Psyllid ID: psy12819

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-----
Protein Sequence
METFLPQDGSKTESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRDHNVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVRFDLYSRFELSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYIL
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHEEEEEEccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHccccccccccEEEEcccEEEEEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHEEEEEEEccccccccHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHcccccEEEcccEEEEHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccHHccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccHHHHHHHHHHHcHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHcHcHHHHHHHHHHHHHHcEEEccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcHccHHEHHHHHcHHHEEEEEEHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcHcHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
metflpqdgsktesnnigkdgETLTHLLKASLgtgilsmpyafrnagltGGIFLTVLVAVICTHCSYILVQCGHVlyrrtkvtsmsfadIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILlswvpnlkslaPVSMVANLLMGTGLGITFYYIVWDlhkpmempqiadistmpTFFSIVIFAIEAIGVVISFRTAtllsrpvisrelmigngrdhnvqcghvlyrrtkvtsmsfadIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILlswvpnlkslaPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQlnhldnkdywdpfkerklahpvtdgeTLTHLLKASLgtgilsmpyafrnagltGGIFLTVLVAVICTHCSyilgwrntdplaeSFTRYRNSIHALCVRFDLYSRFELSSKISIRISQVINHYTGTELDIRVYISAFLIPLILlswvpnlkslaPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQlnhldnkdywdpfkerklahpvtdgeTLTHLLKASLgtgilsmpyafrnagltGGIFLTVLVAVICTHCSYIL
Flexible Loop (DISEMBL)
metflpqdgsktesnnigkdgeTLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMigngrdhnvqCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKnfsksskisiRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLnhldnkdywdpFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVRFDLYSRFELSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLnhldnkdywdpFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYIL
Low Complexity Region (SEG)
METFLPQDGSKTESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRDHNVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTViiaknfsksskisirisQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVRFDLYSRFELSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYIL
Disordered region (IsUnstruct)
**********************TLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRDHNVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVRFDLYSRFELSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYI*
Disordered Region (DISOPRED)
**********************TLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRDHNVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLD***********KLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVRFDLYSRFELSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKER**********TLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYIL
Disordered Region (DISEMBL)
************ESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRDHNVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVRFDLYSRFELSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYIL
Disordered Region (DISPRO)
**TFLPQDGSKTESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRDHNVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVP*****************YWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVRFDLYSRFELSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
METFLPQDGSKTESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRDHNVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVRFDLYSRFELSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYIL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	675	2.2.26 [Sep-21-2011]
Q4KL91	522	Proton-coupled amino acid	N/A	N/A	0.345	0.446	0.346	3e-32
Q8CH36	500	Proton-coupled amino acid	yes	N/A	0.325	0.44	0.333	6e-31
Q7Z2H8	476	Proton-coupled amino acid	yes	N/A	0.342	0.485	0.303	1e-29
Q6YBV0	504	Proton-coupled amino acid	no	N/A	0.342	0.458	0.329	5e-29
Q8K4D3	475	Proton-coupled amino acid	no	N/A	0.346	0.492	0.329	5e-28
Q924A5	475	Proton-coupled amino acid	no	N/A	0.346	0.492	0.329	1e-26
Q8BHK3	478	Proton-coupled amino acid	no	N/A	0.318	0.449	0.326	3e-26
Q495M3	483	Proton-coupled amino acid	no	N/A	0.345	0.482	0.321	5e-25
Q8K415	481	Proton-coupled amino acid	no	N/A	0.317	0.444	0.327	3e-24
Q495N2	470	Proton-coupled amino acid	no	N/A	0.367	0.527	0.285	7e-22

>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1

 Score =  140 bits (353), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/248 (34%), Positives = 132/248 (53%), Gaps = 15/248 (6%)

Query: 19  KDG----ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGH 74
           KDG    +TL HLLK ++GTG+L +P A +NAG+  G    +   +I  HC  ILV+C H
Sbjct: 84  KDGLTFFQTLIHLLKGNIGTGLLGLPLAMKNAGVLLGPISLLFFGIISIHCMNILVRCSH 143

Query: 75  VLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAK 134
            L +R K  ++ ++D   +A   GP   +R+A F R  +   L +   G CSVY V +A+
Sbjct: 144 FLCQRYKKANLGYSDTVGLALEVGPGVLQRHASFGRNLVDWFLVVTQLGFCSVYFVFLAE 203

Query: 135 NFSKVINHYTGTE----------LDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLM 184
           N  +V   +  T+          LD+R+Y+ +FL  +I L ++ +LK+L+ +S  AN+ M
Sbjct: 204 NIKQVFEVFLETKLQQSEIGIWSLDLRIYMFSFLPLIIPLVFIRDLKNLSLLSFFANVSM 263

Query: 185 GTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPV 244
              L I + Y++ +L  P  +P      T P FF   IFA E IGVV+      +  +  
Sbjct: 264 AISLLIVYQYVIRNLSDPRTLPLGTSWKTYPLFFGTAIFAFEGIGVVLPLEN-RMRDKKD 322

Query: 245 ISRELMIG 252
            S+ L IG
Sbjct: 323 FSKALNIG 330

Xenopus laevis (taxid: 8355)

>sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1

 Score =  136 bits (342), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/240 (33%), Positives = 125/240 (52%), Gaps = 20/240 (8%)

Query: 22  ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTK 81
           +TL HLLK ++GTG+L +P A +NAG+  G    V + +I  HC +ILV+C H L +R K
Sbjct: 60  QTLVHLLKGNIGTGLLGLPLAIKNAGIVLGPISLVFIGIISVHCMHILVRCSHFLCQRFK 119

Query: 82  VTSMSFADIGEVAFAKGPAWG--RRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKV 139
            +++ ++D    A    P W   +R A + R  +   L +   G CSVY V +A+N  +V
Sbjct: 120 KSTLGYSDTVSFAMEASP-WSCLQRQAAWGRQVVDFFLVITQLGFCSVYIVFLAENVKQV 178

Query: 140 INHYTGT-----------------ELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANL 182
              + G+                  +D+RVY+  FL  +ILL ++  LK+L  +S +AN+
Sbjct: 179 HEGFLGSTPIVSNGSDLSHACERRSVDLRVYMLCFLPLIILLVFIRELKNLFVLSFLANI 238

Query: 183 LMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSR 242
            M   L I + Y+V ++  P  +P +A     P FF   +FA E IGVV+        S+
Sbjct: 239 SMAASLVIIYQYVVRNMPDPHNLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMRESK 298

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine.

Mus musculus (taxid: 10090)

>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 127/260 (48%), Gaps = 29/260 (11%)

Query: 6   PQDGSKTESNNIGKDG--------------ETLTHLLKASLGTGILSMPYAFRNAGLTGG 51
           P++      NN+   G              +TL HLLK ++GTG+L +P A +NAG+  G
Sbjct: 21  PEESPSEGLNNLSSPGSYQRFGQSNSTTWFQTLIHLLKGNIGTGLLGLPLAVKNAGIVMG 80

Query: 52  IFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGP-AWGRRYARFAR 110
               +++ ++  HC  ILV+C H   RR   + + + D         P +W R +A + R
Sbjct: 81  PISLLIIGIVAVHCMGILVKCAHHFCRRLNKSFVDYGDTVMYGLESSPCSWLRNHAHWGR 140

Query: 111 ICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGT--------------ELDIRVYISA 156
             +   L +   G C VY V +A NF +VI    GT               +D R+Y+ +
Sbjct: 141 RVVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVILTPTMDSRLYMLS 200

Query: 157 FLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPT 216
           FL  L+LL ++ NL++L+  S++AN+ M   L + + +IV  +  P  +P +A   T P 
Sbjct: 201 FLPFLVLLVFIRNLRALSIFSLLANITMLVSLVMIYQFIVQRIPDPSHLPLVAPWKTYPL 260

Query: 217 FFSIVIFAIEAIGVVISFRT 236
           FF   IF+ E IG+V+    
Sbjct: 261 FFGTAIFSFEGIGMVLPLEN 280

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Homo sapiens (taxid: 9606)

>sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1

 Score =  129 bits (325), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 131/252 (51%), Gaps = 21/252 (8%)

Query: 22  ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTK 81
           +TL HLLK ++GTG+L +P A +NAG+  G    V + +I  HC +ILV+C H L  R K
Sbjct: 63  QTLMHLLKGNIGTGLLGLPLAIKNAGIVLGPISLVFIGIISVHCMHILVRCSHFLCLRFK 122

Query: 82  VTSMSFADIGEVAFAKGPAWG--RRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKV 139
            +++ ++D    A    P W   ++ A + R  +   L +   G CSVY V +A+N  +V
Sbjct: 123 KSTLGYSDTVSFAMEVSP-WSCLQKQAAWGRSVVDFFLVITQLGFCSVYIVFLAENVKQV 181

Query: 140 ----------INHYTGT-------ELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANL 182
                     I++ T +        +D+R+Y+  FL  +ILL ++  LK+L  +S +AN+
Sbjct: 182 HEGFLESKVFISNSTNSSNPCERRSVDLRIYMLCFLPFIILLVFIRELKNLFVLSFLANV 241

Query: 183 LMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSR 242
            M   L I + Y+V ++  P  +P +A     P FF   +FA E IGVV+        S+
Sbjct: 242 SMAVSLVIIYQYVVRNMPDPHNLPIVAGWKKYPLFFGTAVFAFEGIGVVLPLENQMKESK 301

Query: 243 PVISRELMIGNG 254
               + L IG G
Sbjct: 302 R-FPQALNIGMG 312

Functions as a sodium-independent electroneutral transporter for tryptophan, proline and alanine. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1

 Score =  126 bits (317), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 126/249 (50%), Gaps = 15/249 (6%)

Query: 3   TFLPQDGSKTESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVIC 62
           +F P    +   N+     +TL HLLK ++GTG+L +P A +NAGL  G    +++ ++ 
Sbjct: 31  SFSPGSYQRLGENSSMTWFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVA 90

Query: 63  THCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPA-WGRRYARFARICILLGLFLAY 121
            HC  ILV+C H L RR     + + D         P+ W R ++ + R  +   L +  
Sbjct: 91  VHCMGILVKCAHHLCRRLNKPFLDYGDTVMYGLECSPSTWVRNHSHWGRRIVDFFLIVTQ 150

Query: 122 FGTCSVYTVIIAKNFSKVINHYTGT--------------ELDIRVYISAFLIPLILLSWV 167
            G C VY V +A NF +VI    GT               +D R+Y+ +FL  L+LLS++
Sbjct: 151 LGFCCVYFVFLADNFKQVIEAANGTTTNCNNNVTVIPTPTMDSRLYMLSFLPFLVLLSFI 210

Query: 168 PNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEA 227
            NL+ L+  S++AN+ M   L + + +IV  +  P  +P +A   T P FF   IFA E 
Sbjct: 211 RNLRVLSIFSLLANISMFVSLIMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFAFEG 270

Query: 228 IGVVISFRT 236
           IGVV+    
Sbjct: 271 IGVVLPLEN 279

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Mus musculus (taxid: 10090)

>sp|Q924A5|S36A1_RAT Proton-coupled amino acid transporter 1 OS=Rattus norvegicus GN=Slc36a1 PE=2 SV=1

 Score =  122 bits (305), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 125/249 (50%), Gaps = 15/249 (6%)

Query: 3   TFLPQDGSKTESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVIC 62
           +F P    +   N+     +TL HLLK ++GTG+L +P A +NAGL  G    +++ ++ 
Sbjct: 31  SFSPGSYQRLGENSSMTWFQTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVA 90

Query: 63  THCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPA-WGRRYARFARICILLGLFLAY 121
            HC  ILV+C H L RR     + + D         P+ W R ++ + R  +   L +  
Sbjct: 91  VHCMGILVKCAHHLCRRLNKPFLDYGDTVMYGLECSPSTWIRNHSHWGRRIVDFFLVVTQ 150

Query: 122 FGTCSVYTVIIAKNFSKVINHYTGT--------------ELDIRVYISAFLIPLILLSWV 167
            G C VY V +A NF +VI    GT               +D R+Y+  FL  L+LLS++
Sbjct: 151 LGFCCVYFVFLADNFKQVIEAANGTTTNCNNNETVILTPTMDSRLYMLTFLPFLVLLSFI 210

Query: 168 PNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEA 227
            NL+ L+  S++AN+ M   L + + +IV  +  P  +P +A   T P FF   IFA E 
Sbjct: 211 RNLRILSIFSLLANISMFVSLIMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFAFEG 270

Query: 228 IGVVISFRT 236
           IGVV+    
Sbjct: 271 IGVVLPLEN 279

Neutral amino acid/proton symporter. Probably involved in the efflux of lysosomal proteolysis products such as L-proline, L-alanine and glycine from the cell. May play a role in specifying sites for exocytosis in neurons.

Rattus norvegicus (taxid: 10116)

>sp|Q8BHK3|S36A2_MOUSE Proton-coupled amino acid transporter 2 OS=Mus musculus GN=Slc36a2 PE=1 SV=1

 Score =  120 bits (302), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 15/230 (6%)

Query: 22  ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTK 81
           +TL HL+K ++GTGIL +P A +NAG+  G    +++ +I  HC +ILV+C      R  
Sbjct: 53  QTLVHLVKGNMGTGILGLPLAVKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHRLN 112

Query: 82  VTSMSFADIGEVAFAKGP-AWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI 140
              M + D      A  P AW + +A + R  +   L +   G C VY V +A N  +V+
Sbjct: 113 KPFMDYGDTVMHGLAFSPNAWLQNHAHWGRRVVSFFLIVTQLGFCCVYIVFLADNLKQVV 172

Query: 141 NHYTGTE--------------LDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGT 186
                T               +D R+Y+ +FL  L LL +V NL+ L   S++AN+ M  
Sbjct: 173 EAVNSTTISCHKNETVVLTPTMDSRLYMLSFLPVLGLLVFVRNLRVLTIFSLLANISMLV 232

Query: 187 GLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRT 236
            L I   YI+ ++    ++P +A   T P FF   IF+ E+IGVV+    
Sbjct: 233 SLVIIAQYIIQEIPDASQLPLVASWKTYPLFFGTAIFSFESIGVVLPLEN 282

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids amino acids such as glycine, alanine and proline. Inhibited by sarcosine.

Mus musculus (taxid: 10090)

>sp|Q495M3|S36A2_HUMAN Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1

 Score =  116 bits (291), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/255 (32%), Positives = 122/255 (47%), Gaps = 22/255 (8%)

Query: 2   ETFLPQDGSKTESNNIGKDG-----ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTV 56
            TFL  D S +ES  + K       + L HL+K ++GTGIL +P A +NAG+  G    +
Sbjct: 35  STFL--DESPSESAGLKKTKGITVFQALIHLVKGNMGTGILGLPLAVKNAGILMGPLSLL 92

Query: 57  LVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGP-AWGRRYARFARICILL 115
           ++  I  HC +ILV+C     +R     M + D         P AW + +A + R  +  
Sbjct: 93  VMGFIACHCMHILVKCAQRFCKRLNKPFMDYGDTVMHGLEANPNAWLQNHAHWGRHIVSF 152

Query: 116 GLFLAYFGTCSVYTVIIAKNFSKVINHYTGTE--------------LDIRVYISAFLIPL 161
            L +   G C VY V +A N  +V+     T               +D R+Y+ +FL  L
Sbjct: 153 FLIITQLGFCCVYIVFLADNLKQVVEAVNSTTNNCYSNETVILTPTMDSRLYMLSFLPFL 212

Query: 162 ILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIV 221
           +LL  + NL+ L   SM+AN+ M   L I   YI  ++  P  +P +A   T P FF   
Sbjct: 213 VLLVLIRNLRILTIFSMLANISMLVSLVIIIQYITQEIPDPSRLPLVASWKTYPLFFGTA 272

Query: 222 IFAIEAIGVVISFRT 236
           IF+ E+IGVV+    
Sbjct: 273 IFSFESIGVVLPLEN 287

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids. Transports glycine and proline. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

>sp|Q8K415|S36A2_RAT Proton-coupled amino acid transporter 2 OS=Rattus norvegicus GN=Slc36a2 PE=1 SV=1

 Score =  114 bits (285), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 114/229 (49%), Gaps = 15/229 (6%)

Query: 22  ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTK 81
           +TL HL+K ++GTGIL +P A +NAG+  G    +++ +I  HC +ILV+C      R  
Sbjct: 56  QTLVHLVKGNMGTGILGLPLAVKNAGILMGPLSLLVMGLIACHCMHILVRCAQRFCHRLN 115

Query: 82  VTSMSFADIGEVAFAKGP-AWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI 140
              M + D      A  P  W + +A + R  +   L +   G C VY V +A N  +V+
Sbjct: 116 KPFMDYGDTVMHGLASSPNTWLQSHAHWGRHAVSFFLIVTQLGFCCVYIVFLADNLKQVV 175

Query: 141 NHYTGTEL--------------DIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGT 186
                T +              D R+Y+ AFL  L LL ++ NL+ L   S++AN+ M  
Sbjct: 176 EAVNSTTISCHKNETVVLTPTIDSRLYMLAFLPVLGLLVFIRNLRVLTIFSLLANVSMLV 235

Query: 187 GLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFR 235
            L I   YI+  +  P ++P +A   T P FF   IF+ E+IGVV+   
Sbjct: 236 SLVIIGQYIIQGIPDPSQLPLVASWKTYPLFFGTAIFSFESIGVVLPLE 284

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids amino acids such as glycine, alanine and proline. Inhibited by sarcosine. Inhibited by L-pipecolic acid, D-pipecolic acid and isonipecotic acid.

Rattus norvegicus (taxid: 10116)

>sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2

 Score =  106 bits (264), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 128/280 (45%), Gaps = 32/280 (11%)

Query: 22  ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTK 81
           +TL HLLK ++GTG+L +P A +NAGL  G    + + V+  HC  IL+ C   L +R +
Sbjct: 46  QTLIHLLKCNIGTGLLGLPLAIKNAGLLVGPVSLLAIGVLTVHCMVILLNCAQHLSQRLQ 105

Query: 82  VTSMSFADIGEVAFAKGP-AWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI 140
            T +++ +         P  W R +A + R  +   L +   G CSVY + +A N  +++
Sbjct: 106 KTFVNYGEATMYGLETCPNTWLRAHAVWGRYTVSFLLVITQLGFCSVYFMFMADNLQQMV 165

Query: 141 N--HYTGT------------ELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGT 186
              H T               LDIR Y+   L  LILL ++ NLK L+  S +AN+    
Sbjct: 166 EKAHVTSNICQPREILTLTPILDIRFYMLIILPFLILLVFIQNLKVLSVFSTLANITTLG 225

Query: 187 GLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVIS 246
            + + F YI+  +  P  +P +A+  T   FF   IF  E +G+V+  +           
Sbjct: 226 SMALIFEYIMEGIPYPSNLPLMANWKTFLLFFGTAIFTFEGVGMVLPLK----------- 274

Query: 247 RELMIGNGRDHNVQCGHVLYRRTKVTSMSFADIGEVAFAK 286
                 N   H  Q   VLY    +  + +  +G + + K
Sbjct: 275 ------NQMKHPQQFSFVLYLGMSIVIILYILLGTLGYMK 308

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	675
242022492	477	proton-coupled amino acid transporter, p	0.348	0.492	0.589	9e-79
66500029	468	PREDICTED: proton-coupled amino acid tra	0.349	0.504	0.546	1e-76
350418039	466	PREDICTED: proton-coupled amino acid tra	0.349	0.506	0.544	3e-76
380019408	468	PREDICTED: proton-coupled amino acid tra	0.349	0.504	0.542	4e-76
340715810	488	PREDICTED: proton-coupled amino acid tra	0.349	0.483	0.544	2e-75
307183803	472	Proton-coupled amino acid transporter 4	0.351	0.502	0.516	6e-75
383864394	469	PREDICTED: proton-coupled amino acid tra	0.348	0.501	0.538	3e-74
194747735	470	GF24657 [Drosophila ananassae] gi|190623	0.32	0.459	0.640	1e-73
195127029	470	GI12085 [Drosophila mojavensis] gi|19391	0.346	0.497	0.561	6e-73
195168059	435	GL17962 [Drosophila persimilis] gi|19410	0.348	0.540	0.544	2e-72

>gi|242022492|ref|XP_002431674.1| proton-coupled amino acid transporter, putative [Pediculus humanus corporis] gi|212516982|gb|EEB18936.1| proton-coupled amino acid transporter, putative [Pediculus humanus corporis]

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 155/263 (58%), Positives = 182/263 (69%), Gaps = 28/263 (10%)

Query: 1   METFLPQDGSKTESNNIGKDGE---------------------------TLTHLLKASLG 33
           METFLP DGS+ E     KDGE                           TLTHLLKASLG
Sbjct: 1   METFLPGDGSE-EYKITPKDGENGSRYKDKDYWDPFAVRKVADPTTDCDTLTHLLKASLG 59

Query: 34  TGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV 93
           TGIL+MP AFRN GLT GIF T+ VA +CT+CSY+LV+C HVLY RT+VTSMSFA++ E 
Sbjct: 60  TGILAMPDAFRNTGLTLGIFATIFVAFLCTYCSYLLVKCAHVLYHRTRVTSMSFAEVAEA 119

Query: 94  AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVY 153
           AF  GP   ++YA FA+  I  GL+L YFGTCSVYTVII KNF++V++H+TG ELD R  
Sbjct: 120 AFNSGPKPVQKYASFAKFIIQFGLWLTYFGTCSVYTVIIGKNFAQVVDHHTGEELDQRWI 179

Query: 154 ISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADIST 213
           I   L+PLILLSWVPNLK LAPVSMVAN+ MG GLGITFYY+VWDL    E+PQ+  I  
Sbjct: 180 IGGCLVPLILLSWVPNLKKLAPVSMVANIFMGVGLGITFYYLVWDLPPISEVPQVGSIDN 239

Query: 214 MPTFFSIVIFAIEAIGVVISFRT 236
            P FFS+ IFA+EAIGVV+    
Sbjct: 240 FPVFFSLTIFAMEAIGVVMPLEN 262

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66500029|ref|XP_396451.2| PREDICTED: proton-coupled amino acid transporter 4 [Apis mellifera]

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 148/271 (54%), Positives = 180/271 (66%), Gaps = 35/271 (12%)

Query: 1   METFLPQDGSKTES--------------------------------NNIGKDGETLTHLL 28
           M+TFLPQDGS  +                                 +N   DG+TLTHLL
Sbjct: 9   MDTFLPQDGSNAKDGVFKYKVQVAPQDMETGQGDGKSFDPFSERRVDNPTTDGDTLTHLL 68

Query: 29  KASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFA 88
           KA+LGTGILSMP AF+NAGL  GIF TVLVA +CTHC+YILV+C HVLY +T+ T MSFA
Sbjct: 69  KAALGTGILSMPIAFKNAGLVVGIFATVLVAFVCTHCAYILVKCAHVLYYKTRRTEMSFA 128

Query: 89  DIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYT---G 145
           D+ EVAFA GP WGR++++  R  I + LF  YFGTCSVYTVI+A NF+++I HY     
Sbjct: 129 DVAEVAFATGPQWGRKFSKPIRYLIQISLFATYFGTCSVYTVIVAANFNQIIKHYKEEGS 188

Query: 146 TELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEM 205
            E  +R+  +  LIP+ILLSW+PNLK LAPVSMVAN+ MGTGLGITFYY+VWD+     +
Sbjct: 189 GEFSLRLMATCLLIPMILLSWIPNLKYLAPVSMVANIFMGTGLGITFYYLVWDMPPITSV 248

Query: 206 PQIADISTMPTFFSIVIFAIEAIGVVISFRT 236
           P  A I   P FFSI IFA+EAIGVV+    
Sbjct: 249 PLFAPIEDFPRFFSITIFAMEAIGVVMPLEN 279

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418039|ref|XP_003491704.1| PREDICTED: proton-coupled amino acid transporter 4-like [Bombus impatiens]

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/270 (54%), Positives = 181/270 (67%), Gaps = 34/270 (12%)

Query: 1   METFLPQDGSKTES---------------------------------NNIGKDGETLTHL 27
           M+TFLPQDGS  +                                  +N   DG+TLTHL
Sbjct: 9   MDTFLPQDGSNAKDGVLSKYKVQVAPRDIEVGQGDGKSFDPFNERKVDNPTTDGDTLTHL 68

Query: 28  LKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSF 87
           LKA+LGTGILSMP AF+NAGL  G+F T+LVA +CTHC+YILV+C HVLY +T+ T MSF
Sbjct: 69  LKAALGTGILSMPIAFKNAGLVVGVFATILVAFVCTHCAYILVKCAHVLYYKTRRTEMSF 128

Query: 88  ADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTG-T 146
           AD+ EVAFA GP WGR++++  R  I + LF  YFGTCSVYTVI+A NF ++  HY G +
Sbjct: 129 ADVAEVAFATGPQWGRKFSKPIRYLIQISLFTTYFGTCSVYTVIVAANFDQISKHYYGES 188

Query: 147 ELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMP 206
           E DIR  I+A +IP++LLSWVPNLK LAPVSMVAN+ MG+GLGITFYY+V D+     +P
Sbjct: 189 EFDIRYMITALIIPMVLLSWVPNLKYLAPVSMVANIFMGSGLGITFYYLVTDMPSISSVP 248

Query: 207 QIADISTMPTFFSIVIFAIEAIGVVISFRT 236
             A I   P FFSI IFA+EAIGVV+    
Sbjct: 249 LFAPIQDFPRFFSITIFAMEAIGVVMPLEN 278

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019408|ref|XP_003693599.1| PREDICTED: proton-coupled amino acid transporter 4-like [Apis florea]

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 147/271 (54%), Positives = 180/271 (66%), Gaps = 35/271 (12%)

Query: 1   METFLPQDGSKTES--------------------------------NNIGKDGETLTHLL 28
           M+TFLPQDGS  +                                 +N   DG+TLTHLL
Sbjct: 9   MDTFLPQDGSNAKDGVFKYKVQVAPQDMETGQGDGKSFDPFSERRVDNPTTDGDTLTHLL 68

Query: 29  KASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFA 88
           KA+LGTGILSMP AF+NAGL  GIF TVLVA +CTHC+YILV+C HVLY +T+ T MSFA
Sbjct: 69  KAALGTGILSMPIAFKNAGLVVGIFATVLVAFVCTHCAYILVKCAHVLYYKTRRTEMSFA 128

Query: 89  DIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYT---G 145
           D+ EVAFA GP WGR++++  R  I + LF  YFGTCSVYTVI+A NF+++I +Y     
Sbjct: 129 DVAEVAFATGPQWGRKFSKPIRYLIQISLFATYFGTCSVYTVIVAANFNQIIKYYKEEGS 188

Query: 146 TELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEM 205
            E  +R+  +  LIP+ILLSW+PNLK LAPVSMVAN+ MGTGLGITFYY+VWD+     +
Sbjct: 189 DEFSLRLMATCLLIPMILLSWIPNLKYLAPVSMVANIFMGTGLGITFYYLVWDMPPITSV 248

Query: 206 PQIADISTMPTFFSIVIFAIEAIGVVISFRT 236
           P  A I   P FFSI IFA+EAIGVV+    
Sbjct: 249 PLFAPIENFPRFFSITIFAMEAIGVVMPLEN 279

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715810|ref|XP_003396401.1| PREDICTED: proton-coupled amino acid transporter 4-like [Bombus terrestris]

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 147/270 (54%), Positives = 180/270 (66%), Gaps = 34/270 (12%)

Query: 1   METFLPQDGSKTES---------------------------------NNIGKDGETLTHL 27
           M+TFLPQDGS  +                                  +N   DG+TLTHL
Sbjct: 9   MDTFLPQDGSNAKDGVLSKYKVQVAPRDIEVGQGDGKSFDPFNERKVDNPTTDGDTLTHL 68

Query: 28  LKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSF 87
           LKA+LGTGILSMP AF+NAGL  G+F TVLVA +CTHC+YILV+C HVLY +T+ T MSF
Sbjct: 69  LKAALGTGILSMPIAFKNAGLVIGVFATVLVAFVCTHCAYILVKCAHVLYYKTRRTEMSF 128

Query: 88  ADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTG-T 146
           AD+ EVAFA GP WGR++++  R  I + LF  YFGTCSVYTVI+A NF+++I HY   +
Sbjct: 129 ADVAEVAFATGPQWGRKFSKPIRYLIQISLFATYFGTCSVYTVIVAANFNQIIEHYHAES 188

Query: 147 ELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMP 206
           E  IR+  +  LIPLILLSW+PNLK LAPVSMVAN+ MG+GLGITFYY+V D+     +P
Sbjct: 189 EFSIRLIATCLLIPLILLSWIPNLKYLAPVSMVANIFMGSGLGITFYYLVRDMPSINSVP 248

Query: 207 QIADISTMPTFFSIVIFAIEAIGVVISFRT 236
             A I   P FFSI IFA+EAIGVV+    
Sbjct: 249 LFASIQDFPRFFSITIFAMEAIGVVMPLEN 278

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183803|gb|EFN70451.1| Proton-coupled amino acid transporter 4 [Camponotus floridanus]

 Score =  288 bits (738), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 140/271 (51%), Positives = 181/271 (66%), Gaps = 34/271 (12%)

Query: 1   METFLPQDGSKTES----------------------------------NNIGKDGETLTH 26
           ++TFLPQDGS  +                                   +N   D +TLTH
Sbjct: 11  LDTFLPQDGSNLKDGVLSAKYKVQVASRDVEAALADEKSFDPFAERKVDNPTTDCDTLTH 70

Query: 27  LLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMS 86
           LLKASLG+GIL+MP AF+NAGL  GIF T+LVA +CTHC+YILV+C H+LY +T+ T M 
Sbjct: 71  LLKASLGSGILAMPIAFKNAGLLLGIFATILVAFVCTHCAYILVKCAHLLYHKTRKTEMG 130

Query: 87  FADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGT 146
           FA++ EVAF KGP W R++A+ +R  I + LF+ YFGTCSVY VI+A NF ++I HY G+
Sbjct: 131 FAEVAEVAFDKGPQWARKFAKPSRHLIQISLFVTYFGTCSVYAVIVAANFQQIIEHYQGS 190

Query: 147 ELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMP 206
           E  +R+ I+  L+PL+LLSWVP+LK LAPVSMVAN+ MG GLGITFYY+VWD+     +P
Sbjct: 191 EYSLRLIIAYLLVPLVLLSWVPDLKYLAPVSMVANIFMGVGLGITFYYLVWDIPPLSSIP 250

Query: 207 QIADISTMPTFFSIVIFAIEAIGVVISFRTA 237
            I  I T P FFSI +FA+EAIGVV+    +
Sbjct: 251 LIGTIETFPQFFSITVFAMEAIGVVMPLENS 281

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864394|ref|XP_003707664.1| PREDICTED: proton-coupled amino acid transporter 4-like [Megachile rotundata]

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 146/271 (53%), Positives = 180/271 (66%), Gaps = 36/271 (13%)

Query: 1   METFLPQDGSKTES---------------------------------NNIGKDGETLTHL 27
           M+TFLPQDGS  +                                  +N   D +TLTHL
Sbjct: 9   MDTFLPQDGSNPKDGVLTKYKVQVASRDVETGQGDGKTFDPFSERRVDNPTTDCDTLTHL 68

Query: 28  LKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSF 87
           LKASLGTGILSMP AF+NAGL  G+F T+LVA +CTHC+YILV+C HVLY +T+ + MSF
Sbjct: 69  LKASLGTGILSMPVAFKNAGLLLGVFSTILVAFVCTHCAYILVKCAHVLYYKTRRSEMSF 128

