G~~P~~   53 (58)
T 1zuy_A            6 AYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLL-DGSKEGWVPTA   53 (58)
T ss_dssp             SSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEES-SCSCEEEEEGG
T ss_pred             ecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEEC-CCCCEEEecHH
Confidence            4556 44333   899999999999999999988654 24778999984

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.71  E-value=0.00063  Score=54.18  Aligned_cols=42  Identities=31%  Similarity=0.658  Sum_probs=34.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++.   +|..|+||+
T Consensus        39 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   83 (98)
T 1udl_A           39 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI---NGVTGLFPS   83 (98)
T ss_dssp             ESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBS---SSCBCCEET
T ss_pred             ECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEE---CCcEEEEeh
Confidence            3466665544   89999999999999999998874   567899998

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.71  E-value=0.00039  Score=53.45  Aligned_cols=43  Identities=28%  Similarity=0.401  Sum_probs=35.3

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.||.+.+..||.++..   |..|+||+.
T Consensus        13 al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~---g~~G~~P~~   58 (80)
T 2ekh_A           13 TCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFG---ELEGWAPSH   58 (80)
T ss_dssp             ECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEET---TEEEEEETT
T ss_pred             ECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEEC---CCEEEEEhH
Confidence            3566766544   899999999999999999988754   678999993

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=96.71  E-value=0.00047  Score=53.67  Aligned_cols=45  Identities=31%  Similarity=0.593  Sum_probs=35.6

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++.. ..|..|+||+.
T Consensus        11 Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~-~~g~~G~~P~~   58 (84)
T 4ag1_C           11 ALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSL-TTGETGYIPSN   58 (84)
T ss_dssp             ESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEET-TTCCEEEEEGG
T ss_pred             EcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEEC-CCCCEEEEehH
Confidence            3466665544   899999999999999999988773 24567999983

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.71  E-value=0.00053  Score=52.34  Aligned_cols=43  Identities=26%  Similarity=0.537  Sum_probs=34.7

Q ss_pred             CCcccccccc---ccccceeEEEeecCC-cchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDD-HNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~-~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+ ..||.++..  .|..|+||+
T Consensus        18 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~--~g~~G~~P~   64 (78)
T 2dl5_A           18 VVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNK--VGQVGYVPE   64 (78)
T ss_dssp             ECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECT--TCCEEEEET
T ss_pred             EceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeC--CCCEEEEEh
Confidence            3466766544   899999999999986 999988765  277899998

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.70  E-value=0.00037  Score=53.09  Aligned_cols=42  Identities=19%  Similarity=0.267  Sum_probs=34.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++.   +|..|+||+
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   56 (78)
T 2yuo_A           12 ALLDFERHDDDELGFRKNDIITIISQKDEHCWVGEL---NGLRGWFPA   56 (78)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEG
T ss_pred             ECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEE---CCCEEEEeh
Confidence            3566666544   89999999999999999998764   467899998

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.70  E-value=0.00064  Score=51.84  Aligned_cols=42  Identities=21%  Similarity=0.412  Sum_probs=34.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   56 (79)
T 2yun_A           12 ALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSL---NGKKGHFPA   56 (79)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEES---SSCEEEECS
T ss_pred             ECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEE---CCCEEEEEh
Confidence            3466665544   89999999999999999999885   467899998

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.70  E-value=0.00039  Score=53.14  Aligned_cols=42  Identities=24%  Similarity=0.498  Sum_probs=34.6

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        22 al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~---~g~~G~~P~   66 (78)
T 2ed0_A           22 AIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVM---NGVTGLFPG   66 (78)
T ss_dssp             ECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEE---TTEEEEEET
T ss_pred             ECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEE---CCcEEEeCh
Confidence            4566665544   89999999999999999998885   567899998

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=96.69  E-value=0.00036  Score=53.61  Aligned_cols=42  Identities=24%  Similarity=0.368  Sum_probs=34.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcc-hhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHN-WWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~-w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+ ||.++.   .|..|+||+
T Consensus        15 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~---~g~~G~fP~   60 (80)
T 2i0n_A           15 ALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQL---NGKEGSFPV   60 (80)
T ss_dssp             ESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEE---TTEEEEEEG
T ss_pred             ECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEE---CCcEEEech
Confidence            3466665544   89999999999999998 998875   467899998

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=96.69  E-value=0.00051  Score=49.34  Aligned_cols=44  Identities=18%  Similarity=0.492  Sum_probs=33.9

Q ss_pred             Ccccccccc---ccccceeEEEeec-CCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISK-DDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k-~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .|.|.+...   +|.+|++|.|+.+ .+.+||.++.. .+|..|+||+.
T Consensus         8 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~~g~~G~~P~~   55 (60)
T 2v1q_A            8 QYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLV-DSGKSGLVPAQ   55 (60)
T ss_dssp             CSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEET-TTCCEEEEEGG
T ss_pred             eeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEEC-CCCCEEEEEHH
Confidence            455665444   8999999999999 59999988762 24678999983

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=96.69  E-value=0.00043  Score=50.34  Aligned_cols=44  Identities=11%  Similarity=0.231  Sum_probs=34.3

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.. ..|..|+||+.
T Consensus         9 l~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~-~~g~~G~fP~~   55 (62)
T 2fpe_A            9 IFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNM-RTGARGVFPAY   55 (62)
T ss_dssp             CSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEET-TTCCEEEEEGG
T ss_pred             CccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEEC-CCCCEEEechH
Confidence            466665544   899999999999999999987621 25678999983

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=96.68  E-value=0.00046  Score=60.21  Aligned_cols=45  Identities=24%  Similarity=0.581  Sum_probs=36.6

Q ss_pred             CCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        213 PDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       213 p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      ...|.|.+...   +|.+|++|.|+++.+.+||+++.  .+|..|+||+.
T Consensus       122 ~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~n  169 (174)
T 3qwx_X          122 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN--ALGTTGLVPAN  169 (174)
T ss_dssp             EESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEC--TTCCEEEEEGG
T ss_pred             EEecCcccCCCCccccccCCEEEEEEccCCCeEEEEE--CCCCEEEEChH
Confidence            34577776554   89999999999999999999885  35678999983

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.68  E-value=0.00033  Score=52.04  Aligned_cols=42  Identities=19%  Similarity=0.425  Sum_probs=33.6

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++..+  +..|+||+
T Consensus        13 lydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~--~~~G~~P~   57 (69)
T 2eqi_A           13 LYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGT--RIQQYFPS   57 (69)
T ss_dssp             SSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETT--EEEEEECG
T ss_pred             CeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECC--CCEEEEch
Confidence            466665544   8999999999999999999887653  33499998

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=96.68  E-value=0.00037  Score=49.94  Aligned_cols=44  Identities=18%  Similarity=0.321  Sum_probs=34.5

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++... .|..|+||+.
T Consensus         7 l~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~-~g~~G~~P~~   53 (59)
T 1yn8_A            7 LYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENES-GSKTGLVPEE   53 (59)
T ss_dssp             CSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTT-SSCEEEEEGG
T ss_pred             CccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECC-CCCEEEEehH
Confidence            456665544   8999999999999999999876542 3678999983

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.66  E-value=0.00051  Score=52.99  Aligned_cols=46  Identities=15%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             CCcccccccc---ccccceeEEEeecCCc-chhhhhccCCCCCccccCChh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDH-NWWQARKDNVAGSAGLIPSPE  260 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~-~w~~~~~~~~~~~~g~~p~~~  260 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+. .||.++ ...+|..|+||+.-
T Consensus        22 Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~-~~~~g~~G~~P~~y   71 (81)
T 1x6g_A           22 TKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVK-HHTSGQEGLLAAGA   71 (81)
T ss_dssp             ESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEE-ETTTCCEEEEEGGG
T ss_pred             ECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEE-eCCCCCEEEEehHH
Confidence            4566665544   8999999999999776 999876 22367889999843

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.66  E-value=0.00053  Score=52.39  Aligned_cols=42  Identities=24%  Similarity=0.549  Sum_probs=34.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCC----cchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDD----HNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~----~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||.+.+    ..||.++.   +|..|+||+
T Consensus        18 Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~---~g~~G~~P~   66 (79)
T 1uhc_A           18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEV---NGKKGYVPS   66 (79)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEES---SSCEEEEEG
T ss_pred             ECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEe---CCCEEEEch
Confidence            4567776544   899999999999997    89999974   567899998

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=96.66  E-value=0.00045  Score=50.04  Aligned_cols=42  Identities=14%  Similarity=0.355  Sum_probs=32.4

Q ss_pred             Ccccccccc---ccccceeEEEeec-CCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISK-DDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k-~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .|.|.+...   +|.+|++|.|+.+ .+..||.++..   |..|+||+.
T Consensus        11 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~---g~~G~~P~~   56 (63)
T 3eg3_A           11 LYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK---NGQGWVPSA   56 (63)
T ss_dssp             SSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEET---TEEEEEEGG
T ss_pred             cceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEEC---CCeEEEehH
Confidence            466665544   8999999999994 56779988874   567999983

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.65  E-value=0.00052  Score=51.17  Aligned_cols=41  Identities=22%  Similarity=0.468  Sum_probs=33.1

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+ +.+||.++.   +|..|+||+
T Consensus        13 al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~---~g~~G~~P~   56 (69)
T 1uhf_A           13 ALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI---GDRSGIFPS   56 (69)
T ss_dssp             CSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECS---TTCCEEECG
T ss_pred             EeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEe---CCcEEEEch
Confidence            4566765544   8999999999999 789998874   467899998

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=96.64  E-value=0.00053  Score=52.01  Aligned_cols=45  Identities=18%  Similarity=0.312  Sum_probs=35.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++... .|..|+||+.
T Consensus        10 Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~-~g~~G~~P~~   57 (73)
T 2lcs_A           10 ALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENES-GSKTGLVPEE   57 (73)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTT-SSCEEEEEST
T ss_pred             ECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECC-CCCEEEeeHH
Confidence            3466665544   8999999999999999999876542 3678999983

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.64  E-value=0.00064  Score=53.13  Aligned_cols=42  Identities=12%  Similarity=0.142  Sum_probs=33.6

Q ss_pred             CCcccccc--cc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVP--QF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~--~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|...  ..   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        21 alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~fP~   67 (88)
T 2dbk_A           21 AIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV---NGRKGLFPF   67 (88)
T ss_dssp             ECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEEC---SSCEEEECT
T ss_pred             EcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEe---CCCEEEEeh
Confidence            35666632  33   89999999999999999998855   467899998

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.64  E-value=0.00044  Score=54.24  Aligned_cols=44  Identities=20%  Similarity=0.413  Sum_probs=35.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++... .|..|+||+
T Consensus        22 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~-~g~~G~fP~   68 (90)
T 2yup_A           22 AQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITG-TGRQGIFPA   68 (90)
T ss_dssp             ECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTT-TCCEEEEEG
T ss_pred             EeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECC-CCCEEEEeh
Confidence            4566665544   8999999999999999999876542 367899998

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.63  E-value=0.00058  Score=50.84  Aligned_cols=44  Identities=16%  Similarity=0.411  Sum_probs=34.4

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcc-hhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHN-WWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~-w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.||.+.+.+ ||.++..  +|..|+||+.
T Consensus        12 alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~--~g~~G~~P~~   59 (70)
T 2ct4_A           12 AIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRK--EGGEGYVPTS   59 (70)
T ss_dssp             ESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECS--SSCEEEEEGG
T ss_pred             EcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeC--CCCEEEEEhH
Confidence            3566666544   89999999999998755 9988755  5788999983

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=96.62  E-value=0.00055  Score=50.80  Aligned_cols=45  Identities=16%  Similarity=0.245  Sum_probs=34.8

Q ss_pred             CCcccc-cccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYP-VPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~-v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|. +...   +|.+|++|.|+.+.+.+||.++.. ..|..|+||+.
T Consensus         7 alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~-~~g~~G~~P~~   55 (69)
T 1ruw_A            7 AAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLL-DGSKEGWVPTA   55 (69)
T ss_dssp             ESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEET-TSSCEEEEEGG
T ss_pred             EccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEEC-CCCCEEEEehH
Confidence            356673 4433   899999999999999999988654 23678999983

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=96.62  E-value=0.0006  Score=49.53  Aligned_cols=44  Identities=20%  Similarity=0.399  Sum_probs=33.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+++ +||.++.. .+|..|+||+.
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~-~Ww~g~~~-~~g~~G~~P~~   57 (62)
T 2iim_A           11 ALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSL-TTGQEGFIPFN   57 (62)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEET-TTCCEEEEEGG
T ss_pred             EcccCCCCCCCCcCCCCCCEEEEEEcCC-CEEEEEEC-CCCCEEEEEHH
Confidence            3466665544   899999999999976 99988731 14678999984

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=96.61  E-value=0.00059  Score=52.50  Aligned_cols=44  Identities=32%  Similarity=0.583  Sum_probs=35.1

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++.. .+|..|+||+.
T Consensus        11 lydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~-~~g~~G~~P~~   57 (79)
T 3cqt_A           11 LYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSL-TTGETGYIPSI   57 (79)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEET-TTCCEEEEEGG
T ss_pred             CccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEEC-CCCCEEEeehH
Confidence            466665544   899999999999999999988762 14678999984

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=96.61  E-value=0.00074  Score=50.60  Aligned_cols=43  Identities=14%  Similarity=0.287  Sum_probs=34.6

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.++ ..||.++....+|..|+||+
T Consensus        17 l~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~~g~~G~~P~   62 (74)
T 2m0y_A           17 FYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRKKSKKGIFPA   62 (74)
T ss_dssp             CSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSCSSCCEEECG
T ss_pred             ceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCCCCCEEEEeh
Confidence            466665544   89999999999996 78999887555678899998

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.60  E-value=0.00039  Score=52.11  Aligned_cols=44  Identities=18%  Similarity=0.265  Sum_probs=35.1

Q ss_pred             CCccccc-ccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPV-PQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v-~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+ ...   +|.+|++|.|+.+.+..||.++. -.+|..|+||+
T Consensus        12 Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~-~~~g~~G~~P~   59 (71)
T 2gqi_A           12 AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTN-LRTDEQGLIVE   59 (71)
T ss_dssp             ESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEEC-TTTCCEEEECT
T ss_pred             ECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEE-CCCCCEEEeeH
Confidence            4577777 544   89999999999999999998862 12477899998

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.60  E-value=0.00071  Score=50.20  Aligned_cols=42  Identities=19%  Similarity=0.578  Sum_probs=33.9

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.++ .+||.++.  .+|..|+||+
T Consensus        12 alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~--~~g~~G~~P~   56 (68)
T 1wxb_A           12 ILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRS--RSGQAGYVPC   56 (68)
T ss_dssp             CSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEEC--TTSCEEEEET
T ss_pred             ECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEE--CCCCEEEEEH
Confidence            4577776544   89999999999995 89998875  2477899998

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=96.60  E-value=0.00055  Score=56.29  Aligned_cols=46  Identities=20%  Similarity=0.348  Sum_probs=35.0

Q ss_pred             CCcccccccc---ccccceeEEEeec-CC--cchhhhhccC-----CCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISK-DD--HNWWQARKDN-----VAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k-~~--~~w~~~~~~~-----~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.||.+ ++  .+||.++..+     .+|..|+||+.
T Consensus        27 Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsn   83 (108)
T 1i1j_A           27 ALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS   83 (108)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGG
T ss_pred             ECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchh
Confidence            3566766654   8999999999999 33  4599988763     24889999993

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.60  E-value=0.00048  Score=52.70  Aligned_cols=42  Identities=26%  Similarity=0.585  Sum_probs=34.6

Q ss_pred             CCcccccccc---ccccceeEEEeecCC--cchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDD--HNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~--~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+  ..||.++.   +|..|+||+
T Consensus        22 al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~   68 (80)
T 2d8h_A           22 ALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKL---RGQTGIFPA   68 (80)
T ss_dssp             CSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEE---TTEEEEEEG
T ss_pred             ECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEE---CCEEEEEch
Confidence            4566665544   899999999999986  89999887   467899998

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=96.59  E-value=0.00054  Score=50.56  Aligned_cols=45  Identities=13%  Similarity=0.291  Sum_probs=34.8

Q ss_pred             CCccccc-ccc---ccccceeEEEeec-CCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPV-PQF---ITVCSVMFQIISK-DDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v-~~~---~~~~~~~~~vl~k-~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+ ...   +|.+|++|.|+.+ .+..||.++.. ..|..|+||+.
T Consensus        11 al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~~g~~G~~P~~   60 (67)
T 2kxc_A           11 TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHD-VSKARGWFPSS   60 (67)
T ss_dssp             ESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEES-SSCCEEEEEGG
T ss_pred             EeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEEC-CCCCEEEEehH
Confidence            3567775 333   8999999999997 89999987654 24678999983

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=96.59  E-value=0.00053  Score=49.69  Aligned_cols=45  Identities=16%  Similarity=0.273  Sum_probs=35.2

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.. ..|..|+||+.
T Consensus        11 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~-~~g~~G~~P~~   58 (64)
T 4f14_A           11 AMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQ-RTGRTGMLPAN   58 (64)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEET-TTTEEEEEEGG
T ss_pred             ECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEEC-CCCCEEEEeHH
Confidence            3466665544   899999999999999999988763 25667999983

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.59  E-value=0.00045  Score=51.41  Aligned_cols=42  Identities=17%  Similarity=0.421  Sum_probs=34.9

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+++..||.++..   |..|+||+
T Consensus        13 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~---g~~G~~P~   57 (70)
T 2ega_A           13 VVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTS---EEQGWVPA   57 (70)
T ss_dssp             CCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECS---SCEEEEEG
T ss_pred             ECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEEC---CCEEEEeh
Confidence            4566766544   899999999999999999998765   67899998

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=96.58  E-value=0.00057  Score=51.77  Aligned_cols=43  Identities=28%  Similarity=0.573  Sum_probs=33.9

Q ss_pred             Cccccccc---c-ccccceeEEEeecCCc-----chhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQ---F-ITVCSVMFQIISKDDH-----NWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~---~-~~~~~~~~~vl~k~~~-----~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .|.|.+..   + +|.+|++|.||++.+.     +||.++..  +|..|+||+.
T Consensus        13 ly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~--~G~~G~~Psn   64 (69)
T 1nm7_A           13 LYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK--NGNIGYIPYN   64 (69)
T ss_dssp             CSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEET--TTEEEEECGG
T ss_pred             EecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeC--CCCEEEecHH
Confidence            46666543   3 8999999999999975     99999873  3678999984

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.57  E-value=0.0005  Score=52.54  Aligned_cols=41  Identities=24%  Similarity=0.411  Sum_probs=33.7

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.   +|..|+||+
T Consensus        23 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~   66 (79)
T 1x69_A           23 LYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC---KGRYGLFPA   66 (79)
T ss_dssp             SSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEE---TTEEEEEET
T ss_pred             CccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEE---CCcEEEech
Confidence            455665543   89999999999999999998875   467899998

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=96.55  E-value=0.00066  Score=50.78  Aligned_cols=45  Identities=11%  Similarity=0.253  Sum_probs=35.4

Q ss_pred             CCCccccc-ccc---ccccceeEEEeec-CCcchhhhhccCCCCCccccCC
Q psy12793        213 PDKYAYPV-PQF---ITVCSVMFQIISK-DDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       213 p~~F~~~v-~~~---~~~~~~~~~vl~k-~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      ..+|.|.+ ...   +|.+|++|.|+.+ .+..||.++.. ..|..|+||+
T Consensus        11 ~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~-~~g~~G~fP~   60 (72)
T 1spk_A           11 KTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHD-TTKARGWFPS   60 (72)
T ss_dssp             ECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEET-TTCCEEEEEG
T ss_pred             EEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEEC-CCCCEEEEeh
Confidence            34577775 333   8999999999998 89999988654 2467899998

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=96.54  E-value=0.00068  Score=50.32  Aligned_cols=43  Identities=23%  Similarity=0.551  Sum_probs=34.3

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.++ .+||.++.  .+|..|+||+.
T Consensus        12 alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~--~~g~~G~~P~~   57 (68)
T 1wxt_A           12 VLYEFEARNPRELTVVQGEKLEVLDHS-KRWWLVKN--EAGRSGYIPSN   57 (68)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEEC--TTSCEEEEEGG
T ss_pred             ECceECCCCcCcCCCCCCCEEEEEEcC-CCEEEEEE--CCCCEEEEEhH
Confidence            4566766544   89999999999995 89998875  45788999983

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.54  E-value=0.00055  Score=54.07  Aligned_cols=43  Identities=16%  Similarity=0.319  Sum_probs=34.9

Q ss_pred             CCcccccccc---ccccceeEEEeecC--CcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD--DHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~--~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.  +.+||.++.+   |..|+||+.
T Consensus        10 Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~---g~~G~~P~~   57 (93)
T 1uff_A           10 ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ---GNFGWFPCN   57 (93)
T ss_dssp             ESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEET---TEEEEEETT
T ss_pred             ECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEEC---CCEEEechH
Confidence            3566766544   89999999999997  8899998854   678999993

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=96.54  E-value=0.00048  Score=52.10  Aligned_cols=42  Identities=24%  Similarity=0.582  Sum_probs=34.4

Q ss_pred             CCcccccccc---ccccceeEEEeecC-CcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD-DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~-~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+. +..||.++.   +|..|+||+
T Consensus        14 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~---~g~~G~~P~   59 (74)
T 1gbq_A           14 AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPK   59 (74)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEE---TTEEEEEEG
T ss_pred             ECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEE---CCCEEEEeh
Confidence            4567766544   89999999999998 779999885   567899998

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=96.53  E-value=0.00026  Score=54.94  Aligned_cols=42  Identities=12%  Similarity=0.330  Sum_probs=34.2

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++.   .|..|+||+.
T Consensus        24 lydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~---~g~~G~fP~n   68 (79)
T 1z9q_A           24 LFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTV---RGATGIFPLS   68 (79)
T ss_dssp             SSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEE---TTEEEEEEGG
T ss_pred             cCccCCCCCCcccccCCCEEEEeEecCCCEEEEEE---CCeEEEecHH
Confidence            466665544   89999999999999999998875   4678999983

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=96.53  E-value=0.00076  Score=50.15  Aligned_cols=43  Identities=19%  Similarity=0.546  Sum_probs=34.0

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.++ .+||.++..  +|..|+||+.
T Consensus        13 alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~--~g~~G~~P~~   58 (68)
T 2k2m_A           13 CNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDP--AGQEGYVPYN   58 (68)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECT--TSCCEEEEGG
T ss_pred             ECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeC--CCCEEEEEhh
Confidence            3566766544   89999999999997 799988652  4788999983

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=96.52  E-value=0.00065  Score=48.54  Aligned_cols=45  Identities=22%  Similarity=0.454  Sum_probs=34.6

Q ss_pred             CCcccccccc---ccccceeEEEeecCC-cchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDD-HNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~-~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+ ..||.++.. .+|..|+||+.
T Consensus         6 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~-~~g~~G~~P~~   54 (58)
T 1zuu_A            6 VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINND-TTGETGLVPTT   54 (58)
T ss_dssp             ECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEET-TTTEEEEEEGG
T ss_pred             EeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEEC-CCCCEEEEEHH
Confidence            3466665544   899999999999997 899988762 24567999973

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.51  E-value=0.0011  Score=49.20  Aligned_cols=44  Identities=14%  Similarity=0.224  Sum_probs=34.8

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.. .+|..|+||+
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~-~~g~~G~~P~   58 (70)
T 2ct3_A           12 AMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSR-RTQKFGTFPG   58 (70)
T ss_dssp             ESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEES-SSCCEEEECT
T ss_pred             ECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEEC-CCCCEEEech
Confidence            3466665544   899999999999999999987553 3477899998

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=96.51  E-value=0.00063  Score=56.60  Aligned_cols=44  Identities=11%  Similarity=0.181  Sum_probs=35.7

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+++ +||.++....+|..|+||+
T Consensus        64 Alydy~a~~~~eLsf~~Gd~i~vl~~~~-gWw~g~~~~~~g~~G~fP~  110 (119)
T 2rqr_A           64 AIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKHKMLQGIFPK  110 (119)
T ss_dssp             BCSCBCCCSTTBCCBCTTCEEEEEEEET-TEEEEEESSCTTCEEEEEG
T ss_pred             EccccCCCCCCcccCcCCCEEEEEEcCC-CEEEEEECCCCCCEEEeCh
Confidence            4577776654   899999999999975 9999987544678899998

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=96.51  E-value=0.00058  Score=53.36  Aligned_cols=43  Identities=14%  Similarity=0.492  Sum_probs=34.9

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++.   +|..|+||+.
T Consensus        22 Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~---~g~~G~~P~~   67 (83)
T 1neg_A           22 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAA   67 (83)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGG
T ss_pred             EccccCCCCCCccccCCCCEEEEEEecCCCEEEEEE---CCeEEEEEHH
Confidence            3566766544   89999999999999999998844   5678999983

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=96.50  E-value=0.00053  Score=50.95  Aligned_cols=35  Identities=20%  Similarity=0.554  Sum_probs=29.2

Q ss_pred             ccccceeEEEeec-CCcchhhhhccCCCCCccccCCh
Q psy12793        224 ITVCSVMFQIISK-DDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       224 ~~~~~~~~~vl~k-~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.+|++|.|+.+ .+..||.++.. .+|..|+||+.
T Consensus        28 sf~~Gd~i~v~~~~~~~~Ww~g~~~-~~g~~G~fP~~   63 (70)
T 1gcq_C           28 RLNPGDIVELTKAEAEHNWWEGRNT-ATNEVGWFPCN   63 (70)
T ss_dssp             CBCTTCEEEEEECCTTCSEEEEEET-TTTEEEEEEGG
T ss_pred             CcCCCCEEEEEeCCCCCCCeEEEeC-CCCCEeEeehH
Confidence            8999999999999 68999988522 35778999983

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.50  E-value=0.00061  Score=51.76  Aligned_cols=43  Identities=19%  Similarity=0.357  Sum_probs=34.3

Q ss_pred             CCccccccc-------c---ccccceeEEEeecCCc-chhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQ-------F---ITVCSVMFQIISKDDH-NWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~-------~---~~~~~~~~~vl~k~~~-~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+..       .   +|.+|++|.|+.+.+. .||.++.   +|..|+||+.
T Consensus        12 Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~---~g~~G~~P~~   65 (76)
T 2csi_A           12 ALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGEL---NGQKGLVPSN   65 (76)
T ss_dssp             CSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEE---TTEEEEEEGG
T ss_pred             EcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEE---CCcEEEEehH
Confidence            457776654       3   8999999999999886 6998876   5778999983

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=96.49  E-value=0.00061  Score=50.92  Aligned_cols=44  Identities=11%  Similarity=0.231  Sum_probs=34.4

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++.. ..|..|+||+.
T Consensus        12 l~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~-~~g~~G~fP~~   58 (71)
T 2fpf_A           12 IFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNM-RTGARGVFPAY   58 (71)
T ss_dssp             CSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEET-TTTEEEEEEGG
T ss_pred             CeeECccCCCcccCcCCcEEEEeEecCCCEEEEEEC-CCCCEEEeehH
Confidence            466665544   899999999999999999988621 24678999983

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=96.47  E-value=0.0008  Score=53.24  Aligned_cols=43  Identities=26%  Similarity=0.557  Sum_probs=34.8

Q ss_pred             CCcccccccc---ccccceeEEEeecC-----CcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD-----DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~-----~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||.++     +.+||.++..  .|..|+||+
T Consensus        34 Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~--~g~~G~fP~   84 (89)
T 2rf0_A           34 AVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLP--SGRVGVFPS   84 (89)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECT--TCCEEEEEG
T ss_pred             ECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEEC--CCCEEEEcH
Confidence            3566666544   89999999999996     8999998873  477899998

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=96.47  E-value=0.00077  Score=52.78  Aligned_cols=43  Identities=23%  Similarity=0.584  Sum_probs=34.2