Query: 88  ADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTE 147
           AD+ E AF+ GP WGR++A+  R  I + LF  YFGTCSVYTVI+A NF+++I+HY   E
Sbjct: 129 ADVAEAAFSTGPQWGRKFAKPIRYLIQISLFATYFGTCSVYTVIVATNFNQIIHHYKDAE 188

Query: 148 ---LDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPME 204
                +R+ I+  LIP+ILLS+VPNLK LAPVSMVAN+ MGTGLGITFYY+VWDL     
Sbjct: 189 TPDFSLRLMIACLLIPMILLSYVPNLKYLAPVSMVANIFMGTGLGITFYYLVWDLPSFNS 248

Query: 205 MPQIADISTMPTFFSIVIFAIEAIGVVISFR 235
           +P  A I   P FFSI IFA+EAIGVV+   
Sbjct: 249 VPLFASIEDFPKFFSITIFAMEAIGVVMPLE 279

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194747735|ref|XP_001956307.1| GF24657 [Drosophila ananassae] gi|190623589|gb|EDV39113.1| GF24657 [Drosophila ananassae]

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 139/217 (64%), Positives = 167/217 (76%), Gaps = 1/217 (0%)

Query: 20  DGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRR 79
           D ETLTHLLKASLGTGIL MP+AF  +GL  GIF T++ A ICTHCSY+LV+CGH LY R
Sbjct: 61  DNETLTHLLKASLGTGILGMPFAFMCSGLIMGIFATIMTAFICTHCSYVLVKCGHKLYYR 120

Query: 80  TKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKV 139
           T+ T M+FA+I E AF KGP W R +A  A+  IL GLFL YFGTCSVYTVI+A NF +V
Sbjct: 121 TRRTKMTFAEIAETAFQKGPKWCRGFAPVAKFSILFGLFLTYFGTCSVYTVIVASNFEQV 180

Query: 140 INHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDL 199
           I H+TGT + +R+ I A LIPLIL++WVPNLK LAPVSMVAN+ MG GL ITFYY+V DL
Sbjct: 181 IEHWTGTHVSLRLIICALLIPLILIAWVPNLKYLAPVSMVANVFMGLGLAITFYYLVQDL 240

Query: 200 HKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRT 236
             P+E  + + +ST+P FFSI IFA+EAIGVV+    
Sbjct: 241 -PPLEQREYSVMSTLPQFFSITIFAMEAIGVVMPLEN 276

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195127029|ref|XP_002007971.1| GI12085 [Drosophila mojavensis] gi|193919580|gb|EDW18447.1| GI12085 [Drosophila mojavensis]

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 146/260 (56%), Positives = 177/260 (68%), Gaps = 26/260 (10%)

Query: 1   METFLPQDGSKT-------------------------ESNNIGKDGETLTHLLKASLGTG 35
           ME FLP DG+                           E+ +   D ETLTHLLKASLGTG
Sbjct: 16  MEQFLPGDGTNKYKIQPRKSDAEQALANSVFDPFTMRENEHPTTDNETLTHLLKASLGTG 75

Query: 36  ILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAF 95
           IL MPYAF  +GL  GIF T+L A ICTHCSY+LV+CGH LY +T+ T M+FA+I E AF
Sbjct: 76  ILGMPYAFMYSGLVMGIFATILTAFICTHCSYVLVKCGHKLYYKTRRTKMTFAEIAEAAF 135

Query: 96  AKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYIS 155
            KGP   R +A  A+  IL GLFL YFGTCSVYTVI+AKNF +V+ H+TG +++ RV I 
Sbjct: 136 QKGPKSLRGFAPVAKFSILFGLFLTYFGTCSVYTVIVAKNFEQVLVHWTGRDIEPRVIIC 195

Query: 156 AFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMP 215
             L+PLIL++WVPNLK LAPVSMVAN+ MG GLGITFYY+V DL  P+E   +  +ST+P
Sbjct: 196 ILLVPLILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDL-PPIEERSLVTLSTLP 254

Query: 216 TFFSIVIFAIEAIGVVISFR 235
            FFSI IFA+EAIGVV+   
Sbjct: 255 AFFSITIFAMEAIGVVMPLE 274

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195168059|ref|XP_002024849.1| GL17962 [Drosophila persimilis] gi|194108279|gb|EDW30322.1| GL17962 [Drosophila persimilis]

 Score =  280 bits (717), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/261 (54%), Positives = 176/261 (67%), Gaps = 26/261 (9%)

Query: 1   METFLPQDGSKT-------------------------ESNNIGKDGETLTHLLKASLGTG 35
           ME FLP +G KT                         ++ +   D ETLTHLLKASLGTG
Sbjct: 16  MEQFLPGEGGKTYHIQPRKADNEQALGNNEFDPFAHRDNEHPTSDNETLTHLLKASLGTG 75

Query: 36  ILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAF 95
           IL MP AF  +G+  GIF T+  A +CTHCSY+LV+CGH LY +T+ T M+FA+I E AF
Sbjct: 76  ILGMPIAFMYSGIIMGIFATIFTAFVCTHCSYVLVKCGHKLYYKTRRTKMTFAEIAESAF 135

Query: 96  AKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYIS 155
            KGP W R +A  A+  IL GLFL YFGTCSVYTVI+AKNF ++I H+TGTE+  R+ I 
Sbjct: 136 QKGPKWSRGFAPVAKFSILFGLFLTYFGTCSVYTVIVAKNFEQLIEHWTGTEVSSRLLIC 195

Query: 156 AFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMP 215
           + L+PLIL++WVPNLK LAPVSMVAN+ MG GLGITFYY+  DL  P+E      + T+P
Sbjct: 196 SLLVPLILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLTQDL-PPLESRNYLVLGTLP 254

Query: 216 TFFSIVIFAIEAIGVVISFRT 236
           +FFSI IFA+EAIGVV+    
Sbjct: 255 SFFSITIFAMEAIGVVMPLEN 275

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	675
FB|FBgn0036007	500	path "pathetic" [Drosophila me	0.314	0.424	0.638	1.4e-72
FB|FBgn0032036	504	CG13384 [Drosophila melanogast	0.309	0.414	0.436	7.2e-43
FB|FBgn0033760	474	CG8785 [Drosophila melanogaste	0.314	0.447	0.429	2.5e-41
FB|FBgn0036116	465	CG7888 [Drosophila melanogaste	0.315	0.458	0.403	1e-37
FB|FBgn0035300	451	CG1139 [Drosophila melanogaste	0.322	0.483	0.376	4.8e-37
WB|WBGene00012804	455	Y43F4B.7 [Caenorhabditis elega	0.339	0.503	0.316	2.5e-30
UNIPROTKB|E7EW39	388	SLC36A1 "Proton-coupled amino	0.312	0.543	0.331	2.4e-29
UNIPROTKB|I3LUT9	476	SLC36A1 "Uncharacterized prote	0.312	0.443	0.340	3.6e-29
UNIPROTKB|E2RHF1	476	SLC36A1 "Uncharacterized prote	0.312	0.443	0.345	6.1e-29
MGI|MGI:2445299	475	Slc36a1 "solute carrier family	0.312	0.444	0.349	1.1e-28

FB|FBgn0036007 path "pathetic" [Drosophila melanogaster (taxid:7227)]

 Score = 704 (252.9 bits), Expect = 1.4e-72, Sum P(2) = 1.4e-72
 Identities = 136/213 (63%), Positives = 165/213 (77%)

Query:    20 DGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRR 79
             D ETLTHLLKASLGTGIL MP+AF  +GL  GIF T+  A ICTHCSY+LV+CGH LY R
Sbjct:    89 DNETLTHLLKASLGTGILGMPFAFMCSGLIMGIFSTIFTAFICTHCSYVLVKCGHKLYYR 148

Query:    80 TKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKV 139
             T+ T M+FA+I E AF KGP W R +A  A+  IL GLFL YFGTCSVYTVI+A NF ++
Sbjct:   149 TRRTKMTFAEIAEAAFQKGPKWCRGFAPVAKFSILFGLFLTYFGTCSVYTVIVASNFEQL 208

Query:   140 INHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDL 199
             I+++TGT + +R+ I   L+PLIL++WVPNLK LAPVSMVAN+ MG GLGITFYY+V DL
Sbjct:   209 ISYWTGTAVSLRMLICIMLVPLILIAWVPNLKYLAPVSMVANVFMGLGLGITFYYLVQDL 268

Query:   200 HKPMEMPQIADISTMPTFFSIVIFAIEAIGVVI 232
               P+E  +    ST+P FFSI IFA+EAIGVV+
Sbjct:   269 -PPVEERESVVWSTLPQFFSITIFAMEAIGVVM 300

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0032036 CG13384 [Drosophila melanogaster (taxid:7227)]

 Score = 454 (164.9 bits), Expect = 7.2e-43, P = 7.2e-43
 Identities = 92/211 (43%), Positives = 134/211 (63%)

Query:    22 ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTK 81
             +TL HLLK ++GTGIL+MP AF+NAGL  G+F T+++  ICTHC ++LV C H L RR +
Sbjct:   100 DTLVHLLKGNIGTGILAMPDAFKNAGLYVGLFGTMIMGAICTHCMHMLVNCSHELCRRFQ 159

Query:    82 VTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVIN 141
               S+ F+++   +F  GP   RRY+  AR  +   LF+   G C VY + +A N   V++
Sbjct:   160 QPSLDFSEVAYCSFESGPLGLRRYSMLARRIVTTFLFITQIGFCCVYFLFVALNIKDVMD 219

Query:   142 HYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLHK 201
             HY   ++ +++Y+   L P+ILL+ V NLK L PVS+VA LL   GL ITF Y++ DL  
Sbjct:   220 HYY--KMPVQIYLLIMLGPMILLNLVRNLKYLTPVSLVAALLTVAGLAITFSYMLVDLPD 277

Query:   202 PMEMPQIADISTMPTFFSIVIFAIEAIGVVI 232
                +  +A  +T+P +F   I+A E IGVV+
Sbjct:   278 VHTVKPVATWATLPLYFGTAIYAFEGIGVVL 308

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0033760 CG8785 [Drosophila melanogaster (taxid:7227)]

 Score = 441 (160.3 bits), Expect = 2.5e-41, P = 2.5e-41
 Identities = 91/212 (42%), Positives = 131/212 (61%)

Query:    21 GETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRT 80
             G  L HLLK+SLGTGIL+MP AF NAGL  G+ +T++V  +CTHC +ILV+  H + R  
Sbjct:    66 GGALAHLLKSSLGTGILAMPMAFHNAGLAFGMAMTLIVGFLCTHCVHILVKTSHDICRDA 125

Query:    81 KVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI 140
             KV+++ FA+  E  F  GP   R Y+ FA+  + +GL   Y+    VY V IA +F  VI
Sbjct:   126 KVSALGFAETAEKVFEYGPKGMRPYSNFAKQFVDIGLMATYYAAACVYIVFIATSFHDVI 185

Query:   141 NHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDLH 200
             N+      D+R+YI+  +IP +L+  + +LK L P SM+AN+ +     IT YY+  +  
Sbjct:   186 NYDLKINWDVRIYIALTVIPCLLIGQIRDLKWLVPFSMMANIFIVVTFAITLYYMFDEPL 245

Query:   201 KPMEMPQIADISTMPTFFSIVIFAIEAIGVVI 232
                + P IA  + +P FF+ VIFA+E IGVV+
Sbjct:   246 VYSDKPLIAKAAHIPLFFATVIFAMEGIGVVM 277

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

FB|FBgn0036116 CG7888 [Drosophila melanogaster (taxid:7227)]

 Score = 409 (149.0 bits), Expect = 1.0e-37, P = 1.0e-37
 Identities = 86/213 (40%), Positives = 122/213 (57%)

Query:    20 DGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRR 79
             + ETL HLLK SLGTGIL+MP AFRN+G   G   T+++  ICT C + LV+  + L RR
Sbjct:    55 NSETLFHLLKGSLGTGILAMPNAFRNSGYITGSIGTIVIGFICTFCIHQLVKAQYELCRR 114

Query:    80 TKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKV 139
              K+ SM++  + E A  +GP   R +A +    +   L +   GTC VY V +A N   +
Sbjct:   115 KKMPSMNYPMVAETAMGEGPKCFRVFAPYIGTVVNTFLLIYQLGTCCVYVVFVASNIKAI 174

Query:   140 INHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWDL 199
             ++    T +D+R+ +   L+PLIL++WV NLK LAP S +AN +     GI  YYI  + 
Sbjct:   175 VDAVADTSIDVRLCMIIILLPLILINWVRNLKYLAPFSTLANAITMVSFGIICYYIFREP 234

Query:   200 HKPMEMPQIADISTMPTFFSIVIFAIEAIGVVI 232
                         S  P FF  V+FA+EAIGV++
Sbjct:   235 VTTEGKDAFGKPSNFPLFFGTVLFALEAIGVIL 267

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0003333 "amino acid transmembrane transport" evidence=ISS

FB|FBgn0035300 CG1139 [Drosophila melanogaster (taxid:7227)]

 Score = 403 (146.9 bits), Expect = 4.8e-37, P = 4.8e-37
 Identities = 84/223 (37%), Positives = 133/223 (59%)

Query:    13 ESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQC 72
             E  N   + +T  H LKAS+GTG+L+MP AF +AG   G  LT+++  +  +C +IL++C
Sbjct:    38 ELKNPTTNFQTFAHFLKASVGTGVLAMPSAFAHAGYVNGTLLTLIIGSLALYCLHILIKC 97

Query:    73 GHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAY--FGTCSVYTV 130
              ++L +R +V  +SF+    +   +GP W R  A  A +  + G FLA+  FG C VY V
Sbjct:    98 MYILCKRQRVPYVSFSQAMNLGLKQGPPWLRCLAPIA-VPFVDG-FLAFYHFGICCVYVV 155

Query:   131 IIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGI 190
              IA++  ++++ Y     D+R+++   ++PL+L+  + NLK LAP S  ANLL+  G GI
Sbjct:   156 FIAESIKQLVDEYL-VVWDVRIHMCIIIVPLLLIYSIKNLKLLAPFSSAANLLLLVGFGI 214

Query:   191 TFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVIS 233
               YYI  +L    E         +PTFF  V+FA+EA+GV+++
Sbjct:   215 ILYYIFEELPPLSERDPFVAAGKLPTFFGTVLFALEAVGVILA 257

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0040007 "growth" evidence=IMP

GO:0003333 "amino acid transmembrane transport" evidence=ISS

WB|WBGene00012804 Y43F4B.7 [Caenorhabditis elegans (taxid:6239)]

 Score = 342 (125.4 bits), Expect = 2.5e-30, P = 2.5e-30
 Identities = 73/231 (31%), Positives = 124/231 (53%)

Query:     2 ETFLPQDGSKTESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVI 61
             +T L QD   TE N++  + +   H++KA LGTG+LS+P AF+++GL  G+ LTVL+ +I
Sbjct:    35 DTSLFQDRLPTE-NSLTPE-QAFIHMVKAMLGTGLLSLPLAFKHSGLFLGLILTVLICLI 92

Query:    62 CTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAY 121
             C +C   +V   H +  R     + +A+I   A   GP W +R   F +  + + +F++ 
Sbjct:    93 CLYCMRQVVFAAHFVCNRNGRDLIDYANIMRGAVEMGPPWIKRNGYFFKQLVNVNMFISQ 152

Query:   122 FGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVAN 181
              G C VY V +A N     N+ T   L   V++   LIP++ +  +  L  LAP +M AN
Sbjct:   153 LGFCCVYFVFMADNLEDFFNNNTSIHLSKAVWMLLLLIPMLSICSIRRLSILAPFAMAAN 212

Query:   182 LLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVI 232
             ++    + +  ++ + DL     +P     + +P FF  V+FA E + V++
Sbjct:   213 VVYVVAVAVVLFFFLSDLRPISSLPWFGKATDLPLFFGTVMFAFEGVAVIM 263

GO:0016021 "integral to membrane" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|E7EW39 SLC36A1 "Proton-coupled amino acid transporter 1" [Homo sapiens (taxid:9606)]

 Score = 333 (122.3 bits), Expect = 2.4e-29, P = 2.4e-29
 Identities = 75/226 (33%), Positives = 120/226 (53%)

Query:    22 ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTK 81
             +TL HLLK ++GTG+L +P A +NAG+  G    +++ ++  HC  ILV+C H   RR  
Sbjct:    51 QTLIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVHCMGILVKCAHHFCRRLN 110

Query:    82 VTSMSFADIGEVAFAKGP-AWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI 140
              + + + D         P +W R +A + R  +   L +   G C VY V +A NF +VI
Sbjct:   111 KSFVDYGDTVMYGLESSPCSWLRNHAHWGRRVVDFFLIVTQLGFCCVYFVFLADNFKQVI 170

Query:   141 NHYTGTE--------------LDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGT 186
                 GT               +D R+Y+ +FL  L+LL ++ NL++L+  S++AN+ M  
Sbjct:   171 EAANGTTNNCHNNETVILTPTMDSRLYMLSFLPFLVLLVFIRNLRALSIFSLLANITMLV 230

Query:   187 GLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVI 232
              L + + +IV  +  P  +P +A   T P FF   IF+ E IG+V+
Sbjct:   231 SLVMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIGMVL 276

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3LUT9 SLC36A1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 338 (124.0 bits), Expect = 3.6e-29, Sum P(2) = 3.6e-29
 Identities = 77/226 (34%), Positives = 120/226 (53%)

Query:    22 ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTK 81
             +TL HLLK ++GTG+L +P A +NAG+  G    +L+ ++  HC  +LV+C H    R  
Sbjct:    51 QTLIHLLKGNIGTGLLGLPLAIKNAGILMGPLSLLLMGLVAVHCMGLLVKCAHHFCHRLN 110

Query:    82 VTSMSFADIGEVAFAKGP-AWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI 140
                + + D         P AW R +A + R  +   L +   G CSVY V +A NF +VI
Sbjct:   111 KPFLDYGDTVMYGLEASPSAWLRNHAHWGRHIVDFFLIVTQLGFCSVYFVFLADNFKQVI 170

Query:   141 NHYTGTE--------------LDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGT 186
                 GT               +D R+Y+++FL  L+LL ++ NL+ L+  S++AN+ M  
Sbjct:   171 EAANGTTNNCHNNETVILTPTMDSRLYMASFLPFLVLLVFIRNLRVLSVFSLLANVTMLV 230

Query:   187 GLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVI 232
              L + + +IV ++  P  +P +A   T P FF   IFA E IG+V+
Sbjct:   231 SLVMIYQFIVQEIPDPSHLPLVASWKTYPLFFGTAIFAFEGIGMVL 276

GO:0015992 "proton transport" evidence=IEA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IEA

GO:0015187 "glycine transmembrane transporter activity" evidence=IEA

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2RHF1 SLC36A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 340 (124.7 bits), Expect = 6.1e-29, P = 6.1e-29
 Identities = 78/226 (34%), Positives = 120/226 (53%)

Query:    22 ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTK 81
             +TL HLLK +LGTG+L +P A +NAG+  G    +++ ++  HC  ILV+C H   RR  
Sbjct:    51 QTLIHLLKGNLGTGLLGLPLAVKNAGILMGPLSLLVIGIVAVHCMSILVRCAHHFCRRLN 110

Query:    82 VTSMSFADIGEVAFAKGPA-WGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI 140
                + + D         P+ W R +A + R  +   L +   G C VY V +A NF +VI
Sbjct:   111 KPFVDYGDTVMYGLESSPSSWLRNHAHWGRHIVDFFLIVTQLGFCCVYFVFLADNFKQVI 170

Query:   141 NHYTGTE--------------LDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGT 186
                 GT               +D R+Y+ +FL  L+LL +V NL++L+  S++AN+ M  
Sbjct:   171 EAANGTTNNCHNNETVILTPTMDSRLYMLSFLPFLVLLVFVRNLRALSIFSLLANITMLV 230

Query:   187 GLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVI 232
              L + + +IV ++  P  +P +A   T P FF   IFA E IG+V+
Sbjct:   231 SLVMLYQFIVQNIPDPSHLPLVASWKTYPLFFGTAIFAFEGIGMVL 276

GO:0015992 "proton transport" evidence=IEA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IEA

GO:0015187 "glycine transmembrane transporter activity" evidence=IEA

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:2445299 Slc36a1 "solute carrier family 36 (proton/amino acid symporter), member 1" [Mus musculus (taxid:10090)]

 Score = 338 (124.0 bits), Expect = 1.1e-28, P = 1.1e-28
 Identities = 79/226 (34%), Positives = 120/226 (53%)

Query:    22 ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTK 81
             +TL HLLK ++GTG+L +P A +NAGL  G    +++ ++  HC  ILV+C H L RR  
Sbjct:    50 QTLIHLLKGNIGTGLLGLPLAVKNAGLLLGPLSLLVIGIVAVHCMGILVKCAHHLCRRLN 109

Query:    82 VTSMSFADIGEVAFAKGPA-WGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI 140
                + + D         P+ W R ++ + R  +   L +   G C VY V +A NF +VI
Sbjct:   110 KPFLDYGDTVMYGLECSPSTWVRNHSHWGRRIVDFFLIVTQLGFCCVYFVFLADNFKQVI 169

Query:   141 NHYTGTE--------------LDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGT 186
                 GT               +D R+Y+ +FL  L+LLS++ NL+ L+  S++AN+ M  
Sbjct:   170 EAANGTTTNCNNNVTVIPTPTMDSRLYMLSFLPFLVLLSFIRNLRVLSIFSLLANISMFV 229

Query:   187 GLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVI 232
              L + + +IV  +  P  +P +A   T P FF   IFA E IGVV+
Sbjct:   230 SLIMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFAFEGIGVVL 275

GO:0003333 "amino acid transmembrane transport" evidence=IDA

GO:0005280 "hydrogen:amino acid symporter activity" evidence=IDA

GO:0005302 "L-tyrosine transmembrane transporter activity" evidence=IDA

GO:0005764 "lysosome" evidence=ISO;ISA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=ISO

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=ISO

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IDA

GO:0015187 "glycine transmembrane transporter activity" evidence=IDA

GO:0015193 "L-proline transmembrane transporter activity" evidence=IDA

GO:0015293 "symporter activity" evidence=IEA

GO:0015804 "neutral amino acid transport" evidence=ISO

GO:0015808 "L-alanine transport" evidence=IDA

GO:0015816 "glycine transport" evidence=IDA

GO:0015824 "proline transport" evidence=IDA

GO:0015992 "proton transport" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0034220 "ion transmembrane transport" evidence=IDA

GO:0035524 "proline transmembrane transport" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	675
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-28
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	1e-16
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	6e-11
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	3e-08
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-06
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	2e-05
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	7e-04

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  118 bits (298), Expect = 1e-28
 Identities = 49/215 (22%), Positives = 94/215 (43%), Gaps = 16/215 (7%)

Query: 26  HLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSM 85
           +L+KA +G G+LS+PYAF+  G   G+ L V+V +I  +  ++LVQC   + +       
Sbjct: 11  NLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVKGKRRK 70

Query: 86  SFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI-NHYT 144
           S+ D+G   F              ++ IL  + +  FG C  Y +    N   +  + + 
Sbjct: 71  SYGDLGYRLFGP----------KGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 145 GTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIV-----WDL 199
              + +  +I  F +  I LS++PNL +L+ +S+VA +     + +              
Sbjct: 121 TCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQG 180

Query: 200 HKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISF 234
              +       ++ +     I++FA E   V++  
Sbjct: 181 VGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPI 215

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score = 82.3 bits (204), Expect = 1e-16
 Identities = 39/215 (18%), Positives = 72/215 (33%), Gaps = 18/215 (8%)

Query: 27  LLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMS 86
           L   ++G G+L +P AF   G   G+ L ++   +      +L++        +     S
Sbjct: 18  LAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEA----LLSSPNGKAS 73

Query: 87  FADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGT 146
              + E     G   G        I I L  F A +G    Y V I    +  + +  G 
Sbjct: 74  ITSLVEDYL--GKKGG--------ILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGL 123

Query: 147 E-LDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIV---WDLHKP 202
             L  ++    F + L  LSW+  L  L   S++    +   + +  Y I          
Sbjct: 124 NPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFA 183

Query: 203 MEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTA 237
           +     +    +     + +F+    G + S    
Sbjct: 184 LPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNY 218

Length = 415

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score = 64.6 bits (158), Expect = 6e-11
 Identities = 41/184 (22%), Positives = 83/184 (45%), Gaps = 24/184 (13%)

Query: 431 HPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTD 490
             ++  + + +L+KA +G G+LS+PYAF+  G   G+ L V+V +I  +  ++L    + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQ-CSK 59

Query: 491 PLAESFTRYRNSIHALCVRFDLYSRFELS--------SKISIRISQVI-----------N 531
            + +   + R S   L  R  L+              +   + IS +I           +
Sbjct: 60  YVDKVKGKRRKSYGDLGYR--LFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDS 117

Query: 532 HYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAV 591
            +    + +  +I  F +  I LS++PNL +L+ +S+VA +       +     V ++ V
Sbjct: 118 FFDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLY--IVILVLSVAELGV 175

Query: 592 VPAK 595
           + A+
Sbjct: 176 LTAQ 179

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score = 56.1 bits (136), Expect = 3e-08
 Identities = 29/146 (19%), Positives = 56/146 (38%), Gaps = 21/146 (14%)

Query: 259 VQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYT 318
           VQC   + +       S+ D+G   F              ++ IL  + +  FG C  Y 
Sbjct: 55  VQCSKYVDKVKGKRRKSYGDLGYRLFGP----------KGKLLILFAILVNLFGVCISYL 104

Query: 319 VIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMV 378
           +    N               + +    + +  +I  F +  I LS++PNL +L+ +S+V
Sbjct: 105 IFAGDNLPAIFD---------SFFDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLV 155

Query: 379 ANLLMGTGLGITFYYIVYKVAVVPAK 404
           A +       +     V ++ V+ A+
Sbjct: 156 AAVSSLY--IVILVLSVAELGVLTAQ 179

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score = 51.1 bits (123), Expect = 1e-06
 Identities = 18/54 (33%), Positives = 34/54 (62%)

Query: 622 HPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYIL 675
             ++  + + +L+KA +G G+LS+PYAF+  G   G+ L V+V +I  +  ++L
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLL 54

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score = 47.3 bits (113), Expect = 2e-05
 Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 28/166 (16%)

Query: 442 LLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRN 501
           L   ++G G+L +P AF   G   G+ L ++   +      +        L E+     N
Sbjct: 18  LAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLL--------LLEALLSSPN 69

Query: 502 SIHALC------------------VRFDLYS-RFELSSKISIRISQVINHYTGTE-LDIR 541
              ++                     F LY         I   ++  + +  G   L  +
Sbjct: 70  GKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRK 129

Query: 542 VYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVY 587
           +    F + L  LSW+  L  L   S++    +   + +  Y I +
Sbjct: 130 LGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIPH 175

Length = 415

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score = 42.3 bits (100), Expect = 7e-04
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 633 LLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYIL 675
           L   ++G G+L +P AF   G   G+ L ++   +      +L
Sbjct: 18  LAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLL 60

Length = 415

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	675
KOG1304|consensus	449		100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1303|consensus	437		100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
KOG1304|consensus	449		100.0
KOG1305|consensus	411		100.0
KOG4303|consensus	524		99.98
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.93
PTZ00206	467	amino acid transporter; Provisional	99.85
PRK10483	414	tryptophan permease; Provisional	99.84
PRK09664	415	tryptophan permease TnaB; Provisional	99.84
PLN03074	473	auxin influx permease; Provisional	99.83
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.82
PRK15132	403	tyrosine transporter TyrP; Provisional	99.81
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.77
KOG1303|consensus	437		99.76
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.72
KOG4303|consensus	524		99.56
KOG1305|consensus	411		99.55
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.51
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.43
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.35
KOG3832|consensus	319		98.72
TIGR00906	557	2A0303 cationic amino acid transport permease.	98.45
PRK10655	438	potE putrescine transporter; Provisional	97.96
TIGR00909	429	2A0306 amino acid transporter.	97.94
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	97.9
PRK09664	415	tryptophan permease TnaB; Provisional	97.9
PRK10483	414	tryptophan permease; Provisional	97.77
PRK15132	403	tyrosine transporter TyrP; Provisional	97.74
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	97.7
TIGR00912	359	2A0309 spore germination protein (amino acid perme	97.66
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	97.61
PRK10746	461	putative transport protein YifK; Provisional	97.48
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.44
KOG1287|consensus	479		97.33
TIGR00913	478	2A0310 amino acid permease (yeast).	97.28
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.18
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.16
PRK10644	445	arginine:agmatin antiporter; Provisional	97.13
PRK11021	410	putative transporter; Provisional	97.13
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.09
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.08
PRK13629	443	threonine/serine transporter TdcC; Provisional	97.07
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	96.96
PRK10238	456	aromatic amino acid transporter; Provisional	96.9
TIGR00814	397	stp serine transporter. The HAAAP family includes	96.88
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	96.86
PF03845	320	Spore_permease: Spore germination protein; InterPr	96.83
PRK11387	471	S-methylmethionine transporter; Provisional	96.67
PRK11357	445	frlA putative fructoselysine transporter; Provisio	96.65
TIGR00930	953	2a30 K-Cl cotransporter.	96.63
PRK10249	458	phenylalanine transporter; Provisional	96.51
PRK10580	457	proY putative proline-specific permease; Provision	96.48
PRK10836	489	lysine transporter; Provisional	96.48
TIGR00912	359	2A0309 spore germination protein (amino acid perme	96.35
KOG3832|consensus	319		95.8
TIGR00911	501	2A0308 L-type amino acid transporter.	95.76
PRK10655	438	potE putrescine transporter; Provisional	95.62
PRK15049	499	L-asparagine permease; Provisional	95.57
COG3949	349	Uncharacterized membrane protein [Function unknown	95.36
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	95.15
PRK11387	471	S-methylmethionine transporter; Provisional	95.13
PRK10197	446	gamma-aminobutyrate transporter; Provisional	94.75
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	94.7
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	94.4
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	94.25
COG0531	466	PotE Amino acid transporters [Amino acid transport	94.14
KOG1286|consensus	554		93.95
COG0833	541	LysP Amino acid transporters [Amino acid transport	93.85
PRK15049	499	L-asparagine permease; Provisional	93.75
PF02554	376	CstA: Carbon starvation protein CstA; InterPro: IP	93.66
PRK10836	489	lysine transporter; Provisional	93.23
TIGR00930	953	2a30 K-Cl cotransporter.	93.02
TIGR00907	482	2A0304 amino acid permease (GABA permease).	92.97
PRK10238	456	aromatic amino acid transporter; Provisional	92.7
PRK10644	445	arginine:agmatin antiporter; Provisional	92.54
PRK11021	410	putative transporter; Provisional	92.47
PF03845	320	Spore_permease: Spore germination protein; InterPr	92.4
TIGR00911	501	2A0308 L-type amino acid transporter.	91.9
PRK15238	496	inner membrane transporter YjeM; Provisional	91.49
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	90.9
TIGR00906	557	2A0303 cationic amino acid transport permease.	90.81
PRK10249	458	phenylalanine transporter; Provisional	90.61
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	90.37
PRK10580	457	proY putative proline-specific permease; Provision	90.22
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	89.8
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	89.04
TIGR00909	429	2A0306 amino acid transporter.	88.84
TIGR00835	425	agcS amino acid carrier protein. Members of the AG	87.94
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	86.65
COG0531	466	PotE Amino acid transporters [Amino acid transport	85.28
TIGR00913	478	2A0310 amino acid permease (yeast).	84.98
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	84.18
PRK11357	445	frlA putative fructoselysine transporter; Provisio	83.9
COG1966	575	CstA Carbon starvation protein, predicted membrane	82.42
KOG1287|consensus	479		81.17
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	80.24