Q ss_pred             CCcccccccc---ccccceeEEEeec--CCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISK--DDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k--~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+  .+.+||.++.  .+|..|+||+
T Consensus        22 alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~--~~g~~G~~P~   69 (91)
T 1wx6_A           22 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN--ARGQVGLVPK   69 (91)
T ss_dssp             ESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEEC--TTCCEEEEEG
T ss_pred             EeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEe--CCCCEEEEch
Confidence            3466665544   8999999999999  7899998873  2477899998

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.46  E-value=0.00054  Score=51.54  Aligned_cols=42  Identities=21%  Similarity=0.440  Sum_probs=33.8

Q ss_pred             CCcccccccc---ccccceeEEEee-cCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIIS-KDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~-k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||. +.+..||.++.   +|..|+||+
T Consensus        15 alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~---~g~~G~~P~   60 (72)
T 1ugv_A           15 ALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTL---NGKTGLIPE   60 (72)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEES---SSCEEEEEG
T ss_pred             EccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEE---CCcEEEecH
Confidence            4567766554   899999999998 47899999874   567899998

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.43  E-value=0.00095  Score=50.55  Aligned_cols=43  Identities=14%  Similarity=0.443  Sum_probs=34.8

Q ss_pred             CCcccccc-cc---ccccceeEEEeecC-CcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVP-QF---ITVCSVMFQIISKD-DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~-~~---~~~~~~~~~vl~k~-~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+. ..   +|.+|++|.|+.++ +..||.++..  .|..|+||+
T Consensus        14 al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~--~g~~G~~P~   61 (77)
T 2enm_A           14 VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNN--KGEQGLVPT   61 (77)
T ss_dssp             ESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECT--TCCEEEEET
T ss_pred             ECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEEC--CCCEEEeeh
Confidence            45667665 43   89999999999996 8999999843  478899998

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.42  E-value=0.00068  Score=54.03  Aligned_cols=43  Identities=14%  Similarity=0.254  Sum_probs=33.3

Q ss_pred             CCcccccc--------cc---ccccceeEEEeecCC-cchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVP--------QF---ITVCSVMFQIISKDD-HNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~--------~~---~~~~~~~~~vl~k~~-~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+.        ..   +|.+|++|.||.+.+ ..||+++.+   |..|+||+.
T Consensus        22 Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~---g~~G~~P~~   76 (97)
T 2csq_A           22 ALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC---ARLGLIPCN   76 (97)
T ss_dssp             CSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEET---TEEEEEETT
T ss_pred             EccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEEC---CcEEEEehH
Confidence            45777665        22   899999999998754 569999874   678999994

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.00089  Score=49.87  Aligned_cols=42  Identities=29%  Similarity=0.616  Sum_probs=32.9

Q ss_pred             Cccccccc----c-ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQ----F-ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~----~-~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+..    . +|.+|++|.|+.+ +.+||.++..  +|..|+||+.
T Consensus        11 lydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~--~g~~G~~P~~   57 (70)
T 2vkn_A           11 LYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRA--NGETGIIPSN   57 (70)
T ss_dssp             SSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECT--TSCEEEEEGG
T ss_pred             CccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEEC--CCCEEEEehH
Confidence            46666542    3 8999999999987 7899988644  6788999983

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=96.39  E-value=0.0013  Score=53.02  Aligned_cols=44  Identities=34%  Similarity=0.625  Sum_probs=34.8

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++.. .+|..|+||+.
T Consensus        33 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~~   79 (109)
T 2yt6_A           33 LYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSI-ATGKSGYIPSN   79 (109)
T ss_dssp             SSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEES-SSCCEEEECTT
T ss_pred             CccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEEC-CCCCEEEechH
Confidence            466665544   899999999999999999988752 24678999993

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=96.37  E-value=0.00061  Score=49.97  Aligned_cols=33  Identities=12%  Similarity=0.573  Sum_probs=29.0

Q ss_pred             ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        224 ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       224 ~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.+|++|.|+.+.+.+||.++.   +|..|+||+.
T Consensus         7 s~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   39 (63)
T 1tuc_A            7 TMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAA   39 (63)
T ss_dssp             CBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGG
T ss_pred             CCCCCCEEEEEEecCCCEEEEEE---CCcEEEEeHH
Confidence            78999999999999999999864   4678999983

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=96.37  E-value=0.00095  Score=52.02  Aligned_cols=42  Identities=24%  Similarity=0.524  Sum_probs=33.0

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+ +.+||.++..  +|..|+||+.
T Consensus        37 lydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~--~g~~G~~P~~   81 (86)
T 2jxb_A           37 KWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNA--ANRTGYVPSN   81 (86)
T ss_dssp             SSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECT--TSCEEEEEGG
T ss_pred             CccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEEC--CCCEEEeehH
Confidence            466665544   8999999999998 6799988743  5788999983

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=96.27  E-value=0.0012  Score=66.79  Aligned_cols=46  Identities=28%  Similarity=0.525  Sum_probs=37.6

Q ss_pred             CCCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        212 FPDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       212 ~p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      ...+|+|.+...   +|.+|++|.|+.++|.+||+++... .|..|+||+
T Consensus        88 ~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~-~g~~G~~P~  136 (535)
T 2h8h_A           88 FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLS-TGQTGYIPS  136 (535)
T ss_dssp             EEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETT-TCCEEEEEG
T ss_pred             EEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECC-CCcceEecc
Confidence            345688877655   8999999999999999999987631 467899999

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.26  E-value=0.00091  Score=51.30  Aligned_cols=42  Identities=17%  Similarity=0.374  Sum_probs=33.6

Q ss_pred             CCcccccccc---ccccceeEEEeecC--CcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD--DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~--~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.++  +..||.++.   +|..|+||+
T Consensus        22 al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~---~g~~G~~P~   68 (81)
T 1x43_A           22 VLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGER---GNQKGKVPI   68 (81)
T ss_dssp             ESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEE---TTEEEEEEG
T ss_pred             EcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEE---CCCEEEEeh
Confidence            3466666544   89999999999994  699998874   567899998

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=96.24  E-value=0.00094  Score=49.50  Aligned_cols=44  Identities=16%  Similarity=0.277  Sum_probs=34.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+..||.++.. .+|..|+||+
T Consensus        12 al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~~g~~G~~P~   58 (70)
T 2cuc_A           12 ALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSL-LTGRTGIFPS   58 (70)
T ss_dssp             CCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEET-TTCCEEEEEG
T ss_pred             ECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEEC-CCCCEEEEch
Confidence            4566766544   899999999999999999988721 2467899998

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.23  E-value=0.0057  Score=56.15  Aligned_cols=25  Identities=8%  Similarity=0.159  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ++|+|+||+||||+|+...|+....
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            5789999999999999999987643

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.0013  Score=48.87  Aligned_cols=43  Identities=19%  Similarity=0.505  Sum_probs=33.7

Q ss_pred             Ccccccccc---ccccceeEEEeecC-CcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKD-DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~-~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+. +.+||.++.. .+|..|+||+
T Consensus        12 l~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~~g~~G~~P~   58 (71)
T 2jt4_A           12 QYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLV-DSGKSGLVPA   58 (71)
T ss_dssp             CSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEET-TTCCEEEEEG
T ss_pred             cccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEEC-CCCCeEEech
Confidence            466665544   89999999999997 9999988762 1467899998

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=96.15  E-value=0.0019  Score=63.68  Aligned_cols=44  Identities=27%  Similarity=0.495  Sum_probs=35.9

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      ..|.|.+...   +|.+|++|.|+.++|.+||+++.. .+|..|+||+
T Consensus         7 al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~-~~g~~G~~P~   53 (452)
T 1fmk_A            7 ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSL-STGQTGYIPS   53 (452)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEET-TTCCEEEEEG
T ss_pred             ECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEc-CCCcccccCc
Confidence            4577776554   899999999999999999988762 1467899999

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.14  E-value=0.0011  Score=50.81  Aligned_cols=44  Identities=30%  Similarity=0.549  Sum_probs=33.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+. .+.+||.++.. ..|..|+||+.
T Consensus        22 Alydy~a~~~~eLs~~~Gd~i~v~~-~~~~Ww~~~~~-~~g~~G~~P~~   68 (79)
T 2cud_A           22 VLSDYPSPDISPPIFRRGEKLRVIS-DEGGWWKAISL-STGRESYIPGI   68 (79)
T ss_dssp             ESSCSSCTTTSCCSSCTTCEEEEEE-EETTEEEEEET-TTCCEEEEEGG
T ss_pred             EccCCCCCCCCcCCCCCCCEEEEEe-cCCCeEEEEEC-CCCCEEEeeHH
Confidence            4566766544   899999999999 57899988643 24678999983

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=96.10  E-value=0.0012  Score=50.35  Aligned_cols=34  Identities=12%  Similarity=0.530  Sum_probs=29.6

Q ss_pred             ccccceeEEEeecCCcchhhhhccCCCCCccccCChh
Q psy12793        224 ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPE  260 (352)
Q Consensus       224 ~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~  260 (352)
                      +|.+|++|.|+.+.+.+||.++.   +|..|+||+.-
T Consensus         9 s~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~y   42 (77)
T 2jmc_A            9 TMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAY   42 (77)
T ss_dssp             CCCTTCEEECCCCCCSSCCCEEE---TTEEECCCGGG
T ss_pred             CCCCCCEEEEEEecCCCEEEEEE---CCcEEEEEeeE
Confidence            78999999999999999998864   46789999843

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=96.07  E-value=0.0018  Score=48.80  Aligned_cols=40  Identities=15%  Similarity=0.417  Sum_probs=31.9

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.++ .+||.++.+   |..|+||+
T Consensus        16 l~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~---g~~G~~P~   58 (74)
T 1j3t_A           16 LCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEVH---GGRGWFPK   58 (74)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEEEC-SSEEEEEST---TCCCEEEG
T ss_pred             CCCCCCCCCCccCCCCCCEEEEEecC-CCEEEEEEC---CcEEEEch
Confidence            466665543   89999999999995 689988764   67899998

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=96.00  E-value=0.0018  Score=55.52  Aligned_cols=44  Identities=20%  Similarity=0.475  Sum_probs=35.1

Q ss_pred             CCcccccccc---ccccceeEEEeecC-CcchhhhhccCCCCCccccCChh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD-DHNWWQARKDNVAGSAGLIPSPE  260 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~-~~~w~~~~~~~~~~~~g~~p~~~  260 (352)
                      .+|.|.+...   +|.+|++|.||.+. +.+||.++.   .|..|+||+.-
T Consensus        10 Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~---~g~~G~fP~~y   57 (142)
T 2kbt_A           10 ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEI---YGRIGWFPSNY   57 (142)
T ss_dssp             ESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEE---TTEEEEEETTS
T ss_pred             ECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEE---CCeeEEechHH
Confidence            3566766544   89999999999994 899998886   46789999943

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=96.00  E-value=0.0018  Score=47.64  Aligned_cols=44  Identities=7%  Similarity=0.176  Sum_probs=33.1

Q ss_pred             CCccccccc----cccccceeEEEeec-CCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQ----FITVCSVMFQIISK-DDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~----~~~~~~~~~~vl~k-~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+..    .+|.+|++|.|+.+ .+..||.++.. ..|..|+||+
T Consensus        12 al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~-~~g~~G~fP~   60 (67)
T 3rnj_A           12 AIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESE-KTKMRGWFPF   60 (67)
T ss_dssp             ESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEET-TTCCEEEEEG
T ss_pred             EccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEEC-CCCCEEEEEH
Confidence            356676543    28999999999965 78899988732 2567899998

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=95.94  E-value=0.0019  Score=49.75  Aligned_cols=44  Identities=23%  Similarity=0.459  Sum_probs=33.7

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.| +||.++.. .+|..|+||+.
T Consensus        30 al~dy~~~~~~eLs~~~Gd~i~v~~~~~-~Ww~g~~~-~~g~~G~~P~~   76 (86)
T 2oi3_A           30 ALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKARSL-ATRKEGYIPSN   76 (86)
T ss_dssp             ESSCCCCSSSSCCCCCTTCEEEEEEESS-SEEEEEET-TTCCEEEEEGG
T ss_pred             ECccCCCCCCCcCcCCCCCEEEEEEcCC-CeEEEEEC-CCCCEEEEehH
Confidence            3466665543   899999999999995 99988772 24678999984

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=95.93  E-value=0.0061  Score=51.55  Aligned_cols=28  Identities=21%  Similarity=0.465  Sum_probs=24.5

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDK  215 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~  215 (352)
                      +++|+|+|++||||+|+.+.|.+..+..
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l~~~   30 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVLPEP   30 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            4689999999999999999999986543

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=95.91  E-value=0.0019  Score=49.12  Aligned_cols=44  Identities=27%  Similarity=0.566  Sum_probs=34.3

Q ss_pred             CCcccccc--c-c-ccccceeEEEeecCCc-----chhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVP--Q-F-ITVCSVMFQIISKDDH-----NWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~--~-~-~~~~~~~~~vl~k~~~-----~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+.  . . +|.+|++|.|+.+.+.     +||.++..  +|..|+||+.
T Consensus        19 alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~--~g~~G~~P~~   71 (80)
T 2v1r_A           19 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK--NGNIGYIPYN   71 (80)
T ss_dssp             ESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECT--TSCEEEEEGG
T ss_pred             ECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeC--CCCeEEEEHH
Confidence            34556544  3 3 7999999999999987     99988762  5778999984

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=95.91  E-value=0.0025  Score=50.13  Aligned_cols=43  Identities=23%  Similarity=0.415  Sum_probs=33.6

Q ss_pred             CCcccccccc---ccccceeEEEeecCC----cchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDD----HNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~----~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+    ..||.++..|.  ..|+||+
T Consensus        22 alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~--~~G~~P~   71 (93)
T 1wxu_A           22 AEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQ--TTGLIPA   71 (93)
T ss_dssp             ESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSS--SCEEECS
T ss_pred             ECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCc--CEEEEeh
Confidence            3466665544   899999999999998    69998865532  3899999

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=95.89  E-value=0.0029  Score=62.28  Aligned_cols=43  Identities=26%  Similarity=0.542  Sum_probs=36.0

Q ss_pred             CCcccccccc---ccccceeEEEeec-CCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISK-DDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k-~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      ..|+|.+...   +|.+|++|.|+.+ +|.+||.++..  .|..|+||+
T Consensus        16 aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~--~g~~G~~P~   62 (450)
T 1k9a_A           16 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK--VGREGIIPA   62 (450)
T ss_dssp             ESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECT--TCCEEEEEG
T ss_pred             ECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEEC--CCceeeech
Confidence            4577776654   8999999999999 78899988754  588899999

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=95.83  E-value=0.0022  Score=50.25  Aligned_cols=42  Identities=29%  Similarity=0.585  Sum_probs=33.2

Q ss_pred             Ccccccc--c-c-ccccceeEEEeecCCc-----chhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVP--Q-F-ITVCSVMFQIISKDDH-----NWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~--~-~-~~~~~~~~~vl~k~~~-----~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+.  . . +|.+|++|.|+.+.+.     +||.++.  .+|..|+||+
T Consensus        20 lydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~--~~g~~G~~P~   70 (92)
T 1jqq_A           20 LYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT--KNGNIGYIPY   70 (92)
T ss_dssp             SSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEE--TTSCEEEEEG
T ss_pred             CccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEe--CCCCEEEEeh
Confidence            4555543  3 3 7999999999999987     9999876  3577899998

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.80  E-value=0.0025  Score=48.69  Aligned_cols=43  Identities=14%  Similarity=0.254  Sum_probs=33.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+ +..||.++.. .+|..|+||+
T Consensus        22 al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~-~~g~~G~fP~   67 (79)
T 1x6b_A           22 ITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERL-RDGETGWFPE   67 (79)
T ss_dssp             ESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEET-TTCCEEEECG
T ss_pred             ECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEEC-CCCCEEEEch
Confidence            3466665543   8999999999999 9999988762 2467899998

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=95.77  E-value=0.0025  Score=50.34  Aligned_cols=45  Identities=13%  Similarity=0.284  Sum_probs=34.5

Q ss_pred             CCcccccccc---ccccceeEEEeecC--CcchhhhhccCC-CCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD--DHNWWQARKDNV-AGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~--~~~w~~~~~~~~-~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.||+++.||.+.  +++||-+|...- .+-.||+|+
T Consensus        22 alydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPs   72 (82)
T 1u3o_A           22 VLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPS   72 (82)
T ss_dssp             CSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEG
T ss_pred             EEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccc
Confidence            3466665544   89999999999987  599999987443 345699998

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=95.74  E-value=0.0013  Score=54.52  Aligned_cols=46  Identities=15%  Similarity=0.323  Sum_probs=36.0

Q ss_pred             CCcccccccc---ccccceeEEEee-----cCCcchhhhhcc------CC-CCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIIS-----KDDHNWWQARKD------NV-AGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~-----k~~~~w~~~~~~------~~-~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.     +.+..||.++..      ++ +|..|+||+.
T Consensus        49 Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsn  109 (115)
T 1bb9_A           49 AQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPEN  109 (115)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGG
T ss_pred             ECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechH
Confidence            3466766544   899999999999     899999998764      12 5778999983

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=95.69  E-value=0.0032  Score=49.08  Aligned_cols=42  Identities=24%  Similarity=0.404  Sum_probs=32.3

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .|.|.+...   +|.+|++|.|+.++ .+||.++.. ..|..|+||+
T Consensus         9 lydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~-~~g~~G~~P~   53 (90)
T 3reb_B            9 LYDYVSWSPDDLSFQKGDQMVVLEES-GEWWKARSL-ATRKEGYIPS   53 (90)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEECS-SSEEEEEET-TTCCEEEEEG
T ss_pred             CCccCcCCcCcCCCCCCCEEEEEEeC-CCEEEEEEC-CCCCEEEEeh
Confidence            466665544   89999999999995 689988762 1467899998

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=95.65  E-value=0.0032  Score=54.87  Aligned_cols=48  Identities=19%  Similarity=0.322  Sum_probs=36.5

Q ss_pred             CCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCChhHH
Q psy12793        213 PDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  262 (352)
Q Consensus       213 p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~  262 (352)
                      ..+|.|.+...   +|.+|++|.||.+ +.+||+++.. ..|..|+||+.-++
T Consensus        16 ~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~-~~g~~G~vP~~yv~   66 (175)
T 4d8k_A           16 IALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSL-TTGQEGFIPFNFVA   66 (175)
T ss_dssp             EESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEET-TTCCEEEEEGGGEE
T ss_pred             EEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEEC-CCCceeeecccccc
Confidence            34577776544   8999999999999 6799998862 24567999986554

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=95.64  E-value=0.0045  Score=44.95  Aligned_cols=33  Identities=12%  Similarity=0.437  Sum_probs=26.8

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhc
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARK  246 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~  246 (352)
                      .+|.|.+...   +|.+|++|.|+.+.|.+||.++.
T Consensus        26 alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A           26 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             EeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEe
Confidence            3566665544   89999999999999999998754

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=95.59  E-value=0.0013  Score=60.15  Aligned_cols=51  Identities=20%  Similarity=0.474  Sum_probs=39.8

Q ss_pred             CCCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHH
Q psy12793        212 FPDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW  264 (352)
Q Consensus       212 ~p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~  264 (352)
                      ...+|.|.+...   +|.+|++|.|+.+.|.+||.++.  .+|..|+||+.-++++
T Consensus       139 ~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~--~~g~~G~~P~~yv~~~  192 (230)
T 2dvj_A          139 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED--SEGKRGMIPVPYVEKY  192 (230)
T ss_dssp             CBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEEC--TTSCEEEEEGGGSCCC
T ss_pred             EEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEe--CCCCEEEEehHHeEEc
Confidence            445677776655   89999999999999999999872  2577899999554433

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=95.55  E-value=0.003  Score=58.30  Aligned_cols=43  Identities=26%  Similarity=0.641  Sum_probs=34.8

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      ..|+|.+...   +|.+|++|.|+++.+.+||.++.   .|..|+||+.
T Consensus         7 a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~---~g~~G~~P~~   52 (283)
T 3jv3_A            7 GMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEV---SGQVGLFPSN   52 (283)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEE---TTEEEEEEGG
T ss_pred             EccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEE---CCCCCcCCCc
Confidence            3566765544   89999999999999999998875   4678999984

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=95.54  E-value=0.0024  Score=58.66  Aligned_cols=47  Identities=15%  Similarity=0.323  Sum_probs=37.5

Q ss_pred             CCCCcccccccc---ccccceeEEEee-----cCCcchhhhhccC------C-CCCccccCC
Q psy12793        212 FPDKYAYPVPQF---ITVCSVMFQIIS-----KDDHNWWQARKDN------V-AGSAGLIPS  258 (352)
Q Consensus       212 ~p~~F~~~v~~~---~~~~~~~~~vl~-----k~~~~w~~~~~~~------~-~~~~g~~p~  258 (352)
                      +..+|.|.+...   +|.+|++|.||.     +.+.+||.++...      . +|..|+||+
T Consensus       145 ~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPs  206 (213)
T 1mv3_A          145 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPE  206 (213)
T ss_dssp             EEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEES
T ss_pred             EEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecH
Confidence            334677776655   899999999999     7899999988641      1 688999998

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.30  E-value=0.0043  Score=48.77  Aligned_cols=44  Identities=18%  Similarity=0.300  Sum_probs=33.6

Q ss_pred             CCcccccccc---ccccceeEEEeecC--C--cchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD--D--HNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~--~--~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.++  +  ..||.++.. .+|..|+||+
T Consensus        21 Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~-~~g~~G~fP~   71 (94)
T 2e5k_A           21 VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSL-TTGCSGLLPE   71 (94)
T ss_dssp             ECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEES-SSCCEEEEEG
T ss_pred             ECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEEC-CCCCEEEech
Confidence            4566766544   89999999999994  5  899988721 2466899998

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=95.29  E-value=0.0022  Score=49.39  Aligned_cols=43  Identities=14%  Similarity=0.291  Sum_probs=32.2

Q ss_pred             Ccccccccc---ccccceeEEEeec---------------CCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISK---------------DDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k---------------~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+               ++..||.++. ..+|..|+||+
T Consensus        11 lydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~-~~~g~~G~fP~   71 (83)
T 3i5r_A           11 LYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYN-ETTGERGDFPG   71 (83)
T ss_dssp             CSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEE-TTTTEEEEEEG
T ss_pred             ccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEe-CCCCCEEEEeh
Confidence            466665544   8999999999976               4568997743 23578899998

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=95.11  E-value=0.013  Score=48.73  Aligned_cols=24  Identities=13%  Similarity=0.236  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +.|+|+|++||||+|+.++|.+..
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999998864

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=95.05  E-value=0.0032  Score=49.53  Aligned_cols=44  Identities=9%  Similarity=0.177  Sum_probs=32.2

Q ss_pred             CCcccccccc---ccccceeEEEeec---------------CCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISK---------------DDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k---------------~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+               ++..||.++ ....|..|+||+
T Consensus        16 Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~-~~~~g~~G~fP~   77 (90)
T 3o5z_A           16 ALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGL-NERTRQRGDFPG   77 (90)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEE-ETTTCCEEEEEG
T ss_pred             EeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEE-eCCCCCEEEeeh
Confidence            4577776554   8999999999954               233799775 233578899998

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=95.04  E-value=0.0091  Score=59.57  Aligned_cols=44  Identities=16%  Similarity=0.387  Sum_probs=35.8

Q ss_pred             CCCCcccccccc---ccccceeEEEeecC-CcchhhhhccCCCCCccccCC
Q psy12793        212 FPDKYAYPVPQF---ITVCSVMFQIISKD-DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       212 ~p~~F~~~v~~~---~~~~~~~~~vl~k~-~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +..+|+|.+...   +|.+|++|.||.+. +.+||.++..   |..|+||+
T Consensus        46 ~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~---~~~G~~P~   93 (495)
T 1opk_A           46 FVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK---NGQGWVPS   93 (495)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECS---SCEEEEEG
T ss_pred             EEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeec---CCcceecc
Confidence            345677876655   89999999999987 8899988865   55699999

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=95.03  E-value=0.018  Score=53.93  Aligned_cols=29  Identities=14%  Similarity=0.344  Sum_probs=25.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ..+.+|||+|||||||+|+.++|....+.
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~~   59 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG   59 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34678999999999999999999988753

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=94.67  E-value=0.02  Score=48.83  Aligned_cols=26  Identities=31%  Similarity=0.474  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+.+++|+||+||||+|+.+.|...
T Consensus         7 ~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            7 LGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            45789999999999999999999775

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=94.63  E-value=0.023  Score=47.65  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++|+|.|++||||+|+.++|.+.
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~~   25 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIAK   25 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHhh
Confidence            357899999999999999999873

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=94.56  E-value=0.014  Score=57.26  Aligned_cols=44  Identities=23%  Similarity=0.449  Sum_probs=33.8

Q ss_pred             CCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        213 PDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       213 p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      ..+|.|.+...   +|.+|++|.|+.++ .+||.++. -..|..|+||+
T Consensus        12 ~al~~~~~~~~~el~~~~gd~~~v~~~~-~~W~~~~~-~~~g~~G~~P~   58 (454)
T 1qcf_A           12 VALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARS-LATRKEGYIPS   58 (454)
T ss_dssp             EESSCBCCCSTTBCCBCTTCEEEEEECC-TTEEEEEE-TTTCCEEEEEG
T ss_pred             EECcccCCcCCCcCcccCCCEEEEEecC-CCCeEEEE-CCCCceEEecc
Confidence            34577776654   89999999999995 78998872 12366799998

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=94.48  E-value=0.0062  Score=54.05  Aligned_cols=44  Identities=11%  Similarity=0.167  Sum_probs=34.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      ..|.|.+...   +|.+|++|.|+.+.+. ||.++....+|..|+||+
T Consensus        22 Alydf~~~~~~eLs~~~Gd~i~v~~~~~~-W~~g~~~~~~g~~G~fP~   68 (184)
T 3a98_A           22 AIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLIKHKMLQGIFPK   68 (184)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEEETT-EEEEEETTEEEEEEEEEG
T ss_pred             EeeeeCCCCCCCCCcCCCCEEEEEecCCC-EEEEEEecCCCceEEECc
Confidence            3466665544   8999999999999885 998877444577899998

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=94.37  E-value=0.028  Score=48.76  Aligned_cols=25  Identities=16%  Similarity=0.488  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+.|+|+|++||||+|+.+.|....
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998764

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=94.36  E-value=0.027  Score=46.32  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+|+|+||+||||+|+.+.| +..
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~   24 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KER   24 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHC
Confidence            57899999999999999999 543

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=94.30  E-value=0.011  Score=58.86  Aligned_cols=43  Identities=12%  Similarity=0.312  Sum_probs=35.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      ..|.|.+...   +|.+|++|.|+.+.+.+||.++..   |..|+||+.
T Consensus        35 al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~---g~~G~~P~~   80 (466)
T 2pz1_A           35 ALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVA---DGEGWFPAS   80 (466)
T ss_dssp             ESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEET---TEEEEEEGG
T ss_pred             EccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEEC---CcEEEEehh
Confidence            3577776554   899999999999999999988765   568999983

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=94.26  E-value=0.027  Score=47.58  Aligned_cols=25  Identities=20%  Similarity=0.347  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +.|+|.|++||||+|+.+.|.+...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999988654

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.20  E-value=0.033  Score=48.19  Aligned_cols=27  Identities=19%  Similarity=0.340  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+.+|+|.|++||||+|+.+.|.+..
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            346789999999999999999998753

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=94.19  E-value=0.032  Score=46.75  Aligned_cols=27  Identities=22%  Similarity=0.576  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ++..|+|+||+||||+|+.+.|.....
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            356799999999999999999988643

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=94.18  E-value=0.033  Score=47.31  Aligned_cols=25  Identities=20%  Similarity=0.390  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ++.|+|+|++||||+|+.+.|.+..
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998764

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=94.16  E-value=0.034  Score=48.45  Aligned_cols=28  Identities=18%  Similarity=0.414  Sum_probs=23.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..|+|+||+||||+|+.+.|....
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            3457899999999999999999998754

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=94.10  E-value=0.028  Score=48.13  Aligned_cols=24  Identities=25%  Similarity=0.497  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +.+++|+||+|+||+|+.+.|...
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcc
Confidence            467899999999999999999764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=94.05  E-value=0.04  Score=46.51  Aligned_cols=26  Identities=23%  Similarity=0.509  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +++.|+|.|++||||+|+.+.|.+..
T Consensus         5 ~~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998764