>KOG1304|consensus

Probab=100.00  E-value=2e-55  Score=462.78  Aligned_cols=357  Identities=31%  Similarity=0.558  Sum_probs=331.5

Q ss_pred             CccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819         12 TESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG   91 (675)
Q Consensus        12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~   91 (675)
                      .+.++..|..+|..|+.|.++|+|+|++|+||+++||+.|.+..++++.++.||++.|++|.+++++|.+.+..+|++.+
T Consensus        41 ~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~  120 (449)
T KOG1304|consen   41 RDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETA  120 (449)
T ss_pred             ccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHH
Confidence            44566789999999999999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcc
Q psy12819         92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLK  171 (675)
Q Consensus        92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~  171 (675)
                      +.+++.|+.|.|.+|+++|.++++.+.+.|+|.|++|+++++++++++.+......++.+.|+.+..+++++++++|++|
T Consensus       121 ~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk  200 (449)
T KOG1304|consen  121 ESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLK  200 (449)
T ss_pred             HHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999999999666667899999999999999999999999


Q ss_pred             ccchhhhHHHHHHHHHhheeEEEEcccCCCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhh
Q psy12819        172 SLAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMI  251 (675)
Q Consensus       172 ~L~~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~  251 (675)
                      +|+++|+++++++++++.++++|..++.++.++.+.+.++++++.++|+.+|||++++++.|+|++            | 
T Consensus       201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~------------M-  267 (449)
T KOG1304|consen  201 ILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENS------------M-  267 (449)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhc------------c-
Confidence            999999999999999999999999999888888999888999999999999999999999999999            9 


Q ss_pred             cCCCCcccccceeEEeEEEEEee-------chhchhHHhhc----CCCCCchhhHHHHHHHHHHHHHhhhcc--eee--E
Q psy12819        252 GNGRDHNVQCGHVLYRRTKVTSM-------SFADIGEVAFA----KGPAWGRRYARFARICILLGLFLAYFG--TCS--V  316 (675)
Q Consensus       252 ~~p~~~~~~~~v~~~~~~iv~~l-------GY~~fG~~~~~----nlp~~~~~~~~~~~l~~~l~~~~s~Pl--~p~--~  316 (675)
                      |+|++|...+++++.+|.+++++       ||++|||++++    |+|++  ++.+.+|+++++++++|||+  +|.  +
T Consensus       268 k~P~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~--~l~~~Vkl~~ai~I~ls~pLQ~yv~~eI  345 (449)
T KOG1304|consen  268 KKPQKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQE--ILSQTVKLLLAIAIFLTYPLQFYVPIEI  345 (449)
T ss_pred             cChhhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCcc--HHHHHHHHHHHHHHHHcCchhhhhhHHH
Confidence            99999998888999999877765       99999999999    99995  99999999999999999999  555  8


Q ss_pred             EeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHHHHhhhhhhhhheee
Q psy12819        317 YTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANLLMGTGLGITFYYIV  395 (675)
Q Consensus       317 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~~l~filP~~fy~~~  395 (675)
                      +|+.+.+|++.++   .++.         +..+|+.+  ++++..+|..+||+++++++ |++++..+++++|.+++++.
T Consensus       346 i~~~i~~k~~~~~---~~~~---------~~~~R~~l--Vllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~  411 (449)
T KOG1304|consen  346 IEPGIRKKFSENR---KKLL---------EYALRVFL--VLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELIT  411 (449)
T ss_pred             HHHhHHHhcCcch---hHHH---------HHHHHHHH--HHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHH
Confidence            8888888877443   1221         35679884  88899999999999999999 99999999999999999987


Q ss_pred             cc
Q psy12819        396 YK  397 (675)
Q Consensus       396 ~~  397 (675)
                      +.
T Consensus       412 ~~  413 (449)
T KOG1304|consen  412 FY  413 (449)
T ss_pred             hc
Confidence            76

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=9e-43  Score=384.86  Aligned_cols=333  Identities=13%  Similarity=0.140  Sum_probs=257.6

Q ss_pred             CCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHh
Q psy12819         17 IGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFA   96 (675)
Q Consensus        17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~   96 (675)
                      +++..++++|++|+++|+|+|+||+||+++||++|++++++++.++.||+++|.+++++.      +..+|+|++++++ 
T Consensus        59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~------~~~sY~~la~~~~-  131 (467)
T PTZ00206         59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT------NIRTYEGVARVLL-  131 (467)
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCCCHHHHHHHHh-
Confidence            356689999999999999999999999999999999999999999999999999987642      2469999999998 


Q ss_pred             cCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCC-----ccHH-HHHHHHHHHHHHhhcccCc
Q psy12819         97 KGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTE-----LDIR-VYISAFLIPLILLSWVPNL  170 (675)
Q Consensus        97 ~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~-----~~~~-~~~~i~~~~~~pl~~~~~l  170 (675)
                               ||++++++++++.+.++|+|++|+++++|++++++......+     .+.| .+.+++.++++|++++|++
T Consensus       132 ---------G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i  202 (467)
T PTZ00206        132 ---------GPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHI  202 (467)
T ss_pred             ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccch
Confidence                     789999999999999999999999999999999886421111     1122 2334566778999999999


Q ss_pred             cccchhhhHHHHHHHHHhheeEEEEc-ccCCC-CCC----------CCCCCCCCchhhHhHHHHhhhccceEeeeecccc
Q psy12819        171 KSLAPVSMVANLLMGTGLGITFYYIV-WDLHK-PME----------MPQIADISTMPTFFSIVIFAIEAIGVVISFRTAT  238 (675)
Q Consensus       171 ~~L~~~S~~~~~~~~~~~~ii~~~~~-~~~~~-~~~----------~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~  238 (675)
                      ++|+++|.+++.++++..+.++++.. ++.|+ .++          .+.+....+.+.++|+++|||.||.+++++++| 
T Consensus       203 ~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~-  281 (467)
T PTZ00206        203 DSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMD-  281 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHh-
Confidence            99999999999987766655554333 33322 111          112222345788999999999999999999999 


Q ss_pred             ccCCCchhhhhhhcCCC--CcccccceeEEeEEEEEee-------chhchhHHhhc----CC-CCCchhhHHHHHHHHHH
Q psy12819        239 LLSRPVISRELMIGNGR--DHNVQCGHVLYRRTKVTSM-------SFADIGEVAFA----KG-PAWGRRYARFARICILL  304 (675)
Q Consensus       239 ~~~~~~~~~~~M~~~p~--~~~~~~~v~~~~~~iv~~l-------GY~~fG~~~~~----nl-p~~~~~~~~~~~l~~~l  304 (675)
                                 | |+|+  |+.+   ++..++.++.++       ||++||+++++    |+ |.+ |+...++++++.+
T Consensus       282 -----------M-~~~t~~~~~~---v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~-~~~~~v~~~~~~~  345 (467)
T PTZ00206        282 -----------M-TNRSVGKFVL---ASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVN-EPAIMVGFVGVLV  345 (467)
T ss_pred             -----------h-cccchhHHHH---HHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCC-CchhhHHHHHHHH
Confidence                       9 7754  5554   555555443322       99999999988    88 555 6889999999999


Q ss_pred             HHHhhhcc--eeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHH
Q psy12819        305 GLFLAYFG--TCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANL  381 (675)
Q Consensus       305 ~~~~s~Pl--~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~  381 (675)
                      .++++||+  +|+  ++.+++...++.++..++++         ...|..  +++++.++|+.+||++.++++ |++++.
T Consensus       346 ~v~~sypL~~~p~--r~~i~~~~~~~~~~~~~~~~---------~~~~~~--l~~~~l~iAi~vP~l~~vl~lvGa~~~~  412 (467)
T PTZ00206        346 KLFVSYALLGMAC--RNALYDVIGWDARKVAFWKH---------CIAVVT--LSVVMLLCGLFIPKINTVLGFAGSISGG  412 (467)
T ss_pred             HHHHhhhhhhhhH--HHHHHHHhCCCcccCchhhH---------HHHHHH--HHHHHHHHHhccCCHHHhhhhhhHHHHH
Confidence            99999999  888  44444433222211111111         222333  355678899999999999999 999999


Q ss_pred             HHhhhhhhhhheee
Q psy12819        382 LMGTGLGITFYYIV  395 (675)
Q Consensus       382 ~l~filP~~fy~~~  395 (675)
                      .++|++|++||++.
T Consensus       413 ~l~fi~P~lf~l~~  426 (467)
T PTZ00206        413 LLGFILPALLFMYS  426 (467)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999973

>KOG1303|consensus

Probab=100.00  E-value=2e-41  Score=363.72  Aligned_cols=346  Identities=20%  Similarity=0.239  Sum_probs=278.1

Q ss_pred             cCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819         14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV   93 (675)
Q Consensus        14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~   93 (675)
                      .++++|++++.+|.++..+|.|+|+||||+++.||+.|+++++..++++.||.++|.+|.+..+.+..+...+|.|++++
T Consensus        34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~  113 (437)
T KOG1303|consen   34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA  113 (437)
T ss_pred             cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence            36679999999999999999999999999999999999999999999999999999999998776655556889999999


Q ss_pred             HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhcccCcc
Q psy12819         94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGT--ELDIRVYISAFLIPLILLSWVPNLK  171 (675)
Q Consensus        94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~--~~~~~~~~~i~~~~~~pl~~~~~l~  171 (675)
                      +|          |+++++++...+.+.++|+|+.|++..+|+++.+++..+..  .++.+.|+++++++.+|++++||++
T Consensus       114 af----------G~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~  183 (437)
T KOG1303|consen  114 AF----------GPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFH  183 (437)
T ss_pred             Hh----------CCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcc
Confidence            99          55669999999999999999999999999999999987654  3567889999999999999999999


Q ss_pred             ccchhhhHHHHHHHHHhheeEEEEcccC-CC-CCCCCCC-CCCCch-hhHhHHHHhhhccceEeeeeccccccCCCchhh
Q psy12819        172 SLAPVSMVANLLMGTGLGITFYYIVWDL-HK-PMEMPQI-ADISTM-PTFFSIVIFAIEAIGVVISFRTATLLSRPVISR  247 (675)
Q Consensus       172 ~L~~~S~~~~~~~~~~~~ii~~~~~~~~-~~-~~~~~~~-~~~~~~-~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~  247 (675)
                      .++++|..+.+.......+..+....+. .. .++.+.. .+.... ++++|+++|+|++|..+|+||++          
T Consensus       184 ~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~t----------  253 (437)
T KOG1303|consen  184 SLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHT----------  253 (437)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhh----------
Confidence            9999999998866543333333222222 11 1111111 111222 79999999999999999999999          


Q ss_pred             hhhhcCCCCcccccceeEEeEEEEEe-------echhchhHHhhc----CCCCCchhhHHHHHHHHHHHHHhhhcc--ee
Q psy12819        248 ELMIGNGRDHNVQCGHVLYRRTKVTS-------MSFADIGEVAFA----KGPAWGRRYARFARICILLGLFLAYFG--TC  314 (675)
Q Consensus       248 ~~M~~~p~~~~~~~~v~~~~~~iv~~-------lGY~~fG~~~~~----nlp~~~~~~~~~~~l~~~l~~~~s~Pl--~p  314 (675)
                        | |+|++|+|   .+..++.+++.       .||++|||++++    |+++ |.|+...+++++.++++.++++  .|
T Consensus       254 --M-k~p~~f~~---~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~-p~~~~~~ani~i~~h~i~s~~i~a~p  326 (437)
T KOG1303|consen  254 --M-KSPPKFKK---ALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQP-PTWLIALANILIVLHLIGSYQIYAQP  326 (437)
T ss_pred             --c-CCchhhhh---HHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccC-chhHHHHHHHHHHHHHhhhhhhhhcc
Confidence              9 99999988   55455444333       399999999999    6641 2589999999999999999999  78


Q ss_pred             eEEeHHHhhhcCCCCcccc-chhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHHHHhhhhhhhhh
Q psy12819        315 SVYTVIIAKNFSKSSKISI-RISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANLLMGTGLGITFY  392 (675)
Q Consensus       315 ~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~~l~filP~~fy  392 (675)
                      .  .+.+++..+.+.+.-. |.       ...|...|+..  +..+.++|+.+|+|++++++ |+.....+.+++|+++|
T Consensus       327 l--~~~~E~~~~~~~~~~~~~~-------~~~R~~~Rt~~--v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~y  395 (437)
T KOG1303|consen  327 L--FDVVEKLIGVKHPDFKKRS-------LVLRLLVRTFF--VAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMY  395 (437)
T ss_pred             h--HHHHHHHhccCCccccccc-------cceeeehhhHH--HHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            7  4444443332222101 11       12356778874  88889999999999999999 99999999999999999


Q ss_pred             eeecc
Q psy12819        393 YIVYK  397 (675)
Q Consensus       393 ~~~~~  397 (675)
                      ++.+|
T Consensus       396 l~~~k  400 (437)
T KOG1303|consen  396 LLIKK  400 (437)
T ss_pred             HHhhh
Confidence            98743

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=6.8e-42  Score=375.02  Aligned_cols=348  Identities=22%  Similarity=0.310  Sum_probs=282.2

Q ss_pred             CCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHH
Q psy12819         16 NIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAF   95 (675)
Q Consensus        16 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~   95 (675)
                      ||+|.+++++|++|+++|+|+|++|++|+++||++|++++++++.++.||.++|.|+.++.+  ++.+..+|+|++++++
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~   78 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF   78 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence            57899999999999999999999999999999999999999999999999999999988764  2234689999999888


Q ss_pred             hcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCC-CccHHHHHHHHHHHHHHhhcccCccccc
Q psy12819         96 AKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGT-ELDIRVYISAFLIPLILLSWVPNLKSLA  174 (675)
Q Consensus        96 ~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~-~~~~~~~~~i~~~~~~pl~~~~~l~~L~  174 (675)
                                ||++++++++++.+.++|.|++|+++++|.++++++...+. ..++..+.++..++++|++++|++++++
T Consensus        79 ----------G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~  148 (409)
T PF01490_consen   79 ----------GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLR  148 (409)
T ss_pred             ----------cccccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHH
Confidence                      78889999999999999999999999999999999876542 4567777788888999999999999999


Q ss_pred             hhhhHHHHHHHHHhheeEEEEcccC----CCCCCC--CCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhh
Q psy12819        175 PVSMVANLLMGTGLGITFYYIVWDL----HKPMEM--PQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRE  248 (675)
Q Consensus       175 ~~S~~~~~~~~~~~~ii~~~~~~~~----~~~~~~--~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~  248 (675)
                      +.|.+|+++++..+.++.++.....    .+.++.  ....++.+++.++|+++|||.||+++|++++|           
T Consensus       149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~-----------  217 (409)
T PF01490_consen  149 YLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSE-----------  217 (409)
T ss_pred             HHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeee-----------
Confidence            9999999987654233322222211    111111  22345678999999999999999999999999           


Q ss_pred             hhhcCCCCcccccceeEEeEEEEEee-------chhchhHHhhc----CCCCCchhhHHHHHHHHHHHHHhhhcc--eee
Q psy12819        249 LMIGNGRDHNVQCGHVLYRRTKVTSM-------SFADIGEVAFA----KGPAWGRRYARFARICILLGLFLAYFG--TCS  315 (675)
Q Consensus       249 ~M~~~p~~~~~~~~v~~~~~~iv~~l-------GY~~fG~~~~~----nlp~~~~~~~~~~~l~~~l~~~~s~Pl--~p~  315 (675)
                       | |+|++++|..++...++.+++++       ||++||+++++    |+|++ +++..++++++.++++++||+  +|.
T Consensus       218 -m-~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~-~~~~~i~~~~~~i~~~~s~pl~~~p~  294 (409)
T PF01490_consen  218 -M-KDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLPND-DVLIIIARILLVISLLLSYPLQLFPA  294 (409)
T ss_pred             -c-cCCccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCCCc-ccccccccccchhhhhhccccccchh
Confidence             9 99999886555777776654443       99999999988    88987 789999999999999999999  888


Q ss_pred             --EEeHHHhhh---cCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHHHHhhhhhh
Q psy12819        316 --VYTVIIAKN---FSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANLLMGTGLGI  389 (675)
Q Consensus       316 --~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~~l~filP~  389 (675)
                        .+++.+.++   .+++.+...+.       ...+...|+.  +++.++++|+.+||+++++++ |++++..++|++|+
T Consensus       295 ~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~--~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~  365 (409)
T PF01490_consen  295 RNSLENLLFKRAASSRDSPKNTPSS-------RWLRYLIRII--LVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPA  365 (409)
T ss_pred             Hhhhhhheecccccccccccccccc-------ceeeeeeecc--hhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHH
Confidence              455544432   00011111000       0124556776  477788999999999999999 99999999999999


Q ss_pred             hhheeeccc
Q psy12819        390 TFYYIVYKV  398 (675)
Q Consensus       390 ~fy~~~~~~  398 (675)
                      ++|+|.++.
T Consensus       366 l~~~~~~~~  374 (409)
T PF01490_consen  366 LLYLKLFKR  374 (409)
T ss_pred             HHHHHhhcc
Confidence            999998873

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=8.2e-38  Score=343.76  Aligned_cols=336  Identities=11%  Similarity=0.075  Sum_probs=259.4

Q ss_pred             cCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCC-------C
Q psy12819         14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSM-------S   86 (675)
Q Consensus        14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~-------s   86 (675)
                      .+++++..++.+|++|..+|.|+|+||+||+++||++|++++++.++++.||+++|.++.+++++|.+++..       +
T Consensus        42 ~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~  121 (473)
T PLN03074         42 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ  121 (473)
T ss_pred             ccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence            466889999999999999999999999999999999999999999999999999999999888776544444       4


Q ss_pred             HHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q psy12819         87 FADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSW  166 (675)
Q Consensus        87 y~~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~  166 (675)
                      |.|+++..+          ||.++.+..+...+++++.|+.|++..++++..+-     .+++.+.|++++.++.+|+++
T Consensus       122 ~~e~~~~~~----------G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~-----~~~~~~~~~~i~~~v~~~~~~  186 (473)
T PLN03074        122 WFEVLDGLL----------GPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN-----DNLDKRTWTYIFGACCATTVF  186 (473)
T ss_pred             HHHHHHHhc----------ChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC-----CCcCCCeEEeehHHHHHHHHH
Confidence            456666555          78888899999999999999999998888777652     356888999999999999999


Q ss_pred             ccCccccchhhhHHHHHHHHHhheeEEEEc-cc-CCCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCc
Q psy12819        167 VPNLKSLAPVSMVANLLMGTGLGITFYYIV-WD-LHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPV  244 (675)
Q Consensus       167 ~~~l~~L~~~S~~~~~~~~~~~~ii~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~  244 (675)
                      +|++++++++|.+|+.+++++.+.+..... .+ .++.++. ...+...++.++++++|||++|+.+|++++|       
T Consensus       187 i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~-~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~-------  258 (473)
T PLN03074        187 IPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS-GPTKLVLYFTGATNILYTFGGHAVTVEIMHA-------  258 (473)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CchhHHHHHHHHHHHHHHhcccccHHHHHHh-------
Confidence            999999999999998875543222221111 11 1222111 1123334566677799999999999999999       


Q ss_pred             hhhhhhhcCCCCcccccceeEEeEEEE-------EeechhchhHHhhc------CCCCCchhhHHHHHHHHHHHHHhhhc
Q psy12819        245 ISRELMIGNGRDHNVQCGHVLYRRTKV-------TSMSFADIGEVAFA------KGPAWGRRYARFARICILLGLFLAYF  311 (675)
Q Consensus       245 ~~~~~M~~~p~~~~~~~~v~~~~~~iv-------~~lGY~~fG~~~~~------nlp~~~~~~~~~~~l~~~l~~~~s~P  311 (675)
                           | |+|++|++   +...++..+       .+.||++|||++++      |+|++  .+..++++++.++++.+||
T Consensus       259 -----M-~~P~~F~~---~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~--~~~~~~~~~~~i~~~~sy~  327 (473)
T PLN03074        259 -----M-WKPQKFKY---IYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLPRS--GWRDAAVILMLIHQFITFG  327 (473)
T ss_pred             -----c-cChhcccc---hHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCCCc--hHHHHHHHHHHHHHHHHHH
Confidence                 9 99999997   333222221       23399999998764      58865  5689999999999999999


Q ss_pred             c--eeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHHHHhhhhh
Q psy12819        312 G--TCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANLLMGTGLG  388 (675)
Q Consensus       312 l--~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~~l~filP  388 (675)
                      +  +|.  .+..++..+.+.+ +..         ..+..+|+.  ++++++++|+.+|+|++++++ |++++..+++++|
T Consensus       328 l~~~p~--~~~~e~~~~~~~~-k~~---------~~r~~~R~~--lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P  393 (473)
T PLN03074        328 FACTPL--YFVWEKAIGVHDT-KSI---------CLRALARLP--VVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIP  393 (473)
T ss_pred             HHHhhH--HHHHHHHhccccc-ccH---------HHHHHHHHH--HHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHH
Confidence            9  777  2223332222111 111         123567887  488889999999999999999 9999999999999


Q ss_pred             hhhheeecc
Q psy12819        389 ITFYYIVYK  397 (675)
Q Consensus       389 ~~fy~~~~~  397 (675)
                      +++|++.++
T Consensus       394 ~l~~l~~~~  402 (473)
T PLN03074        394 SLAHMLTYR  402 (473)
T ss_pred             HHHHHHHhc
Confidence            999998654

>KOG1304|consensus

Probab=100.00  E-value=2.7e-36  Score=318.10  Aligned_cols=236  Identities=29%  Similarity=0.509  Sum_probs=192.7

Q ss_pred             CCCCCccccccCCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccC---CCCch
Q psy12819        418 KDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNT---DPLAE  494 (675)
Q Consensus       418 ~~~~~~~~~~~~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~---~~~~~  494 (675)
                      +.++++.+.++.++++|..+|..|++|+.+|+|+|+||+|||++||+.|.+..++++.+|+||+|+|+++.+   +...+
T Consensus        32 d~~~~~~~~~~~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~  111 (449)
T KOG1304|consen   32 DGDYSPLQLRDREHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRG  111 (449)
T ss_pred             CCCCCccccccCCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            344566667777788999999999999999999999999999999999999999999999999999975222   12222


Q ss_pred             hHhhHHHHHHHh-------hhhhccceee---------------eehHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHH
Q psy12819        495 SFTRYRNSIHAL-------CVRFDLYSRF---------------ELSSKISIRISQVINHYTGTELDIRVYISAFLIPLI  552 (675)
Q Consensus       495 ~~~~~~~~~~~~-------~~~~g~~~~~---------------~~~i~~~~~l~~~~~~~~~~~~~~~~~i~i~~~~~~  552 (675)
                      .+-||++.++..       ++..|.++++               .+.+|+++|++++.+.....+++.++|++++.++++
T Consensus       112 ~~~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~l  191 (449)
T KOG1304|consen  112 PSLDYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLL  191 (449)
T ss_pred             ccccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHH
Confidence            335666555422       2333333222               123789999999999766678899999999999999


Q ss_pred             HhhcCCCCCchhHHHHHHHHHHHHHHhheeeeeecccccccccccCcceeeccccCCCCCcccccccCCCCccchhhhhh
Q psy12819        553 LLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTH  632 (675)
Q Consensus       553 pl~~ir~l~~L~~~S~~a~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~P~~~~~~~~~  632 (675)
                      |++++||||+|+++|++||+++++|+.++++|.+++..  +.++++. +.        .|+       +.|+|+|+++|+
T Consensus       192 ll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~--~~~~~~~-~~--------~~~-------~~~lf~Gtaifa  253 (449)
T KOG1304|consen  192 LLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLP--PTSDLPA-VT--------GWS-------GLPLFFGTAIFA  253 (449)
T ss_pred             HHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC--Ccccccc-cc--------chh-------hhHHHHHHHHHH
Confidence            99999999999999999999999999999999998865  2222221 11        122       578999999999


Q ss_pred             hhcccccccccccchhhhccCcccchHHHHHHHHHHhhhccc
Q psy12819        633 LLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYI  674 (675)
Q Consensus       633 ~~~~~~g~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~  674 (675)
                      |||  +|+ ++|+|++||+|++|.|.+|+++.||..+.++|+
T Consensus       254 fEG--ig~-VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~  292 (449)
T KOG1304|consen  254 FEG--IGM-VLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYI  292 (449)
T ss_pred             hcc--ceE-EEehhhcccChhhcCCccchHHHHHHHHHHHHH
Confidence            999  999 999999999999999999999999999999886

>KOG1305|consensus

Probab=100.00  E-value=1.4e-34  Score=309.46  Aligned_cols=341  Identities=17%  Similarity=0.214  Sum_probs=257.3

Q ss_pred             cCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819         14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV   93 (675)
Q Consensus        14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~   93 (675)
                      .++++|..++++|+.|+++|+|+|++|+||++.|++.|++++.++|.++.++.+++.+|+++..      .++|+++++.
T Consensus         2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~------~~ty~~l~~~   75 (411)
T KOG1305|consen    2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG------ERTYSSLGDL   75 (411)
T ss_pred             CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC------CCCHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999999999988653      2499999999


Q ss_pred             HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCc------cHHH-HHHHHHHHHHHhhc
Q psy12819         94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTEL------DIRV-YISAFLIPLILLSW  166 (675)
Q Consensus        94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~------~~~~-~~~i~~~~~~pl~~  166 (675)
                      ++          |+.++....+.......| |++|+++++|.++.........+.      +++. +++..+.++.|+++
T Consensus        76 ~~----------g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl  144 (411)
T KOG1305|consen   76 IF----------GKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSL  144 (411)
T ss_pred             Hc----------CCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHH
Confidence            98          566666666666666666 799999999999977665432221      2222 45667889999999


Q ss_pred             ccCccccchhhhHHHHHHHHHhheeEEEEcccC---CCCC-CCCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCC
Q psy12819        167 VPNLKSLAPVSMVANLLMGTGLGITFYYIVWDL---HKPM-EMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSR  242 (675)
Q Consensus       167 ~~~l~~L~~~S~~~~~~~~~~~~ii~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~  242 (675)
                      .|++++|++.|.++.++......++.++.....   ++.. +.+....+++...++|+++|||.||.|+.++++|     
T Consensus       145 ~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~E-----  219 (411)
T KOG1305|consen  145 LKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNE-----  219 (411)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeee-----
Confidence            999999999999999998876666665554422   1111 1111122257999999999999999999999999     


Q ss_pred             CchhhhhhhcCCCCcccccceeEEeEEEEEe-------echhchhHHhhc----CCCCCch-----hhHHHHHHHHHHHH
Q psy12819        243 PVISRELMIGNGRDHNVQCGHVLYRRTKVTS-------MSFADIGEVAFA----KGPAWGR-----RYARFARICILLGL  306 (675)
Q Consensus       243 ~~~~~~~M~~~p~~~~~~~~v~~~~~~iv~~-------lGY~~fG~~~~~----nlp~~~~-----~~~~~~~l~~~l~~  306 (675)
                             | |||++.+. .++...+....++       .||+.|||++++    |+|++.+     +....+|..+++++
T Consensus       220 -------l-~~~s~~~i-~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~  290 (411)
T KOG1305|consen  220 -------L-KDRSVKKI-QRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAV  290 (411)
T ss_pred             -------e-eCchHHHH-HHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHH
Confidence                   9 88877442 1133222221111       299999999999    5554411     23589999999999


Q ss_pred             Hhhhcc--eee--EEeHHHhhhcCCC-CccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHH
Q psy12819        307 FLAYFG--TCS--VYTVIIAKNFSKS-SKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVAN  380 (675)
Q Consensus       307 ~~s~Pl--~p~--~l~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~  380 (675)
                      ++++|+  +|+  .+.+.+.++.+++ +..+.|.             +-+.+.++...++.|+.+|++++++++ |++++
T Consensus       291 ~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~-------------~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~  357 (411)
T KOG1305|consen  291 LLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRH-------------FVITLLLLIFTFLLAIFVPSIGTIFGFVGATSS  357 (411)
T ss_pred             HHHHHHHhchHHHHHHHHhcccCCCCCCccceeh-------------hHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhh
Confidence            999999  999  3333333222211 1111111             112234677789999999999999999 99999


Q ss_pred             HHHhhhhhhhhheeeccc
Q psy12819        381 LLMGTGLGITFYYIVYKV  398 (675)
Q Consensus       381 ~~l~filP~~fy~~~~~~  398 (675)
                      ..++|++|+.+|+|..|.
T Consensus       358 ~~i~FI~P~~~yl~~~~~  375 (411)
T KOG1305|consen  358 TSISFILPALYYLKASKK  375 (411)
T ss_pred             hhhHHHHHHHhhheeecc
Confidence            999999999999998883

>KOG4303|consensus

Probab=99.98  E-value=4.3e-35  Score=289.85  Aligned_cols=346  Identities=15%  Similarity=0.206  Sum_probs=279.8

Q ss_pred             CCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc--CCCCCCHHHHHHH
Q psy12819         16 NIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRT--KVTSMSFADIGEV   93 (675)
Q Consensus        16 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~--~~~~~sy~~l~~~   93 (675)
                      .+.+.+++..|..|++-|.=+++||+|....||+ ++..++.+|.+|.||..+|++|..+-++.-  -+..+||.++|..
T Consensus       115 ~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~  193 (524)
T KOG4303|consen  115 EKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADF  193 (524)
T ss_pred             CccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHH
Confidence            4678999999999999999999999999999997 999999999999999999999997654210  0124799999999


Q ss_pred             HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcccc
Q psy12819         94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSL  173 (675)
Q Consensus        94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L  173 (675)
                      ++  +|       ..|.+.+.+.+.+.+..+|+.|++..+|.++..++.   ...+.+.|+.+..+.++|.+++|+++..
T Consensus       194 C~--~P-------~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~---~svd~~sWm~i~~a~LLpc~FLk~Lk~V  261 (524)
T KOG4303|consen  194 CY--KP-------GLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG---LSVDKASWMMITSASLLPCSFLKDLKIV  261 (524)
T ss_pred             hc--CC-------CcchheeeHHHHHHHHHHHHhhhheechhhhccCCC---CCccccchhhhhhHHHhhhHHHHHHHHH
Confidence            97  33       234567889999999999999999999999888764   3578999999999999999999999999


Q ss_pred             chhhhHHHHHHHHHhheeEEEEcccCCCC--CCCCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhh
Q psy12819        174 APVSMVANLLMGTGLGITFYYIVWDLHKP--MEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMI  251 (675)
Q Consensus       174 ~~~S~~~~~~~~~~~~ii~~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~  251 (675)
                      +.+|++..++-++.-++++.|+.....++  +..+...|...+|..+|+++|+|..|...|.++.+            | 
T Consensus       262 S~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGN------------M-  328 (524)
T KOG4303|consen  262 SRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGN------------M-  328 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccc------------c-
Confidence            99999999988877777777776554443  34444457788999999999999999999999999            9 


Q ss_pred             cCCCCcccccceeEEeEEEEEe-------echhchhHHhhc----CCCCCchhhHHHHHHHHHHHHHhhhcc--eee--E
Q psy12819        252 GNGRDHNVQCGHVLYRRTKVTS-------MSFADIGEVAFA----KGPAWGRRYARFARICILLGLFLAYFG--TCS--V  316 (675)
Q Consensus       252 ~~p~~~~~~~~v~~~~~~iv~~-------lGY~~fG~~~~~----nlp~~~~~~~~~~~l~~~l~~~~s~Pl--~p~--~  316 (675)
                      ++|.+|+.   .+.|+-+...+       +||++|||.||+    |+|+.  -+...+++++.+-.++|||+  +.+  .
T Consensus       329 ~~ps~Fn~---Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~q--sfk~~VN~fLV~KALLSYPLPfyAAvel  403 (524)
T KOG4303|consen  329 KNPSQFNV---MLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPNQ--SFKILVNLFLVVKALLSYPLPFYAAVEL  403 (524)
T ss_pred             CChhHhee---eeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCcc--chhhhhhHHHHHHHHHcCCchHHHHHHH
Confidence            99999997   66665443332       299999999998    99985  68899999999999999999  555  5