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.03  E-value=0.036  Score=46.80  Aligned_cols=26  Identities=23%  Similarity=0.434  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +..|+|.|++||||+|+.+.|.+...
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999988543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=93.96  E-value=0.039  Score=48.01  Aligned_cols=26  Identities=19%  Similarity=0.386  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .++.|+|+|++||||+|+.+.|....
T Consensus        24 ~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           24 AMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999998764

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=93.81  E-value=0.04  Score=46.82  Aligned_cols=26  Identities=12%  Similarity=0.344  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+.+|+|.|++||||+|+.+.|.+..
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            35689999999999999999998754

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=93.75  E-value=0.052  Score=46.87  Aligned_cols=29  Identities=17%  Similarity=0.405  Sum_probs=24.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +...+.|+|.|++||||+|+.++|.+...
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g   40 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS   40 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            34567899999999999999999987653

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=93.72  E-value=0.053  Score=46.66  Aligned_cols=26  Identities=15%  Similarity=0.383  Sum_probs=23.1

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..|+|+|++||||+|+.+.|.+.
T Consensus         8 ~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            8 PKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            34678999999999999999999886

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=93.54  E-value=0.052  Score=47.26  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..|+|+|||||||+|+.+.|....
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999987754

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=93.51  E-value=0.058  Score=45.46  Aligned_cols=25  Identities=20%  Similarity=0.519  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .+..|+|+|++||||+|+.+.|...
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4678999999999999999998775

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=93.51  E-value=0.054  Score=46.48  Aligned_cols=26  Identities=12%  Similarity=0.243  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+..|+|.|++||||+|+.+.|.+..
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999999875

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=93.37  E-value=0.056  Score=46.42  Aligned_cols=26  Identities=15%  Similarity=0.217  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +..|+|.|++||||+|+.+.|.+...
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            46899999999999999999988644

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=93.20  E-value=0.058  Score=45.89  Aligned_cols=26  Identities=19%  Similarity=0.520  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+..|+|.|++||||+|+.+.|.+..
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998764

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=93.19  E-value=0.053  Score=49.28  Aligned_cols=27  Identities=33%  Similarity=0.570  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+.|+|+||+||||+|...+|++.+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            355788999999999999999998863

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=93.12  E-value=0.076  Score=45.95  Aligned_cols=27  Identities=26%  Similarity=0.383  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..|+|.|++||||+|+.+.|.+..
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999998764

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=93.12  E-value=0.061  Score=45.63  Aligned_cols=26  Identities=27%  Similarity=0.446  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+.|+|+|++||||+|+.+.|.+..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998764

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=93.08  E-value=0.063  Score=44.84  Aligned_cols=25  Identities=20%  Similarity=0.488  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ++.|+|.|++||||+|+.+.|.+..
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            2 TEPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999998753

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=92.94  E-value=0.067  Score=46.18  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .+..|+|.|++||||+|+.+.|.+.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999875

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=92.88  E-value=0.061  Score=45.57  Aligned_cols=25  Identities=20%  Similarity=0.507  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +..|+|+|++||||+|+.+.|.+..
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999998753

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=92.85  E-value=0.071  Score=45.00  Aligned_cols=25  Identities=20%  Similarity=0.472  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +..|+|.|++||||+|+.++|.+..
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999998753

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=92.75  E-value=0.064  Score=47.25  Aligned_cols=27  Identities=15%  Similarity=0.265  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .+..|+|.|++||||+|+.++|.+...
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            346799999999999999999988654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=92.71  E-value=0.071  Score=44.91  Aligned_cols=27  Identities=30%  Similarity=0.629  Sum_probs=18.8

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .+..|+|.|++||||+|+.+.|.+...
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            346899999999999999999987654

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=92.69  E-value=0.08  Score=46.41  Aligned_cols=27  Identities=30%  Similarity=0.463  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..|.|+|||||||+|+.+.|....
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~   46 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAAL   46 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            457789999999999999999887754

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=92.56  E-value=0.077  Score=45.21  Aligned_cols=25  Identities=24%  Similarity=0.549  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ++.|+|.|++||||+|+.+.|.+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998864

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=92.50  E-value=0.083  Score=47.87  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ....|+|+||+||||+|+.++|.+.+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            44679999999999999999998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=92.48  E-value=0.087  Score=45.98  Aligned_cols=24  Identities=29%  Similarity=0.624  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .|+|+||+||||+|+.++|.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~   25 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYG   25 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            478999999999999999988654

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=92.44  E-value=0.077  Score=45.04  Aligned_cols=25  Identities=28%  Similarity=0.457  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+.|+|+|++||||+|+.+.|.+..
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            3568999999999999999998753

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=92.34  E-value=0.079  Score=44.79  Aligned_cols=24  Identities=25%  Similarity=0.582  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +.|+|+|++||||+|+.+.|....
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998764

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=92.34  E-value=0.087  Score=46.65  Aligned_cols=27  Identities=22%  Similarity=0.509  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .+..|+|.|++||||+|+.++|.+...
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~   32 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFE   32 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            346899999999999999999987653

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=92.22  E-value=0.072  Score=47.74  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|||+||+||||+|...+|++.+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47889999999999999998864

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=92.15  E-value=0.097  Score=44.60  Aligned_cols=24  Identities=21%  Similarity=0.523  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .|+|.|++||||+|+.+.|.+...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999988643

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=92.14  E-value=0.092  Score=45.56  Aligned_cols=26  Identities=15%  Similarity=0.316  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+..|.|+||+||||+|+.+.|....
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45678899999999999999988753

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=92.13  E-value=0.1  Score=46.82  Aligned_cols=24  Identities=21%  Similarity=0.393  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +..|+|+||+||||+|+.+.|.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~   50 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQN   50 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999864

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=92.12  E-value=0.088  Score=45.88  Aligned_cols=23  Identities=30%  Similarity=0.683  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|+||+||||+|+.++|.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=91.82  E-value=0.12  Score=45.39  Aligned_cols=25  Identities=28%  Similarity=0.547  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +..|+|.|++||||+|+.++|.+..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4679999999999999999998764

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=91.80  E-value=0.1  Score=44.27  Aligned_cols=26  Identities=27%  Similarity=0.584  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .++.++|.||+|+||+|+...++...
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~   62 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAI   62 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            36889999999999999999887643

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=91.76  E-value=0.14  Score=43.64  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..|+|.|++||||+|+.+.|....
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l   37 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLL   37 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999997753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=91.75  E-value=0.091  Score=44.86  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=19.0

Q ss_pred             CCcEEEEEcCCCCChhHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNT  207 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~  207 (352)
                      .+.+++|+|||||||+|+.+.
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHH
Confidence            567899999999999999985

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=91.73  E-value=0.053  Score=46.93  Aligned_cols=25  Identities=24%  Similarity=0.509  Sum_probs=21.7

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ++|+|.|++||||+|+.++|.....
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999987643

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=91.68  E-value=0.11  Score=47.21  Aligned_cols=27  Identities=22%  Similarity=0.422  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .+..|+|+|++||||+|+.+.|.....
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            456899999999999999999988764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=91.66  E-value=0.11  Score=44.88  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCChhHHHHHHHh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ..|.|+|++||||+|+.+.|..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999999976

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=91.65  E-value=0.12  Score=43.61  Aligned_cols=23  Identities=17%  Similarity=0.351  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|.|++||||+|+.+.|.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999998853

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=91.49  E-value=0.14  Score=44.80  Aligned_cols=23  Identities=13%  Similarity=0.382  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..|.|.||+||||+|+.+.|...
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999999875

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=91.45  E-value=0.12  Score=47.39  Aligned_cols=25  Identities=24%  Similarity=0.476  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .++|+|.|++||||+|+.++|.+..
T Consensus         2 ~~~I~l~G~~GsGKST~a~~L~~~~   26 (301)
T 1ltq_A            2 KKIILTIGCPGSGKSTWAREFIAKN   26 (301)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhC
Confidence            3578999999999999999998754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=91.34  E-value=0.15  Score=46.03  Aligned_cols=27  Identities=15%  Similarity=0.364  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .+..|+|.|++||||+|+.++|.+...
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            578999999999999999999998754

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=91.22  E-value=0.14  Score=44.36  Aligned_cols=27  Identities=19%  Similarity=0.380  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .+..|.|+|++||||+|+.+.|....+
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~   46 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHLP   46 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            457889999999999999999987653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=91.12  E-value=0.15  Score=46.02  Aligned_cols=28  Identities=7%  Similarity=0.120  Sum_probs=22.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .....|.|.|++||||+|+.+.|.....
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3445788999999999999999988643

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=91.06  E-value=0.16  Score=43.10  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .+..|+|.|++||||+|+.+.|...
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999774

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=91.04  E-value=0.16  Score=41.83  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+.++|.||+|+||+++...++..
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            4578999999999999999988775

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=91.03  E-value=0.14  Score=44.46  Aligned_cols=23  Identities=17%  Similarity=0.657  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+.|+||||+||+|+.+.|....
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999887754

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=90.95  E-value=0.14  Score=44.05  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChhHHHHHHHh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ..|+|+|++||||+|+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4688999999999999999987

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=90.88  E-value=0.17  Score=44.16  Aligned_cols=26  Identities=19%  Similarity=0.278  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +.+.++|+|++||||+|+.++|+...
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            35688999999999999999998753

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=90.83  E-value=0.16  Score=46.36  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +.+|+|.|++||||+|+.+.|...
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHH
Confidence            468999999999999999999875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=90.82  E-value=0.16  Score=43.30  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ....|.|+|++||||+|+.+.|.+.
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3467899999999999999999876

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=90.81  E-value=0.21  Score=42.77  Aligned_cols=29  Identities=17%  Similarity=0.285  Sum_probs=24.8

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ..+..+.|+||+|+||+|+.+.+....|.
T Consensus        31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l~~   59 (158)
T 1htw_A           31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            46778999999999999999999886553

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=90.73  E-value=0.1  Score=45.60  Aligned_cols=27  Identities=22%  Similarity=0.266  Sum_probs=23.0

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...+..|.|+|++||||+|+.+.|...
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            345678999999999999999988774

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=90.72  E-value=0.17  Score=42.27  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+.|+|.|++||||+|+.+.|.+.
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999875

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=90.59  E-value=0.35  Score=40.29  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=23.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .....-|+|+|++||||+++.++|+...
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           20 PPLKGEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CCTTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHcCc
Confidence            3345578899999999999999998865

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=90.50  E-value=0.18  Score=44.07  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+.+|+|.|++||||+|+.+.|....
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l   49 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQL   49 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998754

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=90.48  E-value=0.05  Score=54.89  Aligned_cols=47  Identities=21%  Similarity=0.412  Sum_probs=0.0

Q ss_pred             CCCcccccccc---ccccceeEEEeecCC-cchhhhhccCCCCCccccCChhH
Q psy12793        213 PDKYAYPVPQF---ITVCSVMFQIISKDD-HNWWQARKDNVAGSAGLIPSPEL  261 (352)
Q Consensus       213 p~~F~~~v~~~---~~~~~~~~~vl~k~~-~~w~~~~~~~~~~~~g~~p~~~~  261 (352)
                      ..+|.|.+...   +|.+|++|.||.+.+ ..||.++..  .|..|+||+--+
T Consensus       432 ~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~--~g~~G~~P~nyv  482 (486)
T 3haj_A          432 RALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLD--NGQVGLYPANYV  482 (486)
T ss_dssp             -----------------------------------------------------
T ss_pred             EEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeC--CCCEEEEeHHHc
Confidence            34577776554   899999999999985 589987765  467899998443

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=90.36  E-value=0.2  Score=43.27  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+.++|.||+|+||+++...+...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999999988764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=90.28  E-value=0.22  Score=44.39  Aligned_cols=26  Identities=35%  Similarity=0.510  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+..|+|.|++||||+|+.++|.+..
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	352
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	2e-23
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	4e-08
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	1e-22
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	2e-07
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	2e-21
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	2e-07
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	6e-15
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	2e-05
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	3e-11
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	5e-04
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	3e-09
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	4e-09
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	4e-09
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	6e-09
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	8e-09
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	2e-08
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	3e-08
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	3e-08
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	4e-08
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	4e-08
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	1e-07
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-07
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	3e-07
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	4e-07
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	8e-07
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	1e-06
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	1e-06
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	1e-06
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	2e-06
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	2e-06
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	2e-06
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	5e-06
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	5e-06
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	5e-06
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	7e-06
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	7e-06
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-05
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-05
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	2e-05
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-05
d1kgda_	178	c.37.1.1 (A:) Guanylate kinase-like domain of Cask	3e-05
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	5e-05
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	6e-05
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	1e-04
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	1e-04
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	2e-04
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	6e-04
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	0.001
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	0.003
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	0.003

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 90.8 bits (225), Expect = 2e-23
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSP- 125
            VR    Y+   +D +P     I+F+  D L +  K +++WW  R        G IPSP 
Sbjct: 23  AVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV 82

Query: 126 ELQEWRTA 133
           +L+  R  
Sbjct: 83  KLENMRLQ 90

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 48.4 bits (115), Expect = 4e-08
 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 232 QIISKDDHNWWQARKDNVAGSAGLIPSP-ELQEWRTA 267
            +  K +++WW  R        G IPSP +L+  R  
Sbjct: 54  HVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQ 90

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 90.1 bits (223), Expect = 1e-22
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
              VR   +Y  + D+  P   +G+ F+  D L I  K  ++WW  R     G    IPS
Sbjct: 23  AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPS 82

Query: 125 P-ELQEWRTA 133
           P  L+  R  
Sbjct: 83  PQRLESIRLK 92

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 17/76 (22%), Positives = 24/76 (31%), Gaps = 6/76 (7%)

Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSP-ELQEWRTACSTIDKTKHEQGIYSSFSLPF 288
              I  K  ++WW  R     G    IPSP  L+  R       +        +  SL  
Sbjct: 54  FLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQKARRSG-----NPSSLSD 108

Query: 289 SVYRRDTTRSPRSDEE 304
              RR    S    ++
Sbjct: 109 IGNRRSPPPSLAKQKQ 124

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.1 bits (215), Expect = 2e-21
 Identities = 18/75 (24%), Positives = 30/75 (40%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
            V+   +Y    D+ +P   + ++F   D L I  K +++WW  R        G IPSP 
Sbjct: 25  AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPL 84

Query: 127 LQEWRTACSTIDKTK 141
             E         + +
Sbjct: 85  RLENIRIQQEQKRKR 99

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.8 bits (113), Expect = 2e-07
 Identities = 15/72 (20%), Positives = 20/72 (27%)

Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTIDKTKHEQGIYSSFSLPFS 289
              I  K +++WW  R        G IPSP   E         + +   G  S  S    
Sbjct: 54  FLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQKRKRFHGGKSSGNSSSSL 113

Query: 290 VYRRDTTRSPRS 301
                 T     
Sbjct: 114 GEMVSGTFRATP 125

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.8 bits (165), Expect = 6e-15
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 5/68 (7%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARK---DNVAGSAGLIP 123
           ++RA F+Y+   D         ++F+ GD+L +I   D  WWQAR+   D+     G IP
Sbjct: 3   YIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIP 60

Query: 124 SPELQEWR 131
           S    E R
Sbjct: 61  SKRRVERR 68

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 230 MFQIISKDDHNWWQARK---DNVAGSAGLIPSPELQEWR 265
           +  +I   D  WWQAR+   D+     G IPS    E R
Sbjct: 30  VLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERR 68

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (135), Expect = 3e-11
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 9/64 (14%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
           +VRA F++N  D++ +P       F+ GDIL+I  K +  WW A      G  G+IP P 
Sbjct: 3   YVRALFDFNGNDEEDLP-------FKKGDILRIRDKPEEQWWNAEDSE--GKRGMIPVPY 53

Query: 127 LQEW 130
           ++++
Sbjct: 54  VEKY 57

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.4 bits (82), Expect = 5e-04
 Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)

Query: 230 MFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEW 264
           + +I  K +  WW A      G  G+IP P ++++
Sbjct: 25  ILRIRDKPEEQWWNAEDSE--GKRGMIPVPYVEKY 57

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 50.4 bits (121), Expect = 3e-09
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           FV+A F++NP +          +AF+ GD++ +I+KDD NWW+ + +      G+ PS
Sbjct: 4   FVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQLN---NRRGIFPS 51

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (121), Expect = 4e-09
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
           V A ++Y P++ +        +  + GD   I+ + +  WW+AR  N  G  G IPS  +
Sbjct: 11  VVALYDYMPMNAN-------DLQLRKGDEYFILEESNLPWWRARDKN--GQEGYIPSNYV 61

Query: 128 QE 129
            E
Sbjct: 62  TE 63

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (120), Expect = 4e-09
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +V+A F+++P +D         + F+ GD + ++   D NWW+       G  G+ P 
Sbjct: 3   YVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGACH---GQTGMFPR 50

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (120), Expect = 6e-09
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 10/65 (15%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           Q+ V+A+FN+   ++D        ++   GDI+ +   ++  WW+   +   G  G  PS
Sbjct: 10  QLIVKARFNFKQTNED-------ELSVCKGDIIYVTRVEEGGWWEGTLN---GRTGWFPS 59

Query: 125 PELQE 129
             ++E
Sbjct: 60  NYVRE 64

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.9 bits (117), Expect = 8e-09
 Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
            V A ++Y              +  + GDIL +++  + +WW+   +      G +P+  
Sbjct: 2   LVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEVN---DRQGFVPAAY 51

Query: 127 LQE 129
           +++
Sbjct: 52  VKK 54

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           VRA +++  ++D+        + F+ G+++ ++   D NWWQ          GL PS
Sbjct: 5   VRALYDFEAVEDN-------ELTFKHGELITVLDDSDANWWQGENH---RGTGLFPS 51

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
           V A F+Y     +        + FQ GDI+ ++SK +  W +       G  G+ P   +
Sbjct: 8   VEALFSYEATQPE-------DLEFQEGDIILVLSKVNEEWLEGESK---GKVGIFPKVFV 57

Query: 128 QE 129
           ++
Sbjct: 58  ED 59

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.9 bits (114), Expect = 3e-08
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 9/63 (14%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
            V A +++   +          +  + G    I+ K+D +WW+AR     GS G IPS  
Sbjct: 4   IVVAMYDFQATEAH-------DLRLERGQEYIILEKNDLHWWRARDKY--GSEGYIPSNY 54

Query: 127 LQE 129
           +  
Sbjct: 55  VTG 57

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 4e-08
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +  V+A F+Y    +D        + F    I+Q + K +  WW+             PS
Sbjct: 6   KCAVKALFDYKAQRED-------ELTFIKSAIIQNVEKQEGGWWRGDYGGKKQ--LWFPS 56

Query: 125 PELQE 129
             ++E
Sbjct: 57  NYVEE 61

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (112), Expect = 4e-08
 Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           + RA +++  L++D        + F+ G++++++   + +WW  R        GL P+
Sbjct: 3   WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGRLH---NKLGLFPA 50

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.9 bits (109), Expect = 1e-07
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 8/58 (13%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +  A+++Y+  +D+        + F   D +  I   D +WW    +   GS GL PS
Sbjct: 2   WATAEYDYDAAEDN-------ELTFVENDKIINIEFVDDDWWLGELEK-DGSKGLFPS 51

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           V A ++Y   ++D        ++F  G ++ +++KDD +WWQ   +   G  GL PS
Sbjct: 37  VIAMYDYAANNED-------ELSFSKGQLINVMNKDDPDWWQGEIN---GVTGLFPS 83

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (106), Expect = 3e-07
 Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 8/57 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            RA ++Y   D D        ++F+ GD +  +   D  W         G  G++P+
Sbjct: 6   FRAMYDYMAADAD-------EVSFKDGDAIINVQAIDEGWMYGTVQR-TGRTGMLPA 54

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 44.1 bits (104), Expect = 4e-07
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
           V A ++Y   D          +A +  +   ++   + +WW+ +  N  G  G  PS  L
Sbjct: 1   VIALYDYQTNDPQ-------ELALRCDEEYYLLDSSEIHWWRVQDKN--GHEGYAPSSYL 51

Query: 128 QE 129
            E
Sbjct: 52  VE 53

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (103), Expect = 8e-07
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 13/63 (20%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-----HNWWQARKDNVAGSAGL 121
           F RA +++ P + +        +A + GD++ I+SK D      +WW+ R  N  G+ G 
Sbjct: 7   FARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN--GNIGY 58

Query: 122 IPS 124
           IP 
Sbjct: 59  IPY 61

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (102), Expect = 1e-06
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 65  QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +I V A ++Y  +  +        ++FQ GD + ++ +    W            G IPS
Sbjct: 4   RIIVVALYDYEAIHHE-------DLSFQKGDQMVVLEESGEWWKARSLAT--RKEGYIPS 54

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 63  ILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLI 122
           ++  FV A ++Y    +         ++F+ G+ LQI++  + +WW A      G  G I
Sbjct: 1   MVTTFV-ALYDYESRTET-------DLSFKKGERLQIVNNTEGDWWLAHS-LSTGQTGYI 51

Query: 123 PS 124
           PS
Sbjct: 52  PS 53

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 8/57 (14%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A ++Y  + +D        ++F  G+  QI++  + +WW+AR     G  G IPS
Sbjct: 3   FVALYDYEAITED-------DLSFHKGEKFQILNSSEGDWWEARS-LTTGETGYIPS 51

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 10/63 (15%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK-DDHNWWQARKDNVAGSAGLIPSPE 126
             A++N++   +         + F  GD+L I++   D NW++A+     G  G+IP+  
Sbjct: 9   CIAKYNFHGTAEQ-------DLPFCKGDVLTIVAVTKDPNWYKAKNKV--GREGIIPANY 59

Query: 127 LQE 129
           +Q+
Sbjct: 60  VQK 62

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 11/60 (18%), Positives = 29/60 (48%), Gaps = 11/60 (18%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH--NWWQARKDNVAGSAGLIPS 124
            V+  + ++ + ++        + F+ G+ +++I K ++   WW+ +     G  GL+P 
Sbjct: 8   VVQTLYPFSSVTEE-------ELNFEKGETMEVIEKPENDPEWWKCKNAR--GQVGLVPK 58

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 10/57 (17%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           V+  F +   ++         ++F  GD+L ++  ++ + W   + +   + G  PS
Sbjct: 10  VKTIFPHTAGNNK------TLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPS 60

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 5e-06
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
             A   Y  ++ D        ++   G+ +++I K    WW  RKD      G  PS  L
Sbjct: 17  YVAIKAYTAVEGD-------EVSLLEGEAVEVIHKLLDGWWVIRKD---DVTGYFPSMYL 66

Query: 128 QE 129
           Q+
Sbjct: 67  QK 68

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (97), Expect = 5e-06
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 13/60 (21%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN---WWQARKDNVAGSAGLIPS 124
           + A ++Y P +DD        +  + GD + II ++D +   WW AR +      G +P 
Sbjct: 7   IYALWDYEPQNDD-------ELPMKEGDCMTIIHREDEDEIEWWWARLN---DKEGYVPR 56

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (97), Expect = 5e-06
 Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 9/57 (15%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            +A +      D         ++F  G +   +       W     N  G  GLIP 
Sbjct: 13  AKALYACKAEHDS-------ELSFTAGTVFDNVHPSQEPGWLEGTLN--GKTGLIPE 60

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 7e-06
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
            V A  +Y P  D         + F+ G+ L+I+ +    W         G  G IP   
Sbjct: 8   LVIALHSYEPSHDG-------DLGFEKGEQLRILEQSGEWWKAQSLTT--GQEGFIPFNF 58

Query: 127 LQE 129
           + +
Sbjct: 59  VAK 61

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 7e-06
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPE 126
              A+++YNP D       +A +    G  L +    D + +   +  + G  GL+PS  
Sbjct: 19  LCVARYSYNPFDG-PNENPEAELPLTAGKYLYVYGDMDEDGFYEGE-LLDGQRGLVPSNF 76

Query: 127 LQE 129
           +  
Sbjct: 77  VDF 79

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 8/62 (12%), Positives = 22/62 (35%), Gaps = 11/62 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL 127
            +A  ++    D+        + F   DI+ ++ + ++ W+           G  P   +
Sbjct: 13  AQALCSWTAKKDN-------HLNFSKHDIITVLEQQENWWFGEVHGGR----GWFPKSYV 61

Query: 128 QE 129
           + 
Sbjct: 62  KI 63

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 11/57 (19%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A + Y+ ++          + F  G+ + +  KD   WW          +G+ PS
Sbjct: 11  YIALYPYSSVEPG-------DLTFTEGEEILVTQKDG-EWWTGSIG---DRSGIFPS 56

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (93), Expect = 2e-05
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 11/58 (18%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIIS-KDDHNWWQARKDNVAGSAGLIPS 124
             A++++    DD +        F+ GDIL++++ + D NW++A  +   G  G IP 
Sbjct: 3   AIAKYDFKATADDELS-------FKRGDILKVLNEECDQNWYKAELN---GKDGFIPK 50

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 9/65 (13%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKD--NVAGSAGLIPS 124
             +    Y     +        ++   G ++ I+ K+   WWQ            G  P+
Sbjct: 9   IAQVTSAYVASGSE-------QLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPA 61

Query: 125 PELQE 129
             ++ 
Sbjct: 62  SHVKL 66

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 29/34 (85%), Positives = 32/34 (94%)

Query: 188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVP 221
           RKTLVLLGAHGVGRRHIKNTLI K PD++AYP+P
Sbjct: 3   RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIP 36

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.0 bits (90), Expect = 5e-05
 Identities = 9/65 (13%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVA---GSAGLIPS 124
           +    +Y  L ++        I    G+++Q+++ +  N     +        + G +P 
Sbjct: 10  MTVIKDYYALKEN-------EICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPG 62

Query: 125 PELQE 129
             L  
Sbjct: 63  SILAP 67

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.2 bits (89), Expect = 6e-05
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 12/59 (20%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN--WWQARKDNVAGSAGLIPS 124
             A +++   +          + F+ GD++ I+ K D    WW  R +   G  G+ P+
Sbjct: 4   AVALYSFAGEESG-------DLPFRKGDVITILKKSDSQNDWWTGRVN---GREGIFPA 52

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (87), Expect = 1e-04
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 63  ILQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLI 122
           ILQ + RA  +Y              +A   GD+++++ K +  WW  +        G I
Sbjct: 1   ILQTY-RAIADYEKTSGS-------EMALSTGDVVEVVEKSESGWWFCQMK---AKRGWI 49

Query: 123 PSPELQE 129
           P+  L+ 
Sbjct: 50  PASFLEP 56

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 8/57 (14%), Positives = 22/57 (38%), Gaps = 9/57 (15%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A +++    D+        ++   G+ L+++  + +  W   +       G +PS
Sbjct: 3   FVALYDFVASGDN-------TLSITKGEKLRVLGYNHNGEWCEAQTK--NGQGWVPS 50

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.3 bits (86), Expect = 2e-04
 Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 19/69 (27%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-----NWWQARKD-------NV 115
           V+AQ +Y   D D        +  + GD++ +I   +       W    K+        +
Sbjct: 15  VQAQHDYTATDTD-------ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKEL 67

Query: 116 AGSAGLIPS 124
               G+ P 
Sbjct: 68  EKCRGVFPE 76

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.3 bits (81), Expect = 6e-04
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
            +  + Y   DDD        I    GD + ++++D  + W    ++  G  GL+P+
Sbjct: 2   NKVLYAYVQKDDD-------EITITPGDKISLVARDTGSGWTKINNDTTGETGLVPT 51

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 9/58 (15%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 67  FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           + ++++++   +          ++    D+L+I+      WW+ R  +  G +G +P+
Sbjct: 3   YAKSKYDFVARNSS-------ELSVMKDDVLEILDDRR-QWWKVRNAS--GDSGFVPN 50

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.003
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 68  VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
             A   Y  ++ D        ++   G+ +++I K    WW  RKD      G  PS
Sbjct: 3   YVAIKAYTAVEGD-------EVSLLEGEAVEVIHKLLDGWWVIRKD---DVTGYFPS 49

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.7 bits (77), Expect = 0.003
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 68  VRAQFNYNPLDDDLIPCAQAG-IAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPS 124
           +     Y  +     P A    +    GDI+++   +  + W   ++      G  P 
Sbjct: 7   MEVFQEYYGIPPP--PGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPC 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	352
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	99.82
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	99.8
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	99.75
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.75
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.74
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	99.74
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	99.72
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	99.71
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	99.69
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.67
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.39
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.35
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.28
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.26
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.24
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.24
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.23
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.22
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.21
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.21
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.19
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.19
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.18
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.17
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.17
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.16
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.15
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.12
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.12
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.11
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.11
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.09
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.08
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.08
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.08
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.06
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.05
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.05
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.04
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.02
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.01
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.01
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	98.99
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	98.98
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.95
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	98.95
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	98.94
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	98.94
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	98.91
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	98.88
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	98.82
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	98.81
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	98.81
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	98.73
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.62
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	98.58
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.28
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	97.48
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	97.38
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	97.35
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	97.3
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.27
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	97.25
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	97.24
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	97.23
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	97.18
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	97.17
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	97.16
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	97.15
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	97.13
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	97.13
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	97.11
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	97.05
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	96.96
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	96.87
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	96.87
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	96.84
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	96.82
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	96.77
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	96.71
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	96.69
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.69
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.64
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	96.62
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	96.59
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	96.57
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	96.56
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	96.53
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.52
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.43
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.37
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	96.33
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	96.19
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	96.0
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	96.0
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	95.98
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.93
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	95.9
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	95.82
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	95.78
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	95.71
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.63
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	95.61
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.59
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	95.49
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	95.44
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.4
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	95.31
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.29
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	95.21
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	95.17
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	95.15
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.07
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	95.03
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	94.88
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	94.83
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	94.8
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	94.67
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	94.55
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	94.55
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	94.51
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	94.35
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	94.31
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	94.19
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	93.94
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	93.93
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	93.92
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	93.91
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	93.79
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	93.64
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	93.6
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	93.32
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.25
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	93.08
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	93.07
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	92.76
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	92.61
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	92.52
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	92.39
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	92.27
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	92.01
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	91.95
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	91.75
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	91.47
d1nrjb_	209	Signal recognition particle receptor beta-subunit	91.17
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	90.92
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	90.76
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	90.29
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	90.24
d1j8yf2	211	GTPase domain of the signal sequence recognition p	90.23
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	90.1
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	90.06
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	90.04
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	89.92
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	89.86
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	89.64
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	89.6
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	89.58
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	89.57
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	89.54
d2awna2	232	Maltose transport protein MalK, N-terminal domain	89.54
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	89.43
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	89.28
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	89.21
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	89.17
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	89.04
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	88.99
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	88.96
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	88.9
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	88.76
d2fh5b1	207	Signal recognition particle receptor beta-subunit	88.72
d1vmaa2	213	GTPase domain of the signal recognition particle r	88.66
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	88.51
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	88.45
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	88.44
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	88.38
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	88.36
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	88.36
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	88.33
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	88.18
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	87.78
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	87.67
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	87.62
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	87.39
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	87.32
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	87.22
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	87.21
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	87.14
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	87.12
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	87.09
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	86.94
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	86.93
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	86.84
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	86.82
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	86.76
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	86.75
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	86.66
d1g2912	240	Maltose transport protein MalK, N-terminal domain	86.63
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	86.59
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	86.58
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	86.52
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	86.5
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	86.48
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	86.47
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	86.43
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	86.42
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	86.42
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	86.33
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	86.27
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	86.27
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	86.26
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	86.16
d1ls1a2	207	GTPase domain of the signal sequence recognition p	86.15
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	86.14
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	86.08
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	85.93
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	85.86
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	85.72
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	85.71
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	85.71
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	85.7
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	85.59
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	85.56
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	85.4
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	85.37
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	85.32
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	85.3
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	85.22
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	85.1
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	84.98
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	84.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	84.96
d1okkd2	207	GTPase domain of the signal recognition particle r	84.78
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	84.73
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	84.65
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	84.44
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	84.44
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	84.36
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	84.27
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	84.22
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	84.19
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	84.07
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	84.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	83.91
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	83.82
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	83.8
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	83.69
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	83.69
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	83.63
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	83.48
d2qy9a2	211	GTPase domain of the signal recognition particle r	83.44
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	83.4
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	83.2
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	83.11
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	83.06
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	82.91
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	82.83
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	82.79
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	82.73
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	82.73
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	82.7
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	82.47
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	82.36
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	82.14
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	81.91
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	81.75
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	81.74
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	81.37
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	81.3
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	81.26
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	81.1
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	80.69
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	80.38
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	80.17

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.6e-20  Score=164.78  Aligned_cols=92  Identities=61%  Similarity=1.028  Sum_probs=82.0

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  266 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~  266 (352)
                      +++||||+|||||||+||.++|++++|+.|.+++++                                            
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~--------------------------------------------   37 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH--------------------------------------------   37 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE--------------------------------------------
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCCcCeeecccc--------------------------------------------
Confidence            678999999999999999999999999999999999                                            


Q ss_pred             HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793        267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH  341 (352)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  341 (352)
                                                  |||+||++|.||.+|||||.++|+.++++++||||++...     +..++..
T Consensus        38 ----------------------------TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~YGt~~~~i~~   89 (178)
T d1kgda_          38 ----------------------------TTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGTKLETIRK   89 (178)
T ss_dssp             ----------------------------ECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHH
T ss_pred             ----------------------------ccCCCCCccccCccceeeehhhhhhheecCceEEEeeecccceeeeeecccc
Confidence                                        9999999999999999999999999999999999987644     3468888


Q ss_pred             HHHcCcccc
Q psy12793        342 IVSCRKLVV  350 (352)
Q Consensus       342 ~~~~~~~~~  350 (352)
                      ++..|+++|
T Consensus        90 ~~~~g~~~i   98 (178)
T d1kgda_          90 IHEQGLIAI   98 (178)
T ss_dssp             HHHTTCEEE
T ss_pred             hhccCceEE
Confidence            999998775

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=5.8e-20  Score=165.09  Aligned_cols=91  Identities=23%  Similarity=0.428  Sum_probs=83.8

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCC-CccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHH
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPD-KYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  266 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~-~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~  266 (352)
                      +++|||+|||||||+||.++|++.+|. .|.+++++                                            
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~--------------------------------------------   37 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSH--------------------------------------------   37 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCE--------------------------------------------
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEE--------------------------------------------
Confidence            689999999999999999999999996 58888999                                            


Q ss_pred             HHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHH
Q psy12793        267 ACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRH  341 (352)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  341 (352)
                                                  |||+||++|.||.+|||||.++|+.++++|+||||++...     +..+++.
T Consensus        38 ----------------------------TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YGt~~~~v~~   89 (205)
T d1s96a_          38 ----------------------------TTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQ   89 (205)
T ss_dssp             ----------------------------ECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHH
T ss_pred             ----------------------------eccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceeccccchHHH
Confidence                                        9999999999999999999999999999999999998765     3477889


Q ss_pred             HHHcCcccc
Q psy12793        342 IVSCRKLVV  350 (352)
Q Consensus       342 ~~~~~~~~~  350 (352)
                      ++..|+.||
T Consensus        90 ~~~~g~~~i   98 (205)
T d1s96a_          90 VLATGVDVF   98 (205)
T ss_dssp             HHTTTCEEE
T ss_pred             HHhcCCcee
Confidence            999998876

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=4.4e-19  Score=151.21  Aligned_cols=68  Identities=29%  Similarity=0.528  Sum_probs=62.0

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHh
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  132 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~  132 (352)
                      .++|||+|||+|..|+.+||++.+|+|++||||+|+++.|.+||+||.++..+..|||||+++.+.++
T Consensus        23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~lE~~r   90 (136)
T d1vyua1          23 AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIR   90 (136)
T ss_dssp             CEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHHHHHH
T ss_pred             eEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHHHhhhh
Confidence            36899999999999999999999999999999999999999999999987778899999998665443

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=7.2e-19  Score=150.80  Aligned_cols=68  Identities=26%  Similarity=0.468  Sum_probs=62.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHhh
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA  133 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~a  133 (352)
                      ++|||+|||+|..|+.+||++++|+|++||||+|+++.|++||+||+.+.+++.|||||+++.+....
T Consensus        24 f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~e~~~~   91 (145)
T d1vyva1          24 FAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRI   91 (145)
T ss_dssp             EEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHHHHHHH
T ss_pred             EEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhhhcccc
Confidence            48999999999999999999999999999999999999999999998776889999999987765544

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.74  E-value=8.8e-19  Score=141.18  Aligned_cols=69  Identities=28%  Similarity=0.514  Sum_probs=62.4

Q ss_pred             eeeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHHHHh
Q psy12793         64 LQIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRT  132 (352)
Q Consensus        64 lqi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e~r~  132 (352)
                      ...++||+|||+|..|+.+||++++|+|++||||.|+++.|++||+++..+.+++.|||||+++.+...
T Consensus        20 ~~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~~e~~~   88 (96)
T d1t0ha_          20 VAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMR   88 (96)
T ss_dssp             CCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHHHHHH
T ss_pred             ccEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHHHHHHh
Confidence            446899999999999999999999999999999999999999999999887778999999998665443

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=1.9e-18  Score=151.07  Aligned_cols=91  Identities=31%  Similarity=0.603  Sum_probs=82.4

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHH
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA  267 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~  267 (352)
                      .|||||+|||||||+||.++|++++|+.|.+++++                                             
T Consensus         1 ~rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~---------------------------------------------   35 (186)
T d1gkya_           1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSS---------------------------------------------   35 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEE---------------------------------------------
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhCCcceeEEEee---------------------------------------------
Confidence            37999999999999999999999999999999999                                             


Q ss_pred             HhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHHH
Q psy12793        268 CSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRHI  342 (352)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  342 (352)
                                                 |||+||++|.+|.+|||||.++|+.++++++|+||++...     ....+..+
T Consensus        36 ---------------------------TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~~~i~~~   88 (186)
T d1gkya_          36 ---------------------------TTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTVASVKQV   88 (186)
T ss_dssp             ---------------------------ECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHH
T ss_pred             ---------------------------ccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecchhhHHHH
Confidence                                       9999999999999999999999999999999999987644     34667788


Q ss_pred             HHcCcccc
Q psy12793        343 VSCRKLVV  350 (352)
Q Consensus       343 ~~~~~~~~  350 (352)
                      +..|+.+|
T Consensus        89 ~~~g~~~i   96 (186)
T d1gkya_          89 SKSGKTCI   96 (186)
T ss_dssp             HHHTSEEE
T ss_pred             hcCCCeEE
Confidence            88887664

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=4.6e-18  Score=149.53  Aligned_cols=90  Identities=29%  Similarity=0.599  Sum_probs=83.2

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHH
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTAC  268 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~  268 (352)
                      |||||+|||||||+||.++|++.+|..|.+++++                                              
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~----------------------------------------------   34 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSH----------------------------------------------   34 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCE----------------------------------------------
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCCceeEEEEE----------------------------------------------
Confidence            6899999999999999999999999999999999                                              


Q ss_pred             hhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-----ChhhHHHHH
Q psy12793        269 STIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-----THPSQRHIV  343 (352)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  343 (352)
                                                |||+||++|.+|.+|+|||.++|+.++++++|+||++...     ...+++.++
T Consensus        35 --------------------------TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~~~~v~~~~   88 (190)
T d1lvga_          35 --------------------------TTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKEAVRAVQ   88 (190)
T ss_dssp             --------------------------ECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEHHHHHHHH
T ss_pred             --------------------------eccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecccchhhhhh
Confidence                                      9999999999999999999999999999999999998655     456788888


Q ss_pred             HcCcccc
Q psy12793        344 SCRKLVV  350 (352)
Q Consensus       344 ~~~~~~~  350 (352)
                      ..|+.++
T Consensus        89 ~~g~~~~   95 (190)
T d1lvga_          89 AMNRICV   95 (190)
T ss_dssp             HTTCEEE
T ss_pred             cCCCcee
Confidence            8888765

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=1.2e-17  Score=148.93  Aligned_cols=96  Identities=30%  Similarity=0.553  Sum_probs=86.7

Q ss_pred             eEeccCCCCcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        180 VVKLPSFKRKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       180 V~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      |+++.....|||||+||+   |+++.++|++++|+.|.+++++                                     
T Consensus         1 v~~~~~~~~Rpivi~Gp~---K~ti~~~L~~~~p~~f~~~is~-------------------------------------   40 (199)
T d1kjwa2           1 VTQMEVHYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPH-------------------------------------   40 (199)
T ss_dssp             EEEEECCSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCE-------------------------------------
T ss_pred             CccccCCCCCCEEEECcC---HHHHHHHHHHhCccceeecccc-------------------------------------
Confidence            667777789999999994   9999999999999999999999                                     


Q ss_pred             hHHHHHHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEe-cHHHHHHHHHcCcEEEEEeecc----
Q psy12793        260 ELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFI-SHDEMMSDIAANQYLEYGKSIL----  334 (352)
Q Consensus       260 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~----  334 (352)
                                                         |||+||++|.||.+|||| +.++|+.+|++++||||++...    
T Consensus        41 -----------------------------------TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~~YG   85 (199)
T d1kjwa2          41 -----------------------------------TTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLYG   85 (199)
T ss_dssp             -----------------------------------ECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEEE
T ss_pred             -----------------------------------cccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCCccc
Confidence                                               999999999999999999 7889999999999999988654    


Q ss_pred             -ChhhHHHHHHcCcccc
Q psy12793        335 -THPSQRHIVSCRKLVV  350 (352)
Q Consensus       335 -~~~~~~~~~~~~~~~~  350 (352)
                       +..+++.++..|+.+|
T Consensus        86 t~~~~i~~~~~~gk~~l  102 (199)
T d1kjwa2          86 TSVQSVREVAEQGKHCI  102 (199)
T ss_dssp             EEHHHHHHHHHTTCEEE
T ss_pred             eeeeEEEehhcCCCccc
Confidence             2478888999998775

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=3.4e-17  Score=141.74  Aligned_cols=90  Identities=26%  Similarity=0.408  Sum_probs=80.6

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCCccccccccccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHH
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDKYAYPVPQFITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTA  267 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F~~~v~~~~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~  267 (352)
                      +++|||+|||||||+||.++|.+.+|. |.+++++                                             
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~~~~---------------------------------------------   35 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSA---------------------------------------------   35 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCE---------------------------------------------
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCCC-CeEEEEe---------------------------------------------
Confidence            689999999999999999999999997 6688999                                             


Q ss_pred             HhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcEEEEEeecc-------ChhhHH
Q psy12793        268 CSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQYLEYGKSIL-------THPSQR  340 (352)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  340 (352)
                                                 |||+||++|.||.+|||+|.++|+.++.++.|+||++...       ...+++
T Consensus        36 ---------------------------tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g~~~~~~~   88 (182)
T d1znwa1          36 ---------------------------TTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVR   88 (182)
T ss_dssp             ---------------------------ESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHH
T ss_pred             ---------------------------eccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCccccccccchhh
Confidence                                       9999999999999999999999999999999999998654       235677


Q ss_pred             HHHHcCcccc
Q psy12793        341 HIVSCRKLVV  350 (352)
Q Consensus       341 ~~~~~~~~~~  350 (352)
                      .++..|+.++
T Consensus        89 ~~~~~g~~~i   98 (182)
T d1znwa1          89 AAAATGVPVL   98 (182)
T ss_dssp             HHHHHTCCEE
T ss_pred             hhhhcCCccc
Confidence            8888887664

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=2e-17  Score=131.92  Aligned_cols=67  Identities=33%  Similarity=0.668  Sum_probs=58.7

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcC---CCCceeeecCChhHHHHhhh
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDN---VAGSAGLIPSPELQEWRTAC  134 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~---~~g~~GlIPS~~v~e~r~a~  134 (352)
                      +||||||||+|..|+.+||.  +|+|++||||+|+++.|++||+|+..+   .+++.|+||+||+++.+...
T Consensus         2 ~~vrAlydy~~~~d~~~~~~--eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~~~~~   71 (96)
T d1kjwa1           2 FYIRALFDYDKTKDCGFLSQ--ALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWS   71 (96)
T ss_dssp             EEEEESSCBCHHHHHCCCSS--BCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHHHHT
T ss_pred             EEEEEcccCcCCcCCCCCCc--cceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeeehhhh
Confidence            68999999999988877775  699999999999999999999999864   26789999999998866554

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=1.2e-13  Score=100.36  Aligned_cols=54  Identities=39%  Similarity=0.885  Sum_probs=48.6

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|+|||.+..++       +|+|++||+|.|+++.+++||+++.  .+++.|+||++|+++
T Consensus         3 ~v~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~--~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           3 YVRALFDFNGNDEE-------DLPFKKGDILRIRDKPEEQWWNAED--SEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEEC--TTSCEEEEEGGGEEC
T ss_pred             EEEECCCCCcCCcC-------CcCCCCCCEEEEEEEcCCCeEEEEE--CCCCEEEEcHHHeEE
Confidence            78999999998865       6999999999999999999999983  467899999999875

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.35  E-value=2.7e-13  Score=97.13  Aligned_cols=52  Identities=23%  Similarity=0.559  Sum_probs=46.7

Q ss_pred             eeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      |.|+|||.+..++       +|+|++||+|.|+++.+++||.++  +.+++.|+||++|++
T Consensus         1 V~Alydy~a~~~~-------eLs~~~Gd~~~vl~~~~~~Ww~~~--~~~g~~G~vP~~yv~   52 (53)
T d2rn8a1           1 VIALYDYQTNDPQ-------ELALRCDEEYYLLDSSEIHWWRVQ--DKNGHEGYAPSSYLV   52 (53)
T ss_dssp             EEESSCCCCSSTT-------BCCCCTTCEEEECCCSCSSCEEEE--CTTSCEEEECGGGEE
T ss_pred             CEEeeeECCCCCC-------eeeECCCCEEEEeEEcCCCeEEEE--eCCCCEEEEeHHHEe
Confidence            5799999998765       699999999999999999999997  357889999999985

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.1e-12  Score=94.86  Aligned_cols=54  Identities=28%  Similarity=0.796  Sum_probs=48.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .|+||+|||.+.+++       +|+|++||+|.|+++.+++||.++.   +++.|+||++|+++
T Consensus         2 tyv~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv~~   55 (56)
T d1gcqa_           2 TYVQALFDFDPQEDG-------ELGFRRGDFIHVMDNSDPNWWKGAC---HGQTGMFPRNYVTP   55 (56)
T ss_dssp             EEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEEECcCCCcCCcC-------CcCCCCCCEEEEEEecCCCEEEEEE---CCeEEEEEHhHEEE
Confidence            378999999998765       6999999999999999999999985   58999999999864

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.9e-12  Score=95.47  Aligned_cols=54  Identities=28%  Similarity=0.607  Sum_probs=48.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.++.++       +|+|++||+|.|++..+++||.++.   +++.|+||++|+++
T Consensus         6 ~~v~Aly~y~a~~~~-------eLsf~~Gd~i~vl~~~~~~Ww~g~~---~g~~G~~P~~yVe~   59 (62)
T d1k4us_           6 SQVEALFSYEATQPE-------DLEFQEGDIILVLSKVNEEWLEGES---KGKVGIFPKVFVED   59 (62)
T ss_dssp             EEEECCSCBCCCSSS-------BCCBCSSCEEEEEEESSSSCEEEEC---SSCEEEECGGGCCC
T ss_pred             CEEEECCCCCCCCcC-------CcCCCCCCEEEEeEEcCCCEEEEEE---CCcEEEEchHHeEE
Confidence            357999999998865       6999999999999999999999984   58999999999875

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=2.3e-12  Score=93.64  Aligned_cols=54  Identities=28%  Similarity=0.617  Sum_probs=48.2

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      +++|+|||++..++       +|+|++||+|.|+++.+++||.++.. .+++.|+||++|++
T Consensus         2 ~~~Alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~~g~~G~~P~~yVe   55 (58)
T d1jo8a_           2 WATAEYDYDAAEDN-------ELTFVENDKIINIEFVDDDWWLGELE-KDGSKGLFPSNYVS   55 (58)
T ss_dssp             CEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEET-TTCCEEEEEGGGEE
T ss_pred             EEEEccCCCCCCcC-------CcCCCCCCEEEEEEEcCCCEEEEEEC-CCCCEEEEchHHEE
Confidence            58999999998865       69999999999999999999999863 46899999999985

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=2.3e-12  Score=93.53  Aligned_cols=53  Identities=23%  Similarity=0.747  Sum_probs=47.8

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ++||+|||.++.++       +|+|++||++.|++..+++||.++.   +++.|+||++|+++
T Consensus         3 yarAlydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~yve~   55 (57)
T d1utia_           3 WARALYDFEALEED-------ELGFRSGEVVEVLDSSNPSWWTGRL---HNKLGLFPANYVAP   55 (57)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEECcCCCCCCcC-------CcCCCCCCEEEEeEEcCCCEEEEEE---CCcEEEEEHHHEEE
Confidence            78999999998765       6999999999999999999999984   57999999999863

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.24  E-value=2.4e-12  Score=92.69  Aligned_cols=52  Identities=21%  Similarity=0.647  Sum_probs=47.0

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      +++|+|||.+..++       +|+|++||++.|+++.+++||.++.   +++.|+||++|++
T Consensus         2 ~~vAl~dy~~~~~~-------eLs~~~Gd~v~v~~~~~~~Ww~g~~---~g~~G~~P~~yv~   53 (55)
T d1u06a1           2 LVLALYDYQEKSPR-------EVTMKKGDILTLLNSTNKDWWKVEV---NDRQGFVPAAYVK   53 (55)
T ss_dssp             EEEECSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEEECCCCCCCCcC-------CccCCCCCEEEEeEEcCCCEEEEEE---CCeEEEEeHHHEE
Confidence            57899999998865       6999999999999999999999985   5789999999985

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.23  E-value=2.7e-12  Score=93.46  Aligned_cols=54  Identities=37%  Similarity=0.824  Sum_probs=48.4

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|++..+++||.++.   +++.|+||++|+++
T Consensus         3 ~~~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yvep   56 (58)
T d1sema_           3 KFVQALFDFNPQESG-------ELAFKRGDVITLINKDDPNWWEGQL---NNRRGIFPSNYVCP   56 (58)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEEEECSSSSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEEECCCCCcCCcC-------CcCCCCCCEEEEeEEcCCCEEEEEE---CCeEEEEEhhhEEE
Confidence            478999999998765       6999999999999999999999985   57899999999863

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=3.7e-12  Score=95.12  Aligned_cols=54  Identities=30%  Similarity=0.639  Sum_probs=48.2

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|+|||.+..++       +|+|++||+|.|+++.+.+||.++  +.+++.|+||++|+++
T Consensus         4 ~v~Alydf~a~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~--~~~g~~G~~P~~yV~~   57 (67)
T d1gl5a_           4 IVVAMYDFQATEAH-------DLRLERGQEYIILEKNDLHWWRAR--DKYGSEGYIPSNYVTG   57 (67)
T ss_dssp             CEEECSCBCCSSSS-------BCCBCTTCEEEEEECSSSSEEEEE--CSSSCEEEEETTSEES
T ss_pred             EEEECCCCCCCCcC-------CcCCCCCCEEEEEEecCCCcEEEE--ECCCCEEEEEhHHeEE
Confidence            68999999998865       699999999999999999999998  3467899999999864

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=4.2e-12  Score=92.44  Aligned_cols=52  Identities=29%  Similarity=0.769  Sum_probs=46.9

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      -++|+|||.+..++       +|+|++||+|.|+++.+++||.++.   +++.|+||++|++
T Consensus         4 r~~Alydy~~~~~~-------eLsf~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yV~   55 (58)
T d1uj0a_           4 RVRALYDFEAVEDN-------ELTFKHGELITVLDDSDANWWQGEN---HRGTGLFPSNFVT   55 (58)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEEECCCCCCCCcC-------CcCCCCCCEEEEeEEeCCCEEEEEE---CCeEEEEehHhEe
Confidence            57999999998765       6999999999999999999999985   5789999999986

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.4e-12  Score=93.31  Aligned_cols=54  Identities=24%  Similarity=0.538  Sum_probs=47.6

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+||+|||++..++       +|+|++||+|.|++..+++||.++.. .+++.|+||++|++
T Consensus         5 ~~rAl~df~~~~~~-------eLs~~~Gd~i~v~~~~~~~W~~~~~~-~~g~~G~vP~nyve   58 (60)
T d1arka_           5 IFRAMYDYMAADAD-------EVSFKDGDAIINVQAIDEGWMYGTVQ-RTGRTGMLPANYVE   58 (60)
T ss_dssp             CEECCSCCCCSSSS-------BCCCCTTCEECCSEECSSSEEEEECT-TTCCEEEEETTTCE
T ss_pred             EEEECccCCCCCCC-------CcCCCCCCEEEEEEEcCCCEEEEEEC-CCCCEEEEcHHHEE
Confidence            56999999998765       69999999999999999999999852 36889999999985

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.19  E-value=4.4e-12  Score=94.82  Aligned_cols=55  Identities=33%  Similarity=0.774  Sum_probs=46.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC-----CCceEEEEcCCCCceeeecCChhH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-----HNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D-----~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+++|+|||.|++++      .+|+|++||+|+|+++.|     ++||.++  +.+|+.|+||++|++
T Consensus         6 ~~~~Alydy~~~~~~------~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~--~~~G~~G~~P~nyve   65 (67)
T d2v1ra1           6 EFARALYDFVPENPE------MEVALKKGDLMAILSKKDPLGRDSDWWKVR--TKNGNIGYIPYNYIE   65 (67)
T ss_dssp             EEEEESSCBCCSSTT------TBCCBCTTCEEEEEEEECTTSCEEEEEEEE--CTTSCEEEEEGGGEE
T ss_pred             EEEEECccCCCCCCC------CEeCCCCCCEEEEEEeecCCCcCCCeEEEE--eCCCCEEEEEHHHEE
Confidence            378999999997643      369999999999998865     4799998  346899999999985

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=7.1e-12  Score=90.39  Aligned_cols=53  Identities=30%  Similarity=0.748  Sum_probs=46.7

Q ss_pred             eeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      ++|+|||+++.++       +|+|++||+|.|+++++++||.++.. .+++.|+||++|++
T Consensus         3 ~vAl~dy~a~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~~g~~G~vP~~yv~   55 (57)
T d1efna_           3 FVALYDYEAITED-------DLSFHKGEKFQILNSSEGDWWEARSL-TTGETGYIPSNYVA   55 (57)
T ss_dssp             EEESSCBCCSSTT-------BCCBCTTCEEEEEECSSCSEEEEEET-TTTEEEEEEGGGEE
T ss_pred             EEECCCCCCCCcC-------CcCCCCCCEEEEEEecCCCCEEEEEC-CCCCEEEEeHHHeE
Confidence            4599999998765       69999999999999999999999863 36899999999985

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=7.3e-12  Score=91.32  Aligned_cols=54  Identities=19%  Similarity=0.650  Sum_probs=46.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      -+++|+|||.+..++       +|+|++||+|.|++..+ +||.++.  .+++.|+||++|++.
T Consensus         2 ~~a~alydf~a~~~~-------ELs~~~Gd~i~v~~~~~-~ww~~~~--~~g~~G~~P~nyve~   55 (59)
T d1i07a_           2 KYAKSKYDFVARNSS-------ELSVMKDDVLEILDDRR-QWWKVRN--ASGDSGFVPNNILDI   55 (59)
T ss_dssp             CEEEESSCBCCSSTT-------BCCBCTTCEEEECGGGC-CEEEEEC--TTSCEEEEEGGGEEE
T ss_pred             eEEEEccCCCCCCCC-------eeeEcCCCEEEEEEEcC-CcEEEEE--cCCCEEEECHHHeEE
Confidence            378999999999875       69999999999998765 7999984  467999999999863

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9.2e-12  Score=95.09  Aligned_cols=55  Identities=29%  Similarity=0.706  Sum_probs=49.0