Q ss_pred             EeHHHhhhcCCCCcccc-chhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHHHHhhhhhhhhhee
Q psy12819        317 YTVIIAKNFSKSSKISI-RISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANLLMGTGLGITFYYI  394 (675)
Q Consensus       317 l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~~l~filP~~fy~~  394 (675)
                      +++.+....++.+..+- ......++|   .+-+|+.  +++.+.++|+++|+|..++++ |++.+..++|+.|++||++
T Consensus       404 Le~nlF~g~p~t~Fpscys~Dg~Lk~W---gltlR~~--lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~  478 (524)
T KOG4303|consen  404 LENNLFLGYPQTPFPSCYSPDGSLKEW---GLTLRII--LVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLY  478 (524)
T ss_pred             HHHhhhcCCCCCCCceeeCCCcchhhh---eeeeeeH--HHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHH
Confidence            66665543332221110 000111222   3556776  488899999999999999998 8888889999999999999


Q ss_pred             ecc
Q psy12819        395 VYK  397 (675)
Q Consensus       395 ~~~  397 (675)
                      ++.
T Consensus       479 ik~  481 (524)
T KOG4303|consen  479 IKE  481 (524)
T ss_pred             HHH
Confidence            886

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.93  E-value=1.2e-26  Score=251.94  Aligned_cols=350  Identities=17%  Similarity=0.140  Sum_probs=251.2

Q ss_pred             CccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819         12 TESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG   91 (675)
Q Consensus        12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~   91 (675)
                      +..+++.+..++++++.+|++|+|+|++|++++..|++++++++++.+.+++++.+++.|+.++.+++    ..+|.+++
T Consensus         3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~----~~~~~~~~   78 (415)
T COG0814           3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG----KASITSLV   78 (415)
T ss_pred             ccccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----cccHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999876432    24999999


Q ss_pred             HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCC-ccHHHHHHHHHHHHHHhhcccCc
Q psy12819         92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTE-LDIRVYISAFLIPLILLSWVPNL  170 (675)
Q Consensus        92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~-~~~~~~~~i~~~~~~pl~~~~~l  170 (675)
                      ++.+          ||++++++++.+.+.+|+.+++|.+..+|.+++.+++....+ .+++.+.+++..++.++++.++.
T Consensus        79 ~~~~----------G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~  148 (415)
T COG0814          79 EDYL----------GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTL  148 (415)
T ss_pred             HHHh----------CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchh
Confidence            9998          788999999999999999999999999999999999865544 67888888889999999999999


Q ss_pred             cccchhhhHHHHHHHHHhheeEEEEcccCCC-CCCCCC--CCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhh
Q psy12819        171 KSLAPVSMVANLLMGTGLGITFYYIVWDLHK-PMEMPQ--IADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISR  247 (675)
Q Consensus       171 ~~L~~~S~~~~~~~~~~~~ii~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~  247 (675)
                      ..++..|.+....+....+...+......++ ....+.  ..++..+..++|+++|||+||++++++++|          
T Consensus       149 ~~lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~----------  218 (415)
T COG0814         149 AVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNY----------  218 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHH----------
Confidence            9999999999887665554444433221111 111111  235667899999999999999999999999          


Q ss_pred             hhhhcCCCC--cccccceeEEeEEE---EEee----chhchhHHhhc----CCCCC------------chhhHHHHHHHH
Q psy12819        248 ELMIGNGRD--HNVQCGHVLYRRTK---VTSM----SFADIGEVAFA----KGPAW------------GRRYARFARICI  302 (675)
Q Consensus       248 ~~M~~~p~~--~~~~~~v~~~~~~i---v~~l----GY~~fG~~~~~----nlp~~------------~~~~~~~~~l~~  302 (675)
                        | |++++  .+|   ....+..+   +++.    +|..+|+++.+    |.+++            .+......+++-
T Consensus       219 --~-~~~~~~~~~k---~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~  292 (415)
T COG0814         219 --M-RKNSKKAVRK---AILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFA  292 (415)
T ss_pred             --h-ccchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHH
Confidence              9 55544  555   33322221   1111    89999988776    44433            033555666666


Q ss_pred             HHHHHhhhcceeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccchh-hhHHHH
Q psy12819        303 LLGLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV-SMVANL  381 (675)
Q Consensus       303 ~l~~~~s~Pl~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~~-g~~~~~  381 (675)
                      .+++..||--++.-+.+.+.+.+++++.+..|.+..      .....+..+..++.+..++...|+.+.+++. |+....
T Consensus       293 ~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~------~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~  366 (415)
T COG0814         293 LFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTG------LLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIP  366 (415)
T ss_pred             HHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhh------hhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            666666543344423444444443322111121110      0112233334566778888999988877764 666666


Q ss_pred             HHhhhhhhhhheeecc
Q psy12819        382 LMGTGLGITFYYIVYK  397 (675)
Q Consensus       382 ~l~filP~~fy~~~~~  397 (675)
                      .+.++.|..+++|...
T Consensus       367 ~ll~~~p~~~~~~~~~  382 (415)
T COG0814         367 ALLFIKPRKLIYKLPA  382 (415)
T ss_pred             HHHHHHHHHhcCCCCc
Confidence            7777777666655444

>PTZ00206 amino acid transporter; Provisional

Probab=99.85  E-value=4.8e-21  Score=212.02  Aligned_cols=217  Identities=13%  Similarity=0.093  Sum_probs=145.7

Q ss_pred             CCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHHHHhh-hhh
Q psy12819        432 PVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALC-VRF  510 (675)
Q Consensus       432 ~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~~~~~-~~~  510 (675)
                      +.+..++++|++|+.+|+|+|+||+||+++||++|++++++++.++.||+++|.+++++++.++|+|.++.+.+-. +..
T Consensus        59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~~sY~~la~~~~G~~g~~~  138 (467)
T PTZ00206         59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNIRTYEGVARVLLGPWGSYY  138 (467)
T ss_pred             CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHhCHHHHHH
Confidence            3567899999999999999999999999999999999999999999999999988777776677777766653110 000


Q ss_pred             -------ccceeee-ehHHHHHHHHHHHhhhcC-----CCC-cchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q psy12819        511 -------DLYSRFE-LSSKISIRISQVINHYTG-----TEL-DIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGT  576 (675)
Q Consensus       511 -------g~~~~~~-~~i~~~~~l~~~~~~~~~-----~~~-~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~  576 (675)
                             ..++.+. +.++++|++++++.....     ... ++..+..+..++++|++++||+++|+|+|.+|++++++
T Consensus       139 v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~  218 (467)
T PTZ00206        139 VAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVY  218 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHH
Confidence                   0111111 226799999888753211     111 22233344566779999999999999999999999998


Q ss_pred             HHhheeeeeecccccccccccCcceeeccccCCCCCcccccccCCCCccchhhhhhhhcccccccccccchhhhc--cCc
Q psy12819        577 GLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRN--AGL  654 (675)
Q Consensus       577 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~g~~~~~~~~~m~~--~~~  654 (675)
                      .++.++++.+.+..  + ++.+ .++.. ..+..++..|. ..-+.+..++..+|+|++  -.. ++++++.|||  |++
T Consensus       219 ~vi~ivi~~~~~~~--~-~~~~-~~~~~-~~~~~~~~~f~-~~~~~~~algi~~faF~~--h~~-~~~i~~~M~~~t~~~  289 (467)
T PTZ00206        219 LVIVIVVHSCMNGL--P-ENIK-NVSVG-KDDNAEIILFN-SGNRAIEGLGVFIFAYVF--QIT-AYEVYMDMTNRSVGK  289 (467)
T ss_pred             HHhhhhhhhhcccC--c-cccc-ccccC-CCCCCceEEec-CchHHHhhhhHHHhhhhh--hhh-hHHHHHhhcccchhH
Confidence            88877766543211  0 0111 01100 00111121220 001234567889999988  777 8899999988  455


Q ss_pred             ccc
Q psy12819        655 TGG  657 (675)
Q Consensus       655 ~~~  657 (675)
                      +..
T Consensus       290 ~~~  292 (467)
T PTZ00206        290 FVL  292 (467)
T ss_pred             HHH
Confidence            554

>PRK10483 tryptophan permease; Provisional

Probab=99.84  E-value=2.3e-21  Score=207.11  Aligned_cols=337  Identities=9%  Similarity=0.063  Sum_probs=235.0

Q ss_pred             CccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819         12 TESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG   91 (675)
Q Consensus        12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~   91 (675)
                      ..++++.+..++++-+..|+||+|+|+||.+.++.|+.++++++++++..+.||..++.|+..+.+     +..++..++
T Consensus         5 ~~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~-----~g~~~~tma   79 (414)
T PRK10483          5 TTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR-----IGSSFDTIT   79 (414)
T ss_pred             ccccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCHHHHH
Confidence            345677899999999999999999999999999999999999999999999999999999987653     247999999


Q ss_pred             HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcc
Q psy12819         92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLK  171 (675)
Q Consensus        92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~  171 (675)
                      |+.+          ||.++.+.+++..+..|+.+++|+.-.+|.+++.+++ .+.+.+.+.-.+++.++.-...+.. .+
T Consensus        80 ~~~L----------G~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~-~~~~i~~~~~~llF~~~~~~iv~~g-t~  147 (414)
T PRK10483         80 KDLL----------GKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAE-MSLNVPARAAGFGFALLVAFVVWLS-TK  147 (414)
T ss_pred             HHHc----------ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHh-cCCCCcHHHHHHHHHHHHHHHHHhh-hh
Confidence            9998          7889999999999999999999999999999999987 3445566665566666665555543 24


Q ss_pred             ccchhhhHHHHHHHHHhheeEEEEcccCC--CCCCC--CCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhh
Q psy12819        172 SLAPVSMVANLLMGTGLGITFYYIVWDLH--KPMEM--PQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISR  247 (675)
Q Consensus       172 ~L~~~S~~~~~~~~~~~~ii~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~  247 (675)
                      ...+.+.+=....+..++..+.....+..  ...+.  ....++...+.++|++++||+.|+++|++.+.          
T Consensus       148 ~vd~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y----------  217 (414)
T PRK10483        148 AVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKY----------  217 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHH----------
Confidence            44444433333232222222111111111  00011  11112345789999999999999999999888          


Q ss_pred             hhhhcCCCCcccccceeEEeEEEEEeechhchhHHhh--------------c-CC----------CCCchhhHHHHHHHH
Q psy12819        248 ELMIGNGRDHNVQCGHVLYRRTKVTSMSFADIGEVAF--------------A-KG----------PAWGRRYARFARICI  302 (675)
Q Consensus       248 ~~M~~~p~~~~~~~~v~~~~~~iv~~lGY~~fG~~~~--------------~-nl----------p~~~~~~~~~~~l~~  302 (675)
                        +++|++|.+|   ++..+..+..++ |+.|--.+.              + |+          .++ ........++.
T Consensus       218 --~~~d~~kir~---~I~iGs~Iplv~-yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~-~~i~~~~~~Fa  290 (414)
T PRK10483        218 --YGKDPKTIVK---CLVYGTLMALAL-YTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNS-RSLDLLLVVFS  290 (414)
T ss_pred             --hCcCHHHHHH---HHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCC-hHHHHHHHHHH
Confidence              7556676666   444433322221 222211111              1 22          122 35557778888


Q ss_pred             HHHHHhhhcceeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCC-ccccchh-hhHHH
Q psy12819        303 LLGLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPN-LKSLAPV-SMVAN  380 (675)
Q Consensus       303 ~l~~~~s~Pl~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~-~~~v~~~-g~~~~  380 (675)
                      .+++.+||--+..-+.|.+.|.++.+++...|.+              +.++++++|.++|...|+ |=..+++ |.. +
T Consensus       291 ~~Ai~TSFlGv~LGL~d~l~D~~k~~~~~~~r~~--------------~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~  355 (414)
T PRK10483        291 NFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFK--------------TALLTFLPPVVGGLLFPNGFLYAIGYAGLA-A  355 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCcccccee--------------eehhhHhhHHHHHHHhHHHHHHHHHHHHHH-H
Confidence            8899888855322447778887776654334432              223469999999999999 7777788 655 5


Q ss_pred             HHHhhhhhhhhheeecc
Q psy12819        381 LLMGTGLGITFYYIVYK  397 (675)
Q Consensus       381 ~~l~filP~~fy~~~~~  397 (675)
                      ..+.-++|+..-+|.||
T Consensus       356 ~il~~ilP~lM~~~~Rk  372 (414)
T PRK10483        356 TIWAAIVPALLARASRK  372 (414)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            57778999999999886

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.84  E-value=2e-21  Score=207.44  Aligned_cols=334  Identities=11%  Similarity=0.062  Sum_probs=229.4

Q ss_pred             CCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHH
Q psy12819         16 NIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAF   95 (675)
Q Consensus        16 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~   95 (675)
                      +|.+...+++-+..|+||+|+|+||.+-++.|+.++++++++++..+.||..++.|+..+++     +..++..++|+.+
T Consensus         7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~-----~g~~l~tma~~~L   81 (415)
T PRK09664          7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP-----VGSSFNTITKDLI   81 (415)
T ss_pred             hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCHHHHHHHHc
Confidence            44588889999999999999999999999999999999999999999999999999987653     3479999999998


Q ss_pred             hcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccch
Q psy12819         96 AKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAP  175 (675)
Q Consensus        96 ~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~  175 (675)
                                ||.++.+.++...+..|+.+++|+.-.++.+++.++...+.+.+.+...+++.++.-+..+..+ +...+
T Consensus        82 ----------G~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~  150 (415)
T PRK09664         82 ----------GNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS-LAASR  150 (415)
T ss_pred             ----------ChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch-hHHHH
Confidence                      7889999999999999999999999999999999986444455666555556665555555442 44444


Q ss_pred             hhhHHHHHHHHHhheeEEEEcccC--CCCCCCCCCCC----CCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhh
Q psy12819        176 VSMVANLLMGTGLGITFYYIVWDL--HKPMEMPQIAD----ISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISREL  249 (675)
Q Consensus       176 ~S~~~~~~~~~~~~ii~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~  249 (675)
                      .+.+=....+.+++..+.....+.  +...+.+...+    +..+..++|++++||+.|+++|++.+.            
T Consensus       151 ~nr~l~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y------------  218 (415)
T PRK09664        151 ITSLFLGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIIC------------  218 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHH------------
Confidence            433222222222222111111111  00111111111    224778999999999999999999998            


Q ss_pred             hhcCCCCcccccceeEEeEEEEEeechhchhHHhhc---------------CCC----------CCchhhHHHHHHHHHH
Q psy12819        250 MIGNGRDHNVQCGHVLYRRTKVTSMSFADIGEVAFA---------------KGP----------AWGRRYARFARICILL  304 (675)
Q Consensus       250 M~~~p~~~~~~~~v~~~~~~iv~~lGY~~fG~~~~~---------------nlp----------~~~~~~~~~~~l~~~l  304 (675)
                      +++|++|.+|   .+..+..+..+ .|..+-..+.+               |++          ++ .+......++..+
T Consensus       219 ~~~d~~~~~k---aIl~Gs~IpLv-iY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~-~~i~~~~~~Fa~~  293 (415)
T PRK09664        219 YGKRKDKLIK---SVVFGSLLALV-IYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQH-GIIEFCLLVFSNL  293 (415)
T ss_pred             hCccHHHHHH---HHHHHHHHHHH-HHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccC-hHHHHHHHHHHHH
Confidence            7456666665   22222211111 23222111111               221          22 4566677788888


Q ss_pred             HHHhhhcceeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCC-ccccchh-hhHHHHH
Q psy12819        305 GLFLAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPN-LKSLAPV-SMVANLL  382 (675)
Q Consensus       305 ~~~~s~Pl~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~-~~~v~~~-g~~~~~~  382 (675)
                      ++.+||--+...+.|.+.|.++.+++...|.+              +.++++++|++++...|+ |=..+++ |.. +.+
T Consensus       294 Ai~TSFlGv~LGL~D~l~D~~~~~~~~~~r~~--------------~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~i  358 (415)
T PRK09664        294 AVASSFFGVTLGLFDYLADLFKIDNSHGGRFK--------------TVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATI  358 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCcccccee--------------eehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHH
Confidence            88888855333447778887766654444432              223469999999999999 7777888 664 668


Q ss_pred             Hhhhhhhhhheeecc
Q psy12819        383 MGTGLGITFYYIVYK  397 (675)
Q Consensus       383 l~filP~~fy~~~~~  397 (675)
                      +.-++|++.-||.||
T Consensus       359 l~~ilP~lM~~~~Rk  373 (415)
T PRK09664        359 WAVIIPAVLAIKARK  373 (415)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            888999999999886

>PLN03074 auxin influx permease; Provisional

Probab=99.83  E-value=1.3e-20  Score=207.72  Aligned_cols=205  Identities=13%  Similarity=0.115  Sum_probs=141.9

Q ss_pred             cCCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhh-----ccCCCC-----chhHh
Q psy12819        428 KLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGW-----RNTDPL-----AESFT  497 (675)
Q Consensus       428 ~~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-----~~~~~~-----~~~~~  497 (675)
                      ...+++|..+|.+|++|..+|+|||+||+||+++||++|++++++++++++||.++|.+     |.|++.     .+...
T Consensus        41 ~~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~  120 (473)
T PLN03074         41 LLWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI  120 (473)
T ss_pred             cccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHH
Confidence            34567899999999999999999999999999999999999999999999999999864     222222     22335


Q ss_pred             hHHHHHHHhhhhhccce----eeeeh--------HHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHhhcCCCCCchhH
Q psy12819        498 RYRNSIHALCVRFDLYS----RFELS--------SKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAP  565 (675)
Q Consensus       498 ~~~~~~~~~~~~~g~~~----~~~~~--------i~~~~~l~~~~~~~~~~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~  565 (675)
                      +|.|.+....++.+...    .+...        +..++++.++     +..++.+.|+++..++.+|++++|++++++|
T Consensus       121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l-----~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~  195 (473)
T PLN03074        121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYI-----NDNLDKRTWTYIFGACCATTVFIPSFHNYRI  195 (473)
T ss_pred             HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhh-----CCCcCCCeEEeehHHHHHHHHHccCHHHHHH
Confidence            67777654422211111    11111        1233443333     2456788999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhheeeeeecccccccccccCcceeeccccCCCCCcccccccCCCCccc---hhhhhhhhcccccccc
Q psy12819        566 VSMVANLLMGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTD---GETLTHLLKASLGTGI  642 (675)
Q Consensus       566 ~S~~a~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~P~~~---~~~~~~~~~~~~g~~~  642 (675)
                      +|.++..++++..++++.....+-       .++.++     ++ ...       +.+.++   +..+|+++|  .|+ .
T Consensus       196 ~S~ig~~~tl~~av~i~i~~i~~~-------~~~~~~-----~~-~~~-------~~~~~f~~~~~i~faf~g--~~v-~  252 (473)
T PLN03074        196 WSFLGLLMTTYTAWYMTIAALSHG-------QVEGVK-----HS-GPT-------KLVLYFTGATNILYTFGG--HAV-T  252 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhc-------CCCCCC-----CC-Cch-------hHHHHHHHHHHHHHHhcc--ccc-H
Confidence            999999987765554443222211       111111     00 000       133344   347999999  999 9


Q ss_pred             cccchhhhccCcccchHH
Q psy12819        643 LSMPYAFRNAGLTGGIFL  660 (675)
Q Consensus       643 ~~~~~~m~~~~~~~~~~~  660 (675)
                      ++++++||||++|.+...
T Consensus       253 ~~I~~~M~~P~~F~~~~~  270 (473)
T PLN03074        253 VEIMHAMWKPQKFKYIYL  270 (473)
T ss_pred             HHHHHhccChhcccchHH
Confidence            999999999999997643

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.82  E-value=9e-21  Score=204.62  Aligned_cols=334  Identities=15%  Similarity=0.168  Sum_probs=233.1

Q ss_pred             CCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHH
Q psy12819         16 NIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAF   95 (675)
Q Consensus        16 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~   95 (675)
                      ++.+.+++++.+..+++|+|+|+||.+.+..|++++++.+++++.++++|..++.|...+..     +..+|.+++++.+
T Consensus         1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~-----~~~~~~~~a~~~l   75 (394)
T PF03222_consen    1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP-----EGSSLTSMAEKYL   75 (394)
T ss_pred             CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHh
Confidence            35678999999999999999999999999999999999999999999999999999887543     2589999999998


Q ss_pred             hcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccch
Q psy12819         96 AKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAP  175 (675)
Q Consensus        96 ~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~  175 (675)
                                ||++++++.+...+..|+.+++|..-.++.+++.++...+.+.+.+...+++.++...+.+.. .+...+
T Consensus        76 ----------G~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g-~~~v~~  144 (394)
T PF03222_consen   76 ----------GKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFG-TKAVDR  144 (394)
T ss_pred             ----------ChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhh-HHHHHH
Confidence                      789999999999999999999999999999999999876555666665555444443333332 223344


Q ss_pred             hhhHHHHHHHHHhheeEEEEccc--CCCCCC-CCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhc
Q psy12819        176 VSMVANLLMGTGLGITFYYIVWD--LHKPME-MPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIG  252 (675)
Q Consensus       176 ~S~~~~~~~~~~~~ii~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~  252 (675)
                      .+.+-+...+..+.....+...+  .+...+ .+...++...+.++|++++||+.|+.+|++.+.            +++
T Consensus       145 ~n~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~------------~~~  212 (394)
T PF03222_consen  145 INRVLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKY------------LGG  212 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHH------------hCc
Confidence            43333332332222222111111  111111 112346778899999999999999999999988            755


Q ss_pred             CCCCcccccceeEEeEEEEEeechhc-----hh--------------HHhhc------CCCCCchhhHHHHHHHHHHHHH
Q psy12819        253 NGRDHNVQCGHVLYRRTKVTSMSFAD-----IG--------------EVAFA------KGPAWGRRYARFARICILLGLF  307 (675)
Q Consensus       253 ~p~~~~~~~~v~~~~~~iv~~lGY~~-----fG--------------~~~~~------nlp~~~~~~~~~~~l~~~l~~~  307 (675)
                      |++|.+|   .+.++..+..++ |..     .|              ++..+      +..++ .+......++-.+++.
T Consensus       213 d~~k~~~---ai~~Gs~i~lv~-yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~fa~~Ai~  287 (394)
T PF03222_consen  213 DPKKIRK---AIIIGSLIPLVM-YLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGS-PWISILGSIFAFFAIA  287 (394)
T ss_pred             cHHHHHH---HHHHHHHHHHHH-HHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCC-cHHHHHHHHHHHHHHH
Confidence            7777776   333332221111 111     12              01111      22233 4667778899999999


Q ss_pred             hhhcceeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCC-ccccchh-hhHHHHHHhh
Q psy12819        308 LAYFGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPN-LKSLAPV-SMVANLLMGT  385 (675)
Q Consensus       308 ~s~Pl~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~-~~~v~~~-g~~~~~~l~f  385 (675)
                      +||--+...+.|.+.|.++.+++...|.+              .....+++++++|...|+ |-..+++ | .+...+..
T Consensus       288 TSFlGv~lgl~d~l~d~~k~~~~~~~r~~--------------~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~  352 (394)
T PF03222_consen  288 TSFLGVYLGLFDFLADLFKLKNNSSGRLK--------------TWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLG  352 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCccccchHH--------------HHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHH
Confidence            99854222447777777765443333322              333468889999999998 6677788 7 78889999


Q ss_pred             hhhhhhheeecc
Q psy12819        386 GLGITFYYIVYK  397 (675)
Q Consensus       386 ilP~~fy~~~~~  397 (675)
                      ++|++..||.|+
T Consensus       353 ilP~~m~~~~r~  364 (394)
T PF03222_consen  353 ILPALMVWKARK  364 (394)
T ss_pred             HHHHHHHHHHHc
Confidence            999999999776

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.81  E-value=3.4e-20  Score=199.16  Aligned_cols=331  Identities=13%  Similarity=0.123  Sum_probs=223.4

Q ss_pred             CChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhc
Q psy12819         18 GKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAK   97 (675)
Q Consensus        18 ~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~   97 (675)
                      .+..++++.+..|++|+|+|+||.+.+..|++++++++++++.++.|+++++.|+..+.     ++..++.+++++.+  
T Consensus         3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~-----~~~~~~~~~a~~~L--   75 (403)
T PRK15132          3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHV-----PADTGLGTLAKRYL--   75 (403)
T ss_pred             ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCCCHHHHHHHHh--
Confidence            37889999999999999999999999999999999999999999999999999965432     23478999999998  


Q ss_pred             CCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhh
Q psy12819         98 GPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVS  177 (675)
Q Consensus        98 g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S  177 (675)
                              ||+++++..+...+..|..+++|..-.++.+.+.++++.+.+.+.+...+++.++.....+.. .+...+.+
T Consensus        76 --------G~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g-~~~v~~~n  146 (403)
T PRK15132         76 --------GRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVG-TSSVDLFN  146 (403)
T ss_pred             --------ChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhcc-HHHHHHHH
Confidence                    788999999999999999999999999999999998765545555544444444433333332 23333333


Q ss_pred             hHHHHHHHHHhheeEEEEcccC--CCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhcCCC
Q psy12819        178 MVANLLMGTGLGITFYYIVWDL--HKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGR  255 (675)
Q Consensus       178 ~~~~~~~~~~~~ii~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~~p~  255 (675)
                      -+=+...+..++....+...+.  ....+.++  +.+.++..+|++.+||+.|+++|++.+.            ++++++
T Consensus       147 ~~L~~~~ii~~~~~~~~l~p~~~~~~L~~~~~--~~~~~~~~iPvl~~SFgfh~iIpsl~~y------------~~~~~~  212 (403)
T PRK15132        147 RFLFSAKIIFLVVMLALMMPHIHKVNLLTLPL--QQGLALSAIPVIFTSFGFHGSVPSIVSY------------MGGNIR  212 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHhcCCc--cccHHHHHHHHHHHHhhCCcccHHHHHH------------hCcCHH
Confidence            3322222222222111111111  11111111  1224889999999999999999999998            745667


Q ss_pred             CcccccceeEEeEEEEEeechhchhHHhhc-------------C------------CCCCchhhHHHHHHHHHHHHHhhh
Q psy12819        256 DHNVQCGHVLYRRTKVTSMSFADIGEVAFA-------------K------------GPAWGRRYARFARICILLGLFLAY  310 (675)
Q Consensus       256 ~~~~~~~v~~~~~~iv~~lGY~~fG~~~~~-------------n------------lp~~~~~~~~~~~l~~~l~~~~s~  310 (675)
                      |.+|   ++..+..+..+ .|+.|--.+.+             |            ..++ .+...++.++..+++.+||
T Consensus       213 ~~~k---~i~~Gs~i~li-~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~~~~~fa~~Ai~TSF  287 (403)
T PRK15132        213 KLRW---VFIIGSAIPLV-AYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVAS-PHVELAVHLFADLALATSF  287 (403)
T ss_pred             HHHH---HHHHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccC-hHHHHHHHHHHHHHHHHHH
Confidence            7776   44333322221 12222111111             1            1123 4666777888888888888


Q ss_pred             cceeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCC-ccccchhhhHHHHHHhhhhhh
Q psy12819        311 FGTCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPN-LKSLAPVSMVANLLMGTGLGI  389 (675)
Q Consensus       311 Pl~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~-~~~v~~~g~~~~~~l~filP~  389 (675)
                      --+...+.|.+.|.++++++...|.+              +.+.++++++++|...|+ |...+++++.....+.+++|+
T Consensus       288 lGv~lgl~d~l~d~~~~~~~~~~r~~--------------~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~  353 (403)
T PRK15132        288 LGVALGLFDYLADLFQRRNTVGGRLQ--------------TGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPS  353 (403)
T ss_pred             HHHHHHHHHHHHHHHccCccccCCch--------------hehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55222447777776654433222221              223468999999999999 677777833456788999999


Q ss_pred             hhheeecc
Q psy12819        390 TFYYIVYK  397 (675)
Q Consensus       390 ~fy~~~~~  397 (675)
                      +.-||.|+
T Consensus       354 ~m~~~~r~  361 (403)
T PRK15132        354 LLVWQSRK  361 (403)
T ss_pred             HHHHHHhh
Confidence            99999876

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.77  E-value=6.2e-20  Score=201.21  Aligned_cols=227  Identities=20%  Similarity=0.210  Sum_probs=157.5

Q ss_pred             CCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCC----CCchhHhhHHHHHHHh
Q psy12819        431 HPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTD----PLAESFTRYRNSIHAL  506 (675)
Q Consensus       431 ~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~----~~~~~~~~~~~~~~~~  506 (675)
                      ||+|++++++|++|+++|+|+|+||+||+++||+.|++++++++.++.||.++|.+++++    ++.++|+|.++...+.
T Consensus         1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~   80 (409)
T PF01490_consen    1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGP   80 (409)
T ss_pred             CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccc
Confidence            578999999999999999999999999999999999999999999999999999887664    2344555544433211


Q ss_pred             -hhhhc-------cceee-eehHHHHHHHHHHHhhhcC-CCCcchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHH
Q psy12819        507 -CVRFD-------LYSRF-ELSSKISIRISQVINHYTG-TELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGT  576 (675)
Q Consensus       507 -~~~~g-------~~~~~-~~~i~~~~~l~~~~~~~~~-~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~  576 (675)
                       .+.+.       .++.. .+.++++|+++++.+...+ ...++..+.++..++++|++++||+++++++|.++++++++
T Consensus        81 ~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~  160 (409)
T PF01490_consen   81 KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFY  160 (409)
T ss_pred             cccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhccce
Confidence             00000       01111 1124588888888766543 35677888888888889999999999999999999999988


Q ss_pred             HHhheeeeeecccccccccccCcceeeccccCCCCCcccccccCCCCccchhhhhhhhcccccccccccchhhhccCccc
Q psy12819        577 GLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTG  656 (675)
Q Consensus       577 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~g~~~~~~~~~m~~~~~~~  656 (675)
                      .+..+.++........+.+...+.     .++...+       .+.+..++...|++.+  -+. +.++.+.||+|+++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-------~~~~~~~~i~~faf~~--~~~-~~~i~~~m~~~~~~~  225 (409)
T PF01490_consen  161 FIVIVVIYIISYGPGEPSGVPSPP-----VWPFISF-------SGFFSAFGIIIFAFSC--HPN-LPPIQSEMKDPSKFK  225 (409)
T ss_pred             eeeeecceeeeeeccccccccccc-----ccccchh-------hHHHHhhhhhhhhhhc--ccc-cceeeeeccCCcccc
Confidence            644444444443321111111110     1111222       2466788999999988  777 999999999999977


Q ss_pred             chHHHHHHHHHHhhhc
Q psy12819        657 GIFLTVLVAVICTHCS  672 (675)
Q Consensus       657 ~~~~~~~~~~~~~~~~  672 (675)
                      ..-..+...++++..+
T Consensus       226 ~~~~~~~~s~~~~~~~  241 (409)
T PF01490_consen  226 KMKKVLSISMIICFII  241 (409)
T ss_pred             ccceeeeehhhhhhHH
Confidence            4444444444433333

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1303|consensus

Probab=99.76  E-value=4.7e-18  Score=183.31  Aligned_cols=152  Identities=22%  Similarity=0.283  Sum_probs=116.6