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ++++||+|||.+..++       +|+|++||+|.|+++.+++||.++.   +++.|+||++|++.
T Consensus        10 ~~~~rAlydy~a~~~~-------eLs~~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~~yv~~   64 (76)
T d1ujya_          10 QLIVKARFNFKQTNED-------ELSVCKGDIIYVTRVEEGGWWEGTL---NGRTGWFPSNYVRE   64 (76)
T ss_dssp             CEEEECCSCBCCSSTT-------SCCBCSSCCEEESSCCSSSCEEEEE---TTEEEEECTTTSEE
T ss_pred             CEEEEECccCCCCCCC-------CccCCCCCEEEEeEEcCCCEEEEEE---CCcEEEEchHHEEE
Confidence            3578999999998765       6999999999999999999999984   47899999999975

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=7.7e-12  Score=90.82  Aligned_cols=53  Identities=25%  Similarity=0.583  Sum_probs=46.9

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||++.|+.+.+.+||.++.   +++.|+||++|++.
T Consensus         4 ~~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~~Ww~~~~---~g~~G~~P~~yve~   56 (58)
T d1ng2a1           4 TYRAIADYEKTSGS-------EMALSTGDVVEVVEKSESGWWFCQM---KAKRGWIPASFLEP   56 (58)
T ss_dssp             EEECSSCBCCSSTT-------CCCBCTTCEEEEEECCTTSCCEEEE---CCCCCCCCGGGCCC
T ss_pred             EEEECccCcCCCCC-------CcCCCCCCEEEEEEecCCCeEEEEE---CCCCcEEcHhHEEE
Confidence            45899999998765       6999999999999999999999985   47889999999864

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.16  E-value=1.3e-11  Score=93.64  Aligned_cols=57  Identities=16%  Similarity=0.335  Sum_probs=49.4

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCC---CCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNV---AGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~---~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|+|+++.+.+||.++....   +++.|+||++|++.
T Consensus         8 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~   67 (74)
T d1wfwa_           8 STMTVIKDYYALKEN-------EICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP   67 (74)
T ss_dssp             CEEECCSCBCCCSSS-------CCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCB
T ss_pred             CEEEEeEEECCCCCC-------CccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEE
Confidence            367899999998765       6999999999999999999999997542   57899999999864

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.15  E-value=1.3e-11  Score=88.72  Aligned_cols=54  Identities=24%  Similarity=0.585  Sum_probs=44.4

Q ss_pred             eeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .||||||.+..++       +|+|++||+|.|++..+.+||.......+++.|+||++|++
T Consensus         2 aralydf~a~~~~-------ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~nyve   55 (56)
T d1zuua1           2 NKVLYAYVQKDDD-------EITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR   55 (56)
T ss_dssp             CEECSCBCCCSTT-------BCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CEEeeeeCCCCCC-------EeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEehhhEE
Confidence            5899999998865       69999999999999888776544333447899999999974

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.7e-11  Score=92.85  Aligned_cols=57  Identities=16%  Similarity=0.435  Sum_probs=49.5

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcC--CCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDN--VAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~--~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|.|+++.+++||.++..+  ..++.|+||++|++.
T Consensus         8 ~~~~al~~y~~~~~~-------eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~   66 (80)
T d1ue9a_           8 EIAQVTSAYVASGSE-------QLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL   66 (80)
T ss_dssp             EEEEECSCCCCCSTT-------BCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEE
T ss_pred             CEEEECcCCCCCCCC-------EeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEE
Confidence            368999999999875       699999999999999999999998643  367799999999864

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=5.5e-12  Score=94.17  Aligned_cols=54  Identities=31%  Similarity=0.684  Sum_probs=47.7

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.++.++       +|+|++||+|.|+++.+.+||.++  ..+++.|+||++|+++
T Consensus        10 ~v~Alydy~a~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~--~~~g~~G~vP~~yv~~   63 (67)
T d1awwa_          10 KVVALYDYMPMNAN-------DLQLRKGDEYFILEESNLPWWRAR--DKNGQEGYIPSNYVTE   63 (67)
T ss_dssp             EEEBSSCCCCSSSS-------SCCCCSSCEEECCCCCSSSEECCB--CTTSCBCCEETTTBCC
T ss_pred             EEEECcCCCCCCcC-------CcCCCCCCEEEEEEEcCCCeEEEE--ECCCCEEEEcHHHeEE
Confidence            57899999999865       699999999999999999999987  3468899999999864

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.5e-11  Score=85.97  Aligned_cols=50  Identities=30%  Similarity=0.542  Sum_probs=45.1

Q ss_pred             eeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhH
Q psy12793         69 RAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        69 RAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .|+++|.+..++       +|+|++||++.|+++.+++||.++.   +++.|++|++|++
T Consensus         4 val~~y~a~~~~-------eLs~~~Gd~v~vl~~~~~gWw~g~~---~g~~G~~P~~yve   53 (53)
T d1wlpb1           4 VAIKAYTAVEGD-------EVSLLEGEAVEVIHKLLDGWWVIRK---DDVTGYFPSMYLQ   53 (53)
T ss_dssp             EECSCBCCCSSS-------BCCBCTTCEEEEEECCTTSSEEEES---SSCEEEECSTTEE
T ss_pred             EEeeeECCCCCC-------EecCCCCCEEEEEeecCCceEEEEE---CCcEeEecHHhCC
Confidence            599999999876       6999999999999999999999983   5789999999974

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.2e-11  Score=89.95  Aligned_cols=52  Identities=33%  Similarity=0.745  Sum_probs=44.8

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCC---CceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH---NWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~---~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .++|+|||.+++++       +|+|++||+|.|+++.|+   +||.++.   +++.|+||++|++
T Consensus         6 ~v~Alydy~a~~~~-------ELs~~~Gd~i~vl~~~~~~~~gW~~g~~---~g~~G~~P~~yv~   60 (63)
T d1ycsb2           6 VIYALWDYEPQNDD-------ELPMKEGDCMTIIHREDEDEIEWWWARL---NDKEGYVPRNLLG   60 (63)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCSSCEEEECCCCTTSCSSEEEEEE---TTEEEEEEGGGEE
T ss_pred             EEEEeeCCCCCCCC-------CcCCCCCCEEEEEEecCCCCCCEEEEEE---CCeEEEEchHHhE
Confidence            47799999998865       699999999999987654   5999984   5789999999985

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.2e-11  Score=98.38  Aligned_cols=53  Identities=32%  Similarity=0.746  Sum_probs=47.5

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|||||+++.++       +|+|++||+|.|+++.|++||.++.   +++.|+||++|++.
T Consensus        36 ~~~Alydy~a~~~~-------ELsf~~Gd~i~Vl~~~~~gWw~g~~---~g~~G~~P~nyVe~   88 (98)
T d1udla_          36 QVIAMYDYAANNED-------ELSFSKGQLINVMNKDDPDWWQGEI---NGVTGLFPSNYVKM   88 (98)
T ss_dssp             EEEESSCCCCSSTT-------SCCCCTTCEEEECBCCSSSEEBCBS---SSCBCCEETTSEEE
T ss_pred             EEEEccCCCCCCCC-------EeeEcCCCEEEEeEecCCCeEEEEE---CCeEEEEchHHEEE
Confidence            57999999998875       6999999999999999999999973   57899999999864

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.1e-11  Score=88.60  Aligned_cols=56  Identities=29%  Similarity=0.671  Sum_probs=46.9

Q ss_pred             eeeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         65 QIFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        65 qi~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..+++|+|||.+..++       +|+|++||+|.|++.+ ++||.++.. .+++.|+||++|++.
T Consensus         4 ~~~vvAlydy~~~~~~-------eLs~~~Gd~i~v~~~~-~~ww~~~~~-~~g~~G~vP~~yv~~   59 (65)
T d1qcfa1           4 RIIVVALYDYEAIHHE-------DLSFQKGDQMVVLEES-GEWWKARSL-ATRKEGYIPSNYVAR   59 (65)
T ss_dssp             CCEEEESSCBCCCSTT-------BCCBCTTCEEEEEECC-TTEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             cEEEEECCcCCCCCcC-------ccCCCCCCEEEEEEEC-CCCEEEEEc-cCCCEEEEchHHeEE
Confidence            4578999999998765       6999999999999864 578888753 367899999999874

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1e-11  Score=93.74  Aligned_cols=55  Identities=25%  Similarity=0.497  Sum_probs=47.3

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ..++|+|||.+..++       +|+|++||+|.|+++.+++||.++.  ..+..|+||++|+++
T Consensus         7 ~~v~Aly~f~a~~~~-------eLsf~~Gd~i~v~~~~~~~Ww~g~~--~~~~~G~fP~~yv~~   61 (71)
T d2hspa_           7 CAVKALFDYKAQRED-------ELTFIKSAIIQNVEKQEGGWWRGDY--GGKKQLWFPSNYVEE   61 (71)
T ss_dssp             SCEECCSCCCCSSSS-------SCCCCTTCEEBSCCCBTTTEECCBC--SSCCSCCEETTTCCS
T ss_pred             EEEEEcccCCcCCcC-------CccCCCCCEEEEEEecCCCEEEEEE--CCeEEEEEchHHeEE
Confidence            568999999998765       6999999999999999999999873  345568999999975

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.2e-11  Score=95.55  Aligned_cols=62  Identities=23%  Similarity=0.438  Sum_probs=48.2

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCC-ceEEEEcCCCCceeeecCChhHHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN-WWQARKDNVAGSAGLIPSPELQEW  130 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~-WWqaR~~~~~g~~GlIPS~~v~e~  130 (352)
                      .+++|+|||+|.+. ..++.+.+|+|++||+|.|++..|++ ||.++.  .+++.|+||++|+++.
T Consensus        18 ~~~~Alydy~~~~~-~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~--~~G~~G~~P~nyve~~   80 (96)
T d1wiea_          18 HLCVARYSYNPFDG-PNENPEAELPLTAGKYLYVYGDMDEDGFYEGEL--LDGQRGLVPSNFVDFV   80 (96)
T ss_dssp             EEEEESSCCCGGGS-SCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEE--TTCCBCBCCTTSEECC
T ss_pred             eEEEEeeeecCccc-CCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEe--CCCCEEEEehHHeEEC
Confidence            46789999998642 34555678999999999999887766 555543  3578999999999753

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=4.7e-11  Score=88.08  Aligned_cols=54  Identities=28%  Similarity=0.636  Sum_probs=47.5

Q ss_pred             eeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+|+|||.+..++       +|+|++||+|+|+++.+++||.++.. ..++.|+||++|++.
T Consensus         5 ~vAlydf~~~~~~-------eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~~g~~G~vP~~yv~~   58 (64)
T d1fmka1           5 FVALYDYESRTET-------DLSFKKGERLQIVNNTEGDWWLAHSL-STGQTGYIPSNYVAP   58 (64)
T ss_dssp             EEESSCBCCCSSS-------BCCBCTTCEEEESCCCSSSEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             EEECccCCCcCcC-------CcCCCCCCEEEEEEEcCCCcEEEEEC-CCCCEEEEehHHeEE
Confidence            3799999999865       69999999999999999999999864 367899999999864

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.1e-11  Score=89.75  Aligned_cols=55  Identities=22%  Similarity=0.678  Sum_probs=46.8

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.++.++       +|+|++||+|.|++..  +++||.++.  .+|+.|+||++|++.
T Consensus         7 ~~~~Alydf~~~~~~-------eLs~~~Gd~i~vl~~~~~~~~Ww~~~~--~~G~~G~vP~~yv~~   63 (71)
T d1u5sa1           7 HVVQTLYPFSSVTEE-------ELNFEKGETMEVIEKPENDPEWWKCKN--ARGQVGLVPKNYVVV   63 (71)
T ss_dssp             SEEEESSCCCCCSSS-------BCCCCSSCCEEEEECCCTTTCEEEEEE--TTTEEEEEETTSEEE
T ss_pred             EEEEECccCCCCCCC-------EeeECCCCEEEEEEcccCCCCeEEEEE--CCCCEEEEChHHEEE
Confidence            468999999998865       6999999999999864  357999984  358999999999864

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=5.8e-11  Score=89.35  Aligned_cols=54  Identities=30%  Similarity=0.654  Sum_probs=45.4

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||+|.|+++. +..||.++.  ..++.|+||++|+++
T Consensus         8 ~~~Alydy~a~~~~-------ELs~~~Gd~i~vl~~~~~~~W~~~~~--~~g~~G~~P~~yve~   62 (71)
T d1k9aa1           8 ECIAKYNFHGTAEQ-------DLPFCKGDVLTIVAVTKDPNWYKAKN--KVGREGIIPANYVQK   62 (71)
T ss_dssp             EEEESSCBCCSSSS-------BCCBCTTCEEEEEEECSSTTEEEEEC--TTCCEEEEEGGGEEE
T ss_pred             EEEEccCCCCCCCC-------CccCCCCCEEEEeEeccCCCEEEEEe--CCCCEEEEchHHeEE
Confidence            47899999998765       6999999999999875 556888873  468899999999975

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=7.2e-11  Score=89.18  Aligned_cols=56  Identities=18%  Similarity=0.400  Sum_probs=44.8

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCC-CceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDH-NWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~-~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+||+|||.+..+.      .+|+|++||+|.|+...++ .||.++. +..++.|+||++|++.
T Consensus         9 ~~~Alydy~~~~~~------deLsf~~Gd~i~vl~~~~~~gW~~g~~-~~~g~~G~fP~nyVe~   65 (72)
T d1spka_           9 KVKTIFPHTAGNNK------TLLSFAQGDVLTLLIPEEKDGWLYGEH-DTTKARGWFPSSYTKL   65 (72)
T ss_dssp             EEECSSCBCCSSCS------SBCCBCTTCEEEECCSSCBTTEEEEEE-TTTCCEEEEEGGGCEE
T ss_pred             EEEEeeccCCCCCC------CEeeEcCCCEEEEEEeecCCCeEEEEE-CCCCCEEEEchhhEEE
Confidence            57999999986543      2699999999999977654 5777775 3468899999999964

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=8.7e-11  Score=84.96  Aligned_cols=53  Identities=17%  Similarity=0.477  Sum_probs=43.6

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCC-ceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN-WWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~-WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ++.|+|||.+..++       +|+|++||++.|+++.+++ ||.++.   .++.|+||++|++.
T Consensus         2 ~~vAlydy~a~~~~-------eLs~~~Gd~i~vl~~~~~~~W~~~~~---~g~~G~~P~~yv~~   55 (57)
T d1opka1           2 LFVALYDFVASGDN-------TLSITKGEKLRVLGYNHNGEWCEAQT---KNGQGWVPSNYITP   55 (57)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEEECTTSSEEEEEC---SSCEEEEEGGGEEE
T ss_pred             EEEECccCCCCCcC-------CcCCCCCCEEEEeEecCCCCEEEEEE---CCCEeEEchhheEE
Confidence            35899999998865       6999999999999887655 666763   56889999999863

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=8.8e-11  Score=85.97  Aligned_cols=55  Identities=29%  Similarity=0.648  Sum_probs=45.6

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+++|+|||.+..++       +|+|++||+|+|+++.+ +||.++.. .+++.|+||++|+++
T Consensus         7 ~~~~al~dy~a~~~~-------eLs~~~Gd~i~v~~~~~-~ww~~~~~-~~g~~G~~P~~yV~~   61 (62)
T d2iima1           7 NLVIALHSYEPSHDG-------DLGFEKGEQLRILEQSG-EWWKAQSL-TTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEECCS-SEEEEEET-TTCCEEEEEGGGEEE
T ss_pred             cEEEECCCCCcCCcC-------CcCCCCCCEEEEeEEcC-CCEEEEec-cCCeEeEEcHHHEEe
Confidence            368899999998865       69999999999999876 57777643 368999999999863

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1e-10  Score=91.50  Aligned_cols=53  Identities=25%  Similarity=0.495  Sum_probs=44.6

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeecc--CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD--DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~--D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+||+|||.+..++       +|+|++||+|+|+.+.  +..||.++.   +++.|+||++|++.
T Consensus         7 ~~rAlydy~~~~~~-------ELs~~~Gd~v~Vl~~~~~~~~w~~~~~---~g~~G~~P~~Yve~   61 (93)
T d1uffa_           7 GYRALYPFEARNHD-------EMSFNSGDIIQVDEKTVGEPGWLYGSF---QGNFGWFPCNYVEK   61 (93)
T ss_dssp             CEEESSCBCCCSSS-------CCCBCTTCEEEECSSCCCSSSEEEEEE---TTEEEEEETTTEEE
T ss_pred             EEEECccCCCCCCC-------CccCcCCCEEEEEEeccCCCCEEEEEe---CCcEEEEchHHEEE
Confidence            56999999999865       6999999999999876  445777763   68899999999974

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.1e-10  Score=88.74  Aligned_cols=53  Identities=21%  Similarity=0.533  Sum_probs=46.1

Q ss_pred             eeeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         66 IFVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        66 i~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +.+||+|||.+..++       +|+|++||+|+|++++ ++||.++.   +++.|+||++|++.
T Consensus        11 ~~~~alydy~a~~~~-------ELs~~~Gd~i~vl~~~-~~ww~g~~---~g~~G~fP~~yve~   63 (74)
T d1j3ta_          11 LKAQALCSWTAKKDN-------HLNFSKHDIITVLEQQ-ENWWFGEV---HGGRGWFPKSYVKI   63 (74)
T ss_dssp             CEEEESSCBCCCSTT-------BCCBCTTCEEEEEEEC-SSEEEEES---TTCCCEEEGGGEEE
T ss_pred             eEEEEccCCCCCCCC-------EecCCCCCEEEEEEcc-CCeEEEEE---CCcEEEEchhhEEE
Confidence            468999999999875       6999999999999874 58998873   58899999999874

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.3e-10  Score=94.75  Aligned_cols=53  Identities=28%  Similarity=0.488  Sum_probs=47.0

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||+|.|+++.+++||.++.   +++.|+||++|++.
T Consensus        16 ~~~alydy~a~~~d-------ELs~~~Gd~i~Vl~~~~~gWw~g~~---~g~~G~~P~~yv~~   68 (118)
T d1ng2a2          16 PYVAIKAYTAVEGD-------EVSLLEGEAVEVIHKLLDGWWVIRK---DDVTGYFPSMYLQK   68 (118)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCTTSEEEEEE---TTEEEEEEGGGEEE
T ss_pred             EEEECcCCCCCCCC-------EecCCCCCEEEEeEecCCCeEEEEE---CCeEEEEehhhEEE
Confidence            34699999998766       6999999999999999999999985   57899999999964

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=2e-10  Score=83.34  Aligned_cols=52  Identities=25%  Similarity=0.691  Sum_probs=43.9

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC--CCceEEEEcCCCCceeeecCChhH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD--HNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D--~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .++|+|||.++.++       +|+|++||+|.|+++.|  ..||.++.   +++.|+||++|++
T Consensus         3 ~~~Alydy~a~~~~-------ELs~~~Gd~v~vl~~~~~~~~W~~~~~---~g~~G~vP~~yve   56 (58)
T d1oota_           3 KAVALYSFAGEESG-------DLPFRKGDVITILKKSDSQNDWWTGRV---NGREGIFPANYVE   56 (58)
T ss_dssp             EEEESSCBCCCSTT-------BCCBCTTCEEEEEECCSCTTSEEEEEE---TTEEEEEEGGGEE
T ss_pred             eEEEccCCCCCCCC-------CccCCCCCEEEEEEeecCCCCEEEEEE---CCcEEEEcHHHEE
Confidence            36899999999875       69999999999998865  35777764   5789999999985

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.7e-10  Score=86.62  Aligned_cols=52  Identities=21%  Similarity=0.538  Sum_probs=44.5

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||+|.|++.+ ++||.++.   +++.|+||++|++.
T Consensus        10 ~~vAl~~y~~~~~~-------eLs~~~Gd~v~vl~~~-~~Ww~~~~---~g~~G~vP~~yv~~   61 (69)
T d1uhfa_          10 EYIALYPYSSVEPG-------DLTFTEGEEILVTQKD-GEWWTGSI---GDRSGIFPSNYVKP   61 (69)
T ss_dssp             EEECSSCBCCSSSS-------BCCBCTTCEEEECEEE-TTEEEECS---TTCCEEECGGGCEE
T ss_pred             EEEECccCCCCCcC-------CcCCCCCCEEEEEEec-CCEEEEEE---CCcEEEEchhhEEE
Confidence            56799999998765       6999999999999875 57999873   58899999999864

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2.6e-10  Score=87.53  Aligned_cols=53  Identities=21%  Similarity=0.517  Sum_probs=45.6

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC----CCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD----HNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D----~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|||||.+..++       +|+|++||+|.|+++.|    .+||.++.   .++.|+||++|++.
T Consensus        15 ~~~Alydy~a~~~~-------ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~---~g~~G~vP~~yv~~   71 (79)
T d1uhca_          15 VYFAVYTFKARNPN-------ELSVSANQKLKILEFKDVTGNTEWWLAEV---NGKKGYVPSNYIRK   71 (79)
T ss_dssp             CEEESSCBCCCSSS-------BCCBCTTCEEEEEESCCTTSCTTEEEEES---SSCEEEEEGGGEEE
T ss_pred             EEEECccCCCCCCC-------CccCCCCCEEEEEEeecCCCCCCEEEEEE---CCCEEEEehhhEEE
Confidence            57899999998865       69999999999998753    57999983   57899999999964

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.1e-10  Score=82.58  Aligned_cols=51  Identities=31%  Similarity=0.791  Sum_probs=39.2

Q ss_pred             eeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhH
Q psy12793         68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQ  128 (352)
Q Consensus        68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~  128 (352)
                      .+|+|||.+..++       +|+|++||+|.|+++. ++.||.++.   +|+.|+||++|++
T Consensus         3 a~Alydy~a~~~~-------ELs~~~Gd~v~v~~~~~~~~W~~~~~---~g~~G~vP~nyve   54 (56)
T d1gria1           3 AIAKYDFKATADD-------ELSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPKNYIE   54 (56)
T ss_dssp             EEECSCBCCCSSS-------CCCBCTTCEEEC------CCEEEEES---SSCEEEEEGGGEE
T ss_pred             EEEeeCCCCCCCC-------CcCCCCCCEEEEEeccCCCCeEEEEE---CCcEEEEehhhEE
Confidence            5799999998865       6999999999999875 456777762   6889999999985

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.3e-10  Score=86.39  Aligned_cols=53  Identities=19%  Similarity=0.439  Sum_probs=44.5

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccCCC-ceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDDHN-WWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D~~-WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      .+||||||.+..++       +|+|++||+|.|++..+++ ||.++.   +++.|+||++|++.
T Consensus        12 ~~~alydy~~~~~~-------eLs~~~Gd~i~v~~~~~~~~W~~g~~---~g~~G~~P~~yve~   65 (72)
T d1ugva_          12 KAKALYACKAEHDS-------ELSFTAGTVFDNVHPSQEPGWLEGTL---NGKTGLIPENYVEF   65 (72)
T ss_dssp             CEEESSCBCCCSSS-------BCCBCTTCEEBSCCBCSSTTEEEEES---SSCEEEEEGGGEEE
T ss_pred             EEEEcccCCCCCCC-------EecCCCCCEEEEeeccCCCCEEEEEe---CCCEEEEchHHEEE
Confidence            57999999999865       6999999999999987665 666652   57899999999864

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4e-10  Score=91.19  Aligned_cols=56  Identities=21%  Similarity=0.345  Sum_probs=47.1

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeec---cCCCceEEEEcCC-----CCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISK---DDHNWWQARKDNV-----AGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~---~D~~WWqaR~~~~-----~g~~GlIPS~~v~e  129 (352)
                      +++|+|||.+.+.+       +|+|++||+|.|+.+   .+.+||.+...+.     +++.|+||++|+++
T Consensus        23 ~~~Alydy~~~~~~-------eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~   86 (106)
T d1i1ja_          23 MAVALQDYMAPDCR-------FLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVRE   86 (106)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEE
T ss_pred             EEEEccccCCCCCC-------CccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEE
Confidence            68999999998765       699999999999986   4578999986542     56789999999875

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=6.3e-10  Score=87.71  Aligned_cols=53  Identities=26%  Similarity=0.483  Sum_probs=46.0

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC----CCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD----HNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D----~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      +++|+|||.+..++       +|+|++||+|.|+++.|    .+||.++.   +++.|+||++|++.
T Consensus        19 ~~~a~~~f~a~~~~-------eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~---~g~~G~~P~~yv~~   75 (92)
T d1ug1a_          19 LFQAERNFNAAQDL-------DVSLLEGDLVGVIKKKDPMGSQNRWLIDN---GVTKGFVYSSFLKP   75 (92)
T ss_dssp             EEEESSCCCCCSSS-------CCCCCTTCEEEEEESCCTTSCSSEEEEEC---SSSEEEEEGGGEEE
T ss_pred             EEEEcCCcCCCCCC-------eEEEecccEEEEEEcccccccCCceEEEe---cccEEEEEhhhcee
Confidence            46899999999876       69999999999999865    57999973   57899999999874

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=6.2e-10  Score=86.47  Aligned_cols=55  Identities=22%  Similarity=0.499  Sum_probs=46.1

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeecc---------------CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD---------------DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~---------------D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      -+||||||.+..++       +|+|++||+|.|+.+.               +++||.++.. ..++.|+||++|++.
T Consensus         5 ~~raly~y~~~~~~-------eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~-~~g~~G~FP~nYVe~   74 (83)
T d1phta_           5 QYRALYDYKKEREE-------DIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNE-TTGERGDFPGTYVEY   74 (83)
T ss_dssp             EEEECSCBCCSSTT-------BCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEET-TTTEEEEEEGGGEEE
T ss_pred             EEEEcCccCCCCCC-------cccccCCCEEEEEeccccccccccccccccCCCCeEEEEEC-CCCcEeeEehhhEEE
Confidence            47899999999876       6999999999999753               4579999853 267999999999964

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.6e-09  Score=81.22  Aligned_cols=60  Identities=18%  Similarity=0.466  Sum_probs=42.4

Q ss_pred             eeeccccCCCCCCCCcCcCcccccccCceEEEeecc-CCCceEEEEcCCCCceeeecCChhHH
Q psy12793         68 VRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKD-DHNWWQARKDNVAGSAGLIPSPELQE  129 (352)
Q Consensus        68 vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~-D~~WWqaR~~~~~g~~GlIPS~~v~e  129 (352)
                      ++|+++|.+..+. -+....+|+|++||+|.|++++ |++||.++.. .+++.|+||++|++.
T Consensus         7 ~~a~~~y~~~~~~-~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~-~~g~~G~fP~nyVeP   67 (69)
T d1gcqc_           7 MEVFQEYYGIPPP-PGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNT-ATNEVGWFPCNRVHP   67 (69)
T ss_dssp             EEECSCBSSSSCC-GGGCSCBCCBCTTCEEEEEECCTTCSEEEEEET-TTTEEEEEEGGGEEE
T ss_pred             EEEeeeEeccCCC-CCCCCCEeeEcCCCEEEEEEEecCCCEEEEEEC-CCCCEEEEeHHHEEE
Confidence            4677777542210 0011137999999999999764 6789999863 368999999999864

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=6.6e-10  Score=85.90  Aligned_cols=56  Identities=23%  Similarity=0.500  Sum_probs=45.7

Q ss_pred             eeeeccccCCCCCCCCcCcCcccccccCceEEEeeccC-----CCceEEEEcC-------CCCceeeecCChhHH
Q psy12793         67 FVRAQFNYNPLDDDLIPCAQAGIAFQIGDILQIISKDD-----HNWWQARKDN-------VAGSAGLIPSPELQE  129 (352)
Q Consensus        67 ~vRAlfDYdp~~d~~iPc~e~~LsF~kGDIL~Vl~~~D-----~~WWqaR~~~-------~~g~~GlIPS~~v~e  129 (352)
                      .++|+|||.+..++       +|+|++||+|.|+++.+     ++||.+...+       .+++.|+||++|++.
T Consensus        14 ~~~Alydy~a~~~~-------ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~   81 (83)
T d1bb9a_          14 KVQAQHDYTATDTD-------ELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTER   81 (83)
T ss_dssp             EEEESSCBCCSSTT-------BCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEE
T ss_pred             EEEEceeECCCCCC-------EecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEE
Confidence            58999999998865       69999999999998754     5699987532       146789999999863

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.73  E-value=2.6e-09  Score=85.16  Aligned_cols=59  Identities=24%  Similarity=0.405  Sum_probs=49.0

Q ss_pred             Ccccccccc----------ccccceeEEEeecCCcchhhhhccCCCCCccccCCh-hHHHHHHHHhhhcc
Q psy12793        215 KYAYPVPQF----------ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP-ELQEWRTACSTIDK  273 (352)
Q Consensus       215 ~F~~~v~~~----------~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~-~~~~~r~~~~~~~~  273 (352)
                      +|+|....+          +|.+|++|.||++.|.+||+++..+.+|..|||||+ .++++|...++..|
T Consensus        27 lydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~g~~G~~PS~~~~e~~~~~~eq~~~   96 (96)
T d1t0ha_          27 NVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPVKLENMRLQHEQRAK   96 (96)
T ss_dssp             SSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHHHHHHHHHHHHCC
T ss_pred             eeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCCCCEEEecCcHHHHHHhhhhhhhcC
Confidence            577765543          699999999999999999999998888899999998 57778877766543

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.62  E-value=6.6e-09  Score=87.49  Aligned_cols=49  Identities=22%  Similarity=0.327  Sum_probs=40.1

Q ss_pred             ccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHH-HHHhhhc
Q psy12793        224 ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWR-TACSTID  272 (352)
Q Consensus       224 ~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r-~~~~~~~  272 (352)
                      +|.+||||+|+++.|.+|||||..+..|..|||||+-+.|.+ ....+..
T Consensus        48 sF~~gdil~v~~~~d~~WW~~r~~~~~~~~G~iPs~~~lE~~r~~~~~~~   97 (136)
T d1vyua1          48 NFEAKDFLHIKEKYSNDWWIGRLVKEGGDIAFIPSPQRLESIRLKQEQKA   97 (136)
T ss_dssp             EECTTCEEEEEEECSSSEEEEEESSTTCCCEEEECHHHHHHHHHHHTTC-
T ss_pred             CCCCCCEEEEEeccCCCcEEEEeccCCCceeccCchHHHhhhhhhhcccc
Confidence            699999999999999999999998888889999999755544 4433333

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=7.5e-09  Score=87.55  Aligned_cols=49  Identities=22%  Similarity=0.298  Sum_probs=44.0

Q ss_pred             ccccceeEEEeecCCcchhhhhccCCCCCccccCChhHHHHHHHHhhhc
Q psy12793        224 ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPELQEWRTACSTID  272 (352)
Q Consensus       224 ~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~~~~r~~~~~~~  272 (352)
                      +|.+||||+|+++.|.+||+||..+.+|..|||||+-++|.+.......
T Consensus        48 sF~kGDii~V~~~~d~~WW~gr~~~~~g~~G~iPS~~~~e~~~~~~~~~   96 (145)
T d1vyva1          48 SFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPSPLRLENIRIQQEQK   96 (145)
T ss_dssp             CBCTTCEEEEEEEEETTEEEEEESSTTCCCEEEECHHHHHHHHHTTTSS
T ss_pred             cCcCCCEEEEeeccCCCcEEEEEcCCCCceeEeCCchhhhccccccccc
Confidence            7999999999999999999999988889999999998888777765554

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=1.4e-07  Score=73.84  Aligned_cols=46  Identities=28%  Similarity=0.493  Sum_probs=40.9

Q ss_pred             ccccceeEEEeecCCcchhhhhccC---CCCCccccCChhHHHHHHHHh
Q psy12793        224 ITVCSVMFQIISKDDHNWWQARKDN---VAGSAGLIPSPELQEWRTACS  269 (352)
Q Consensus       224 ~~~~~~~~~vl~k~~~~w~~~~~~~---~~~~~g~~p~~~~~~~r~~~~  269 (352)
                      +|.+|++|+||.+.|.+||+++..+   .+|..||||+.-++|+++...
T Consensus        24 sf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~~~~~~   72 (96)
T d1kjwa1          24 SFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVERREWSR   72 (96)
T ss_dssp             CBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHHHHHHTS
T ss_pred             eEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceeeehhhhh
Confidence            8999999999999999999999854   388999999999998877643

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=97.48  E-value=1.5e-05  Score=55.86  Aligned_cols=42  Identities=21%  Similarity=0.625  Sum_probs=34.9

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.||.+.|.+||.++  ...|..|+||+
T Consensus         4 lydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~--~~~g~~G~vP~   48 (53)
T d2rn8a1           4 LYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQ--DKNGHEGYAPS   48 (53)
T ss_dssp             SSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEE--CTTSCEEEECG
T ss_pred             eeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEE--eCCCCEEEEeH
Confidence            566766554   8999999999999999999885  24678899998

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=3.1e-05  Score=54.28  Aligned_cols=41  Identities=29%  Similarity=0.447  Sum_probs=34.4

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .|.|.+..+   +|.+|++|.||.+.+.+||.++++   |..|+||+
T Consensus         6 l~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~---g~~G~~P~   49 (53)
T d1wlpb1           6 IKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD---DVTGYFPS   49 (53)
T ss_dssp             CSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESS---SCEEEECS
T ss_pred             eeeECCCCCCEecCCCCCEEEEEeecCCceEEEEEC---CcEeEecH
Confidence            456666655   899999999999999999988754   67899998

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.35  E-value=2.1e-05  Score=55.48  Aligned_cols=43  Identities=14%  Similarity=0.511  Sum_probs=35.6

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.+++.   |..|+||+.
T Consensus         5 Al~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~---g~~G~~P~~   50 (55)
T d1u06a1           5 ALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN---DRQGFVPAA   50 (55)
T ss_dssp             ECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET---TEEEEEEGG
T ss_pred             ECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEEC---CeEEEEeHH
Confidence            3566776654   899999999999999999998864   568999983

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=3.2e-05  Score=58.03  Aligned_cols=45  Identities=20%  Similarity=0.375  Sum_probs=38.0

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCC--CCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNV--AGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~--~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||.+.+.+||.++..++  .+-.|+||+
T Consensus        12 al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~   61 (80)
T d1ue9a_          12 VTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPA   61 (80)
T ss_dssp             ECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEET
T ss_pred             ECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEh
Confidence            3566776654   89999999999999999999988776  677899998

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=3e-05  Score=54.54  Aligned_cols=45  Identities=20%  Similarity=0.414  Sum_probs=38.1

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+.+.   +|.+|++|.|+.+++.+||...+....|..|+||+
T Consensus         4 alydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~g~~G~~P~   51 (56)
T d1zuua1           4 VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPT   51 (56)
T ss_dssp             ECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTTTEEEEEEG
T ss_pred             EeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCCceEEEEeh
Confidence            3577777765   89999999999999999887766666889999998

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=3.8e-05  Score=54.46  Aligned_cols=43  Identities=23%  Similarity=0.535  Sum_probs=34.9

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +|.|.+...   +|.+|++|.|+.+.|.+||+++..  +|..|+||+.
T Consensus         7 lydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~--~g~~G~vP~~   52 (57)
T d1ckaa_           7 LFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS--EGKRGMIPVP   52 (57)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT--TSCEEEEEGG
T ss_pred             CCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEEC--CCCEEEEcHH
Confidence            466665544   899999999999999999988642  4678999984

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=4e-05  Score=54.38  Aligned_cols=43  Identities=30%  Similarity=0.493  Sum_probs=35.7

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+..||.++. ...|..|+||+
T Consensus         6 lydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~-~~~g~~G~~P~   51 (58)
T d1jo8a_           6 EYDYDAAEDNELTFVENDKIINIEFVDDDWWLGEL-EKDGSKGLFPS   51 (58)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE-TTTCCEEEEEG
T ss_pred             ccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEE-CCCCCEEEEch
Confidence            466766655   89999999999999999998764 44678899998

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=3.9e-05  Score=56.73  Aligned_cols=43  Identities=19%  Similarity=0.393  Sum_probs=34.7

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++..|..+  |+||+
T Consensus        11 Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~~~--G~fP~   56 (71)
T d2hspa_          11 ALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQ--LWFPS   56 (71)
T ss_dssp             CCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSSCCS--CCEET
T ss_pred             EcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECCeEE--EEEch
Confidence            4677776654   9999999999999999999887554433  78998

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=5.8e-05  Score=54.40  Aligned_cols=42  Identities=19%  Similarity=0.420  Sum_probs=35.4

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+..+   +|.+|++|.||.+.+.+||.++.   +|..|+||+
T Consensus        10 Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~---~g~~G~~P~   54 (62)
T d1k4us_          10 ALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES---KGKVGIFPK   54 (62)
T ss_dssp             CCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEEC---SSCEEEECG
T ss_pred             ECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEE---CCcEEEEch
Confidence            4577776554   99999999999999999998875   467899998

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=6.2e-05  Score=54.95  Aligned_cols=43  Identities=33%  Similarity=0.635  Sum_probs=35.9

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+.+.   +|.+|++|.||.+.+.+||.++.  ..|..|+||+
T Consensus         7 Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~--~~g~~G~~P~   52 (67)
T d1gl5a_           7 AMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD--KYGSEGYIPS   52 (67)
T ss_dssp             ECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEEC--SSSCEEEEET
T ss_pred             ECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEE--CCCCEEEEEh
Confidence            4577777665   89999999999999999998752  4677899999

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=4.5e-05  Score=54.15  Aligned_cols=45  Identities=16%  Similarity=0.417  Sum_probs=36.4

Q ss_pred             CCCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        212 FPDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       212 ~p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      +..+|.|.+...   +|.+|++|.||.+.+..||.++..   |..|+||+.
T Consensus         5 ~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~---g~~G~~P~~   52 (58)
T d1ng2a1           5 YRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK---AKRGWIPAS   52 (58)
T ss_dssp             EECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEEC---CCCCCCCGG
T ss_pred             EEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEEC---CCCcEEcHh
Confidence            345677776655   899999999999999999988765   456999984

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=7.1e-05  Score=58.18  Aligned_cols=42  Identities=31%  Similarity=0.678  Sum_probs=35.1

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||.+.|.+||.++.+   |..|+||+
T Consensus        39 Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~---g~~G~~P~   83 (98)
T d1udla_          39 AMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEIN---GVTGLFPS   83 (98)
T ss_dssp             ESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSS---SCBCCEET
T ss_pred             EccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEEC---CeEEEEch
Confidence            3577776654   899999999999999999988754   56799998

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=7.4e-05  Score=54.50  Aligned_cols=45  Identities=27%  Similarity=0.466  Sum_probs=36.6

Q ss_pred             CCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        213 PDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       213 p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      ..+|.|.+...   +|.+|++|.|+.+.+.+||.++.  .+|..||||+.
T Consensus        12 ~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~--~~g~~G~vP~~   59 (67)
T d1awwa_          12 VALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD--KNGQEGYIPSN   59 (67)
T ss_dssp             EBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBC--TTSCBCCEETT
T ss_pred             EECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEE--CCCCEEEEcHH
Confidence            34577777665   89999999999999999998752  36778999983

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=5.3e-05  Score=56.27  Aligned_cols=45  Identities=11%  Similarity=0.132  Sum_probs=37.8

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCC---CCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNV---AGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~---~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||.+.+.+||.++....   .|..||||+
T Consensus        12 al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~   62 (74)
T d1wfwa_          12 VIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPG   62 (74)
T ss_dssp             CCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEG
T ss_pred             EeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEch
Confidence            4577776654   89999999999999999999987553   678899998

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=5.5e-05  Score=53.85  Aligned_cols=42  Identities=24%  Similarity=0.558  Sum_probs=35.1

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.+.+||.++.   .|..|+||+
T Consensus         7 Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~---~g~~G~~P~   51 (58)
T d1uj0a_           7 ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN---HRGTGLFPS   51 (58)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEG
T ss_pred             ECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEE---CCeEEEEeh
Confidence            4577776654   89999999999999999998775   467899998

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=2.2e-05  Score=56.78  Aligned_cols=45  Identities=27%  Similarity=0.471  Sum_probs=36.6

Q ss_pred             CCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        213 PDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       213 p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      ..+|.|.+.+.   +|.+|++|.|+.+.+.+||.++.. ..|..|+||+
T Consensus         6 vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~~g~~G~vP~   53 (64)
T d1fmka1           6 VALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSL-STGQTGYIPS   53 (64)
T ss_dssp             EESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEET-TTCCEEEEEG
T ss_pred             EECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEEC-CCCCEEEEeh
Confidence            34677776655   899999999999999999977653 3677999998

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=9.1e-05  Score=52.49  Aligned_cols=43  Identities=16%  Similarity=0.443  Sum_probs=35.0

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.|+.+.|.+||.++.   +|..|+||+.
T Consensus         6 Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~---~g~~G~~P~~   51 (57)
T d1utia_           6 ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL---HNKLGLFPAN   51 (57)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEE---TTEEEEEEGG
T ss_pred             ECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEE---CCcEEEEEHH
Confidence            3566776654   89999999999999999998865   4667999983

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=96.87  E-value=0.00012  Score=52.02  Aligned_cols=41  Identities=24%  Similarity=0.586  Sum_probs=33.7

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++..   |..|+||+
T Consensus         8 lydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~---g~~G~~P~   51 (58)
T d1sema_           8 LFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLN---NRRGIFPS   51 (58)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEET---TEEEEEEG
T ss_pred             CCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEEC---CeEEEEEh
Confidence            456665544   899999999999999999988764   57899997

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=0.00012  Score=51.59  Aligned_cols=41  Identities=17%  Similarity=0.490  Sum_probs=33.4

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+.+||.++.+   |..|+||+
T Consensus         7 lydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~---g~~G~~P~   50 (56)
T d1gcqa_           7 LFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH---GQTGMFPR   50 (56)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET---TEEEEEEG
T ss_pred             CcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEEC---CeEEEEEH
Confidence            455655443   899999999999999999987664   67899998

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00012  Score=58.42  Aligned_cols=45  Identities=29%  Similarity=0.397  Sum_probs=36.7

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCChhH
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPEL  261 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~  261 (352)
                      .+|.|.+...   +|.+|++|.||.+.+.+||.++..   |..|+||+-=+
T Consensus        19 alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~---g~~G~~P~~yv   66 (118)
T d1ng2a2          19 AIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD---DVTGYFPSMYL   66 (118)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEET---TEEEEEEGGGE
T ss_pred             ECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEEC---CeEEEEehhhE
Confidence            4577776654   899999999999999999988764   56899998443

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00014  Score=51.01  Aligned_cols=44  Identities=32%  Similarity=0.588  Sum_probs=35.1

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+++.+||.++.. ..|..|+||+
T Consensus         5 Al~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~~g~~G~vP~   51 (57)
T d1efna_           5 ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSL-TTGETGYIPS   51 (57)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEET-TTTEEEEEEG
T ss_pred             ECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEEC-CCCCEEEEeH
Confidence            3566766554   899999999999999999988642 3567899997

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.77  E-value=0.00015  Score=51.64  Aligned_cols=41  Identities=22%  Similarity=0.680  Sum_probs=33.1

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+ +||.++..  .|..|+||+
T Consensus         7 lydf~a~~~~ELs~~~Gd~i~v~~~~~-~ww~~~~~--~g~~G~~P~   50 (59)
T d1i07a_           7 KYDFVARNSSELSVMKDDVLEILDDRR-QWWKVRNA--SGDSGFVPN   50 (59)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEECGGGC-CEEEEECT--TSCEEEEEG
T ss_pred             ccCCCCCCCCeeeEcCCCEEEEEEEcC-CcEEEEEc--CCCEEEECH
Confidence            577776655   899999999999865 79987642  577899998

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.00014  Score=51.76  Aligned_cols=45  Identities=16%  Similarity=0.265  Sum_probs=36.0

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+.+.   +|.+|++|.|+.+.+..||.++.. ..|..|+||+.
T Consensus         8 Al~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~-~~g~~G~vP~n   55 (60)
T d1arka_           8 AMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQ-RTGRTGMLPAN   55 (60)
T ss_dssp             CCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECT-TTCCEEEEETT
T ss_pred             ECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEEC-CCCCEEEEcHH
Confidence            4577776655   899999999999999999977542 25678999983

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00021  Score=53.20  Aligned_cols=43  Identities=14%  Similarity=0.467  Sum_probs=35.8

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.||.+.+.+||.++..   |..|+||+-
T Consensus        15 Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~---g~~G~~P~~   60 (76)
T d1ujya_          15 ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN---GRTGWFPSN   60 (76)
T ss_dssp             CCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEET---TEEEEECTT
T ss_pred             ECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEEC---CcEEEEchH
Confidence            4677776655   899999999999999999988764   567999993

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.69  E-value=0.00055  Score=54.49  Aligned_cols=28  Identities=25%  Similarity=0.500  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ++++|+|.||+||||+|+.++|++..+.
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~~~   28 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKNPG   28 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCCC
Confidence            4678999999999999999999887765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.64  E-value=0.00049  Score=54.91  Aligned_cols=28  Identities=21%  Similarity=0.451  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ++++|+|.||+||||+|+.++|.+..+.
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~~~   28 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQLDN   28 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3578999999999999999999988764

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00021  Score=51.56  Aligned_cols=42  Identities=24%  Similarity=0.488  Sum_probs=33.4

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcc---hhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHN---WWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~---w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||.++|.+   ||.++.   +|..|+||+
T Consensus         9 Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~---~g~~G~~P~   56 (63)
T d1ycsb2           9 ALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARL---NDKEGYVPR   56 (63)
T ss_dssp             ESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEE---TTEEEEEEG
T ss_pred             EeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEE---CCeEEEEch
Confidence            4577776654   99999999999987654   998875   466799997

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.00029  Score=51.77  Aligned_cols=43  Identities=21%  Similarity=0.466  Sum_probs=34.2

Q ss_pred             CCCCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        212 FPDKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       212 ~p~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +..+|.|.+...   +|.+|++|.||.++ .+||.++.   +|..|+||+
T Consensus        11 ~vAl~~y~~~~~~eLs~~~Gd~v~vl~~~-~~Ww~~~~---~g~~G~vP~   56 (69)
T d1uhfa_          11 YIALYPYSSVEPGDLTFTEGEEILVTQKD-GEWWTGSI---GDRSGIFPS   56 (69)
T ss_dssp             EECSSCBCCSSSSBCCBCTTCEEEECEEE-TTEEEECS---TTCCEEECG
T ss_pred             EEECccCCCCCcCCcCCCCCCEEEEEEec-CCEEEEEE---CCcEEEEch
Confidence            345677877655   89999999999875 58998775   466899998

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.57  E-value=0.00028  Score=55.97  Aligned_cols=46  Identities=20%  Similarity=0.308  Sum_probs=37.1

Q ss_pred             CCcccccccc---ccccceeEEEeec---CCcchhhhhccCC-----CCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISK---DDHNWWQARKDNV-----AGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k---~~~~w~~~~~~~~-----~~~~g~~p~~  259 (352)
                      .+|.|.+...   +|.+|++|.||.|   .+.+||.++..|.     +|..|+||+-
T Consensus        26 Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~n   82 (106)
T d1i1ja_          26 ALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS   82 (106)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGG
T ss_pred             EccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccc
Confidence            4577776654   8999999999998   5688999887764     5778999993

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.00025  Score=51.65  Aligned_cols=43  Identities=28%  Similarity=0.576  Sum_probs=33.2

Q ss_pred             CCcccccc--c-c-ccccceeEEEeecCC-----cchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVP--Q-F-ITVCSVMFQIISKDD-----HNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~--~-~-~~~~~~~~~vl~k~~-----~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+.  . + +|.+|++|.||.+.|     .+||.++.  .+|..|+||+
T Consensus        10 Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~--~~G~~G~~P~   61 (67)
T d2v1ra1          10 ALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT--KNGNIGYIPY   61 (67)
T ss_dssp             ESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEC--TTSCEEEEEG
T ss_pred             ECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEe--CCCCEEEEEH
Confidence            45777653  2 3 899999999999875     58998863  3577899998

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.53  E-value=0.00036  Score=51.44  Aligned_cols=46  Identities=9%  Similarity=0.268  Sum_probs=33.6

Q ss_pred             CCCCccccccc--c--ccccceeEEEeecCCcc-hhhhhccCCCCCccccCC
Q psy12793        212 FPDKYAYPVPQ--F--ITVCSVMFQIISKDDHN-WWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       212 ~p~~F~~~v~~--~--~~~~~~~~~vl~k~~~~-w~~~~~~~~~~~~g~~p~  258 (352)
                      +..+|.|.+..  +  +|.+|++|.||.+.+.+ ||.+ .....|..|+||+
T Consensus        10 ~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g-~~~~~g~~G~fP~   60 (72)
T d1spka_          10 VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYG-EHDTTKARGWFPS   60 (72)
T ss_dssp             EECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEE-EETTTCCEEEEEG
T ss_pred             EEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEE-EECCCCCEEEEch
Confidence            34578887643  2  89999999999887766 5544 3444677899998

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00071  Score=53.13  Aligned_cols=26  Identities=23%  Similarity=0.583  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ++.|+|+||+||||+|+.+.|++...
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999998753

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.43  E-value=0.0011  Score=53.01  Aligned_cols=29  Identities=21%  Similarity=0.496  Sum_probs=25.4

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCCc
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDKY  216 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~F  216 (352)
                      .++|+|.|++||||+|+.+.|.+..+..+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~   31 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPW   31 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence            47889999999999999999999877543

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.37  E-value=0.00077  Score=54.05  Aligned_cols=29  Identities=31%  Similarity=0.504  Sum_probs=25.4

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ...+.|+|+||+||||+|+.++|.+....
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~~~~~   33 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAAVFNT   33 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            45688999999999999999999997653

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.33  E-value=0.00051  Score=48.42  Aligned_cols=42  Identities=14%  Similarity=0.359  Sum_probs=31.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcc-hhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHN-WWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~-w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||.+.+.. ||.++.   .|..|+||+
T Consensus         5 Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~---~g~~G~~P~   50 (57)
T d1opka1           5 ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT---KNGQGWVPS   50 (57)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEEC---SSCEEEEEG
T ss_pred             ECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEE---CCCEeEEch
Confidence            3566776655   89999999999987765 555554   456799998

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.00068  Score=50.21  Aligned_cols=41  Identities=15%  Similarity=0.395  Sum_probs=32.5

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+..+   +|.+|++|.||.++ .+||.++.   +|..|+||+
T Consensus        15 alydy~a~~~~ELs~~~Gd~i~vl~~~-~~ww~g~~---~g~~G~fP~   58 (74)
T d1j3ta_          15 ALCSWTAKKDNHLNFSKHDIITVLEQQ-ENWWFGEV---HGGRGWFPK   58 (74)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEEEC-SSEEEEES---TTCCCEEEG
T ss_pred             EccCCCCCCCCEecCCCCCEEEEEEcc-CCeEEEEE---CCcEEEEch
Confidence            4577776654   89999999999985 58997665   467899998

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.00  E-value=0.00036  Score=52.80  Aligned_cols=45  Identities=13%  Similarity=0.305  Sum_probs=35.4

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcc-----hhhhhccC-------CCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHN-----WWQARKDN-------VAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~-----w~~~~~~~-------~~~~~g~~p~  258 (352)
                      .+|.|.+.+.   +|.+|++|.||++.+.+     ||.+..++       .+|..|+||+
T Consensus        17 Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~   76 (83)
T d1bb9a_          17 AQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPE   76 (83)
T ss_dssp             ESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEG
T ss_pred             EceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEch
Confidence            4577776655   89999999999998754     99876644       2577899998

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.00067  Score=47.59  Aligned_cols=42  Identities=24%  Similarity=0.582  Sum_probs=28.5

Q ss_pred             CCcccccccc---ccccceeEEEeecC-CcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD-DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~-~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||++. +..||.++.   +|..|+||+
T Consensus         5 Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~---~g~~G~vP~   50 (56)
T d1gria1           5 AKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL---NGKDGFIPK   50 (56)
T ss_dssp             ECSCBCCCSSSCCCBCTTCEEEC------CCEEEEES---SSCEEEEEG
T ss_pred             EeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEE---CCcEEEEeh
Confidence            3577776655   99999999999976 566776654   567899997

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.00094  Score=49.96  Aligned_cols=42  Identities=24%  Similarity=0.569  Sum_probs=33.3

Q ss_pred             CCcccccccc---ccccceeEEEeecCC----cchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDD----HNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~----~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+.+.   +|.+|++|.||.+.+    ..||.++++   |..||||+
T Consensus        18 Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~---g~~G~vP~   66 (79)
T d1uhca_          18 AVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN---GKKGYVPS   66 (79)
T ss_dssp             ESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESS---SCEEEEEG
T ss_pred             ECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEEC---CCEEEEeh
Confidence            4577776655   899999999998754    679988765   55799998

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0023  Score=51.42  Aligned_cols=26  Identities=19%  Similarity=0.525  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..++|||+||+||||+|+.+.|.+..
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            56899999999999999999998864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.90  E-value=0.0022  Score=51.61  Aligned_cols=27  Identities=30%  Similarity=0.366  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .+++|+|.||+||||+|+.+.|.+...
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg   29 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG   29 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            368899999999999999999987643

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0013  Score=46.74  Aligned_cols=42  Identities=21%  Similarity=0.423  Sum_probs=31.3

Q ss_pred             Ccccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.|+.+.+. ||.++.. ..|..|+||+
T Consensus        12 l~dy~a~~~~eLs~~~Gd~i~v~~~~~~-ww~~~~~-~~g~~G~~P~   56 (62)
T d2iima1          12 LHSYEPSHDGDLGFEKGEQLRILEQSGE-WWKAQSL-TTGQEGFIPF   56 (62)
T ss_dssp             SSCBCCCSTTBCCBCTTCEEEEEECCSS-EEEEEET-TTCCEEEEEG
T ss_pred             CCCCCcCCcCCcCCCCCCEEEEeEEcCC-CEEEEec-cCCeEeEEcH
Confidence            466776655   8999999999999876 5544321 2578999998

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0011  Score=48.46  Aligned_cols=43  Identities=21%  Similarity=0.546  Sum_probs=32.7

Q ss_pred             CCcccccccc---ccccceeEEEeecCC--cchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDD--HNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~--~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||.+.+  .+||.++.  .+|..|+||+
T Consensus        11 Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~--~~G~~G~vP~   58 (71)
T d1u5sa1          11 TLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN--ARGQVGLVPK   58 (71)
T ss_dssp             ESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEE--TTTEEEEEET
T ss_pred             ECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEE--CCCCEEEECh
Confidence            3466666544   899999999999754  47997753  2577899998

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0014  Score=47.92  Aligned_cols=43  Identities=26%  Similarity=0.521  Sum_probs=32.5

Q ss_pred             CCcccccccc---ccccceeEEEeecC-CcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD-DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~-~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||.+. +..||.++.  ..|..|+||+
T Consensus        11 Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~--~~g~~G~~P~   57 (71)
T d1k9aa1          11 AKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN--KVGREGIIPA   57 (71)
T ss_dssp             ESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEEC--TTCCEEEEEG
T ss_pred             EccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEe--CCCCEEEEch
Confidence            3577776554   89999999999986 556776643  3577899998

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0014  Score=50.48  Aligned_cols=41  Identities=20%  Similarity=0.302  Sum_probs=32.9

Q ss_pred             Ccccccccc---ccccceeEEEeecCC----cchhhhhccCCCCCccccCC
Q psy12793        215 KYAYPVPQF---ITVCSVMFQIISKDD----HNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       215 ~F~~~v~~~---~~~~~~~~~vl~k~~----~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.|.+...   +|.+|++|.||.+.|    .+||.++..   |..|+||+
T Consensus        23 ~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~---g~~G~~P~   70 (92)
T d1ug1a_          23 ERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNG---VTKGFVYS   70 (92)
T ss_dssp             SSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECS---SSEEEEEG
T ss_pred             cCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEec---ccEEEEEh
Confidence            466666655   899999999999975    679987664   56799998

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.0042  Score=51.85  Aligned_cols=28  Identities=18%  Similarity=0.414  Sum_probs=24.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |.....|+|+||+||||+|+..+|.+.+
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4456789999999999999999998864

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=95.61  E-value=0.0032  Score=50.24  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .-|+|+||+||||+|+.++|.+..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            347899999999999999998864

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.59  E-value=0.0041  Score=51.73  Aligned_cols=26  Identities=23%  Similarity=0.509  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ....|+|+||+||||+|+.++|++..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            44678889999999999999998853