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCCC---CchhHhhHHHHHHH
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDP---LAESFTRYRNSIHA  505 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~---~~~~~~~~~~~~~~  505 (675)
                      .+++.||++|.+|.+++.+|.|+|+||+|++++||+.|+++++..++++.||..+|.++.+..   ..+.+.+|.|++++
T Consensus        34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~  113 (437)
T KOG1303|consen   34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA  113 (437)
T ss_pred             cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence            456689999999999999999999999999999999999999999999999999886543322   12233455555555


Q ss_pred             hhhhhccceeeeeh---------------HHHHHHHHHHHhhhcCC--CCcchhHHHHHHHHHHHhhcCCCCCchhHHHH
Q psy12819        506 LCVRFDLYSRFELS---------------SKISIRISQVINHYTGT--ELDIRVYISAFLIPLILLSWVPNLKSLAPVSM  568 (675)
Q Consensus       506 ~~~~~g~~~~~~~~---------------i~~~~~l~~~~~~~~~~--~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~  568 (675)
                      .   +|...+.+++               +..++|++.+.+.....  +++.+.|+++..++++|++++||++.++|.|.
T Consensus       114 a---fG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~  190 (437)
T KOG1303|consen  114 A---FGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSL  190 (437)
T ss_pred             H---hCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHH
Confidence            4   4433333322               45899999998765433  45678999999999999999999999999998


Q ss_pred             HHHHHHH-HHHhheee
Q psy12819        569 VANLLMG-TGLGITFY  583 (675)
Q Consensus       569 ~a~~~i~-~~~~~v~~  583 (675)
                      .+.+..+ ++.+.+..
T Consensus       191 ~~avmS~~~a~~~~~~  206 (437)
T KOG1303|consen  191 VGAVMSTLYAVILIVL  206 (437)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7766554 34444433

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.72  E-value=1.9e-18  Score=187.71  Aligned_cols=325  Identities=13%  Similarity=0.111  Sum_probs=217.1

Q ss_pred             HHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhcCCcccc
Q psy12819         24 LTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGR  103 (675)
Q Consensus        24 ~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~g~~~~~  103 (675)
                      +...+++++|+|++++|.++++.|...+.+.+++.+.++.++...+.|...+.+     +..++.+.+++++        
T Consensus         3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p-----~~~~~~~~~~~~~--------   69 (381)
T TIGR00837         3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP-----GGASFNTIAKDLL--------   69 (381)
T ss_pred             eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHh--------
Confidence            345678999999999999999999999999999999999999999999876542     2479999999998        


Q ss_pred             cchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhhhHHHHH
Q psy12819        104 RYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLL  183 (675)
Q Consensus       104 ~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S~~~~~~  183 (675)
                        ||++++++++...+.++..+++|.+..++.+..+++.+...+.+.+...+++..++.++. .+..+...+++.+.+..
T Consensus        70 --G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~  146 (381)
T TIGR00837        70 --GKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFG  146 (381)
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHH
Confidence              789999999999999999999999999999999988654444455544444444444444 44556777777666665


Q ss_pred             HHHHhheeEEEEccc--CCCCCCCCC-CCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhcCCCCcccc
Q psy12819        184 MGTGLGITFYYIVWD--LHKPMEMPQ-IADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRDHNVQ  260 (675)
Q Consensus       184 ~~~~~~ii~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~~p~~~~~~  260 (675)
                      .+..++........+  .....+... ...+.++..++++..++|++|.+++++.++            +++++||.+| 
T Consensus       147 ~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~------------~~~~~k~i~r-  213 (381)
T TIGR00837       147 KIIAFALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKY------------YDGNVKKVKK-  213 (381)
T ss_pred             HHHHHHHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHH------------hccCHHHHHH-
Confidence            444332222111111  110000000 124556788899999999999999998888            7224445555 


Q ss_pred             cceeEEeEEEEEee---------chhchhH---Hhhc--C----------CCCCchhhHHHHHHHHHHHHHhhhcc--ee
Q psy12819        261 CGHVLYRRTKVTSM---------SFADIGE---VAFA--K----------GPAWGRRYARFARICILLGLFLAYFG--TC  314 (675)
Q Consensus       261 ~~v~~~~~~iv~~l---------GY~~fG~---~~~~--n----------lp~~~~~~~~~~~l~~~l~~~~s~Pl--~p  314 (675)
                        ....+..+++++         |.....+   ..++  |          .-++ .+...++.++..+++..|+.-  .+
T Consensus       214 --aii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~v~~~~~~al~tS~~g~~l~  290 (381)
T TIGR00837       214 --SILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKS-SAIELALELFSNFALASSFLGVTLG  290 (381)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              443433332222         2222111   1111  1          0111 345667777777888888765  33


Q ss_pred             eEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCcc-ccchh-hhHHHHHHhhhhhhhhh
Q psy12819        315 SVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLK-SLAPV-SMVANLLMGTGLGITFY  392 (675)
Q Consensus       315 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~-~v~~~-g~~~~~~l~filP~~fy  392 (675)
                      .  .|.+.+.+++++++..|.              +..+...+++.++|.+.|+.. ..+++ | .+...+.+++|++++
T Consensus       291 ~--~d~l~~~~~~~~~~~~~~--------------~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~  353 (381)
T TIGR00837       291 L--FDYLADLFKFDDSKKGRF--------------KTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLA  353 (381)
T ss_pred             H--HHHHHHHhCCCcccCCCc--------------hhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence            3  566666665533222221              122335788899999999966 77777 6 777789999999999


Q ss_pred             eeecc
Q psy12819        393 YIVYK  397 (675)
Q Consensus       393 ~~~~~  397 (675)
                      +|.||
T Consensus       354 ~~~r~  358 (381)
T TIGR00837       354 WKARK  358 (381)
T ss_pred             HHHHh
Confidence            99775

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>KOG4303|consensus

Probab=99.56  E-value=1.3e-15  Score=152.13  Aligned_cols=162  Identities=16%  Similarity=0.095  Sum_probs=128.0

Q ss_pred             CCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCCCC-----chhHhhHHHHHH
Q psy12819        430 AHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPL-----AESFTRYRNSIH  504 (675)
Q Consensus       430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~-----~~~~~~~~~~~~  504 (675)
                      ..|.+.++|.+|..|++.|.-|++||+|...+||+ |+..++.+|.+|.||.++|++|..+++     ++..++|-.++.
T Consensus       114 ~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~  192 (524)
T KOG4303|consen  114 SEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIAD  192 (524)
T ss_pred             CCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHH
Confidence            34678999999999999999999999999999999 599999999999999999999887776     345566666664


Q ss_pred             HhhhhhccceeeeehHHHHHHHHHHH--------------hhhcCCCCcchhHHHHHHHHHHHhhcCCCCCchhHHHHHH
Q psy12819        505 ALCVRFDLYSRFELSSKISIRISQVI--------------NHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVA  570 (675)
Q Consensus       505 ~~~~~~g~~~~~~~~i~~~~~l~~~~--------------~~~~~~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a  570 (675)
                      .+ ..-+..++..   .+++.+.-++              ..+++.+.+++-|+.+....++|.+|+|+++-++.+|.++
T Consensus       193 ~C-~~P~lGgr~V---~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~c  268 (524)
T KOG4303|consen  193 FC-YKPGLGGRWV---LAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLSFFC  268 (524)
T ss_pred             Hh-cCCCcchhee---eHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHHHHH
Confidence            33 2222222321   1233222221              1244456789999999999999999999999999999999


Q ss_pred             HHHHHHHHhheeeeeecccccccccc
Q psy12819        571 NLLMGTGLGITFYYIVYKVAVVPAKI  596 (675)
Q Consensus       571 ~~~i~~~~~~v~~~~~~~~~~~~~~~  596 (675)
                      .++.++.-++++.||......|.+..
T Consensus       269 t~sH~viN~i~v~YCLs~~~dW~wsk  294 (524)
T KOG4303|consen  269 TISHLVINLIMVLYCLSFVSDWSWSK  294 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccee
Confidence            99999999999999999888887654

>KOG1305|consensus

Probab=99.55  E-value=1e-14  Score=156.85  Aligned_cols=207  Identities=20%  Similarity=0.189  Sum_probs=146.2

Q ss_pred             CCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHHHHhhhh
Q psy12819        430 AHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVR  509 (675)
Q Consensus       430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~  509 (675)
                      ++++|...+++|+.|+++|+||+++|+||++.|++.|+++++++|.++.++.+++.++.++.+.++|.+.++...+..+.
T Consensus         3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~ty~~l~~~~~g~~g~   82 (411)
T KOG1305|consen    3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGERTYSSLGDLIFGKLGK   82 (411)
T ss_pred             CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCCCHHHHHHHHcCCCce
Confidence            45678999999999999999999999999999999999999999999999999998877777666666666655321110


Q ss_pred             --------hccceeeeehHHHHHHHHHHHhhhcCCC------Ccchh-HHHHHHHHHHHhhcCCCCCchhHHHHHHHHHH
Q psy12819        510 --------FDLYSRFELSSKISIRISQVINHYTGTE------LDIRV-YISAFLIPLILLSWVPNLKSLAPVSMVANLLM  574 (675)
Q Consensus       510 --------~g~~~~~~~~i~~~~~l~~~~~~~~~~~------~~~~~-~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i  574 (675)
                              ....+...+.+.++|.+..+.......+      .+++. +++....++.||++.|++++|+++|.++..++
T Consensus        83 ~~~~v~~~~~~~g~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~  162 (411)
T KOG1305|consen   83 VDAAVAVKCFGVGMVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASV  162 (411)
T ss_pred             eeehhhHHhhhccceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence                    0011111122336777775544322211      12333 46777888899999999999999999999999


Q ss_pred             HHHHhheeeeeecccccccccccCcceeeccccCCCC-CcccccccCCCCccchhhhhhhhcccccccccccchhhhccC
Q psy12819        575 GTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDY-WDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAG  653 (675)
Q Consensus       575 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~-~~~~~~~~~~~P~~~~~~~~~~~~~~~g~~~~~~~~~m~~~~  653 (675)
                      ++.++++.++.+.....  ..+.....+     +.+. +..+    -..|.++.+..||..       ..++.+.||||+
T Consensus       163 ~~fv~~vv~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~----~~~pi~~faf~Ch~n-------~~~i~~El~~~s  224 (411)
T KOG1305|consen  163 VYFVVLVVYKYFQGPCA--LGRLSYLVP-----NLSSFSSLF----YALPIFVFAFTCHSN-------VFPIYNELKDRS  224 (411)
T ss_pred             HHHHHHHHHHHHhcccc--cCCcccccC-----Ccchhhhhh----hhhhhhheeeecccc-------ceeeeeeeeCch
Confidence            99999988877664320  111111111     1111 2222    148899999999985       468888999998


Q ss_pred             c
Q psy12819        654 L  654 (675)
Q Consensus       654 ~  654 (675)
                      .
T Consensus       225 ~  225 (411)
T KOG1305|consen  225 V  225 (411)
T ss_pred             H
Confidence            7

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.51  E-value=1.6e-14  Score=154.67  Aligned_cols=360  Identities=16%  Similarity=0.108  Sum_probs=211.9

Q ss_pred             CCCCCCCCCCCCccC-CCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q psy12819          1 METFLPQDGSKTESN-NIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRR   79 (675)
Q Consensus         1 ~~~~~p~~~~~~~~~-~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~   79 (675)
                      |++-|..-.++.+.. =+..+..-.+.+..+++|+|+|+||-.....|.+++++++++++.+++|+...|.|...+.   
T Consensus         1 ~~~~~~~~~~~~~~~~w~~~d~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~---   77 (443)
T PRK13629          1 MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSG---   77 (443)
T ss_pred             CCCchhhhhcccccCCCccccchHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence            444454433322222 2344556668999999999999999999999999999999999999999999999976543   


Q ss_pred             cCCCCCCHHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCC-CccHHHHHHHHH
Q psy12819         80 TKVTSMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGT-ELDIRVYISAFL  158 (675)
Q Consensus        80 ~~~~~~sy~~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~-~~~~~~~~~i~~  158 (675)
                       +++..++.+++++.|          ||.++.+..+..++..|..+.+|...+.+.+++.+.+..+. +.+++...+++.
T Consensus        78 -~~~~~~i~~v~~~~l----------G~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv  146 (443)
T PRK13629         78 -SNPSGNITETVEEHF----------GKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLL  146 (443)
T ss_pred             -CCCCCCHHHHHHHHc----------ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHH
Confidence             134579999999998          78899999999999999999999988888887765554432 345544444444


Q ss_pred             HHHHHhhcccCccccchhhhHHHHHHHHHhheeEEEEccc--CCCCCCC-----CCCCCC---CchhhHhHHHHhhhccc
Q psy12819        159 IPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVWD--LHKPMEM-----PQIADI---STMPTFFSIVIFAIEAI  228 (675)
Q Consensus       159 ~~~~pl~~~~~l~~L~~~S~~~~~~~~~~~~ii~~~~~~~--~~~~~~~-----~~~~~~---~~~~~~~~i~~faf~~h  228 (675)
                      +.+....+..+ +..-+++-+=+...+..++....+...+  .....+.     +...+.   ..+..++|+++|||+.|
T Consensus       147 ~~l~~iv~~G~-~~v~kv~~~Lv~~~i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~  225 (443)
T PRK13629        147 LLMAFVIWFGK-DLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFS  225 (443)
T ss_pred             HHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhcc
Confidence            44444444332 4444444333332332232222222211  1111111     111111   23778999999999999


Q ss_pred             eEeeeeccccccCCCchhhhhhh----cC--CCCcccccceeEEeEEEEEee---------chhc---hhHHhhcCCC--
Q psy12819        229 GVVISFRTATLLSRPVISRELMI----GN--GRDHNVQCGHVLYRRTKVTSM---------SFAD---IGEVAFAKGP--  288 (675)
Q Consensus       229 ~~i~~i~~~~~~~~~~~~~~~M~----~~--p~~~~~~~~v~~~~~~iv~~l---------GY~~---fG~~~~~nlp--  288 (675)
                      +.+|++...        +|+.++    +|  ++|.+|   ++.++..+..++         |-+.   +-+..++|.+  
T Consensus       226 ~iIssl~~y--------~r~~y~~~~~~~~a~~k~~r---ii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~L  294 (443)
T PRK13629        226 PIVSSFVVS--------KREEYEKDFGRDFTERKCSQ---IISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVL  294 (443)
T ss_pred             ccchHHHHH--------HHHHhccccccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHH
Confidence            999998776        222120    12  223333   444433322211         1111   1111111322  


Q ss_pred             --------C--Cc-----hhhHHHHHHHHHHHHHhhhcceeeEEeHHHhhhcC----CCCccccchhhhhccccCccchh
Q psy12819        289 --------A--WG-----RRYARFARICILLGLFLAYFGTCSVYTVIIAKNFS----KSSKISIRISQVINHYTGTELDI  349 (675)
Q Consensus       289 --------~--~~-----~~~~~~~~l~~~l~~~~s~Pl~p~~l~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~  349 (675)
                              +  +.     ........++..+++..||--+-.-++|.+.+...    +.++++...++          .-
T Consensus       295 s~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~~~~~~~~~----------~~  364 (443)
T PRK13629        295 SYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGK----------LN  364 (443)
T ss_pred             HHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCHHH----------HH
Confidence                    1  00     12456666677778888875522222444333221    11111111111          11


Q ss_pred             hH-HHHHHHHHHHHHhhcCCccccch-h-hhHHHHHHhhhhhhhhheeecc
Q psy12819        350 RV-YISAFLIPLILLSWVPNLKSLAP-V-SMVANLLMGTGLGITFYYIVYK  397 (675)
Q Consensus       350 r~-~~~~~~~~~~lA~~vP~~~~v~~-~-g~~~~~~l~filP~~fy~~~~~  397 (675)
                      |. .+..++.++++++.=|++=++++ + |=+.+ .+.|++|...-+|.+.
T Consensus       365 ~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia-~il~l~P~y~i~kvp~  414 (443)
T PRK13629        365 TISMIFIMGSTWVVAYANPNILDLIEAMGAPIIA-SLLCLLPMYAIRKAPS  414 (443)
T ss_pred             HHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHH-HHHHHHHHHHHHccHH
Confidence            22 22357777899999999888886 4 44444 7788999988887665

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.43  E-value=2.7e-13  Score=147.61  Aligned_cols=221  Identities=14%  Similarity=0.141  Sum_probs=153.5

Q ss_pred             CCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHHHHhhhh
Q psy12819        430 AHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVR  509 (675)
Q Consensus       430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~  509 (675)
                      +.+.+..++++++.++.+|+|+|+||+|++..|++++++++++.+.++++|.+++.|+.++.+.+. .++.+.+++.   
T Consensus         6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~-~~~~~~~~~~---   81 (415)
T COG0814           6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGK-ASITSLVEDY---   81 (415)
T ss_pred             cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc-ccHHHHHHHH---
Confidence            445688999999999999999999999999999999999999999999999999988665544331 3444554443   


Q ss_pred             hccceeee---------------ehHHHHHHHHHHHhhhcCCC-CcchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHH
Q psy12819        510 FDLYSRFE---------------LSSKISIRISQVINHYTGTE-LDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLL  573 (675)
Q Consensus       510 ~g~~~~~~---------------~~i~~~~~l~~~~~~~~~~~-~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~  573 (675)
                      +|+.++.+               +.+..++.+++.+++....+ .+++.+.++...++.++++.++...++..|.+....
T Consensus        82 ~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~  161 (415)
T COG0814          82 LGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGK  161 (415)
T ss_pred             hCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence            22222211               12348888998888755444 788888899999999999999999999999999999


Q ss_pred             HHHHHhheeeeeecccccccccccCcceeeccccCCCCCcccccccCCCCccchhhhhhhhcccccccccccchhhhccC
Q psy12819        574 MGTGLGITFYYIVYKVAVVPAKIRDEAVQLNHLDNKDYWDPFKERKLAHPVTDGETLTHLLKASLGTGILSMPYAFRNAG  653 (675)
Q Consensus       574 i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~g~~~~~~~~~m~~~~  653 (675)
                      +.+.++.+.++.... +.......+. ..      +..|.-       .=..+..++|+|.+  .+. +-++.+.||+++
T Consensus       162 v~~~~~l~~~~~~~~-~~~~l~~~~~-~~------~~~~~~-------~~~~ipv~vfsF~~--h~~-i~si~~~~~~~~  223 (415)
T COG0814         162 VIYLVLLVVYLIPHW-NPANLFALPS-AS------QSFWKY-------LLLAIPVFVFSFGF--HGN-IPSLVNYMRKNS  223 (415)
T ss_pred             HHHHHHHHHHHhccc-CHHHHhcccc-cc------hhhHHH-------HHHHhhHHHhhhhC--Ccc-chHHHHHhccch
Confidence            998887777755432 1000000000 00      111110       11455888899988  888 999999999877


Q ss_pred             cccchHHHHHHHHHHhhhcc
Q psy12819        654 LTGGIFLTVLVAVICTHCSY  673 (675)
Q Consensus       654 ~~~~~~~~~~~~~~~~~~~~  673 (675)
                      .= ..--...+|.+...++|
T Consensus       224 ~~-~~~k~~~~~~~~~~vly  242 (415)
T COG0814         224 KK-AVRKAILIGSLIALVLY  242 (415)
T ss_pred             hH-HHHHHHHHHHHHHHHHH
Confidence            63 22333334444443333

>TIGR00814 stp serine transporter

Probab=99.35  E-value=1.4e-12  Score=140.83  Aligned_cols=341  Identities=16%  Similarity=0.126  Sum_probs=210.1

Q ss_pred             ChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhcC
Q psy12819         19 KDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKG   98 (675)
Q Consensus        19 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~g   98 (675)
                      .+..-.+.+..+++|+|+|++|...++.||+..++..++...+++++..++.|.....    +.+..++.|++++.|   
T Consensus         4 ~d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~----~~p~~~i~~~~~~~f---   76 (397)
T TIGR00814         4 TDTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSS----KNPCEDITEVVEEHF---   76 (397)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCCCCHHHHHHHHc---
Confidence            4556778999999999999999999999999888888888889899999998874322    223689999999998   


Q ss_pred             CcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhhh
Q psy12819         99 PAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSM  178 (675)
Q Consensus        99 ~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S~  178 (675)
                             ||++..+..+...+..+..+.+|....++.+.+.+.+....+.+.+....+..+.+.-.......+.+.+++.
T Consensus        77 -------Gk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~  149 (397)
T TIGR00814        77 -------GKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMG  149 (397)
T ss_pred             -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHH
Confidence                   7889999999999999999999999999999988887544344445333333333323333445566666665


Q ss_pred             HHHHHHHHHhheeEEEEcccC--CCCCCCCCC-CCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhcC--
Q psy12819        179 VANLLMGTGLGITFYYIVWDL--HKPMEMPQI-ADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGN--  253 (675)
Q Consensus       179 ~~~~~~~~~~~ii~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~~--  253 (675)
                      +-+...++.++.+..+...+.  ......+.. ..+.++..++++.++||.+|+.+++...+        +||.. ++  
T Consensus       150 il~~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~--------~~~~~-~~~~  220 (397)
T TIGR00814       150 PLVFPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAIS--------YREEY-GDKE  220 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHH--------HHHHc-CCcc
Confidence            555433333333332222111  111111111 12456889999999999999999998744        11112 21  


Q ss_pred             --CCCcccccceeEEeEEEEEee---------chhchhHHhh----cCC---------CCCchhhHHHHHHHHHHHHHhh
Q psy12819        254 --GRDHNVQCGHVLYRRTKVTSM---------SFADIGEVAF----AKG---------PAWGRRYARFARICILLGLFLA  309 (675)
Q Consensus       254 --p~~~~~~~~v~~~~~~iv~~l---------GY~~fG~~~~----~nl---------p~~~~~~~~~~~l~~~l~~~~s  309 (675)
                        ++|.+|   ....+..+..++         +.+. .++.+    +|+         .++ .....+..++-.+++..|
T Consensus       221 ~~~~k~~k---~i~~~~~i~~~~y~~~~~s~~~~l~-~~~~~~a~~~nis~Ls~l~~~~~~-~~i~~~~~~f~~~Ai~tS  295 (397)
T TIGR00814       221 FAERKCLR---IMKGASLILVATVMFFVFSCVLSLS-PAEAVAAKEQNISILSYLANHFNA-AWISYAGPIVAIVAISKS  295 (397)
T ss_pred             hHHHHHHH---HHHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHcCcHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHH
Confidence              223333   333333222211         2221 11211    122         222 356666777777788888


Q ss_pred             hcceeeEEeHHHhhhcC---CCCccccchhhhhccccCccchhh-HHHHHHHHHHHHHhhcCCccccch-h-hhHHHHHH
Q psy12819        310 YFGTCSVYTVIIAKNFS---KSSKISIRISQVINHYTGTELDIR-VYISAFLIPLILLSWVPNLKSLAP-V-SMVANLLM  383 (675)
Q Consensus       310 ~Pl~p~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~lA~~vP~~~~v~~-~-g~~~~~~l  383 (675)
                      |--+-..+.+.+.+.+.   +.+.++...|+.          -| +....++.++.+|+.=|++=++.+ + |=+.+ .+
T Consensus       296 FlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a-~i  364 (397)
T TIGR00814       296 FFGHYLGAREGLNGIVLNSLKMKGKKINIRKL----------NRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIA-MI  364 (397)
T ss_pred             HHHHHHhHHHHHHHHHHHHhcccccccCHHHH----------HHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHH-HH
Confidence            76522222444333221   111111111111          11 222357777899999999888886 4 44444 77


Q ss_pred             hhhhhhhhheeeccc
Q psy12819        384 GTGLGITFYYIVYKV  398 (675)
Q Consensus       384 ~filP~~fy~~~~~~  398 (675)
                      .|++|...-+|.+..
T Consensus       365 ~~~~p~~~~~~v~~l  379 (397)
T TIGR00814       365 LFLMPMYAIYKVPAL  379 (397)
T ss_pred             HHHHHHHHHHccHHH
Confidence            889999888887753

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>KOG3832|consensus

Probab=98.72  E-value=6.2e-08  Score=90.89  Aligned_cols=219  Identities=14%  Similarity=0.217  Sum_probs=130.4

Q ss_pred             CCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhh----------hcCCCCC-
Q psy12819         17 IGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYR----------RTKVTSM-   85 (675)
Q Consensus        17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~----------~~~~~~~-   85 (675)
                      .-|..-....+.|-++|+|.|+||.||+.+||++++.++.+.+++++.+....+++....+.          ++.++.. 
T Consensus        11 lysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~   90 (319)
T KOG3832|consen   11 LYSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDE   90 (319)
T ss_pred             hhhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccc
Confidence            34555566788999999999999999999999999999999999999999999887643220          1001111 


Q ss_pred             ------------CHHHHHHHH------------H------hcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhh
Q psy12819         86 ------------SFADIGEVA------------F------AKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKN  135 (675)
Q Consensus        86 ------------sy~~l~~~~------------~------~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~  135 (675)
                                  .|+.--++-            |      +.|.+....+.|.+-.+..+++++++||-...|--.+--.
T Consensus        91 stasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs  170 (319)
T KOG3832|consen   91 STASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFS  170 (319)
T ss_pred             cccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchH
Confidence                        122111110            0      1111222345677788888999999999999887665544


Q ss_pred             HHHHHHhhcC------------CC----c--------cHHHHHHHHHHHH-HHhhcc--cCccccchhhhHHHHHHHHHh
Q psy12819        136 FSKVINHYTG------------TE----L--------DIRVYISAFLIPL-ILLSWV--PNLKSLAPVSMVANLLMGTGL  188 (675)
Q Consensus       136 l~~l~~~~~~------------~~----~--------~~~~~~~i~~~~~-~pl~~~--~~l~~L~~~S~~~~~~~~~~~  188 (675)
                      .-++.....+            .+    |        ..|++.+|+.+++ +|+.+.  ++-+++.....+.-..-. ..
T Consensus       171 ~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~diqktk~iqiltslmrw~~~-~~  249 (319)
T KOG3832|consen  171 AMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFADIQKTKHIQILTSLMRWAAF-IL  249 (319)
T ss_pred             hhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEeccccchhHHHHHHHHHHHhc-cc
Confidence            4443332111            01    1        2466677765544 577663  344555544444333211 11


Q ss_pred             heeEEEEcccCCC-CCCCCCCCCCCchhhHhHHHHhhhccceEeeeeccc
Q psy12819        189 GITFYYIVWDLHK-PMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTA  237 (675)
Q Consensus       189 ~ii~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~  237 (675)
                      .+.+.- .+...+ ....++....-++-..++..+|+|.||.+.|.....
T Consensus       250 g~~l~t-mqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~ga  298 (319)
T KOG3832|consen  250 GISLAT-MQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGA  298 (319)
T ss_pred             hhhhhh-hhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCC
Confidence            111110 000001 111222234556777888999999999999988776

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=98.45  E-value=5.1e-06  Score=94.57  Aligned_cols=220  Identities=11%  Similarity=0.087  Sum_probs=115.6

Q ss_pred             CCccCCCCChHHHHHHHHHhhhccccchHHHHH--HhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHH
Q psy12819         11 KTESNNIGKDGETLTHLLKASLGTGILSMPYAF--RNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFA   88 (675)
Q Consensus        11 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af--~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~   88 (675)
                      +++.+++.+.++.+..-+.+++|+|+..+|-..  ...|-. .++..++.++.+...+....|.....++    ....|.
T Consensus        23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~----sGg~Y~   97 (557)
T TIGR00906        23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPK----AGSAYL   97 (557)
T ss_pred             ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCccee
Confidence            345677899999999999999999999999643  347754 4445556666666655555555443322    112232


Q ss_pred             HHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcC-----------CCccH-HHHHHH
Q psy12819         89 DIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTG-----------TELDI-RVYISA  156 (675)
Q Consensus        89 ~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~-----------~~~~~-~~~~~i  156 (675)
                      -. ++++          |+...+++.....+.....+.+.....++.+..++....+           ..... .....+
T Consensus        98 y~-~~~~----------G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~  166 (557)
T TIGR00906        98 YS-YVTV----------GELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAV  166 (557)
T ss_pred             eH-HHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHH
Confidence            22 2334          5566666666665544433333333334444444432100           00101 111222


Q ss_pred             HHHHHHHhhcccCccccchhhhHHHHHHHHHhheeEEEEc--ccCCCCC-----CCCCC--CCCCchhhHhHHHHhhhcc
Q psy12819        157 FLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIV--WDLHKPM-----EMPQI--ADISTMPTFFSIVIFAIEA  227 (675)
Q Consensus       157 ~~~~~~pl~~~~~l~~L~~~S~~~~~~~~~~~~ii~~~~~--~~~~~~~-----~~~~~--~~~~~~~~~~~i~~faf~~  227 (675)
                      ..+.++-....+..+..++++.+.....+..+++++....  .+..++.     ....+  ..+.++..+.....|+|.|
T Consensus       167 ~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~G  246 (557)
T TIGR00906       167 CLILLLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIG  246 (557)
T ss_pred             HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhh
Confidence            2222222334456666666665554433332222221111  1111111     00011  1234567778889999999


Q ss_pred             ceEeeeeccccccCCCchhhhhhhcCCCC-ccc
Q psy12819        228 IGVVISFRTATLLSRPVISRELMIGNGRD-HNV  259 (675)
Q Consensus       228 h~~i~~i~~~~~~~~~~~~~~~M~~~p~~-~~~  259 (675)
                      --.+...-.|            + |||+| .++
T Consensus       247 fd~v~~~aeE------------~-knP~r~iP~  266 (557)
T TIGR00906       247 FDAIATTGEE------------V-KNPQRAIPI  266 (557)
T ss_pred             HHHHHHhHHh------------c-cCccccccH
Confidence            9888888888            8 99987 444

>PRK10655 potE putrescine transporter; Provisional

Probab=97.96  E-value=1.9e-05  Score=87.47  Aligned_cols=59  Identities=20%  Similarity=0.280  Sum_probs=45.4

Q ss_pred             cCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12819         14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCG   73 (675)
Q Consensus        14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~   73 (675)
                      ++++.+.++.+...+.+++|+|++.+|..+++.|- .+++..++.+++.......+.|..
T Consensus         4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~   62 (438)
T PRK10655          4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCG   62 (438)
T ss_pred             ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45678999999999999999999999999988886 355566666666665555555543

>TIGR00909 2A0306 amino acid transporter

Probab=97.94  E-value=3.5e-05  Score=85.16  Aligned_cols=214  Identities=13%  Similarity=0.048  Sum_probs=120.8

Q ss_pred             CCCCChHHHHHHHHHhhhccccchHHHHHH-hcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819         15 NNIGKDGETLTHLLKASLGTGILSMPYAFR-NAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV   93 (675)
Q Consensus        15 ~~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~   93 (675)
                      +++.+.++.+...+++++|+|++.+|.... ..|.. +.+..++.+++.......+.|...+.++     ....-+-.++
T Consensus         2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el~~~~p~-----~Gg~y~~~~~   75 (429)
T TIGR00909         2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAMLPV-----AGSPYTYAYE   75 (429)
T ss_pred             CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCcceeeHHH
Confidence            467889999999999999999999997644 44542 4445555666666666666665544322     1222233444


Q ss_pred             HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHH-----------HHHHHHHHHH
Q psy12819         94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRV-----------YISAFLIPLI  162 (675)
Q Consensus        94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~-----------~~~i~~~~~~  162 (675)
                      .+          ||...+++.....+.....+..+....++.+..+++.. +.+.+...           +..+....++
T Consensus        76 ~~----------G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  144 (429)
T TIGR00909        76 AM----------GELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGV-GLDLPAVLTAKPGNGGVFNLPALLIVLFL  144 (429)
T ss_pred             Hh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cccCchhhhcCCcccccccHHHHHHHHHH
Confidence            55          56666666666666655555666666667766666521 11111111           1112222223


Q ss_pred             HhhcccCccccchhhhHHHHHHHHHhheeEEEEcc--cCCCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeecccccc
Q psy12819        163 LLSWVPNLKSLAPVSMVANLLMGTGLGITFYYIVW--DLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLL  240 (675)
Q Consensus       163 pl~~~~~l~~L~~~S~~~~~~~~~~~~ii~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~  240 (675)
                      -....+..+...+++.+.....+..+++++.....  +.++.++..+ .++.++..++....|+|.+.-.....-.|   
T Consensus       145 ~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~af~G~e~~~~~~~E---  220 (429)
T TIGR00909       145 TYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMP-MGFGGVGAATALVFFAFIGFEAISTAAEE---  220 (429)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCC-CcHHHHHHHHHHHHHHHhhHHHHHhhHHh---
Confidence            33344556666666665555443333221111111  1111111111 23445677788899999999888888888   


Q ss_pred             CCCchhhhhhhcCCCC-ccc
Q psy12819        241 SRPVISRELMIGNGRD-HNV  259 (675)
Q Consensus       241 ~~~~~~~~~M~~~p~~-~~~  259 (675)
                               + |||+| .+|
T Consensus       221 ---------~-~~p~r~ip~  230 (429)
T TIGR00909       221 ---------V-KNPERDIPK  230 (429)
T ss_pred             ---------c-cCccccccH
Confidence                     8 89865 455

>TIGR00837 araaP aromatic amino acid transport protein

Probab=97.90  E-value=1.9e-05  Score=85.79  Aligned_cols=144  Identities=17%  Similarity=0.186  Sum_probs=88.4

Q ss_pred             HHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhcc-CCCCchhHhhHHHHHHHhh-hhhccceee
Q psy12819        439 LTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRN-TDPLAESFTRYRNSIHALC-VRFDLYSRF  516 (675)
Q Consensus       439 ~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~-~~~~~~~~~~~~~~~~~~~-~~~g~~~~~  516 (675)
                      .....++.+|+|++++|.+++..|...+.+.+++.++++.++..++.+.. +.|+..++.+|.+...+-. +....+...
T Consensus         3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~   82 (381)
T TIGR00837         3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL   82 (381)
T ss_pred             eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence            34467899999999999999999999999999999999999999887643 4455567777777763211 101001110


Q ss_pred             ee--------hHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHhheee
Q psy12819        517 EL--------SSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLGITFY  583 (675)
Q Consensus       517 ~~--------~i~~~~~l~~~~~~~~~~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~~~~~v~~  583 (675)
                      ..        .+..++.+.+++++....+.+.....++..+++.++.+ +..+..++++.+.....+..++.+..
T Consensus        83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~-~G~~~~~~v~~i~~~~~l~~l~~~ii  156 (381)
T TIGR00837        83 FVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVW-LSTSAVDRITRVLIFGKIIAFALVFS  156 (381)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            00        01134666666654333333444444444444445444 56678888777766665555444433

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=97.90  E-value=9.1e-05  Score=80.07  Aligned_cols=72  Identities=17%  Similarity=0.256  Sum_probs=59.3

Q ss_pred             CCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHhhHHHH
Q psy12819        431 HPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTD-PLAESFTRYRNS  502 (675)
Q Consensus       431 ~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~-~~~~~~~~~~~~  502 (675)
                      +|.+..++..-+.-+.||+|+|+||.+-+..|+.+++++++++.++.+||..++.|.+.+ +...++.++.|.
T Consensus         7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~   79 (415)
T PRK09664          7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKD   79 (415)
T ss_pred             hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            344778899999999999999999999999999999999999999999999999875443 333344444433

>PRK10483 tryptophan permease; Provisional

Probab=97.77  E-value=0.00027  Score=76.50  Aligned_cols=72  Identities=13%  Similarity=0.139  Sum_probs=60.3

Q ss_pred             CCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCC-CCchhHhhHHHH
Q psy12819        431 HPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTD-PLAESFTRYRNS  502 (675)
Q Consensus       431 ~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~-~~~~~~~~~~~~  502 (675)
                      ++.+.+++.+-+.-+.||+|+|+||.+-++.|.++++++++++..+.+|+..+++|.+.+ +...++.++.|.
T Consensus         9 ~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~   81 (414)
T PRK10483          9 TSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKD   81 (414)
T ss_pred             CCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999885444 333344444443

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=97.74  E-value=0.0002  Score=77.74  Aligned_cols=57  Identities=16%  Similarity=0.214  Sum_probs=52.5

Q ss_pred             ChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy12819        434 TDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRNTD  490 (675)
Q Consensus       434 s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~  490 (675)
                      +..++.+.+.-+.+|+|+|+||.+....|.+++++++++++.+.+|+.+++.|.+.+
T Consensus         4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~   60 (403)
T PRK15132          4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQH   60 (403)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            678899999999999999999999999999999999999999999999999885444

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.70  E-value=0.00022  Score=77.54  Aligned_cols=56  Identities=16%  Similarity=0.230  Sum_probs=52.2

Q ss_pred             CChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12819        433 VTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRN  488 (675)
Q Consensus       433 ~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~  488 (675)
                      .+.+++.+.+.-+.+|+|+|+||.+.+..|.+++.+.++++..+.+|+..++.|..
T Consensus         3 ~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~   58 (394)
T PF03222_consen    3 NSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVS   58 (394)
T ss_pred             chHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999999999999999999999999999999999987744

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=97.66  E-value=6.2e-05  Score=81.14  Aligned_cols=208  Identities=11%  Similarity=0.119  Sum_probs=116.1

Q ss_pred             CCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHh
Q psy12819         17 IGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFA   96 (675)
Q Consensus        17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~   96 (675)
                      +.|..|.++.+..+++|+|++.+|...++.+---+.+..++.++.+.....++.+...+.      +..+.-|..++++ 
T Consensus         2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~------p~~~~~~~~~~~~-   74 (359)
T TIGR00912         2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF------PEKNFSEILSKYL-   74 (359)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHh-
Confidence            567889999999999999999999987664333355566677777777777777765543      2347889999998 


Q ss_pred             cCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchh
Q psy12819         97 KGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPV  176 (675)
Q Consensus        97 ~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~  176 (675)
                               ||+...++......+....+.......+|.++...    -.+.+. ....+..+...-....+.++..+.+
T Consensus        75 ---------Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~tp~-~~~~l~~l~~~~~~~~~Gi~~i~r~  140 (359)
T TIGR00912        75 ---------GKILGRLLSILFILYFFLIAAYLIRIFADFIKTYL----LPRTPI-IVIIILIIIVSIYIVRKGIEVLLRT  140 (359)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCH-HHHHHHHHHHHHHHHHccHHHHHHH
Confidence                     66667777766665555444333333333333221    112222 2222222222333344567777776


Q ss_pred             hhHHHHHHHHHh-heeEEEEcccCCCCCCCCC-C-CCCCchhhHh-HHHHhhhccceEeeeeccccccCCCchhhhhhhc
Q psy12819        177 SMVANLLMGTGL-GITFYYIVWDLHKPMEMPQ-I-ADISTMPTFF-SIVIFAIEAIGVVISFRTATLLSRPVISRELMIG  252 (675)
Q Consensus       177 S~~~~~~~~~~~-~ii~~~~~~~~~~~~~~~~-~-~~~~~~~~~~-~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~  252 (675)
                      +.+-....+... +++......+ .+.+...+ + .++.+..... +...++|.+.........+            + +
T Consensus       141 ~~i~~~~~i~~~~~il~~~~~~~-~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~------------~-~  206 (359)
T TIGR00912       141 AEILLIIFLILFILVLILLAPKL-GNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPL------------L-S  206 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc-ccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHH------------h-C
Confidence            666554443331 2221111111 11111111 1 2333333333 3667888766655555555            6 7


Q ss_pred             CCCCccc
Q psy12819        253 NGRDHNV  259 (675)
Q Consensus       253 ~p~~~~~  259 (675)
                      +|++.+|
T Consensus       207 ~~~~~~k  213 (359)
T TIGR00912       207 KKKKIKK  213 (359)
T ss_pred             ChhhhHH
Confidence            7777776

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=97.61  E-value=0.00028  Score=78.63  Aligned_cols=214  Identities=13%  Similarity=0.061  Sum_probs=117.4

Q ss_pred             CCccCCCCChHHHHHHHHHhhhccccchHH-HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHH
Q psy12819         11 KTESNNIGKDGETLTHLLKASLGTGILSMP-YAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFAD   89 (675)
Q Consensus        11 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP-~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~   89 (675)
                      .++.+++.+..+..+..+.+++|+|++.+| .+.+++|-. +++..++.+++....+..+.|.....+     +..+.-+
T Consensus         7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P-----~~Gg~~~   80 (452)
T TIGR01773         7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANP-----DTGSFST   80 (452)
T ss_pred             hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCHHH
Confidence            466788999999999999999999999999 678888853 566666666666655555555443322     2345566


Q ss_pred             HHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccC
Q psy12819         90 IGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPN  169 (675)
Q Consensus        90 l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~  169 (675)
                      .+++.+          ||...+++.....+.....+.+.....++.++...+     +.+...+.++...+ .-......
T Consensus        81 ~~~~~~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~-~~~~n~~g  144 (452)
T TIGR01773        81 YADDAI----------GRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFP-----DIPLWLFSLILTIV-LTLTNLYS  144 (452)
T ss_pred             HHHHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----cCcHHHHHHHHHHH-HHHHHHHh
Confidence            677776          555666666655554444444433344444443322     22222222222222 22223334


Q ss_pred             ccccchhhhHHHHHHHH---HhheeEE-EEcccCCC-----CCCC---C-C-CCCCCchhhHhHHHHhhhccceEeeeec
Q psy12819        170 LKSLAPVSMVANLLMGT---GLGITFY-YIVWDLHK-----PMEM---P-Q-IADISTMPTFFSIVIFAIEAIGVVISFR  235 (675)
Q Consensus       170 l~~L~~~S~~~~~~~~~---~~~ii~~-~~~~~~~~-----~~~~---~-~-~~~~~~~~~~~~i~~faf~~h~~i~~i~  235 (675)
                      .+..+.+.....+..+.   .++++.. ......++     .++.   . . ...+.++..++....|+|.|--.+...-
T Consensus       145 v~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a  224 (452)
T TIGR01773       145 VKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAA  224 (452)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHH
Confidence            44444444332222111   1111100 00011110     0110   0 0 1122347778888999999999999988


Q ss_pred             cccccCCCchhhhhhhcCCCC-ccc
Q psy12819        236 TATLLSRPVISRELMIGNGRD-HNV  259 (675)
Q Consensus       236 ~~~~~~~~~~~~~~M~~~p~~-~~~  259 (675)
                      .|            + |||+| .+|
T Consensus       225 ~E------------~-k~P~r~iPr  236 (452)
T TIGR01773       225 AE------------S-SNPIKSITR  236 (452)
T ss_pred             Hh------------h-cChhhHHHH
Confidence            88            8 99976 455

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10746 putative transport protein YifK; Provisional

Probab=97.48  E-value=0.00077  Score=75.20  Aligned_cols=212  Identities=10%  Similarity=0.044  Sum_probs=109.6

Q ss_pred             ccCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819         13 ESNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG   91 (675)
Q Consensus        13 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~   91 (675)
                      +.+++.+.++..+.-+.++||+|++..|.. .+.+|- ..++..++.+++.+..+.-+.|.....     ++..++.+-+
T Consensus         7 ~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~-----P~sGg~~~y~   80 (461)
T PRK10746          7 ELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLE-----PVTGSFAVYA   80 (461)
T ss_pred             HHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCCCHHHHH
Confidence            366779999999999999999999998875 666775 344555666666666666665544433     2245677777


Q ss_pred             HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcc
Q psy12819         92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLK  171 (675)
Q Consensus        92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~  171 (675)
                      ++.+          |+....++.....+.....+.+.....+..++...    + +.....+..+...++.-+ ..+..+
T Consensus        81 ~~~~----------g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~----p-~~~~~~~~~~~~~~~~~l-N~~gv~  144 (461)
T PRK10746         81 HRYM----------SPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWF----P-EMAQWIPALIAVALVALA-NLAAVR  144 (461)
T ss_pred             HHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----C-CCchHHHHHHHHHHHHHH-HHHhHH
Confidence            7777          44444555554444433333332223333333222    1 233333333322222222 222333


Q ss_pred             ccchhhh----HHHHHHHH----HhheeEEEEcccCC--CCCCCC----C-CCCCCchhhHhHHHHhhhccceEeeeecc
Q psy12819        172 SLAPVSM----VANLLMGT----GLGITFYYIVWDLH--KPMEMP----Q-IADISTMPTFFSIVIFAIEAIGVVISFRT  236 (675)
Q Consensus       172 ~L~~~S~----~~~~~~~~----~~~ii~~~~~~~~~--~~~~~~----~-~~~~~~~~~~~~i~~faf~~h~~i~~i~~  236 (675)
                      ..+.+..    +-+..++.    ++.+.......+.+  +.++..    . ...+.++..++....|+|.+--.+...-.
T Consensus       145 ~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~  224 (461)
T PRK10746        145 LYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAG  224 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3333221    11111111    11111111000100  011110    1 11244567888999999999888888888


Q ss_pred             ccccCCCchhhhhhhcCCCCc-cc
Q psy12819        237 ATLLSRPVISRELMIGNGRDH-NV  259 (675)
Q Consensus       237 ~~~~~~~~~~~~~M~~~p~~~-~~  259 (675)
                      |            + |||+|- +|
T Consensus       225 E------------~-knP~k~iP~  235 (461)
T PRK10746        225 E------------A-KNPQVTLRS  235 (461)
T ss_pred             H------------h-cChhhHHHH
Confidence            8            8 898754 44

>TIGR00908 2A0305 ethanolamine permease

Probab=97.44  E-value=0.00036  Score=77.45  Aligned_cols=214  Identities=10%  Similarity=0.038  Sum_probs=112.5

Q ss_pred             CccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819         12 TESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG   91 (675)
Q Consensus        12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~   91 (675)
                      ++.+++.+.++.+..-+..++|....+.+.+.++.|+..-+...++.+++....+..+.|.....++     ....-.-+
T Consensus         3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-----~Gg~y~~~   77 (442)
T TIGR00908         3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-----AGGGYGFA   77 (442)
T ss_pred             chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHHH
Confidence            3456778899998888888998555666888899998644444455555544445555554443321     23344455


Q ss_pred             HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcc
Q psy12819         92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLK  171 (675)
Q Consensus        92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~  171 (675)
                      ++.+          ||...+++.....+.......++....++.+..+++.     .......++...+. -+...+..+
T Consensus        78 ~~~~----------G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-----~~~~~~~~~~~~~~-~~ln~~g~~  141 (442)
T TIGR00908        78 RRAF----------GPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-----GPGWLAALVFYIVF-IGINILGVG  141 (442)
T ss_pred             HHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CchhHHHHHHHHHH-HHHHHHHHH
Confidence            5566          5666666666665555544555555566666555432     12222222221111 122333444


Q ss_pred             ccchhhhHHHHHHHHHhheeEEEEcccC------CC-CCCCCCC--CCCCchhhHhHHHHhhhccceEeeeeccccccCC
Q psy12819        172 SLAPVSMVANLLMGTGLGITFYYIVWDL------HK-PMEMPQI--ADISTMPTFFSIVIFAIEAIGVVISFRTATLLSR  242 (675)
Q Consensus       172 ~L~~~S~~~~~~~~~~~~ii~~~~~~~~------~~-~~~~~~~--~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~  242 (675)
                      ..+++..+..+..++.+++.......+.      ++ .++...+  ..+.++..++....|+|.|.-.+...-+|     
T Consensus       142 ~~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE-----  216 (442)
T TIGR00908       142 EAAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEE-----  216 (442)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            4444444333222222111110000000      00 0001111  11224566777788999999888888888     


Q ss_pred             CchhhhhhhcCCCC-ccc
Q psy12819        243 PVISRELMIGNGRD-HNV  259 (675)
Q Consensus       243 ~~~~~~~M~~~p~~-~~~  259 (675)
                             + |||+| .+|
T Consensus       217 -------~-k~P~r~ipr  226 (442)
T TIGR00908       217 -------T-KNPKRDIPR  226 (442)
T ss_pred             -------h-cCcccccCH
Confidence                   8 99976 455

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>KOG1287|consensus

Probab=97.33  E-value=0.00014  Score=79.07  Aligned_cols=342  Identities=15%  Similarity=0.131  Sum_probs=170.6

Q ss_pred             CCccCCCCChHHHHHHHHHhhhccccchHHHHHHhcC--hhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHH
Q psy12819         11 KTESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAG--LTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFA   88 (675)
Q Consensus        11 ~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G--~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~   88 (675)
                      ..+.+++.+.+.++..++.+++|+|+..-|....+.+  ...++++-+++|+++...+....|-.-..    ++...+|.
T Consensus         7 ~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~i----pksGgd~a   82 (479)
T KOG1287|consen    7 EVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSI----PKSGGDYA   82 (479)
T ss_pred             cccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccc----cCCCcchh
Confidence            4556788999999999999999999999999865544  55566677778888888877776644322    22234565


Q ss_pred             HHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhh-HHHHHHhhcCCCccHHHHHHHHHHHHHHhhcc
Q psy12819         89 DIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKN-FSKVINHYTGTELDIRVYISAFLIPLILLSWV  167 (675)
Q Consensus        89 ~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~-l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~  167 (675)
                      -+.+ +|  |+-       ++-....+......-..+..+-+..++. +++.++. +  +.++...-.+..+++..+ ..
T Consensus        83 yi~~-af--g~~-------~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~-c--~~p~~~~~lla~~~l~~l-t~  148 (479)
T KOG1287|consen   83 YISE-AF--GPF-------PAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL-C--DVPRVASKLLAAALLVLL-TL  148 (479)
T ss_pred             hHHH-Hh--ccc-------hhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC-C--CCchHHHHHHHHHHHHHH-HH
Confidence            5554 34  221       2222222222222222223444444444 4555442 1  222222222222222222 33


Q ss_pred             cCccccchhhhHHHHHH---HHHhhee----EEEEcccCCC-CCCC---CCCCCCCchhhHhHHHHhhhccceEeeeecc
Q psy12819        168 PNLKSLAPVSMVANLLM---GTGLGIT----FYYIVWDLHK-PMEM---PQIADISTMPTFFSIVIFAIEAIGVVISFRT  236 (675)
Q Consensus       168 ~~l~~L~~~S~~~~~~~---~~~~~ii----~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~  236 (675)
                      .+...+++.+.+-.+++   +.++..+    .+...++..+ .++.   ..-.+..++..++=.-.|||.+=..+=-+..
T Consensus       149 ~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vte  228 (479)
T KOG1287|consen  149 INSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTE  228 (479)
T ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchH
Confidence            34555555544433322   2222221    1222222111 1111   0112344577888888999999888878888


Q ss_pred             ccccCCCchhhhhhhcCCCCc-ccccceeEEeEEEEEee------chhc---hhHHhhc----------CCCCCchhhHH
Q psy12819        237 ATLLSRPVISRELMIGNGRDH-NVQCGHVLYRRTKVTSM------SFAD---IGEVAFA----------KGPAWGRRYAR  296 (675)
Q Consensus       237 ~~~~~~~~~~~~~M~~~p~~~-~~~~~v~~~~~~iv~~l------GY~~---fG~~~~~----------nlp~~~~~~~~  296 (675)
                      |            + |||+|- ++   .+..++.++++.      .|.+   ..|-..+          .++.    +..
T Consensus       229 E------------i-knP~ktLP~---Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~----~~~  288 (479)
T KOG1287|consen  229 E------------I-KNPRRTLPR---AILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGV----FAW  288 (479)
T ss_pred             h------------h-cCccccchH---HHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccc----hHH
Confidence            8            8 999875 44   444555444433      2221   1111111          1111    113


Q ss_pred             HHHHHHHHHHHhhhcc--eeeEEeHHHhhhcCCCCccccchhhhhccccCccchhhHHHHHHHHHHHHHhhcCCccccch
Q psy12819        297 FARICILLGLFLAYFG--TCSVYTVIIAKNFSKSSKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAP  374 (675)
Q Consensus       297 ~~~l~~~l~~~~s~Pl--~p~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~lA~~vP~~~~v~~  374 (675)
                      ...++.+++.+-+.--  +..  -+.++. -.++.+...-... ++   .++.--|..+.+-.+..++..+++|++.+++
T Consensus       289 ~ip~~ValS~~G~~n~~ifs~--SR~~~~-~areG~LP~~~s~-i~---~~~~TP~~allf~~~~~i~~~~~~d~~~LIn  361 (479)
T KOG1287|consen  289 AIPFSVALSLIGSLNSVIFSS--SRLFYA-GAREGHLPAFFSM-IS---VRRFTPRPALLFSGLLSIVLSLIGDFDQLIN  361 (479)
T ss_pred             HHHHHHHHHhhhhhhhHHHHH--HHHHHH-HHHccCccHHHHh-hc---CCCCCChHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            3333333333333221  111  011110 0011110000000 00   0000112333344555667777889999999


Q ss_pred             h-hhHHHHHHhhhhhhhhheeecc
Q psy12819        375 V-SMVANLLMGTGLGITFYYIVYK  397 (675)
Q Consensus       375 ~-g~~~~~~l~filP~~fy~~~~~  397 (675)
                      + +...+....+.+-+++|+|.++
T Consensus       362 y~sf~~~l~~~l~~~gll~lR~k~  385 (479)
T KOG1287|consen  362 YVSFAYWLFRGLSMAGLLWLRWKH  385 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9 9999999999999999999776

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.28  E-value=0.0033  Score=70.59  Aligned_cols=211  Identities=15%  Similarity=0.078  Sum_probs=109.0

Q ss_pred             CCCChHHHHHHHHHhhhccccchHHH-HHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHH
Q psy12819         16 NIGKDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVA   94 (675)
Q Consensus        16 ~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~   94 (675)
                      ++.+.++.....+..++|+|++..|. +.+++|-...++..++.+++......-+.|.....++    ....|.+.+++.
T Consensus         2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~----~gG~~~~~~~~~   77 (478)
T TIGR00913         2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPV----VSGSFATYASRF   77 (478)
T ss_pred             CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCCHHHHHHHH
Confidence            56788888999999999999998775 5667774333455666666666666666555443321    234677777777


Q ss_pred             HhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccc
Q psy12819         95 FAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLA  174 (675)
Q Consensus        95 ~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~  174 (675)
                      +          |+...+++.....+.....+.+.....+..+...    .+ +.....+..+...+ .-+...+..+..+
T Consensus        78 ~----------g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~-~~~in~~gv~~~~  141 (478)
T TIGR00913        78 V----------DPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYW----TD-KVNPAVWIAIFYVF-IVIINLFGVKGYG  141 (478)
T ss_pred             c----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHH-HHHHHHhcchHHH
Confidence            7          4555555555554444333333333333333321    11 22333333322222 2222344455544


Q ss_pred             hhhhHHHHHH---HHHhheeE-EEEcccCCCC--------CCCCCCC------CCCchhhHhHHHHhhhccceEeeeecc
Q psy12819        175 PVSMVANLLM---GTGLGITF-YYIVWDLHKP--------MEMPQIA------DISTMPTFFSIVIFAIEAIGVVISFRT  236 (675)
Q Consensus       175 ~~S~~~~~~~---~~~~~ii~-~~~~~~~~~~--------~~~~~~~------~~~~~~~~~~i~~faf~~h~~i~~i~~  236 (675)
                      .+........   +..++++. .....+.+..        .+...+.      .+.++..++....|+|.|--.....-+
T Consensus       142 ~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~  221 (478)
T TIGR00913       142 EAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAG  221 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence            4443332111   11111110 0000111100        0001111      134466777778999999888888888


Q ss_pred             ccccCCCchhhhhhhcCCCC-ccc
Q psy12819        237 ATLLSRPVISRELMIGNGRD-HNV  259 (675)
Q Consensus       237 ~~~~~~~~~~~~~M~~~p~~-~~~  259 (675)
                      |            + |||+| .+|
T Consensus       222 E------------~-knP~r~iPr  232 (478)
T TIGR00913       222 E------------A-ANPRKSIPR  232 (478)
T ss_pred             h------------h-cChhhHHHH
Confidence            8            8 99976 444

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.18  E-value=0.00078  Score=74.63  Aligned_cols=62  Identities=15%  Similarity=0.063  Sum_probs=43.4

Q ss_pred             ccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q psy12819         13 ESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRR   79 (675)
Q Consensus        13 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~   79 (675)
                      +++++.+.++.+...+.+++|+|++.+|...++.|-. .+...++.++.+.    .+..|..|+..+
T Consensus         2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l----~~al~~aEL~s~   63 (435)
T PRK10435          2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAM----SLAYVYARLATK   63 (435)
T ss_pred             CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHH----HHHHHHHHHHhh
Confidence            3567899999999999999999999999999987753 3444444444444    344444444433

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.16  E-value=0.00083  Score=75.17  Aligned_cols=220  Identities=14%  Similarity=0.080  Sum_probs=114.5

Q ss_pred             CCCCCCCCccCCCCChHHHHHHHHHhhhccccchHHH-HHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCC
Q psy12819          5 LPQDGSKTESNNIGKDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVT   83 (675)
Q Consensus         5 ~p~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~   83 (675)
                      |+|+...++.+++.+.++.....+.++||+|++..|. +.+++|. ..+...++.+++......-+.|    +... ...
T Consensus         9 ~~~~~~~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aE----l~s~-~~~   82 (469)
T PRK11049          9 DDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGE----LLLS-NLE   82 (469)
T ss_pred             hhccccchhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHH----HHHh-cCC
Confidence            3444434557788999999999999999999999876 6788886 3455555666655555544443    3221 112


Q ss_pred             CCCHHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q psy12819         84 SMSFADIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLIL  163 (675)
Q Consensus        84 ~~sy~~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~p  163 (675)
                      ..++.+.+++.+          ||...+++.....+...-...+.....+..++...+     +.....+.++...++. 
T Consensus        83 ~~~~~~ya~~~~----------g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p-----~~~~~~~~~~~~~~~~-  146 (469)
T PRK11049         83 YKSFSDFASDLL----------GPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFP-----DLSDWVASLAVVLLLL-  146 (469)
T ss_pred             CCcHHHHHHHHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCcHHHHHHHHHHHHH-
Confidence            235566777777          556666666665544432222222223333332222     1223222222222222 


Q ss_pred             hhcccCccccchhhhHHHHHHH---HHhheeEEEEc-c--cCCC-----CCCC----CC-CCCCCchhhHhHHHHhhhcc
Q psy12819        164 LSWVPNLKSLAPVSMVANLLMG---TGLGITFYYIV-W--DLHK-----PMEM----PQ-IADISTMPTFFSIVIFAIEA  227 (675)
Q Consensus       164 l~~~~~l~~L~~~S~~~~~~~~---~~~~ii~~~~~-~--~~~~-----~~~~----~~-~~~~~~~~~~~~i~~faf~~  227 (675)
                      +......+..+.+..+.....+   +.+++...... .  +.++     .++.    .. ...+.++..++....|+|.|
T Consensus       147 ~iN~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G  226 (469)
T PRK11049        147 SLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVG  226 (469)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhc
Confidence            2223334444444433222211   11111100000 0  0010     1110    01 11234577888899999999


Q ss_pred             ceEeeeeccccccCCCchhhhhhhcCCCC-ccc
Q psy12819        228 IGVVISFRTATLLSRPVISRELMIGNGRD-HNV  259 (675)
Q Consensus       228 h~~i~~i~~~~~~~~~~~~~~~M~~~p~~-~~~  259 (675)
                      --.+...-+|            + |||+| .+|
T Consensus       227 ~e~~~~~a~E------------~-knP~r~iPr  246 (469)
T PRK11049        227 IELVGTTAAE------------T-KDPEKSLPR  246 (469)
T ss_pred             HHHHHHHHHH------------h-cCHhhHHHH
Confidence            9999888888            8 99987 455

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.13  E-value=0.0011  Score=73.73  Aligned_cols=61  Identities=10%  Similarity=0.100  Sum_probs=42.3

Q ss_pred             CccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12819         12 TESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCG   73 (675)
Q Consensus        12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~   73 (675)
                      .+.+++.+.++.+...+++++|+|++.+|...++.|-. .+...++.++........+.|..
T Consensus         4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~   64 (445)
T PRK10644          4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMS   64 (445)
T ss_pred             CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            44667899999999999999999999999998887632 33344444444444444444433

>PRK11021 putative transporter; Provisional

Probab=97.13  E-value=0.002  Score=70.85  Aligned_cols=208  Identities=13%  Similarity=0.048  Sum_probs=103.7

Q ss_pred             ChHHHHHHHHHhhhccccchHHHHHHh-cChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhc
Q psy12819         19 KDGETLTHLLKASLGTGILSMPYAFRN-AGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAK   97 (675)
Q Consensus        19 s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~   97 (675)
                      +.++++...+++++|+|++.+|-...+ +|- ..++..++.++........+.|...++++     ....-.-+++.+  
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~-----aGG~y~y~~~~~--   73 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPH-----AGGPAHFVGMAF--   73 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHhHHHHh--
Confidence            567888999999999999999986544 453 45566666666666666666665554432     234444556666  


Q ss_pred             CCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhh
Q psy12819         98 GPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVS  177 (675)
Q Consensus        98 g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S  177 (675)
                              ||...+.+.............+......+.+..+++.   .+.. .....+....++-+...+..+..+++.
T Consensus        74 --------G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~ln~~Gv~~~~~~~  141 (410)
T PRK11021         74 --------GPRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW---SSWQ-LLLAELLTLALLWLLNLRGASSSANLQ  141 (410)
T ss_pred             --------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---CCch-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence                    3333444443333211111111111122233333221   1111 122211122222223344445555444


Q ss_pred             hHHHHHHHHHhheeEEEEcccCCCCCCC-CCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhcCCCC
Q psy12819        178 MVANLLMGTGLGITFYYIVWDLHKPMEM-PQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIGNGRD  256 (675)
Q Consensus       178 ~~~~~~~~~~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~~p~~  256 (675)
                      .+..+..+..+.........+..+.+.. ....++.++..++....|+|.+.-.+...-+|            + |||+|
T Consensus       142 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E------------~-k~P~k  208 (410)
T PRK11021        142 TVIALLIVALVVAIWWAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASE------------F-KNPER  208 (410)
T ss_pred             HHHHHHHHHHHHHHHHHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHh------------c-cCccc
Confidence            4333222211111111000011111000 01124456778888999999999999999999            8 99976


Q ss_pred             -ccc
Q psy12819        257 -HNV  259 (675)
Q Consensus       257 -~~~  259 (675)
                       .+|
T Consensus       209 ~iPr  212 (410)
T PRK11021        209 DFPR  212 (410)
T ss_pred             cccH
Confidence             455

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.09  E-value=0.0013  Score=73.64  Aligned_cols=218  Identities=10%  Similarity=0.072  Sum_probs=108.7

Q ss_pred             cCCCCChHHHHHHHHHhhhccccchHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819         14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNAG-LTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE   92 (675)
Q Consensus        14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G-~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~   92 (675)
                      .+++.+.++.++..+++++|+|++.+|....+.| -...++..++.++........+.|.....+++    ....-+-++
T Consensus         5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~----sGG~y~y~~   80 (473)
T TIGR00905         5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL----DGGIYAYAR   80 (473)
T ss_pred             cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CCChhhhHH
Confidence            4677999999999999999999999999977644 22233445555555555555555544433220    122333445