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.0018  Score=45.65  Aligned_cols=42  Identities=24%  Similarity=0.571  Sum_probs=32.4

Q ss_pred             CCcccccccc---ccccceeEEEeecCCc--chhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDH--NWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~--~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.||.+.|.  .||.++.   .|..|+||+
T Consensus         6 Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~---~g~~G~vP~   52 (58)
T d1oota_           6 ALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRV---NGREGIFPA   52 (58)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEE---TTEEEEEEG
T ss_pred             EccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEE---CCcEEEEcH
Confidence            3577776655   9999999999999864  4676654   467899998

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0017  Score=49.23  Aligned_cols=46  Identities=15%  Similarity=0.235  Sum_probs=34.3

Q ss_pred             CCCcccccccc---ccccceeEEEeecCCc--chhhhhccCCCCCccccCChhH
Q psy12793        213 PDKYAYPVPQF---ITVCSVMFQIISKDDH--NWWQARKDNVAGSAGLIPSPEL  261 (352)
Q Consensus       213 p~~F~~~v~~~---~~~~~~~~~vl~k~~~--~w~~~~~~~~~~~~g~~p~~~~  261 (352)
                      ..+|.|.+.+.   +|.+|++|.||.+++.  .||..+.   +|..||||+-=+
T Consensus         9 rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~---~g~~G~~P~~Yv   59 (93)
T d1uffa_           9 RALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSF---QGNFGWFPCNYV   59 (93)
T ss_dssp             EESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEE---TTEEEEEETTTE
T ss_pred             EECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEe---CCcEEEEchHHE
Confidence            34677876655   8999999999988754  4665554   567899999443

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.40  E-value=0.0045  Score=50.76  Aligned_cols=25  Identities=20%  Similarity=0.442  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +.++|||+|++||||+|+.+.|++.
T Consensus         1 M~~~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           1 MTEPIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CCCCEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHH
Confidence            3578999999999999999999875

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.31  E-value=0.0017  Score=47.46  Aligned_cols=34  Identities=21%  Similarity=0.579  Sum_probs=27.4

Q ss_pred             ccccceeEEEeec-CCcchhhhhccCCCCCccccCC
Q psy12793        224 ITVCSVMFQIISK-DDHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       224 ~~~~~~~~~vl~k-~~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      +|.+||+|.||.+ .|..||.++.. .+|..|+||+
T Consensus        28 sf~~GD~i~Vl~~~~~~gWw~G~~~-~~g~~G~fP~   62 (69)
T d1gcqc_          28 RLNPGDIVELTKAEAEHNWWEGRNT-ATNEVGWFPC   62 (69)
T ss_dssp             CBCTTCEEEEEECCTTCSEEEEEET-TTTEEEEEEG
T ss_pred             eEcCCCEEEEEEEecCCCEEEEEEC-CCCCEEEEeH
Confidence            8999999999986 46789987542 3567899998

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.29  E-value=0.0063  Score=48.40  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=22.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+.+|.|+|++||||+|+.+.|.+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            35677889999999999999988865

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.0047  Score=47.83  Aligned_cols=48  Identities=17%  Similarity=0.232  Sum_probs=33.1

Q ss_pred             CCCccccccc--------c-ccccceeEEEeecCCcchhhhhccCCCCCccccCChhH
Q psy12793        213 PDKYAYPVPQ--------F-ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSPEL  261 (352)
Q Consensus       213 p~~F~~~v~~--------~-~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~~~  261 (352)
                      ..+|.|.+..        . +|.+|++|.|+.+.|.+||-.+.. ..|..||||+-=+
T Consensus        21 ~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~-~~G~~G~~P~nyv   77 (96)
T d1wiea_          21 VARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGEL-LDGQRGLVPSNFV   77 (96)
T ss_dssp             EESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEE-TTCCBCBCCTTSE
T ss_pred             EEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEe-CCCCEEEEehHHe
Confidence            3567775431        2 899999999999988885533221 2467899999433

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.17  E-value=0.0029  Score=45.19  Aligned_cols=44  Identities=23%  Similarity=0.459  Sum_probs=32.0

Q ss_pred             CCcccccccc---ccccceeEEEeecCCcchhhhhccCCCCCccccCCh
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKDDHNWWQARKDNVAGSAGLIPSP  259 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~~~~w~~~~~~~~~~~~g~~p~~  259 (352)
                      .+|.|.+..+   +|.+|++|.|+.+++ +||.++.. ..|..|+||+.
T Consensus         9 Alydy~~~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~-~~g~~G~vP~~   55 (65)
T d1qcfa1           9 ALYDYEAIHHEDLSFQKGDQMVVLEESG-EWWKARSL-ATRKEGYIPSN   55 (65)
T ss_dssp             ESSCBCCCSTTBCCBCTTCEEEEEECCT-TEEEEEET-TTCCEEEEEGG
T ss_pred             ECCcCCCCCcCccCCCCCCEEEEEEECC-CCEEEEEc-cCCCEEEEchH
Confidence            3566776655   899999999999766 57755432 24678999983

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=95.15  E-value=0.0073  Score=48.32  Aligned_cols=27  Identities=11%  Similarity=0.394  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      +.-|+|+||+||||+|+.+.|.+....
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            346889999999999999999988653

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.07  E-value=0.0068  Score=50.60  Aligned_cols=26  Identities=23%  Similarity=0.551  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+.|+|+||+||||+|+..+|++.+
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999999875

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.0023  Score=46.96  Aligned_cols=43  Identities=21%  Similarity=0.404  Sum_probs=33.0

Q ss_pred             CCCcccccccc---ccccceeEEEeecCCcc-hhhhhccCCCCCccccCC
Q psy12793        213 PDKYAYPVPQF---ITVCSVMFQIISKDDHN-WWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       213 p~~F~~~v~~~---~~~~~~~~~vl~k~~~~-w~~~~~~~~~~~~g~~p~  258 (352)
                      ..+|.|.+...   +|.+|++|.||.+.+.+ ||.++.   .|..|+||+
T Consensus        14 ~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~---~g~~G~~P~   60 (72)
T d1ugva_          14 KALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTL---NGKTGLIPE   60 (72)
T ss_dssp             EESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEES---SSCEEEEEG
T ss_pred             EEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEe---CCCEEEEch
Confidence            34577776655   89999999999988766 665544   467899998

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.88  E-value=0.0082  Score=48.00  Aligned_cols=23  Identities=26%  Similarity=0.471  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ++|+|.|++||||+|+.++|.+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999875

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.83  E-value=0.0078  Score=48.42  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      +++|||.|++||||+|+.++|....+
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999987644

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.0099  Score=47.20  Aligned_cols=24  Identities=21%  Similarity=0.293  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      -+.|.|+|++||||+||.++|+..
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            357888999999999999999874

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.67  E-value=0.0094  Score=48.45  Aligned_cols=25  Identities=16%  Similarity=0.316  Sum_probs=20.9

Q ss_pred             CCcEEE-EEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLV-LLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iV-L~GPsG~gk~tl~~~L~~~  211 (352)
                      .+++|| |.||+||||+|+.++|.+.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            355555 8999999999999999875

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.55  E-value=0.0098  Score=48.34  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |||+||+||||+|+..+|++..
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999998864

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=94.55  E-value=0.012  Score=48.67  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +.-|||+||+||||+|+..+|++.+
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHh
Confidence            3456688999999999999998864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.0069  Score=49.41  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=23.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .+.+..|+|+|++||||+|+.+.|...
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            345778889999999999999999774

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.35  E-value=0.012  Score=48.73  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..|+|+||+||||+|+.++|++...
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3488999999999999999988753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.011  Score=49.03  Aligned_cols=24  Identities=13%  Similarity=0.394  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +.|+|.||+||||+|+..+|++.+
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHh
Confidence            466777999999999999999975

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.19  E-value=0.013  Score=48.07  Aligned_cols=23  Identities=30%  Similarity=0.534  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      -|||+||+||||+|+.++|++.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47889999999999999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.017  Score=47.62  Aligned_cols=24  Identities=21%  Similarity=0.504  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..|+|+||+||||+|+..+|++..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            357889999999999999998864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=93.93  E-value=0.019  Score=48.14  Aligned_cols=26  Identities=19%  Similarity=0.497  Sum_probs=21.7

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +..-|||+||+||||+|+..+|++.+
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            34457788999999999999999864

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=93.92  E-value=0.016  Score=47.65  Aligned_cols=23  Identities=26%  Similarity=0.686  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      -|+|+||+||||+|+.++|++..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37889999999999999999864

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.91  E-value=0.018  Score=47.78  Aligned_cols=27  Identities=15%  Similarity=0.222  Sum_probs=22.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ....+|||+|++||||+|+.++|+...
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~   38 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSA   38 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            345799999999999999999997653

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=93.79  E-value=0.017  Score=47.05  Aligned_cols=23  Identities=22%  Similarity=0.561  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|||+|++||||+|+.+.|++..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998864

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.019  Score=45.38  Aligned_cols=23  Identities=22%  Similarity=0.433  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |.|+|.||+|+||+|+...++..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            67899999999999999988764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.60  E-value=0.018  Score=47.05  Aligned_cols=23  Identities=26%  Similarity=0.538  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      -|||+||+||||+|+.++|++..
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999998764

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.32  E-value=0.027  Score=46.23  Aligned_cols=23  Identities=22%  Similarity=0.377  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .+|+|+|.+||||+|+.++|.+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~   25 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRY   25 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46888999999999999999864

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.25  E-value=0.024  Score=45.88  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |||+|++||||+|+.+.|.+..
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7788999999999999998753

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.08  E-value=0.027  Score=45.22  Aligned_cols=23  Identities=17%  Similarity=0.632  Sum_probs=20.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      |.|.||+|+||+|+.+.++...+
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~   25 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCC
Confidence            78899999999999999987543

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.07  E-value=0.026  Score=46.33  Aligned_cols=23  Identities=30%  Similarity=0.628  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      -|||+||+||||+|+.++|++..
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36778999999999999998863

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.76  E-value=0.04  Score=46.92  Aligned_cols=27  Identities=15%  Similarity=0.316  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+.++|.||+|+||+++...++++.
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence            345789999999999999999998864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.61  E-value=0.1  Score=42.14  Aligned_cols=120  Identities=13%  Similarity=0.187  Sum_probs=62.5

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCcccccccc--c----cccceeEEEeecCCcchhhhhccCC-CCCcccc------
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKYAYPVPQF--I----TVCSVMFQIISKDDHNWWQARKDNV-AGSAGLI------  256 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F~~~v~~~--~----~~~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~------  256 (352)
                      |+|+|.+||||+++..+++.. ++..+...+...  .    -...-.+++.+-...+....-+... .+..++|      
T Consensus         7 i~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~   86 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVT   86 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETT
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccccccccccccccccccccccccccchhhhhhhccEEEEecccc
Confidence            678899999999999999873 233332222211  0    1123334444444333332222211 2333333      


Q ss_pred             CChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCc
Q psy12793        257 PSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQ  325 (352)
Q Consensus       257 p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~  325 (352)
                      -..||+........+.+.....+.-.+...-+    .| ....       +   =|+.++.++++....
T Consensus        87 d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK----~D-l~~~-------~---~v~~e~~~~~~~~~~  140 (169)
T d1x1ra1          87 DKASFEHVDRFHQLILRVKDRESFPMILVANK----VD-LMHL-------R---KVTRDQGKEMATKYN  140 (169)
T ss_dssp             CHHHHHTHHHHHHHHHHHHTSSCCCEEEEEEC----TT-CSTT-------C---CSCHHHHHHHHHHHT
T ss_pred             cchhhhccchhhHHHHhhccccCccEEEEecc----cc-hhhh-------c---eeehhhHHHHHHHcC
Confidence            56788888888877775544444433333211    00 0111       1   178888877777664

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.52  E-value=0.049  Score=46.36  Aligned_cols=28  Identities=14%  Similarity=0.402  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ..+.|+|.||+|+||+++...|+.....
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            3467889999999999999999887543

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.39  E-value=0.032  Score=46.61  Aligned_cols=22  Identities=14%  Similarity=0.443  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |.|.||+||||+|+.++|++.+
T Consensus         6 IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            3466999999999999999864

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.27  E-value=0.047  Score=44.00  Aligned_cols=24  Identities=8%  Similarity=0.224  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ++.|-|+|++||||+|+..+|+..
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHH
Confidence            467789999999999999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=92.01  E-value=0.046  Score=42.50  Aligned_cols=22  Identities=18%  Similarity=0.288  Sum_probs=19.7

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |||+|++||||++|.++|....
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6889999999999999998753

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.95  E-value=0.053  Score=41.85  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=19.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+|++||||++|.++|....
T Consensus         3 I~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999999864

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.75  E-value=0.011  Score=44.60  Aligned_cols=44  Identities=14%  Similarity=0.265  Sum_probs=32.3

Q ss_pred             CCcccccccc---ccccceeEEEeecC---------------CcchhhhhccCCCCCccccCC
Q psy12793        214 DKYAYPVPQF---ITVCSVMFQIISKD---------------DHNWWQARKDNVAGSAGLIPS  258 (352)
Q Consensus       214 ~~F~~~v~~~---~~~~~~~~~vl~k~---------------~~~w~~~~~~~~~~~~g~~p~  258 (352)
                      .+|.|.+...   +|.+|++|.|+.+.               +..||.++. -..|..|+||+
T Consensus         8 aly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~-~~~g~~G~FP~   69 (83)
T d1phta_           8 ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYN-ETTGERGDFPG   69 (83)
T ss_dssp             ECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEE-TTTTEEEEEEG
T ss_pred             EcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEE-CCCCcEeeEeh
Confidence            4577776544   89999999999875               345997653 22567889998

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.47  E-value=0.056  Score=45.45  Aligned_cols=30  Identities=23%  Similarity=0.358  Sum_probs=25.0

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCCc
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDKY  216 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~F  216 (352)
                      .+++++|.||+|+||+++..+++...+..+
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~   57 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELNLPY   57 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHTCCE
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCCCCe
Confidence            457899999999999999999987665544

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.17  E-value=0.15  Score=41.65  Aligned_cols=24  Identities=13%  Similarity=0.367  Sum_probs=21.4

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..|+|+|++||||+||.++|+...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999764

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.92  E-value=0.065  Score=47.17  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++..||+|+|||||+||.+.|...
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcch
Confidence            4678899999999999999999643

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=90.76  E-value=0.084  Score=44.54  Aligned_cols=24  Identities=25%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...++|.||+|+||+++...++++
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            346899999999999999988764

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.29  E-value=0.26  Score=39.95  Aligned_cols=82  Identities=12%  Similarity=0.146  Sum_probs=43.6

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCcccccccc------ccccceeEEEeecCCcchhhhhccCC-CCCcccc------
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKYAYPVPQF------ITVCSVMFQIISKDDHNWWQARKDNV-AGSAGLI------  256 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F~~~v~~~------~~~~~~~~~vl~k~~~~w~~~~~~~~-~~~~g~~------  256 (352)
                      |||+|.+||||++|.++++.. ++..+...+...      .-.+.-.+++.+-...++++.-+... .+..++|      
T Consensus         8 ivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~   87 (183)
T d1mh1a_           8 CVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLV   87 (183)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETT
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeeeeeccCcceEEEeecccccccchhhhhhcccccceeeeeeccc
Confidence            788999999999999999874 344333222211      11233334555544445544443332 3333322      


Q ss_pred             CChhHHHHHHHHhhhc
Q psy12793        257 PSPELQEWRTACSTID  272 (352)
Q Consensus       257 p~~~~~~~r~~~~~~~  272 (352)
                      -..||+..+.-.....
T Consensus        88 ~~~sf~~i~~~~~~~~  103 (183)
T d1mh1a_          88 SPASFENVRAKWYPEV  103 (183)
T ss_dssp             CHHHHHHHHHTHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            3456766655333333

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=90.24  E-value=0.11  Score=43.62  Aligned_cols=26  Identities=23%  Similarity=0.350  Sum_probs=22.3

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ....++|.||+|+||+++.+.+++..
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            44689999999999999999988753

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=90.23  E-value=0.08  Score=45.96  Aligned_cols=31  Identities=19%  Similarity=0.326  Sum_probs=19.8

Q ss_pred             EeccCCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        181 VKLPSFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       181 ~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++|......|+|+||+||||+|-..+|+..
T Consensus         5 ~~~~~k~p~vi~lvGptGvGKTTTiAKLA~~   35 (211)
T d1j8yf2           5 KVIPDKIPYVIMLVGVQGTGKATTAGKLAYF   35 (211)
T ss_dssp             CCSCSSSSEEEEEECSCCC----HHHHHHHH
T ss_pred             ccCCCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3344445566778999999999999999764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=90.10  E-value=0.092  Score=43.85  Aligned_cols=25  Identities=24%  Similarity=0.573  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +++.|||-|+.||||+|+.++|.+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~   25 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVET   25 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHH
Confidence            3689999999999999999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.06  E-value=0.16  Score=40.45  Aligned_cols=26  Identities=23%  Similarity=0.538  Sum_probs=21.2

Q ss_pred             EEEEcCCCCChhHHHHHHHh-hCCCCc
Q psy12793        191 LVLLGAHGVGRRHIKNTLIN-KFPDKY  216 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~-~~p~~F  216 (352)
                      |+|+|++||||++|.++++. +++..+
T Consensus         5 v~liG~~~vGKSsLi~rl~~~~~~~~~   31 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKGIFTKDY   31 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCCCCCCS
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCccc
Confidence            78899999999999999986 344433

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=90.04  E-value=0.084  Score=44.64  Aligned_cols=26  Identities=15%  Similarity=0.494  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      +.++|.||+|+||+++.+.++++...
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~   61 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQT   61 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCC
Confidence            45889999999999999999886543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=89.92  E-value=0.098  Score=40.67  Aligned_cols=22  Identities=27%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+|.+||||++|.++++...
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999998753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=89.86  E-value=0.077  Score=45.29  Aligned_cols=28  Identities=18%  Similarity=0.347  Sum_probs=23.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+||||+||+|+.+.+....
T Consensus        24 i~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          24 IEKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            3467899999999999999999887643

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.64  E-value=0.11  Score=44.18  Aligned_cols=25  Identities=20%  Similarity=0.383  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ++++|+|.|+.||||+|+.+.|.+.
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHH
Confidence            4689999999999999988888664

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.60  E-value=0.19  Score=40.32  Aligned_cols=27  Identities=30%  Similarity=0.587  Sum_probs=21.6

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCcc
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKYA  217 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F~  217 (352)
                      |||+|++||||++|.++++.. +++.+.
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~f~~~~~   32 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKRFIWEYD   32 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCCCSCCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCccC
Confidence            688999999999999999874 344443

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=89.58  E-value=0.11  Score=42.47  Aligned_cols=25  Identities=32%  Similarity=0.519  Sum_probs=21.2

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .-+.|+|+|++||||+|+.+.|...
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCC
Confidence            3346899999999999999999853

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=89.57  E-value=0.1  Score=44.13  Aligned_cols=25  Identities=20%  Similarity=0.580  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+.++|.||+|+||+++.+.+.++.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3568899999999999999888754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.54  E-value=0.42  Score=40.30  Aligned_cols=88  Identities=17%  Similarity=0.124  Sum_probs=49.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCCC-Ccccccccc-ccccceeEEEeecCCcchhhhhc-cCCCCCccccC---------
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFPD-KYAYPVPQF-ITVCSVMFQIISKDDHNWWQARK-DNVAGSAGLIP---------  257 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p~-~F~~~v~~~-~~~~~~~~~vl~k~~~~w~~~~~-~~~~~~~g~~p---------  257 (352)
                      =|||+|.+||||++|..++...... --+  +.-. ...++..+++.+-.-..||+..- ....+..++|.         
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG--~~~~~~~~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~   85 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG--IFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNM   85 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS--CEEEEEEETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCcCCCCC--eEEEEEEECcEEEEEEecCccceeccchhhhcccccceEEEEEcccccc
Confidence            3788999999999999998654321 011  1111 12355667777666555554432 12233333332         


Q ss_pred             -------ChhHHHHHHHHhhhcccccccc
Q psy12793        258 -------SPELQEWRTACSTIDKTKHEQG  279 (352)
Q Consensus       258 -------~~~~~~~r~~~~~~~~~~~~~~  279 (352)
                             ..++.|.++....+..++..++
T Consensus        86 ~~~~~~~~~r~~e~~~~~~~il~~~~~~~  114 (221)
T d1azta2          86 VIREDNQTNRLQEALNLFKSIWNNRWLRT  114 (221)
T ss_dssp             BCTTTSCSBHHHHHHHHHHHHHTCGGGSS
T ss_pred             ccccccchHHHHHHHHHHHHHhcChhhCC
Confidence                   3456777776666665554444

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.54  E-value=0.11  Score=45.70  Aligned_cols=27  Identities=15%  Similarity=0.361  Sum_probs=23.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...+..+.|+||||+||+|+.+.+..-
T Consensus        23 i~~Gei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          23 IHEGEFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcC
Confidence            457889999999999999999988664

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.43  E-value=0.12  Score=43.12  Aligned_cols=23  Identities=9%  Similarity=0.283  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChhHHHHHHHhhCC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      |-|.|++||||+|+.+.|.+...
T Consensus         5 IgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           5 IGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            34679999999999999988754

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.28  E-value=0.077  Score=44.48  Aligned_cols=28  Identities=21%  Similarity=0.303  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      +++.|||-|+.||||+|+.+.|.+....
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            3689999999999999999999887655

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=89.21  E-value=0.082  Score=41.84  Aligned_cols=23  Identities=26%  Similarity=0.455  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      -|+|+|++||||+||.++|....
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999997653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=89.17  E-value=0.059  Score=42.90  Aligned_cols=32  Identities=28%  Similarity=0.330  Sum_probs=25.0

Q ss_pred             EeccCCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        181 VKLPSFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       181 ~~~p~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .++|.....-|+|+|.++|||++|.++|....
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34555566779999999999999999996643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.04  E-value=0.11  Score=46.69  Aligned_cols=25  Identities=28%  Similarity=0.598  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +.+-++|+||+||||+.+.+.|++.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhc
Confidence            3466788999999999999999885

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=0.12  Score=38.27  Aligned_cols=38  Identities=24%  Similarity=0.358  Sum_probs=33.7

Q ss_pred             ccccccCceEEEeeccCCCceEEEEcCCCCceeeecCChh
Q psy12793         88 GIAFQIGDILQIISKDDHNWWQARKDNVAGSAGLIPSPEL  127 (352)
Q Consensus        88 ~LsF~kGDIL~Vl~~~D~~WWqaR~~~~~g~~GlIPS~~v  127 (352)
                      +|+++.|+.|.|+...+++=|-+|  |..|.-|+|+..++
T Consensus        38 dL~vk~GE~ldVIr~t~~~k~LcR--N~~GkYGYV~~~~l   75 (77)
T d1ri9a_          38 DLQVKPGESLEVIQTTDDTKVLCR--NEEGKYGYVLRSYL   75 (77)
T ss_dssp             BCCCCTTCBCEEEEESSSSEEEEE--ETTTEEEEEEGGGS
T ss_pred             cCCcCCCCEEEEEEeCCCCeEEEE--cCCCcEEEEEeeee
Confidence            699999999999999888889999  67899999997654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=88.96  E-value=0.13  Score=42.99  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .|+|+|+.||||+|+.++|...
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~   23 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRY   23 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            4788999999999999999864

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.90  E-value=0.1  Score=42.61  Aligned_cols=26  Identities=23%  Similarity=0.264  Sum_probs=22.4

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ..|+|-|+.||||+|+.+.|.+..++
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            36888899999999999999887654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.76  E-value=0.29  Score=39.39  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|+|.+||||++|.++|+...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.72  E-value=0.15  Score=42.08  Aligned_cols=24  Identities=13%  Similarity=0.304  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |-|+|+|++||||++|.++|+...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998743

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=88.66  E-value=0.16  Score=44.06  Aligned_cols=28  Identities=18%  Similarity=0.348  Sum_probs=22.6

Q ss_pred             cCCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        184 PSFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       184 p~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ++.....|+|+||+||||+|-..+|+..
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~   34 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKM   34 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3445567788999999999999888764

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=88.51  E-value=0.22  Score=39.28  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=19.6

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+|++||||++|.++|....
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            7889999999999999997654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.45  E-value=0.15  Score=45.11  Aligned_cols=27  Identities=26%  Similarity=0.349  Sum_probs=23.4

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...+..+.|+||||+||+|+.+.+..-
T Consensus        29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          29 IKDGEFLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHHcC
Confidence            456789999999999999999988763

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.44  E-value=0.13  Score=45.67  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      -.++|+||||+||+|+.+.+..-.
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCChHHHHHHHHHcCC
Confidence            477899999999999999887643

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=88.38  E-value=0.1  Score=41.85  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|+|++||||+||.++|..+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48899999999999999998753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.36  E-value=0.24  Score=39.75  Aligned_cols=21  Identities=33%  Similarity=0.732  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++.++++..
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999999874

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=88.36  E-value=0.14  Score=47.55  Aligned_cols=26  Identities=23%  Similarity=0.581  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ..-|+++||+||||+++.++|++...
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhcc
Confidence            34588899999999999999987643

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=88.33  E-value=0.14  Score=40.29  Aligned_cols=24  Identities=21%  Similarity=0.404  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      -|+|+|++||||+||.++|....+
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~~~   26 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGREA   26 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            378999999999999999987654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.18  E-value=0.14  Score=42.77  Aligned_cols=22  Identities=18%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++|.||+|+||+++...++++
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHH
Confidence            4889999999999999988765

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.78  E-value=0.15  Score=45.08  Aligned_cols=28  Identities=21%  Similarity=0.375  Sum_probs=23.7

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+..+.|+|||||||+|+.+.|....
T Consensus        37 i~~Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          37 LRPGEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence            3567899999999999999999887643

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.67  E-value=0.16  Score=42.70  Aligned_cols=22  Identities=18%  Similarity=0.492  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++|.||+|+||+++...++++
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHHHH
Confidence            4788999999999999988764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.62  E-value=0.16  Score=40.70  Aligned_cols=21  Identities=14%  Similarity=0.422  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|.+||||++|.++|+..
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            788999999999999999864

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=87.39  E-value=0.16  Score=44.78  Aligned_cols=27  Identities=11%  Similarity=0.348  Sum_probs=23.4

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+|||||||+|+.+.|....
T Consensus        27 ~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          27 KQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            467899999999999999999887753

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.32  E-value=0.17  Score=40.37  Aligned_cols=21  Identities=29%  Similarity=0.648  Sum_probs=19.3

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|.+||||++|.++++..
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999999874

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.22  E-value=0.21  Score=42.39  Aligned_cols=27  Identities=22%  Similarity=0.364  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      ++++|||-|+.||||+|+.++|.+..-
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            578999999999999999999987643

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=87.21  E-value=0.21  Score=42.40  Aligned_cols=27  Identities=19%  Similarity=0.260  Sum_probs=22.9

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...+..|.|.|.|||||+||.+.|...
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            345778999999999999999998754

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.14  E-value=0.25  Score=39.49  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+|.+||||++|.+++....
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCcCHHHHHHHHhCCc
Confidence            6889999999999999998753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.12  E-value=0.33  Score=39.48  Aligned_cols=84  Identities=15%  Similarity=0.232  Sum_probs=43.7

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCcccccccc----ccccce--eEEEeecCCcchhhhhccCC-CCCcccc------
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKYAYPVPQF----ITVCSV--MFQIISKDDHNWWQARKDNV-AGSAGLI------  256 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F~~~v~~~----~~~~~~--~~~vl~k~~~~w~~~~~~~~-~~~~g~~------  256 (352)
                      |+|+|.+||||++|..+++.. ++..+...+...    ....+.  .+++.+-...++...-+... .+..++|      
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t   91 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVV   91 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETT
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeeccccc
Confidence            788999999999999998873 344333222211    122222  34455444444433222222 3332322      