Q ss_pred             HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHH-HHHHHHHHHhhcccCcc
Q psy12819         93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYI-SAFLIPLILLSWVPNLK  171 (675)
Q Consensus        93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~  171 (675)
                      +.+          ||...+++.............++.....+.+..+++... .+.....+. .+....+.-....+..+
T Consensus        81 ~~~----------G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~-~~~~~~~~~~~~~~~~~~~~ln~~Gi~  149 (473)
T TIGR00905        81 EGF----------GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG-SGNPVPSILGASVLLWVFTFLVLRGVR  149 (473)
T ss_pred             hHc----------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCcHHHHHHHHHHHHHHHHHHHhCHH
Confidence            566          455555555544333322233333333444444444211 111111111 11122222233444555


Q ss_pred             ccchhhhHHHHHHHHHh---heeEEEEcccC--C-CCCC--CCC-CCCCCchhhHhHHHHhhhccceEeeeeccccccCC
Q psy12819        172 SLAPVSMVANLLMGTGL---GITFYYIVWDL--H-KPME--MPQ-IADISTMPTFFSIVIFAIEAIGVVISFRTATLLSR  242 (675)
Q Consensus       172 ~L~~~S~~~~~~~~~~~---~ii~~~~~~~~--~-~~~~--~~~-~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~  242 (675)
                      ..+.+..+.....+..+   ++......+..  . +...  .+. ...+..+..++....|+|.|--.....-+|     
T Consensus       150 ~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E-----  224 (473)
T TIGR00905       150 QAAFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGR-----  224 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHH-----
Confidence            55555554443322111   11111001110  0 0000  000 012334566777789999998888888888     


Q ss_pred             CchhhhhhhcCCCCccc
Q psy12819        243 PVISRELMIGNGRDHNV  259 (675)
Q Consensus       243 ~~~~~~~M~~~p~~~~~  259 (675)
                             + ||+++.+|
T Consensus       225 -------~-k~~r~iPr  233 (473)
T TIGR00905       225 -------A-KNKSDVGK  233 (473)
T ss_pred             -------H-hccccchH
Confidence                   8 67555555

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.08  E-value=0.00099  Score=74.53  Aligned_cols=59  Identities=15%  Similarity=0.171  Sum_probs=40.1

Q ss_pred             CCCChHHHHHHHHHhhhccccchHHHHHH-hcChhhHHHHHHHHHHHHHHHHHHHHHhhH
Q psy12819         16 NIGKDGETLTHLLKASLGTGILSMPYAFR-NAGLTGGIFLTVLVAVICTHCSYILVQCGH   74 (675)
Q Consensus        16 ~~~s~~~a~~~l~~~~iG~GiL~LP~af~-~~G~~~g~illi~~~~~~~~t~~lL~~~~~   74 (675)
                      ++.+.++.+...+.++||+|++.+|.... .+|....++..++.++........+.|...
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s   60 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLAN   60 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45678899999999999999999998755 445332344455566655555554544433

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=97.07  E-value=0.0038  Score=67.87  Aligned_cols=50  Identities=24%  Similarity=0.314  Sum_probs=46.0

Q ss_pred             HHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12819        439 LTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWRN  488 (675)
Q Consensus       439 ~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~~  488 (675)
                      ...+.-+.+|+|+|+||-.....|.++++++++++..+++|+.+.|.|.+
T Consensus        25 ~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~   74 (443)
T PRK13629         25 TLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLC   74 (443)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37799999999999999999999999999999999999999999887743

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=96.96  E-value=0.0005  Score=75.90  Aligned_cols=202  Identities=13%  Similarity=0.070  Sum_probs=107.1

Q ss_pred             ChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHH-HHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhc
Q psy12819         19 KDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVIC-THCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAK   97 (675)
Q Consensus        19 s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~-~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~   97 (675)
                      +.++++...+++++|+|+...| ...+.|.. ..+..++.+.+. ........|..    ++ .++....-+-.++++  
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~----~~-~p~~GG~y~~~~~~~--   72 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELS----SA-YPSAGGIYVWVSRAF--   72 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHH----TT-TTSSTTHHHHHHHHH--
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHh----cc-CCCcCeeeehhhhcc--
Confidence            5678888999999999999999 77777765 444444444443 34444444433    22 222345556667777  


Q ss_pred             CCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhh
Q psy12819         98 GPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVS  177 (675)
Q Consensus        98 g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S  177 (675)
                              ||...+++.....+.......++.....+.+...+......+......+.+..+...-....+..|..+++.
T Consensus        73 --------g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~  144 (426)
T PF13520_consen   73 --------GPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQ  144 (426)
T ss_dssp             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             --------cccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhh
Confidence                    566667777777666666555555555555544443211100001112222222223333344555556555


Q ss_pred             hHHHHHHH-HHhhe---eEEEEcc-cCCC---CC-CCCCCCCCCchhhHhHHHHhhhccceEeeeeccc
Q psy12819        178 MVANLLMG-TGLGI---TFYYIVW-DLHK---PM-EMPQIADISTMPTFFSIVIFAIEAIGVVISFRTA  237 (675)
Q Consensus       178 ~~~~~~~~-~~~~i---i~~~~~~-~~~~---~~-~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~  237 (675)
                      .......+ ..+++   ....... +..+   .+ +......+......++...|+|.|--.....-+|
T Consensus       145 ~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E  213 (426)
T PF13520_consen  145 NILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEE  213 (426)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGG
T ss_pred             hhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhccccccccccccc
Confidence            54444333 12111   1111111 1100   00 1111123445778889999999999888888888

...

>PRK10238 aromatic amino acid transporter; Provisional

Probab=96.90  E-value=0.0026  Score=70.96  Aligned_cols=212  Identities=13%  Similarity=0.087  Sum_probs=110.7

Q ss_pred             ccCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819         13 ESNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG   91 (675)
Q Consensus        13 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~   91 (675)
                      +.+++.+.++..+.-++++||+|++..|-. .+++|- ..++..++.+++....+.-+.|.....+     ...++-+-+
T Consensus         9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P-----~aGg~y~~~   82 (456)
T PRK10238          9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEP-----VAGSFSHFA   82 (456)
T ss_pred             hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCHHHHH
Confidence            477889999999999999999999988876 445564 3444445555555444444444333222     234555555


Q ss_pred             HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcc
Q psy12819         92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLK  171 (675)
Q Consensus        92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~  171 (675)
                      ++.+          ||...+++.....+.....+.+.....++.++...+     +.+...+..+...+...+. ....|
T Consensus        83 ~~~~----------g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~~~~~~~i~~~~~~~lN-~~gv~  146 (456)
T PRK10238         83 YKYW----------GSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYP-----EIPTWVSAAVFFVVINAIN-LTNVK  146 (456)
T ss_pred             HHHc----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----cCcHHHHHHHHHHHHHHHH-HHhHH
Confidence            5555          677777777777666555555544444554443322     2333333333222222222 22233


Q ss_pred             ccchhhhHHHHHHH---HHhhe-eEE--EEcccCCC--CCCCC----C-CCCCCchhhHhHHHHhhhccceEeeeecccc
Q psy12819        172 SLAPVSMVANLLMG---TGLGI-TFY--YIVWDLHK--PMEMP----Q-IADISTMPTFFSIVIFAIEAIGVVISFRTAT  238 (675)
Q Consensus       172 ~L~~~S~~~~~~~~---~~~~i-i~~--~~~~~~~~--~~~~~----~-~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~  238 (675)
                      ....+..+.....+   +.+++ .+.  ......++  .++..    + ...+.++...++...|+|.|--.....-.| 
T Consensus       147 ~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE-  225 (456)
T PRK10238        147 VFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAE-  225 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHh-
Confidence            33333332222111   11111 000  00011111  11100    0 011224456677889999998888888888 


Q ss_pred             ccCCCchhhhhhhcCCCC-ccc
Q psy12819        239 LLSRPVISRELMIGNGRD-HNV  259 (675)
Q Consensus       239 ~~~~~~~~~~~M~~~p~~-~~~  259 (675)
                                 + |||+| .+|
T Consensus       226 -----------~-knP~r~iPr  235 (456)
T PRK10238        226 -----------A-DNPEQSIPK  235 (456)
T ss_pred             -----------h-cChhhHHHH
Confidence                       8 89976 455

>TIGR00814 stp serine transporter

Probab=96.88  E-value=0.0055  Score=66.65  Aligned_cols=146  Identities=15%  Similarity=0.102  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhhc-cCCCC-chhHhhHHHHHHHhhhhhccce
Q psy12819        437 ETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGWR-NTDPL-AESFTRYRNSIHALCVRFDLYS  514 (675)
Q Consensus       437 ~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~-~~~~~-~~~~~~~~~~~~~~~~~~g~~~  514 (675)
                      .=.+.+..+.+|+|+|++|....+.||+..++..++...+++++.+++.|. ..+++ ..++.++.+..      +|+++
T Consensus         7 ~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~------fGk~~   80 (397)
T TIGR00814         7 GWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEH------FGKNW   80 (397)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH------cCHHH
Confidence            345678999999999999999999999997777777777777777766553 22222 34455554444      22221


Q ss_pred             eeeeh---------------HHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHh
Q psy12819        515 RFELS---------------SKISIRISQVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGLG  579 (675)
Q Consensus       515 ~~~~~---------------i~~~~~l~~~~~~~~~~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~~~~  579 (675)
                      ..+..               .-.++.+.+.+.+....+...+....+..+..+-....+..+.+...+-+-....++.++
T Consensus        81 G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~  160 (397)
T TIGR00814        81 GILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILV  160 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence            11111               113344444444333233333433333333332333444667777777555544455555


Q ss_pred             heeeeeecc
Q psy12819        580 ITFYYIVYK  588 (675)
Q Consensus       580 ~v~~~~~~~  588 (675)
                      .+..+...+
T Consensus       161 ~l~~~lip~  169 (397)
T TIGR00814       161 LLSLYLIPH  169 (397)
T ss_pred             HHHHHHHHH
Confidence            555444433

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=96.86  E-value=0.0036  Score=67.24  Aligned_cols=203  Identities=13%  Similarity=0.030  Sum_probs=121.1

Q ss_pred             cCCCCChHHHHHHHHHhhhccccc-hHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819         14 SNNIGKDGETLTHLLKASLGTGIL-SMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE   92 (675)
Q Consensus        14 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~   92 (675)
                      -+++.+..+--+.-+...||+|.. +--.+.+.+|-- -++..+++|++.+.=++.|.|-..+     +++..|+.+.++
T Consensus        11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~-----~p~~gSF~~~a~   84 (462)
T COG1113          11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA-----NPVSGSFSDYAR   84 (462)
T ss_pred             hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-----CCCCCcHHHHHH
Confidence            456677778788889999999974 455567777732 2334566777777767777664432     344679999999


Q ss_pred             HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHH--HHhhcccCc
Q psy12819         93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPL--ILLSWVPNL  170 (675)
Q Consensus        93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~--~pl~~~~~l  170 (675)
                      +.+          |+++.++++..-.....-.+.+-+..++..++..++.     .+.+.+.++..+++  .=+...|..
T Consensus        85 ~~l----------G~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-----vP~Wv~al~~~~l~~~~NL~sVk~F  149 (462)
T COG1113          85 KYL----------GPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-----VPQWVFALAAVVLLLAVNLISVKVF  149 (462)
T ss_pred             HHh----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998          6777777777777776666666666666666555543     35555554443333  334456666


Q ss_pred             cccch-hhhHHHHHHHHH----hheeEEEEcccC--CCCCCCCC-----CCCCCchhhHhHHHHhhhccceEeeeeccc
Q psy12819        171 KSLAP-VSMVANLLMGTG----LGITFYYIVWDL--HKPMEMPQ-----IADISTMPTFFSIVIFAIEAIGVVISFRTA  237 (675)
Q Consensus       171 ~~L~~-~S~~~~~~~~~~----~~ii~~~~~~~~--~~~~~~~~-----~~~~~~~~~~~~i~~faf~~h~~i~~i~~~  237 (675)
                      .++-+ ++++=+..++..    ...+......+.  .+.+....     +..+.++..++-+.+|||.+.-.+--.-.|
T Consensus       150 GE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E  228 (462)
T COG1113         150 GELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE  228 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence            66664 444433332211    111111111111  11122111     124456788999999999987666555555

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.83  E-value=0.0021  Score=68.16  Aligned_cols=204  Identities=12%  Similarity=0.123  Sum_probs=113.4

Q ss_pred             CCChHHHHHHHHHhhhccccchHHHHHHhc---ChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819         17 IGKDGETLTHLLKASLGTGILSMPYAFRNA---GLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV   93 (675)
Q Consensus        17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~---G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~   93 (675)
                      +-|..|....+..+.+|+|++.+|...++.   ||+ +.   ++.+.....-..+..+..++.      +..+..|..++
T Consensus         1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi-~~---ll~~~~~l~~~~l~~~l~~~~------p~~~l~~~~~~   70 (320)
T PF03845_consen    1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWI-SV---LLGGLIGLLLALLIYYLLKRF------PGKTLVEISEK   70 (320)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HH---HHHHHHHHHHHHHHHHHHHHC------CCCCHHHHHHH
Confidence            357889999999999999999999997665   454 33   333333333334444433322      34799999999


Q ss_pred             HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcccc
Q psy12819         94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSL  173 (675)
Q Consensus        94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L  173 (675)
                      .+          ||+...++.....++.+......+...+|.++..+-    .+.+. ..+........-....+.++.+
T Consensus        71 ~~----------Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l----p~TP~-~~i~~~~ll~~~y~a~~G~e~i  135 (320)
T PF03845_consen   71 LF----------GKWLGKIINLLYILYFLLISALVLREFSEFIKTYLL----PETPI-WVIILLFLLVAAYAARKGIEVI  135 (320)
T ss_pred             Hh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CcCCH-HHHHHHHHHHHHHHHhcCHHHH
Confidence            88          677777777777777766665555555555544322    12232 3333333333444456677777


Q ss_pred             chhhhHHHHHHHHHhheeEEEEcccCCCCCCCCCC--CCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhh
Q psy12819        174 APVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQI--ADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMI  251 (675)
Q Consensus       174 ~~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~  251 (675)
                      +..+.+-....+...+.+......+. +++...+.  .++.++....-...+.|.+-....-+...            + 
T Consensus       136 ~R~~~~~~~~~~i~~~~i~~~~~~~~-~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~------------~-  201 (320)
T PF03845_consen  136 ARVAEILFPIFLILLLLILLLSIPNI-DWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPF------------V-  201 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccC-CHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHH------------c-
Confidence            76554444433333333222222221 12222221  24455566555556666655444444444            5 


Q ss_pred             cCCCCccc
Q psy12819        252 GNGRDHNV  259 (675)
Q Consensus       252 ~~p~~~~~  259 (675)
                      ++|+|.+|
T Consensus       202 ~~~~~~~k  209 (320)
T PF03845_consen  202 KDKKKLKK  209 (320)
T ss_pred             CCchHHHH
Confidence            66666665

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PRK11387 S-methylmethionine transporter; Provisional

Probab=96.67  E-value=0.0046  Score=69.26  Aligned_cols=85  Identities=13%  Similarity=0.108  Sum_probs=56.0

Q ss_pred             CCCCCCCccCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCC
Q psy12819          6 PQDGSKTESNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTS   84 (675)
Q Consensus         6 p~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~   84 (675)
                      |.+++.++.+++.+.++.....+.+++|+|++..|-. .+.+|-...++..++.+++......-+.|....+++     .
T Consensus         4 ~~~~~~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-----a   78 (471)
T PRK11387          4 PTSQQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-----T   78 (471)
T ss_pred             CCCCcchhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----C
Confidence            3344334567889999999999999999999988876 466774334555566666666666666665544322     2


Q ss_pred             CCHHHHHHHHH
Q psy12819         85 MSFADIGEVAF   95 (675)
Q Consensus        85 ~sy~~l~~~~~   95 (675)
                      ..+-+-+++.+
T Consensus        79 GG~y~y~~~~~   89 (471)
T PRK11387         79 GAFHVYAARYL   89 (471)
T ss_pred             CCHHHHHHHhc
Confidence            34445555566

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=96.65  E-value=0.0061  Score=67.74  Aligned_cols=65  Identities=14%  Similarity=0.079  Sum_probs=45.5

Q ss_pred             ccCCCCChHHHHHHHHHhhhccccchHHHHH-HhcChh-hHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q psy12819         13 ESNNIGKDGETLTHLLKASLGTGILSMPYAF-RNAGLT-GGIFLTVLVAVICTHCSYILVQCGHVLY   77 (675)
Q Consensus        13 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af-~~~G~~-~g~illi~~~~~~~~t~~lL~~~~~~~~   77 (675)
                      +.+|+.+.++.+...+.+++|+|++..|... +..|-. ..++..++.++++........|....++
T Consensus         5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P   71 (445)
T PRK11357          5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYP   71 (445)
T ss_pred             cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            3567789999999999999999999999864 445532 2444456666666666666666555443

>TIGR00930 2a30 K-Cl cotransporter

Probab=96.63  E-value=0.0075  Score=72.59  Aligned_cols=215  Identities=12%  Similarity=0.075  Sum_probs=121.5

Q ss_pred             CCCCChHHHHHHH-HHhhhccccch-HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819         15 NNIGKDGETLTHL-LKASLGTGILS-MPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE   92 (675)
Q Consensus        15 ~~~~s~~~a~~~l-~~~~iG~GiL~-LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~   92 (675)
                      .++.++++.++.- +.+++|+|+.- +++...++|...+++..++.++++..+..-+.+.+..   ...+....|.-+. 
T Consensus        75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTn---g~p~aGG~Y~yis-  150 (953)
T TIGR00930        75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATN---GVVKGGGAYYLIS-  150 (953)
T ss_pred             CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCccHHHHHHH-
Confidence            4466777777666 99999999965 5567779998878888888888888888777665432   0111223454443 


Q ss_pred             HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcC----CCc-cHHHHHHHHHHHHHHhhcc
Q psy12819         93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTG----TEL-DIRVYISAFLIPLILLSWV  167 (675)
Q Consensus        93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~----~~~-~~~~~~~i~~~~~~pl~~~  167 (675)
                      ++|          |+.....+.+...+.+...+..|.+..++.+..++.....    ... +.+.+.++..+++..+ ..
T Consensus       151 ral----------Gp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~I-n~  219 (953)
T TIGR00930       151 RSL----------GPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGI-SF  219 (953)
T ss_pred             HHh----------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHH-HH
Confidence            344          5555666666666666666778887788887777653210    111 2233333322232222 23


Q ss_pred             cCccccchhhhHHHHHHHHHhheeEEEEc---ccCCC----------CCCC--CCCCCC-CchhhHhHHHHhhhccceEe
Q psy12819        168 PNLKSLAPVSMVANLLMGTGLGITFYYIV---WDLHK----------PMEM--PQIADI-STMPTFFSIVIFAIEAIGVV  231 (675)
Q Consensus       168 ~~l~~L~~~S~~~~~~~~~~~~ii~~~~~---~~~~~----------~~~~--~~~~~~-~~~~~~~~i~~faf~~h~~i  231 (675)
                      ...+..+++..+..+..+++++.++...+   .+.+.          ..+.  +.+.+. .++...++++.+||.|....
T Consensus       220 ~Gvk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~ag  299 (953)
T TIGR00930       220 AGMEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAG  299 (953)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            34555555555444433322222111111   11000          0000  111111 22677778888899888777


Q ss_pred             eeeccccccCCCchhhhhhhcCCCCc
Q psy12819        232 ISFRTATLLSRPVISRELMIGNGRDH  257 (675)
Q Consensus       232 ~~i~~~~~~~~~~~~~~~M~~~p~~~  257 (675)
                      ..+-.|            + |+|+|-
T Consensus       300 an~sgE------------l-KnP~r~  312 (953)
T TIGR00930       300 ANISGD------------L-KDPQKA  312 (953)
T ss_pred             HHHHHh------------c-cChhhh
Confidence            777777            8 999874

>PRK10249 phenylalanine transporter; Provisional

Probab=96.51  E-value=0.0062  Score=67.92  Aligned_cols=212  Identities=10%  Similarity=0.017  Sum_probs=108.3

Q ss_pred             ccCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819         13 ESNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG   91 (675)
Q Consensus        13 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~   91 (675)
                      +.+++.+.++..+..+..++|+|++..|-. .+++|- ..++..++.+++....+.-+.|...+.+     ...+.-+.+
T Consensus        18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P-----~~Gg~~~y~   91 (458)
T PRK10249         18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEP-----VSGSFAHFA   91 (458)
T ss_pred             hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHH
Confidence            345677889999999999999999999875 555675 3555566666666666666655544332     234566667


Q ss_pred             HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCcc
Q psy12819         92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLK  171 (675)
Q Consensus        92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~  171 (675)
                      ++.+          |+...+++.....+.......+.....+..++...    + +.....+..+...++. ....+..+
T Consensus        92 ~~~~----------g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~~~~~~~~~l~~-~lN~~gv~  155 (458)
T PRK10249         92 YKYW----------GPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWF----P-DVPTWIWAAAFFIIIN-AVNLVNVR  155 (458)
T ss_pred             HHHh----------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----C-cCcHHHHHHHHHHHHH-HHHHhcch
Confidence            7776          45555555555444332222222222222222221    1 2222222222222222 22333444


Q ss_pred             ccchhhhHHHHH---HHHHhhee-EE--EEcccCC--CCCCCC-----CCCCCCchhhHhHHHHhhhccceEeeeecccc
Q psy12819        172 SLAPVSMVANLL---MGTGLGIT-FY--YIVWDLH--KPMEMP-----QIADISTMPTFFSIVIFAIEAIGVVISFRTAT  238 (675)
Q Consensus       172 ~L~~~S~~~~~~---~~~~~~ii-~~--~~~~~~~--~~~~~~-----~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~  238 (675)
                      ..+.+.....+.   .++.++++ +.  ......+  +.+...     ....+.++..++....|+|.|--.+...-.| 
T Consensus       156 ~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E-  234 (458)
T PRK10249        156 LYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAE-  234 (458)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHH-
Confidence            444433222111   11111110 00  0000001  111100     0123455678888899999999888888888 


Q ss_pred             ccCCCchhhhhhhcCCCCc-cc
Q psy12819        239 LLSRPVISRELMIGNGRDH-NV  259 (675)
Q Consensus       239 ~~~~~~~~~~~M~~~p~~~-~~  259 (675)
                                 + |||+|- +|
T Consensus       235 -----------~-~~P~k~iPr  244 (458)
T PRK10249        235 -----------A-RDPEKSIPK  244 (458)
T ss_pred             -----------h-cCHhhHHHH
Confidence                       8 898874 44

>PRK10580 proY putative proline-specific permease; Provisional

Probab=96.48  E-value=0.0089  Score=66.69  Aligned_cols=93  Identities=12%  Similarity=0.030  Sum_probs=61.7

Q ss_pred             CccCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHH
Q psy12819         12 TESNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADI   90 (675)
Q Consensus        12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l   90 (675)
                      ++.+++.+.++.....+.+++|+|++.+|.. .+.+|-. .++..++.+++....+..+.|...+.+.     ....-+-
T Consensus         5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~~P~-----~Gg~y~y   78 (457)
T PRK10580          5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVHNPA-----ASSFSRY   78 (457)
T ss_pred             ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHH
Confidence            3456778999999999999999999999876 5566753 5666666666667666666665544321     2344445


Q ss_pred             HHHHHhcCCcccccchhhhHHHHHHHHHHH
Q psy12819         91 GEVAFAKGPAWGRRYARFARICILLGLFLA  120 (675)
Q Consensus        91 ~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~  120 (675)
                      +++.+          ||...+++.....+.
T Consensus        79 ~~~~~----------G~~~gf~~gw~~~~~   98 (457)
T PRK10580         79 AQENL----------GPLAGYITGWTYCFE   98 (457)
T ss_pred             HHHHc----------CcHHHHHHHHHHHHH
Confidence            56665          555566666555443

>PRK10836 lysine transporter; Provisional

Probab=96.48  E-value=0.011  Score=66.47  Aligned_cols=65  Identities=15%  Similarity=0.164  Sum_probs=49.9

Q ss_pred             CccCCCCChHHHHHHHHHhhhccccchHHH-HHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy12819         12 TESNNIGKDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVL   76 (675)
Q Consensus        12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~   76 (675)
                      .+.+++.+.++.....+.++||+|++.+|. +.+++|-...++..++.++++...+.-+.|.....
T Consensus        11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~   76 (489)
T PRK10836         11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYM   76 (489)
T ss_pred             ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            345577899999999999999999999997 67777864456677777777777777676655544

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=96.35  E-value=0.0068  Score=65.27  Aligned_cols=68  Identities=15%  Similarity=0.266  Sum_probs=46.1

Q ss_pred             CCChHHHHHHHHHHhHhHhhhHHHHHhHh----cChhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHH
Q psy12819        432 PVTDGETLTHLLKASLGTGILSMPYAFRN----AGLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSI  503 (675)
Q Consensus       432 ~~s~~~a~~nl~k~~iG~GiL~LP~af~~----~G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~  503 (675)
                      +-|.+|..+.+..+.+|+|++.+|....+    .+|+. .++-.+.+....++...+.++  .|+ ++..+|.+..
T Consensus         2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~-~ll~~~~~~~~~~~~~~l~~~--~p~-~~~~~~~~~~   73 (359)
T TIGR00912         2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWIS-IILGGLIIIFLLCLMIKIMSK--FPE-KNFSEILSKY   73 (359)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHH-HHHHHHHHHHHHHHHHHHHHH--CCC-CCHHHHHHHH
Confidence            45788999999999999999999997544    55653 444455555556666666543  343 3455666655

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG3832|consensus

Probab=95.80  E-value=0.0094  Score=56.67  Aligned_cols=46  Identities=28%  Similarity=0.400  Sum_probs=40.4

Q ss_pred             HHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHH
Q psy12819        438 TLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYI  483 (675)
Q Consensus       438 a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~l  483 (675)
                      ...-++|-++|+|-|+||+||+..||+.++.+|.+.++++.-+.-.
T Consensus        17 gllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatf   62 (319)
T KOG3832|consen   17 GLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATF   62 (319)
T ss_pred             hHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            3455778899999999999999999999999999999998877644

>TIGR00911 2A0308 L-type amino acid transporter

Probab=95.76  E-value=0.037  Score=62.48  Aligned_cols=65  Identities=12%  Similarity=0.213  Sum_probs=43.9

Q ss_pred             CccCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChh-hHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy12819         12 TESNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLT-GGIFLTVLVAVICTHCSYILVQCGHVL   76 (675)
Q Consensus        12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~-~g~illi~~~~~~~~t~~lL~~~~~~~   76 (675)
                      ++.+++.+.++.+...+.+++|+|++..|.. .+++|-. ..++..++.+++....+..+.|.....
T Consensus        38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~  104 (501)
T TIGR00911        38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTI  104 (501)
T ss_pred             cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3456778999999999999999999999875 5556743 122334555666666666666655433

>PRK10655 potE putrescine transporter; Provisional

Probab=95.62  E-value=0.055  Score=59.98  Aligned_cols=48  Identities=17%  Similarity=0.182  Sum_probs=37.0

Q ss_pred             CCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHH
Q psy12819        430 AHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICT  478 (675)
Q Consensus       430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~  478 (675)
                      +++-+.++.+...+.+++|+|++.+|..+++.|- .+++..++.+++..
T Consensus         5 ~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~   52 (438)
T PRK10655          5 SNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSM   52 (438)
T ss_pred             cCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHH
Confidence            4567899999999999999999999999988886 34555455444433

>PRK15049 L-asparagine permease; Provisional

Probab=95.57  E-value=0.029  Score=63.32  Aligned_cols=76  Identities=12%  Similarity=0.047  Sum_probs=51.9

Q ss_pred             cCCCCChHHHHHHHHHhhhccccchHHH-HHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819         14 SNNIGKDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE   92 (675)
Q Consensus        14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~   92 (675)
                      .+++.+.++..+.-+.++||+|++..|. +.+++|- .+++..++.+++....+.-+.|.....+     ...+.-+-++
T Consensus        26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P-----~aGg~y~y~~   99 (499)
T PRK15049         26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRP-----SSGSFVSYAR   99 (499)
T ss_pred             hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHH
Confidence            3456788899999999999999998888 6777785 3555566666666666655655443322     2345556666


Q ss_pred             HHH
Q psy12819         93 VAF   95 (675)
Q Consensus        93 ~~~   95 (675)
                      +.+
T Consensus       100 ~~~  102 (499)
T PRK15049        100 EFL  102 (499)
T ss_pred             HHh
Confidence            666

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=95.36  E-value=0.15  Score=52.75  Aligned_cols=135  Identities=14%  Similarity=0.171  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhhhccccchHHHH---HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhc
Q psy12819         21 GETLTHLLKASLGTGILSMPYA---FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAK   97 (675)
Q Consensus        21 ~~a~~~l~~~~iG~GiL~LP~a---f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~   97 (675)
                      .+-.+-.+.+++|+|-=+==..   |..-|+. |....++.+.+-..+...+.+..++.+      ..+|+|+-++.+  
T Consensus         6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~------a~~y~~~~~~v~--   76 (349)
T COG3949           6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN------ATSYREILKYVS--   76 (349)
T ss_pred             HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHh--
Confidence            4455667779999997664443   3345665 666677777777777777777666543      579999999998  


Q ss_pred             CCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhh
Q psy12819         98 GPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVS  177 (675)
Q Consensus        98 g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S  177 (675)
                              |++..++.|+.+.+..++.++.-+--.++.+++.++      ++.+.-.++....+..+-++++.+.+-.+.
T Consensus        77 --------~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~------lP~wiGali~i~~v~i~lfl~~vegi~tvn  142 (349)
T COG3949          77 --------GPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG------LPYWIGALIIILLVLILLFLGRVEGIITVN  142 (349)
T ss_pred             --------hHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC------ccHHHHHHHHHHHHHHHHHHhcccceeeeh
Confidence                    678888999999999999999999888888877764      344443344444445555666666655444


Q ss_pred             h
Q psy12819        178 M  178 (675)
Q Consensus       178 ~  178 (675)
                      .
T Consensus       143 ~  143 (349)
T COG3949         143 G  143 (349)
T ss_pred             e
Confidence            3

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=95.15  E-value=0.088  Score=58.95  Aligned_cols=55  Identities=16%  Similarity=0.230  Sum_probs=38.8

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHHH-HhHhcChhHHHHHHHHHHHHHHHHHHHH
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYIL  484 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~-af~~~G~v~g~i~l~~~a~l~~y~~~lL  484 (675)
                      .+|+.+.++...-.+.+.||+|++-.|. +++++|- ..++..++.+++......-+
T Consensus        18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~   73 (469)
T PRK11049         18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAM   73 (469)
T ss_pred             hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHH
Confidence            4456788899999999999999998765 8888887 33545555555444444333

>PRK11387 S-methylmethionine transporter; Provisional

Probab=95.13  E-value=0.12  Score=58.03  Aligned_cols=73  Identities=16%  Similarity=0.241  Sum_probs=43.1

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHHHH-hHhcChhHHHHHHHHHHHHHH---HHHHHHhhccCCCCchhHhhHHHHH
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICT---HCSYILGWRNTDPLAESFTRYRNSI  503 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~a-f~~~G~v~g~i~l~~~a~l~~---y~~~lL~~~~~~~~~~~~~~~~~~~  503 (675)
                      .+|+.+.++...--+.+++|+|++..|.. .+++|-...++..++.+++..   +|.-.|..  +.|...+...|.+..
T Consensus        12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas--~~P~aGG~y~y~~~~   88 (471)
T PRK11387         12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSV--AMPETGAFHVYAARY   88 (471)
T ss_pred             hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCHHHHHHHh
Confidence            34567899999999999999999877765 567774322333344443333   33333433  334333444554444