Q ss_pred             CChhHHHHHHHHhhhccc
Q psy12793        257 PSPELQEWRTACSTIDKT  274 (352)
Q Consensus       257 p~~~~~~~r~~~~~~~~~  274 (352)
                      -..||++.+....+..+.
T Consensus        92 ~~~Sf~~~~~~~~~~~~~  109 (185)
T d2atxa1          92 NPASFQNVKEEWVPELKE  109 (185)
T ss_dssp             CHHHHHHHHHTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHh
Confidence            235677666555555543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.09  E-value=0.17  Score=40.27  Aligned_cols=21  Identities=24%  Similarity=0.618  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |||+|.+||||+++.++++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999999874

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=86.94  E-value=0.18  Score=44.56  Aligned_cols=27  Identities=15%  Similarity=0.183  Sum_probs=22.9

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...+..+.|+|||||||+|+.+.+..-
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          28 VPAGQIYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             ECSSCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            456789999999999999999877653

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=86.93  E-value=0.074  Score=47.01  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      .++..||+|+|||||+||.+.|..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC
T ss_pred             ccceEEEECCCCccHHHHHHhhcc
Confidence            357889999999999999999964

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.84  E-value=0.2  Score=43.89  Aligned_cols=26  Identities=15%  Similarity=0.280  Sum_probs=22.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      ...+-.+.|+|||||||+|+.+.+..
T Consensus        28 i~~Ge~~~iiG~sGsGKSTLl~~i~g   53 (230)
T d1l2ta_          28 IKEGEFVSIMGPSGSGKSTMLNIIGC   53 (230)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTT
T ss_pred             EcCCCEEEEECCCCCCcchhhHhccC
Confidence            45688999999999999999986655

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.82  E-value=0.12  Score=44.14  Aligned_cols=29  Identities=17%  Similarity=0.274  Sum_probs=23.1

Q ss_pred             ccCCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        183 LPSFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       183 ~p~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .+...-.+++|.||+|+||++|.+.+.++
T Consensus        31 ~~~~~~n~l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          31 NLGSLYNPIFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             TTTTSCSSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CcCCCCCcEEEECCCCCcHHHHHHHHHHH
Confidence            33344467999999999999999888764

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=86.76  E-value=0.19  Score=44.11  Aligned_cols=27  Identities=19%  Similarity=0.234  Sum_probs=23.2

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...+..+.|+||||+||+|+.+.|...
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            356789999999999999999988664

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=86.75  E-value=0.19  Score=39.89  Aligned_cols=21  Identities=24%  Similarity=0.400  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||++|.++|...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678899999999999999774

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.66  E-value=0.26  Score=38.87  Aligned_cols=26  Identities=19%  Similarity=0.273  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .+++++|.||+|+||+++.-.++...
T Consensus        22 ~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          22 TGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999888753

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=86.63  E-value=0.21  Score=44.07  Aligned_cols=26  Identities=19%  Similarity=0.367  Sum_probs=22.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..+.|+||||+||+|+.+.+..-
T Consensus        27 ~~Ge~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          27 KDGEFMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCChHHHHHHHHhcC
Confidence            46789999999999999999988653

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.59  E-value=0.2  Score=44.94  Aligned_cols=28  Identities=18%  Similarity=0.336  Sum_probs=24.1

Q ss_pred             cCCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        184 PSFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       184 p~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ....+..+.|+||||+||+|+.+.+...
T Consensus        58 ~i~~Ge~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          58 NIEKGEMLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EECTTCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            3457889999999999999999988764

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=86.58  E-value=0.19  Score=44.49  Aligned_cols=27  Identities=26%  Similarity=0.359  Sum_probs=23.0

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...+..+.|+|||||||+|+.+.|...
T Consensus        38 i~~Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          38 IPAGKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhcc
Confidence            346789999999999999999888664

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.52  E-value=0.2  Score=40.24  Aligned_cols=21  Identities=24%  Similarity=0.588  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |||+|++||||+++.++++..
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999998864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=86.50  E-value=0.17  Score=48.31  Aligned_cols=24  Identities=29%  Similarity=0.621  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      +.-|+|+||+||||+.|.+.|++.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999884

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.48  E-value=0.19  Score=40.30  Aligned_cols=21  Identities=33%  Similarity=0.665  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |||+|.+||||++|.++++..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999999874

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.47  E-value=0.19  Score=40.01  Aligned_cols=90  Identities=13%  Similarity=0.257  Sum_probs=47.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHh-hCCCCcccccccc----ccccceeEEE--eecCCcchhh-hhccCCCCCcccc-----
Q psy12793        190 TLVLLGAHGVGRRHIKNTLIN-KFPDKYAYPVPQF----ITVCSVMFQI--ISKDDHNWWQ-ARKDNVAGSAGLI-----  256 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~-~~p~~F~~~v~~~----~~~~~~~~~v--l~k~~~~w~~-~~~~~~~~~~g~~-----  256 (352)
                      =|+|+|.+||||++|.++|+. .++..+...+...    ....+..+.+  .+-....... .+..-.....++|     
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~   85 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSV   85 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEET
T ss_pred             EEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhhccc
Confidence            378899999999999999876 3444332222211    1122333332  2222221111 1111123344433     


Q ss_pred             -CChhHHHHHHHHhhhcccccccc
Q psy12793        257 -PSPELQEWRTACSTIDKTKHEQG  279 (352)
Q Consensus       257 -p~~~~~~~r~~~~~~~~~~~~~~  279 (352)
                       -..||+.....+..+.+......
T Consensus        86 ~~~~s~~~~~~~~~~i~~~~~~~~  109 (167)
T d1xtqa1          86 TSIKSFEVIKVIHGKLLDMVGKVQ  109 (167)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             chhhhhhhhhhhhhhhhhcccccc
Confidence             56789988888887775444333

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.43  E-value=0.22  Score=40.76  Aligned_cols=23  Identities=26%  Similarity=0.586  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +|+|.|+.||||+|+.+.|.+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999888753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=86.42  E-value=0.21  Score=39.86  Aligned_cols=23  Identities=30%  Similarity=0.572  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      .|+|+|++||||+|+.++|+...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999998643

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.42  E-value=0.19  Score=40.02  Aligned_cols=21  Identities=24%  Similarity=0.555  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|.+||||++|.++++..
T Consensus         5 i~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999999863

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=86.33  E-value=0.19  Score=44.03  Aligned_cols=27  Identities=19%  Similarity=0.400  Sum_probs=23.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.+....
T Consensus        30 ~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          30 PRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            468899999999999999999887644

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.27  E-value=0.21  Score=39.85  Aligned_cols=21  Identities=29%  Similarity=0.738  Sum_probs=19.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||++|.++++..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            788999999999999999863

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.26  E-value=0.18  Score=40.81  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=18.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||++|.++|+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            778999999999999999863

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.16  E-value=0.2  Score=40.11  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|.+||||++|.++++..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999999874

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=86.15  E-value=0.23  Score=42.63  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++.|+|+||+||||+|-..+|+..
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~   33 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALY   33 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4567888999999999999999764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.14  E-value=0.22  Score=39.73  Aligned_cols=21  Identities=33%  Similarity=0.635  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |||+|.+||||++|.++++..
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788899999999999999874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.08  E-value=0.22  Score=40.10  Aligned_cols=21  Identities=29%  Similarity=0.672  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||++|.++++..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999999774

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.93  E-value=0.15  Score=42.92  Aligned_cols=22  Identities=14%  Similarity=0.389  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++|.||+|+||+++.+.+++.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHH
Confidence            3455699999999999999875

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.86  E-value=0.28  Score=41.21  Aligned_cols=28  Identities=21%  Similarity=0.435  Sum_probs=24.6

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFPDK  215 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p~~  215 (352)
                      .+.|||-|+-||||+|+.+.|.+..+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~   29 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW   29 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            4689999999999999999999887653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=85.72  E-value=0.2  Score=39.63  Aligned_cols=22  Identities=14%  Similarity=0.365  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      -|+|+|.+||||+++.++|...
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4778899999999999999874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.71  E-value=0.24  Score=39.14  Aligned_cols=121  Identities=9%  Similarity=0.123  Sum_probs=60.4

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCcccccccc-------ccccceeEEEeecCCc-chhhhhccCC-CCCcccc----
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKYAYPVPQF-------ITVCSVMFQIISKDDH-NWWQARKDNV-AGSAGLI----  256 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F~~~v~~~-------~~~~~~~~~vl~k~~~-~w~~~~~~~~-~~~~g~~----  256 (352)
                      |+|+|.+||||++|..+++.. ++..+.......       ...+...+.+..-... ..+.....-+ .+..++|    
T Consensus         5 v~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d   84 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYD   84 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEE
Confidence            788999999999999999863 343332222111       1122233333322111 1111111111 3444554    


Q ss_pred             --CChhHHHHHHHHhhhccccccccccccccCCccccccccCCCCCCCCcCCcceEEecHHHHHHHHHcCcE
Q psy12793        257 --PSPELQEWRTACSTIDKTKHEQGIYSSFSLPFSVYRRDTTRSPRSDEENGRAYYFISHDEMMSDIAANQY  326 (352)
Q Consensus       257 --p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~r~~~~~e~~~~~~~~~~~~~~~~~~~~~~~  326 (352)
                        -..||++.+.....+.+....++..++-.+      |+.      +-.+-++   |+.++.+.+++...+
T Consensus        85 ~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvg------nK~------Dl~~~~~---v~~~~~~~~~~~~~~  141 (165)
T d1z06a1          85 MTNMASFHSLPAWIEECKQHLLANDIPRILVG------NKC------DLRSAIQ---VPTDLAQKFADTHSM  141 (165)
T ss_dssp             TTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEE------ECT------TCGGGCC---SCHHHHHHHHHHTTC
T ss_pred             eehhhhhhhhhhhhHHHHhhccCCCCeEEEEe------ccc------cchhccc---hhHHHHHHHHHHCCC
Confidence              556788777766666554444444322222      111      1001111   688888888887754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.71  E-value=0.23  Score=39.53  Aligned_cols=20  Identities=30%  Similarity=0.441  Sum_probs=18.6

Q ss_pred             EEEEcCCCCChhHHHHHHHh
Q psy12793        191 LVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~  210 (352)
                      |||+|.+||||++|..+++.
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68899999999999999987

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.70  E-value=0.22  Score=39.67  Aligned_cols=26  Identities=46%  Similarity=0.838  Sum_probs=21.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCc
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKY  216 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F  216 (352)
                      |+|+|.+||||+++.++|+.. ++..+
T Consensus         6 i~viG~~~vGKTsli~~l~~~~~~~~~   32 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQNHFVDEY   32 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCCCCCSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCCCCCcc
Confidence            788899999999999999874 34433

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.59  E-value=0.24  Score=39.56  Aligned_cols=26  Identities=31%  Similarity=0.525  Sum_probs=20.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCc
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKY  216 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F  216 (352)
                      |+|+|.+||||++|..+|+.. +++.+
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~f~~~~   35 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQFHEFQ   35 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCTTC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCccc
Confidence            678899999999999999863 34433

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.56  E-value=0.22  Score=40.06  Aligned_cols=26  Identities=27%  Similarity=0.552  Sum_probs=21.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCc
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKY  216 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F  216 (352)
                      |||+|.+||||++|..+++.. +++.+
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~~f~~~~   31 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKDQFPEVY   31 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCCc
Confidence            678899999999999999874 34444

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.40  E-value=0.24  Score=41.27  Aligned_cols=22  Identities=23%  Similarity=0.443  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++|.||+|+||+++...++++
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            3778999999999999999875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.37  E-value=0.22  Score=41.92  Aligned_cols=23  Identities=26%  Similarity=0.527  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhh
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..++|.||+|+||+++...++++
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHh
Confidence            34889999999999999988875

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=85.32  E-value=0.19  Score=44.13  Aligned_cols=27  Identities=19%  Similarity=0.295  Sum_probs=23.6

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...+-.+.|+||||+||+|+.+.+..-
T Consensus        23 i~~Ge~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          23 VESGEYFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             ECTTCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            456889999999999999999988764

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.30  E-value=0.23  Score=39.52  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .|+|+|.+||||+||.++|...
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3788999999999999999874

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.22  E-value=0.24  Score=39.35  Aligned_cols=21  Identities=24%  Similarity=0.637  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+++|.+||||+++.++++..
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999999874

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.10  E-value=0.85  Score=36.24  Aligned_cols=22  Identities=23%  Similarity=0.330  Sum_probs=19.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |||+|.+||||++|..++....
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7889999999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.98  E-value=0.25  Score=39.05  Aligned_cols=26  Identities=31%  Similarity=0.704  Sum_probs=20.9

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCc
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKY  216 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F  216 (352)
                      |+|+|.+||||++|.++++.. ++..+
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~~~~~~~   29 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYDSFDNTY   29 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCcc
Confidence            688899999999999999863 34433

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.97  E-value=0.24  Score=39.81  Aligned_cols=22  Identities=32%  Similarity=0.637  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      =|+|+|.+||||++|.++++..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3788999999999999999863

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=84.96  E-value=0.27  Score=39.44  Aligned_cols=21  Identities=19%  Similarity=0.597  Sum_probs=18.8

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |||+|.+||||++|.++++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999998763

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=84.78  E-value=0.32  Score=41.82  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .++.|.|+||+||||+|-..+|+..
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~   29 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRY   29 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4577888999999999999999764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.73  E-value=0.25  Score=40.39  Aligned_cols=82  Identities=10%  Similarity=0.195  Sum_probs=43.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCcccccccc----ccc--cceeEEEeecCCcchhhhhcc-CCCCCcccc------
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKYAYPVPQF----ITV--CSVMFQIISKDDHNWWQARKD-NVAGSAGLI------  256 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F~~~v~~~----~~~--~~~~~~vl~k~~~~w~~~~~~-~~~~~~g~~------  256 (352)
                      |||+|.+||||++|..+++.. ++..+...+...    ...  +...+++.+-...+-..+-+. ...+..|+|      
T Consensus         6 vvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~   85 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVV   85 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETT
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecccccc
Confidence            788999999999999999874 343332222111    112  233455554443332222221 122333322      


Q ss_pred             CChhHHHHHHHHhhhc
Q psy12793        257 PSPELQEWRTACSTID  272 (352)
Q Consensus       257 p~~~~~~~r~~~~~~~  272 (352)
                      -..||+..++......
T Consensus        86 ~~~Sf~~~~~~~~~~~  101 (191)
T d2ngra_          86 SPSSFENVKEKWVPEI  101 (191)
T ss_dssp             CHHHHHHHHHTHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            4567888776555544

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.65  E-value=0.26  Score=39.42  Aligned_cols=21  Identities=24%  Similarity=0.640  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|.+||||+++.++++..
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999999864

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.44  E-value=0.29  Score=38.90  Aligned_cols=91  Identities=19%  Similarity=0.358  Sum_probs=46.3

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCcccccccc----cccccee--EEEeecCCcchhhhhccCC-CCCcc------cc
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKYAYPVPQF----ITVCSVM--FQIISKDDHNWWQARKDNV-AGSAG------LI  256 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F~~~v~~~----~~~~~~~--~~vl~k~~~~w~~~~~~~~-~~~~g------~~  256 (352)
                      |||+|.+||||+++.++++.. +++.+...+...    ....+..  +++.+-....-++.-+.-+ .+..+      +-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~   85 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSIT   85 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETT
T ss_pred             EEEECCCCCCHHHHHHHHHcCCCCCccCCccccccceeEEeeeeEEEeccccccCcccccccccccccccceeEEeeecc
Confidence            788999999999999999874 344332222211    1112222  2222222111111111111 11111      22


Q ss_pred             CChhHHHHHHHHhhhcccccccccc
Q psy12793        257 PSPELQEWRTACSTIDKTKHEQGIY  281 (352)
Q Consensus       257 p~~~~~~~r~~~~~~~~~~~~~~~~  281 (352)
                      -..||++.......+.+....+...
T Consensus        86 ~~~sf~~~~~~~~~~~~~~~~~~~p  110 (167)
T d1c1ya_          86 AQSTFNDLQDLREQILRVKDTEDVP  110 (167)
T ss_dssp             CHHHHHTHHHHHHHHHHHHCCSCCC
T ss_pred             chhhhHhHHHHHHHHHHhcCCCCCe
Confidence            5578888888887777655555543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=84.44  E-value=0.27  Score=42.66  Aligned_cols=22  Identities=18%  Similarity=0.534  Sum_probs=19.1

Q ss_pred             CcEEEEEcCCCCChhHHHHHHH
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      .++-||+||+||||+++.+.+.
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHH
Confidence            4588999999999999998773

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.36  E-value=0.26  Score=39.78  Aligned_cols=18  Identities=28%  Similarity=0.551  Sum_probs=17.1

Q ss_pred             EEEEcCCCCChhHHHHHH
Q psy12793        191 LVLLGAHGVGRRHIKNTL  208 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L  208 (352)
                      |||+|.+||||++|..++
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            688999999999999999

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.27  E-value=0.27  Score=39.97  Aligned_cols=26  Identities=23%  Similarity=0.686  Sum_probs=21.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCc
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKY  216 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F  216 (352)
                      |||+|.+||||++|..+++.. ++..+
T Consensus         5 ivliG~~~vGKTsli~r~~~~~f~~~~   31 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDCFPENY   31 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCCCSSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCCcc
Confidence            688999999999999999874 44433

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.22  E-value=0.3  Score=39.51  Aligned_cols=21  Identities=38%  Similarity=0.825  Sum_probs=19.1

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|.+||||+++.++++..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999999873

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=84.19  E-value=0.26  Score=42.75  Aligned_cols=29  Identities=17%  Similarity=0.311  Sum_probs=24.5

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ..+..+.|+||||+||+|+.+.|....|.
T Consensus        23 ~~Gei~~iiG~nGaGKSTLl~~l~Gl~~~   51 (231)
T d1l7vc_          23 RAGEILHLVGPNGAGKSTLLARMAGMTSG   51 (231)
T ss_dssp             ETTCEEECBCCTTSSHHHHHHHHHTSCCC
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence            46889999999999999999988775443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=84.07  E-value=0.29  Score=42.57  Aligned_cols=24  Identities=13%  Similarity=0.277  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +-|+|.||+|+||+++.+.++.+.
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhcc
Confidence            458889999999999999998763

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=84.00  E-value=0.37  Score=42.33  Aligned_cols=25  Identities=16%  Similarity=0.458  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+-++|.||+|+||+++.+.++.+
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHH
Confidence            3467889999999999999999875

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.91  E-value=0.29  Score=43.11  Aligned_cols=27  Identities=19%  Similarity=0.421  Sum_probs=23.3

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+.|+||||+||+|+.+.+....
T Consensus        28 ~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          28 NKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            467899999999999999999887643

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.82  E-value=0.32  Score=38.67  Aligned_cols=26  Identities=35%  Similarity=0.623  Sum_probs=21.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCc
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKY  216 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F  216 (352)
                      |+|+|.+||||++|..+++.. +++.+
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~f~~~~   32 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSNDFAENK   32 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCCCTTC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCccc
Confidence            678899999999999999874 34433

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.80  E-value=0.32  Score=38.75  Aligned_cols=21  Identities=24%  Similarity=0.515  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|++||||+++.++++..
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999998874

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=83.69  E-value=0.37  Score=40.58  Aligned_cols=25  Identities=16%  Similarity=0.402  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      +++|.|+|+.||||+|+.+.|.+.+
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4678999999999999999998764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=83.69  E-value=0.2  Score=44.32  Aligned_cols=28  Identities=14%  Similarity=0.215  Sum_probs=24.1

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ...+-.+.|+||||+||+|+.+.+..-.
T Consensus        28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          28 IENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             ECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            4567899999999999999999887743

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.63  E-value=0.43  Score=42.67  Aligned_cols=23  Identities=13%  Similarity=0.413  Sum_probs=19.6

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHH
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTL  208 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L  208 (352)
                      +...+-||+||+|+||+++...+
T Consensus        23 ~~~~l~~i~G~NGsGKS~ileAi   45 (427)
T d1w1wa_          23 GESNFTSIIGPNGSGKSNMMDAI   45 (427)
T ss_dssp             TTCSEEEEECSTTSSHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHH
Confidence            33557889999999999999987

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.48  E-value=0.67  Score=37.58  Aligned_cols=23  Identities=17%  Similarity=0.317  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      -|+|+|.+||||++|..+++...
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            37889999999999999998854

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=83.44  E-value=0.43  Score=41.17  Aligned_cols=24  Identities=21%  Similarity=0.480  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...|+|+||+||||+|-..+|+..
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~   32 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQ   32 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            356778999999999999999764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.40  E-value=0.33  Score=38.99  Aligned_cols=22  Identities=32%  Similarity=0.667  Sum_probs=19.5

Q ss_pred             EEEEcCCCCChhHHHHHHHhhC
Q psy12793        191 LVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      |+|+|.+||||++|.+++....
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCc
Confidence            7889999999999999998654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.20  E-value=0.32  Score=39.92  Aligned_cols=26  Identities=27%  Similarity=0.675  Sum_probs=21.0

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCc
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKY  216 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F  216 (352)
                      |||+|+.||||++|.++++.. ++..+
T Consensus         9 ivvvG~~~vGKTsli~~l~~~~~~~~~   35 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDDTYTNDY   35 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCCCCTTC
T ss_pred             EEEECCCCcCHHHHHHHHhhCCCCCCc
Confidence            788999999999999999864 34433

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=83.11  E-value=0.3  Score=38.87  Aligned_cols=22  Identities=23%  Similarity=0.520  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      -|+|+|++||||++|.+++...
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4788999999999999999664

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.06  E-value=0.37  Score=42.65  Aligned_cols=27  Identities=11%  Similarity=0.246  Sum_probs=23.3

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...+..+.|+||||+||+|+.+.+..-
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence            456889999999999999999988653

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.91  E-value=0.36  Score=38.76  Aligned_cols=21  Identities=19%  Similarity=0.589  Sum_probs=19.2

Q ss_pred             EEEEcCCCCChhHHHHHHHhh
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      |+|+|.+||||+++.++|+..
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            788999999999999999874

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=82.83  E-value=0.19  Score=40.37  Aligned_cols=22  Identities=23%  Similarity=0.377  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCChhHHHHHHHhh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      -|||+|++||||+++.+++...
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4788999999999999999753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=82.73  E-value=0.33  Score=44.28  Aligned_cols=29  Identities=17%  Similarity=0.457  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPDK  215 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~~  215 (352)
                      .++.|+++||.||||+|+.+.|+...|..
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i~~~  193 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKE  193 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhcccc
Confidence            35668999999999999999999877654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=82.73  E-value=0.43  Score=40.78  Aligned_cols=25  Identities=32%  Similarity=0.594  Sum_probs=21.5

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      .+..++|+|++||||+++...|+..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHH
Confidence            4557899999999999999988774

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=82.70  E-value=0.23  Score=44.02  Aligned_cols=27  Identities=22%  Similarity=0.299  Sum_probs=22.4

Q ss_pred             CCCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        185 SFKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       185 ~~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ...+..+.|+|||||||+|+.+.|...
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHhc
Confidence            346789999999999999998877653

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.36  E-value=0.4  Score=38.18  Aligned_cols=25  Identities=28%  Similarity=0.356  Sum_probs=20.9

Q ss_pred             EEEEcCCCCChhHHHHHHHh-hCCCC
Q psy12793        191 LVLLGAHGVGRRHIKNTLIN-KFPDK  215 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~-~~p~~  215 (352)
                      |||+|..||||+++..++.. .+|..
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~~~t~   30 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIHEAGT   30 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHSCCC
T ss_pred             EEEECCCCCCHHHHHHHHhhCCCCCc
Confidence            78899999999999999976 45543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=82.14  E-value=0.25  Score=39.83  Aligned_cols=21  Identities=29%  Similarity=0.510  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCChhHHHHHHHh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      -|+|+|++||||++|.+++..
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478899999999999999854

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=81.91  E-value=0.4  Score=38.40  Aligned_cols=23  Identities=26%  Similarity=0.533  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCChhHHHHHHHhhC
Q psy12793        190 TLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      -|+|+|.+||||+||.++|+...
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47888999999999999998753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=81.75  E-value=0.43  Score=41.68  Aligned_cols=27  Identities=15%  Similarity=0.290  Sum_probs=23.2

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      ..+..+-|+||||+||+|+.+.|....
T Consensus        26 ~~Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          26 EEGEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            467899999999999999999887643

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=81.74  E-value=0.63  Score=40.48  Aligned_cols=26  Identities=27%  Similarity=0.567  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCChhHHHHHHHhhCC
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLINKFP  213 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~~~~p  213 (352)
                      .+-|+|.||+|+||+++.+.++++.-
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcC
Confidence            45689999999999999999988653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.37  E-value=0.79  Score=39.75  Aligned_cols=24  Identities=29%  Similarity=0.577  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCChhHHHHHHHhhC
Q psy12793        189 KTLVLLGAHGVGRRHIKNTLINKF  212 (352)
Q Consensus       189 r~iVL~GPsG~gk~tl~~~L~~~~  212 (352)
                      -.|+|+|.+||||+++.+.|+.+.
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCcHHHHHHHHhCCC
Confidence            468899999999999999999764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=81.30  E-value=0.5  Score=42.11  Aligned_cols=26  Identities=27%  Similarity=0.503  Sum_probs=21.9

Q ss_pred             CCCcEEEEEcCCCCChhHHHHHHHhh
Q psy12793        186 FKRKTLVLLGAHGVGRRHIKNTLINK  211 (352)
Q Consensus       186 ~~~r~iVL~GPsG~gk~tl~~~L~~~  211 (352)
                      ..+..++|+|++||||+++...|+..
T Consensus        37 ~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          37 RRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CccCCcEEECCCCCcHHHHHHHHHHH
Confidence            34567889999999999999988774

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=81.26  E-value=0.44  Score=38.63  Aligned_cols=21  Identities=19%  Similarity=0.359  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCChhHHHHHHHh
Q psy12793        190 TLVLLGAHGVGRRHIKNTLIN  210 (352)
Q Consensus       190 ~iVL~GPsG~gk~tl~~~L~~  210 (352)
                      +|-|.|++||||+|+.+.|.+
T Consensus         5 IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           5 IIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            344789999999999998854

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.10  E-value=0.6  Score=40.53  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ..+-++|.||+|+||+++.+.++...-.
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~~   64 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETGA   64 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhCC
Confidence            3466889999999999999999886433

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.69  E-value=0.24  Score=39.82  Aligned_cols=26  Identities=35%  Similarity=0.663  Sum_probs=18.7

Q ss_pred             EEEEcCCCCChhHHHHHHHhh-CCCCc
Q psy12793        191 LVLLGAHGVGRRHIKNTLINK-FPDKY  216 (352)
Q Consensus       191 iVL~GPsG~gk~tl~~~L~~~-~p~~F  216 (352)
                      |+|+|++||||++|.++++.. +++.+
T Consensus         6 i~vvG~~~vGKTsli~~~~~~~f~~~~   32 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTGEFEKKY   32 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-----CCE
T ss_pred             EEEECCCCcCHHHHHHHHHhCCCCccc
Confidence            778899999999999998764 34433

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.38  E-value=0.55  Score=41.05  Aligned_cols=28  Identities=18%  Similarity=0.430  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCChhHHHHHHHhhCCC
Q psy12793        187 KRKTLVLLGAHGVGRRHIKNTLINKFPD  214 (352)
Q Consensus       187 ~~r~iVL~GPsG~gk~tl~~~L~~~~p~  214 (352)
                      ..+-|+|.||+|+||+++.+.++.+...
T Consensus        40 ~~~giLL~Gp~GtGKT~l~~ala~~~~~   67 (265)
T d1r7ra3          40 PSKGVLFYGPPGCGKTLLAKAIANECQA   67 (265)
T ss_dssp             CCCEEEEBCCTTSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCcchhHHHHHHHHhCC
Confidence            3466889999999999999999887543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=80.17  E-value=0.11  Score=40.88  Aligned_cols=22  Identities=18%  Similarity=0.397  Sum_probs=19.2

Q ss_pred             CcEEEEEcCCCCChhHHHHHHH
Q psy12793        188 RKTLVLLGAHGVGRRHIKNTLI  209 (352)
Q Consensus       188 ~r~iVL~GPsG~gk~tl~~~L~  209 (352)
                      ..+.||+|++||||+|+.+.+.
T Consensus        24 ~~~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          24 ELVTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHHHSCCSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4577889999999999999885