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=94.75  E-value=0.057  Score=60.02  Aligned_cols=197  Identities=11%  Similarity=0.065  Sum_probs=97.3

Q ss_pred             HHhhhccccchHHH-HHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHhcCCcccccch
Q psy12819         28 LKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFAKGPAWGRRYA  106 (675)
Q Consensus        28 ~~~~iG~GiL~LP~-af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~~g~~~~~~~g  106 (675)
                      +.++||+|++..|- +.++.|- ..++..++.+++....+..+.|.....+     +....-+-+++.+          |
T Consensus         4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P-----~~Gg~y~y~~~~~----------G   67 (446)
T PRK10197          4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATP-----DTGSFSTYADKAI----------G   67 (446)
T ss_pred             ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCHHHHHHHHc----------C
Confidence            46889999999998 6888885 3666666667766666666655544332     2345556666666          5


Q ss_pred             hhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccccchhhhHHHHHH--
Q psy12819        107 RFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLM--  184 (675)
Q Consensus       107 ~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~L~~~S~~~~~~~--  184 (675)
                      |....++.....+.....+.......+..+    ..+.+ +.+...+..+...++. +......|..+.+..+.....  
T Consensus        68 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~l~~~~-~lN~~gv~~~~~i~~~~~~~ki~  141 (446)
T PRK10197         68 RWAGYTIGWLYWWFWVLVIPLEANIAAMIL----HSWVP-GIPIWLFSLVITLALT-GSNLLSVKNYGEFEFWLALCKVI  141 (446)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccc-cCcHHHHHHHHHHHHH-HHHHHhhHHHhhhHHHHHHHHHH
Confidence            555555555554433222221111111111    11211 2233232222222222 222333444433333322211  


Q ss_pred             -HHHhhee---EEEEcccCCCC-------CCCC-CCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhhhhhc
Q psy12819        185 -GTGLGIT---FYYIVWDLHKP-------MEMP-QIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRELMIG  252 (675)
Q Consensus       185 -~~~~~ii---~~~~~~~~~~~-------~~~~-~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~~M~~  252 (675)
                       ++.+++.   ......+..+.       +... ....+.++..++....|+|.|--.+...-.|            + |
T Consensus       142 ~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E------------~-k  208 (446)
T PRK10197        142 AILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAE------------S-D  208 (446)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHH------------h-c
Confidence             1111111   01100000000       0000 0112346778888999999999999888888            8 9


Q ss_pred             CCCC-ccc
Q psy12819        253 NGRD-HNV  259 (675)
Q Consensus       253 ~p~~-~~~  259 (675)
                      ||+| .+|
T Consensus       209 nP~r~iPr  216 (446)
T PRK10197        209 TPEKHIVR  216 (446)
T ss_pred             ChhhhHHH
Confidence            9987 445

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=94.70  E-value=0.096  Score=58.02  Aligned_cols=72  Identities=15%  Similarity=0.142  Sum_probs=44.8

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChh--HHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHH
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLT--GGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNS  502 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v--~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~  502 (675)
                      ++|+-+.++.....+.+++|+|++.+|...++.|-.  .+-+...+.++....|.-.|..  +.|...+...|.+.
T Consensus         3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s--~~P~~GG~y~y~~~   76 (435)
T PRK10435          3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLAT--KNPQQGGPIAYAGE   76 (435)
T ss_pred             CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCCCCCChhHHHHH
Confidence            345678999999999999999999999999987752  2222222233333444444433  34443344445443

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=94.40  E-value=0.14  Score=56.91  Aligned_cols=74  Identities=18%  Similarity=0.304  Sum_probs=48.0

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHH-HHhHhcChhHHHHHHHHHHHHHHHHHHHHhhc-cCCCCchhHhhHHHHH
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMP-YAFRNAGLTGGIFLTVLVAVICTHCSYILGWR-NTDPLAESFTRYRNSI  503 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP-~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~~-~~~~~~~~~~~~~~~~  503 (675)
                      .+|+-+..+..+..+.+.+|+|++.+| .+.+++|-. +.+..++.+++.......+.+- .+.|...+..+|.+..
T Consensus        10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~   85 (452)
T TIGR01773        10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA   85 (452)
T ss_pred             HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            445678899999999999999999999 778898864 4555555555544433333332 2334444444554443

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR00835 agcS amino acid carrier protein

Probab=94.25  E-value=0.98  Score=49.36  Aligned_cols=62  Identities=19%  Similarity=0.233  Sum_probs=48.7

Q ss_pred             CCCCChHHHHHHHHHhhhccc-cchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHh
Q psy12819         15 NNIGKDGETLTHLLKASLGTG-ILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLY   77 (675)
Q Consensus        15 ~~~~s~~~a~~~l~~~~iG~G-iL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~   77 (675)
                      +++.|.+++.+..+.+.+|+| ++++|-|.+..| ..+++-+-+.+++..-+.+.-+-..+++.
T Consensus        44 ~g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr  106 (425)
T TIGR00835        44 KGGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYR  106 (425)
T ss_pred             CCCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHee
Confidence            345899999999999999998 999999988888 44777777777776666666666566654

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=94.14  E-value=0.074  Score=59.22  Aligned_cols=218  Identities=12%  Similarity=0.033  Sum_probs=108.7

Q ss_pred             ccCCCCChHH-HHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819         13 ESNNIGKDGE-TLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG   91 (675)
Q Consensus        13 ~~~~~~s~~~-a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~   91 (675)
                      +.+++.+.++ .......+++|.|++.+|......+ ....+..++.+++....+....|...+.+     +...+-+-+
T Consensus         9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p-----~~GG~y~~~   82 (466)
T COG0531           9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIP-----SAGGAYAYA   82 (466)
T ss_pred             hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCCeeeeh
Confidence            3445556666 7888888999999999999988776 22222234444444444444544443221     223344445


Q ss_pred             HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHH--HHHHHHHhhcccC
Q psy12819         92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISA--FLIPLILLSWVPN  169 (675)
Q Consensus        92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~  169 (675)
                      ++.+          ||...+.+.....+.......+.....++.+...++.......+...+..+  ....+.-+...+.
T Consensus        83 ~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G  152 (466)
T COG0531          83 KRAL----------GPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRG  152 (466)
T ss_pred             hhhc----------CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhh
Confidence            5555          443345666666665555555555555555555444210000111122221  1222222233444


Q ss_pred             ccccchhhhHHHHHHHHHhheeEEEE-cccCCC-CCCCC----CCCCCCchhhHhHHHHhhhccceEeeeeccccccCCC
Q psy12819        170 LKSLAPVSMVANLLMGTGLGITFYYI-VWDLHK-PMEMP----QIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRP  243 (675)
Q Consensus       170 l~~L~~~S~~~~~~~~~~~~ii~~~~-~~~~~~-~~~~~----~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~  243 (675)
                      .+...+...+.....+...+++.... .....+ .....    .......+...+....++|.|-....+.-+|      
T Consensus       153 ~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E------  226 (466)
T COG0531         153 IKASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEE------  226 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHH------
Confidence            55555544444333322222111110 000100 01111    1112234677788889999999888888888      


Q ss_pred             chhhhhhhcCCCCc-cc
Q psy12819        244 VISRELMIGNGRDH-NV  259 (675)
Q Consensus       244 ~~~~~~M~~~p~~~-~~  259 (675)
                            + |||+|. +|
T Consensus       227 ------~-knp~r~ip~  236 (466)
T COG0531         227 ------V-KNPKRTIPR  236 (466)
T ss_pred             ------h-cCccccccH
Confidence                  8 998655 55

>KOG1286|consensus

Probab=93.95  E-value=0.21  Score=56.50  Aligned_cols=209  Identities=12%  Similarity=0.052  Sum_probs=101.4

Q ss_pred             CCCCChHHHHHHHHHhhhccccchH-HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHH
Q psy12819         15 NNIGKDGETLTHLLKASLGTGILSM-PYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEV   93 (675)
Q Consensus        15 ~~~~s~~~a~~~l~~~~iG~GiL~L-P~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~   93 (675)
                      ++..+.+.-.+.=+.+++|+|++-. ..+.++.|=..-++-.++++..++.++.-+.|-..+.+..    ..++-.-+. 
T Consensus        29 kR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~----aGs~~~ya~-  103 (554)
T KOG1286|consen   29 KRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS----AGSFYTYAY-  103 (554)
T ss_pred             hccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc----cccceeeee-
Confidence            4455555555666889999998754 5567777765455555556666666666565544333210    112222222 


Q ss_pred             HHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHH--Hhhc-C-CCccHHHHHHH--HHHHHHHhhcc
Q psy12819         94 AFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI--NHYT-G-TELDIRVYISA--FLIPLILLSWV  167 (675)
Q Consensus        94 ~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~--~~~~-~-~~~~~~~~~~i--~~~~~~pl~~~  167 (675)
                               |..|+....++.....+...-.+.+-....+..++...  +... . .+.+...|..+  ..++++.+.-.
T Consensus       104 ---------~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv  174 (554)
T KOG1286|consen  104 ---------RFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGV  174 (554)
T ss_pred             ---------eeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHH
Confidence                     22345555666666666655555555555555555543  0000 0 11222233322  22222333334


Q ss_pred             cCccccchhhhHHHHHHHHHh---heeEEE-Ecc-cCCCCC------C-CCCCC-CCCchhhHhHHHHhhhccceEeeee
Q psy12819        168 PNLKSLAPVSMVANLLMGTGL---GITFYY-IVW-DLHKPM------E-MPQIA-DISTMPTFFSIVIFAIEAIGVVISF  234 (675)
Q Consensus       168 ~~l~~L~~~S~~~~~~~~~~~---~ii~~~-~~~-~~~~~~------~-~~~~~-~~~~~~~~~~i~~faf~~h~~i~~i  234 (675)
                      +-.-.....+...-+.+.+.+   .+++.. ... |..++.      + ..... .++++...+-+..|+|.|--.+-..
T Consensus       175 ~~~ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~  254 (554)
T KOG1286|consen  175 LAYGEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATT  254 (554)
T ss_pred             hhccceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHH
Confidence            433333433333322222222   222211 111 111111      1 01111 2677888999999999987777666


Q ss_pred             ccc
Q psy12819        235 RTA  237 (675)
Q Consensus       235 ~~~  237 (675)
                      -.|
T Consensus       255 a~E  257 (554)
T KOG1286|consen  255 AEE  257 (554)
T ss_pred             HHh
Confidence            666

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=93.85  E-value=0.36  Score=53.46  Aligned_cols=205  Identities=16%  Similarity=0.105  Sum_probs=116.9

Q ss_pred             cCCCCChHHHHHHHHHhhhccccc-hHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819         14 SNNIGKDGETLTHLLKASLGTGIL-SMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE   92 (675)
Q Consensus        14 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~   92 (675)
                      -+++.....-.+.-+...||+|++ +.-.+.+++|-...++..++++.+.+..+.-|.|-+..++.     ..+|..-+.
T Consensus        42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-----sGsF~~ya~  116 (541)
T COG0833          42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-----SGSFSTYAT  116 (541)
T ss_pred             hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCchhhhhh
Confidence            446667777778889999999985 77889999999988888999999999999999987776542     356887777


Q ss_pred             HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc--ccCc
Q psy12819         93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSW--VPNL  170 (675)
Q Consensus        93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l  170 (675)
                      +-.+  |        -....+...-.+...-++..-+...+.    +++.+.+.+.+...|++++.++++.+..  .|..
T Consensus       117 rfvd--p--------a~GFa~gWnYw~~w~v~~~~El~aa~~----vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~f  182 (541)
T COG0833         117 RFVD--P--------AFGFALGWNYWLNWAVTLPLELTAASL----VIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGF  182 (541)
T ss_pred             hhcC--c--------hHHHHHHHHHHHHHHHHhhHHHHHHHH----hhhhhcCCCCChHHHHHHHHHHHHHHHHhccccc
Confidence            7652  2        122222222222222221111222222    2333332335777888887776665554  4555


Q ss_pred             cccc-hhhhHHHHHHHH--Hhhee-EEEEcccCCC-----CCC-CCCCCCCCchhhHhHHHHhhhccceEeeeeccc
Q psy12819        171 KSLA-PVSMVANLLMGT--GLGIT-FYYIVWDLHK-----PME-MPQIADISTMPTFFSIVIFAIEAIGVVISFRTA  237 (675)
Q Consensus       171 ~~L~-~~S~~~~~~~~~--~~~ii-~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~  237 (675)
                      .+-- |+|.+=++.++.  .+.++ +.....++..     +.+ ......+.++...+-+..|||.|.-.+--.-.|
T Consensus       183 GE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgE  259 (541)
T COG0833         183 GETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGE  259 (541)
T ss_pred             ceehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecc
Confidence            5544 344443333221  11111 1211121111     111 112233456677777788999887776555555

>PRK15049 L-asparagine permease; Provisional

Probab=93.75  E-value=0.41  Score=54.00  Aligned_cols=73  Identities=15%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             CCCCChHHHHHHHHHHhHhHhhhHHHH-HhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819        430 AHPVTDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI  503 (675)
Q Consensus       430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~-af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~  503 (675)
                      +|+.+.++..+--+.++||+|++..|. +++++|= .+++..++.+++..-.+.-+.+ ....|...+...|.+..
T Consensus        27 ~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~  101 (499)
T PRK15049         27 HKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF  101 (499)
T ss_pred             hccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            455688899999999999999988776 7888885 3455555555544444444433 23345444555555544

>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex

Probab=93.66  E-value=1.5  Score=46.46  Aligned_cols=182  Identities=16%  Similarity=0.167  Sum_probs=115.1

Q ss_pred             CCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHH----HHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819         17 IGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVIC----THCSYILVQCGHVLYRRTKVTSMSFADIGE   92 (675)
Q Consensus        17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~----~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~   92 (675)
                      +++.+..+.+=..++-|+|-+-=|-.-++-||+++.+.+++-+.+.    -|...+..       -|  .+.+|.+|+++
T Consensus        51 P~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~S-------vR--~~G~Si~~i~~  121 (376)
T PF02554_consen   51 PTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMAS-------VR--HKGKSIGEIAG  121 (376)
T ss_pred             CCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhh-------hc--CCCccHHHHHH
Confidence            5677788888899999999999999999999999988776654443    33322221       12  23579999999


Q ss_pred             HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccc
Q psy12819         93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKS  172 (675)
Q Consensus        93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~  172 (675)
                      +..          ||++|.+..+...+.+.-...++....++.+...-      ......++.+...+.+-+...|.=-+
T Consensus       122 ~~l----------G~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p------~~~~~~~~~I~~Ai~~G~~~y~~~~~  185 (376)
T PF02554_consen  122 KYL----------GKRAKKLFLIFIFFLLILVIAVFADVVANTFVNSP------WAATSSLLFIPIAILFGLLVYKRGGN  185 (376)
T ss_pred             HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh------hHHHHHHHHHHHHHHHhHhheecCCc
Confidence            988          78899999999888888777777665555543311      11223344444444444445455555


Q ss_pred             cchhhhHHHHHHHHHhheeEEEEcccCCCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeeccc
Q psy12819        173 LAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTA  237 (675)
Q Consensus       173 L~~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~  237 (675)
                      +...|.+++..++.++..-.+.     |- +.      .+  ....-.+++.|.....+.|+-.=
T Consensus       186 ~~~~t~i~vvll~~~v~~G~~~-----p~-~~------~~--~~~W~~ii~~Y~~iAs~lPVw~L  236 (376)
T PF02554_consen  186 LGPATIIGVVLLLLAVWLGMYF-----PI-SL------LS--VTTWIIIIFIYYFIASVLPVWKL  236 (376)
T ss_pred             hHhhHHHHHHHHHHHHHhhhhc-----cc-cc------Cc--HHHHHHHHHHHHHHHHHhhHHHH
Confidence            7778888877655444433221     10 00      01  12223356666666667777663

This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane

>PRK10836 lysine transporter; Provisional

Probab=93.23  E-value=0.52  Score=53.05  Aligned_cols=72  Identities=21%  Similarity=0.314  Sum_probs=46.8

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHHH-HhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHH
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYR  500 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~-af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~  500 (675)
                      .+|+.+.++.....+.++||+|++.+|. +.+++|-...++..++.++++.-...-+.+ ..+.|...+...|.
T Consensus        13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~   86 (489)
T PRK10836         13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYG   86 (489)
T ss_pred             ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Confidence            3456788999999999999999999995 788888643455555556555544444433 22334433443443

>TIGR00930 2a30 K-Cl cotransporter

Probab=93.02  E-value=0.27  Score=59.53  Aligned_cols=56  Identities=13%  Similarity=0.119  Sum_probs=40.6

Q ss_pred             CCCCChHHHHHHH-HHHhHhHhhh-HHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHh
Q psy12819        430 AHPVTDGETLTHL-LKASLGTGIL-SMPYAFRNAGLTGGIFLTVLVAVICTHCSYILG  485 (675)
Q Consensus       430 ~~~~s~~~a~~nl-~k~~iG~GiL-~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~  485 (675)
                      .++-++++.++.- +..++|+|+. -+++...+.|...+.+..++.++++..+..-+.
T Consensus        75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~s  132 (953)
T TIGR00930        75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMS  132 (953)
T ss_pred             CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456888888777 8999999965 556667799977667777776666666665543

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=92.97  E-value=0.87  Score=51.14  Aligned_cols=117  Identities=11%  Similarity=-0.019  Sum_probs=61.2

Q ss_pred             CccCCCCChHHHHHHHHHhhhc--cccch-HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHH
Q psy12819         12 TESNNIGKDGETLTHLLKASLG--TGILS-MPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFA   88 (675)
Q Consensus        12 ~~~~~~~s~~~a~~~l~~~~iG--~GiL~-LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~   88 (675)
                      .+.+++.+.++.+.--+. .+|  .|+.. .+.+.++.|-...+...++.+++....+..+.|.....+     +....-
T Consensus         8 ~~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P-----~~Gg~y   81 (482)
T TIGR00907         8 PELKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYP-----TSGGQY   81 (482)
T ss_pred             ceeecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCC-----CCccHH
Confidence            345566777766544443 454  55533 445677778654455666677776666666666544332     223444


Q ss_pred             HHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHH
Q psy12819         89 DIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI  140 (675)
Q Consensus        89 ~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~  140 (675)
                      +-+++++  |++    +|+...+++.....+.....+.+.....++.+..+.
T Consensus        82 ~~~~~~~--g~~----~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~  127 (482)
T TIGR00907        82 FWSAKLA--PPR----QMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIV  127 (482)
T ss_pred             HHHHHhc--ccc----cccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555  333    355555565555555444444443334444444433

>PRK10238 aromatic amino acid transporter; Provisional

Probab=92.70  E-value=0.72  Score=51.42  Aligned_cols=74  Identities=22%  Similarity=0.267  Sum_probs=44.8

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHHH-HhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI  503 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~-af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~  503 (675)
                      .+|+-+.++..+--+.+.||+|++..|. +.+++|- ..++..++.+++..-...-+.+ ..+.|...++.+|.+..
T Consensus        10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~   85 (456)
T PRK10238         10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKY   85 (456)
T ss_pred             hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            4456788899999999999999977765 5566664 3344444444444444443433 23445555555555544

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=92.54  E-value=0.75  Score=51.09  Aligned_cols=35  Identities=20%  Similarity=0.231  Sum_probs=30.3

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcCh
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGL  463 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~  463 (675)
                      .+|+-+.++.+...+.+++|+|++.+|......|-
T Consensus         6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~   40 (445)
T PRK10644          6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG   40 (445)
T ss_pred             cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH
Confidence            44567899999999999999999999998888763

>PRK11021 putative transporter; Provisional

Probab=92.47  E-value=1.2  Score=48.81  Aligned_cols=67  Identities=19%  Similarity=0.149  Sum_probs=39.0

Q ss_pred             ChHHHHHHHHHHhHhHhhhHHHHHhH-hcChhHHHHHHHHHH---HHHHHHHHHHhhccCCCCchhHhhHHHHH
Q psy12819        434 TDGETLTHLLKASLGTGILSMPYAFR-NAGLTGGIFLTVLVA---VICTHCSYILGWRNTDPLAESFTRYRNSI  503 (675)
Q Consensus       434 s~~~a~~nl~k~~iG~GiL~LP~af~-~~G~v~g~i~l~~~a---~l~~y~~~lL~~~~~~~~~~~~~~~~~~~  503 (675)
                      +.+++....+.+++|+|++.+|.... +.|= ..++..++.+   ....+|.-.|..+  .|...+...|.+..
T Consensus         2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~--~P~aGG~y~y~~~~   72 (410)
T PRK11021          2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRH--FPHAGGPAHFVGMA   72 (410)
T ss_pred             cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCHHHhHHHH
Confidence            57889999999999999999987544 4452 2233333333   3334444444333  34334444555544

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=92.40  E-value=1.7  Score=45.99  Aligned_cols=145  Identities=13%  Similarity=0.161  Sum_probs=80.9

Q ss_pred             CChHHHHHHHHHHhHhHhhhHHHHHhHhc---ChhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHHHHhhhh
Q psy12819        433 VTDGETLTHLLKASLGTGILSMPYAFRNA---GLTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSIHALCVR  509 (675)
Q Consensus       433 ~s~~~a~~nl~k~~iG~GiL~LP~af~~~---G~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~  509 (675)
                      -|..|...-+..+.+|+|++.+|....+.   ||+. .++-.+.+.+..|....+.++.++   ++..++.+..      
T Consensus         2 IS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~-~ll~~~~~l~~~~l~~~l~~~~p~---~~l~~~~~~~------   71 (320)
T PF03845_consen    2 ISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWIS-VLLGGLIGLLLALLIYYLLKRFPG---KTLVEISEKL------   71 (320)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH-HHHHHHHHHHHHHHHHHHHHHCCC---CCHHHHHHHH------
Confidence            46789999999999999999999987555   6875 666666777777777666544332   3345555544      


Q ss_pred             hccceeeeeh--------HHHHHHHHHHHh---hhcCCCCcchhHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHH
Q psy12819        510 FDLYSRFELS--------SKISIRISQVIN---HYTGTELDIRVYISAFLIPLILLSWVPNLKSLAPVSMVANLLMGTGL  578 (675)
Q Consensus       510 ~g~~~~~~~~--------i~~~~~l~~~~~---~~~~~~~~~~~~i~i~~~~~~pl~~ir~l~~L~~~S~~a~~~i~~~~  578 (675)
                      +|++....+.        ...+..++...+   ...-.+.+ ...+.....+..-..--+.++.++..+.+.....+...
T Consensus        72 ~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP-~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~  150 (320)
T PF03845_consen   72 FGKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLPETP-IWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILL  150 (320)
T ss_pred             hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            2221111100        113333333332   21111112 22222222233344455778888887766666666666


Q ss_pred             hheeeeeecc
Q psy12819        579 GITFYYIVYK  588 (675)
Q Consensus       579 ~~v~~~~~~~  588 (675)
                      +.+......+
T Consensus       151 ~~i~~~~~~~  160 (320)
T PF03845_consen  151 LLILLLSIPN  160 (320)
T ss_pred             HHHHHHhccc
Confidence            6666544443

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>TIGR00911 2A0308 L-type amino acid transporter

Probab=91.90  E-value=0.41  Score=54.03  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=28.6

Q ss_pred             cCCCCCChHHHHHHHHHHhHhHhhhHHHHH-hHhcCh
Q psy12819        428 KLAHPVTDGETLTHLLKASLGTGILSMPYA-FRNAGL  463 (675)
Q Consensus       428 ~~~~~~s~~~a~~nl~k~~iG~GiL~LP~a-f~~~G~  463 (675)
                      +.+|+-+.++...-.+.+++|+|++..|.. .+++|-
T Consensus        39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~   75 (501)
T TIGR00911        39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGS   75 (501)
T ss_pred             ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCC
Confidence            345667889999888999999999888864 666774

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=91.49  E-value=0.95  Score=51.06  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=32.7

Q ss_pred             cCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHH
Q psy12819         14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVI   61 (675)
Q Consensus        14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~   61 (675)
                      ++++.+.++-+...+.+++|.+  .+|.++++.|.. +++..++.+.+
T Consensus         5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~   49 (496)
T PRK15238          5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAIL   49 (496)
T ss_pred             ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHH
Confidence            3567899999988899999976  568889988864 44444444433

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=90.90  E-value=1  Score=50.58  Aligned_cols=61  Identities=10%  Similarity=-0.078  Sum_probs=36.3

Q ss_pred             CccCCCCChHHHHHHHHHh-hhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhh
Q psy12819         12 TESNNIGKDGETLTHLLKA-SLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCG   73 (675)
Q Consensus        12 ~~~~~~~s~~~a~~~l~~~-~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~   73 (675)
                      .+-+|+.+.++.+..-++. .+|+|+.++|.. ..+.|- ..+...++.++.......-+.|..
T Consensus         9 ~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~   71 (475)
T TIGR03428         9 PQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELA   71 (475)
T ss_pred             cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677888887666665 488998888765 455664 234444444444444444444433

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=90.81  E-value=3.2  Score=47.52  Aligned_cols=59  Identities=19%  Similarity=0.290  Sum_probs=37.5

Q ss_pred             CCCCChHHHHHHHHHHhHhHhhhHHHHHh--HhcChh--HHHHHHHHHHHHHHHHHHHHhhcc
Q psy12819        430 AHPVTDGETLTHLLKASLGTGILSMPYAF--RNAGLT--GGIFLTVLVAVICTHCSYILGWRN  488 (675)
Q Consensus       430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~af--~~~G~v--~g~i~l~~~a~l~~y~~~lL~~~~  488 (675)
                      +|+-+.++.+..-+.+++|+|+..+|...  +..|-.  .+.++-.+.+.+...|.-.+..+.
T Consensus        27 ~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~   89 (557)
T TIGR00906        27 KRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARV   89 (557)
T ss_pred             hhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            45578999999999999999999999643  346632  233333333444455555554433

>PRK10249 phenylalanine transporter; Provisional

Probab=90.61  E-value=1.3  Score=49.33  Aligned_cols=73  Identities=18%  Similarity=0.180  Sum_probs=44.1

Q ss_pred             CCCCChHHHHHHHHHHhHhHhhhHHHH-HhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819        430 AHPVTDGETLTHLLKASLGTGILSMPY-AFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI  503 (675)
Q Consensus       430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~-af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~  503 (675)
                      +|+.+.++..+-.+.+.+|+|++.+|. +.+++|-. .++..++.+++......-+.+ ..+.|...+..+|.+..
T Consensus        20 ~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~~   94 (458)
T PRK10249         20 HRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKY   94 (458)
T ss_pred             hccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence            345677888888999999999988775 55666752 444555555554444444433 22334444445555444

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=90.37  E-value=0.46  Score=53.27  Aligned_cols=63  Identities=16%  Similarity=0.275  Sum_probs=43.8

Q ss_pred             HHhhhccccc-hHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHH
Q psy12819         28 LKASLGTGIL-SMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAF   95 (675)
Q Consensus        28 ~~~~iG~GiL-~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~   95 (675)
                      +.+++|+|++ +.+.+..+.|.....+..++.+++...++.-+.|..++.++     ..++-+.+++.+
T Consensus         7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-----~Gg~y~y~~~~l   70 (478)
T PF00324_consen    7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-----AGGFYAYASRGL   70 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-----ccchhhhhhhcc
Confidence            4566777765 45668888998767777888888888888888887766542     245555555665

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>PRK10580 proY putative proline-specific permease; Provisional

Probab=90.22  E-value=2.4  Score=47.24  Aligned_cols=74  Identities=22%  Similarity=0.269  Sum_probs=44.2

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHHHH-hHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI  503 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~a-f~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~  503 (675)
                      .+|+-+.++..+..+.+.+|+|++.+|.. .+.+|-- ..+..++.+++.......+.+ ..+.|...+..+|.+..
T Consensus         7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~~   82 (457)
T PRK10580          7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQEN   82 (457)
T ss_pred             ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            34557888999999999999999999765 5666752 344444444444444433332 12344444444454443

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=89.80  E-value=3.4  Score=46.22  Aligned_cols=58  Identities=16%  Similarity=0.173  Sum_probs=38.3

Q ss_pred             CCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcC-h---hHHHHHHHHHHHHHHHHHHHHhhc
Q psy12819        430 AHPVTDGETLTHLLKASLGTGILSMPYAFRNAG-L---TGGIFLTVLVAVICTHCSYILGWR  487 (675)
Q Consensus       430 ~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G-~---v~g~i~l~~~a~l~~y~~~lL~~~  487 (675)
                      +|+-|.+++.+..+.+++|+|++.+|......| -   +.+-++..+...+..++.-.|..+
T Consensus         6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~   67 (473)
T TIGR00905         6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATK   67 (473)
T ss_pred             CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456799999999999999999999999876544 2   122222233333444555555433

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00908 2A0305 ethanolamine permease

Probab=89.04  E-value=2.2  Score=47.21  Aligned_cols=73  Identities=14%  Similarity=0.057  Sum_probs=42.1

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHH---HHHHHHHHHhhccCCCCchhHhhHHHHH
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAV---ICTHCSYILGWRNTDPLAESFTRYRNSI  503 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~---l~~y~~~lL~~~~~~~~~~~~~~~~~~~  503 (675)
                      .+|+-|.++...--+.+.+|....+.+.+++.+|+..-.+..++.++   ...+|.-.|..+  .|...+...|.+..
T Consensus         5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~--~P~~Gg~y~~~~~~   80 (442)
T TIGR00908         5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTM--IPTAGGGYGFARRA   80 (442)
T ss_pred             hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHH
Confidence            34556788887777788888445666889999998643334343333   334445555433  34333344444433

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00909 2A0306 amino acid transporter

Probab=88.84  E-value=1.7  Score=47.80  Aligned_cols=48  Identities=21%  Similarity=0.140  Sum_probs=32.5

Q ss_pred             CCCChHHHHHHHHHHhHhHhhhHHHHHhH-hcChhHHHHHHHHHHHHHHH
Q psy12819        431 HPVTDGETLTHLLKASLGTGILSMPYAFR-NAGLTGGIFLTVLVAVICTH  479 (675)
Q Consensus       431 ~~~s~~~a~~nl~k~~iG~GiL~LP~af~-~~G~v~g~i~l~~~a~l~~y  479 (675)
                      |+.+.++.++-.+.+.+|+|++.+|.... .+|.. ..+..++.+++...
T Consensus         3 r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~   51 (429)
T TIGR00909         3 RELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALF   51 (429)
T ss_pred             ccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHH
Confidence            55788999999999999999999995544 44542 23444444444433

>TIGR00835 agcS amino acid carrier protein

Probab=87.94  E-value=5.8  Score=43.48  Aligned_cols=53  Identities=23%  Similarity=0.325  Sum_probs=38.9

Q ss_pred             CCChHHHHHHHHHHhHhHh-hhHHHHHhHhcChhHHH----HHHHHHHHHHHHHHHHHhh
Q psy12819        432 PVTDGETLTHLLKASLGTG-ILSMPYAFRNAGLTGGI----FLTVLVAVICTHCSYILGW  486 (675)
Q Consensus       432 ~~s~~~a~~nl~k~~iG~G-iL~LP~af~~~G~v~g~----i~l~~~a~l~~y~~~lL~~  486 (675)
                      +.|.+++++..+.+.+|+| |++.|.|.+.+|  +|-    -...+.+..+.|.-.-|..
T Consensus        46 ~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG--pGAvFWMWI~allGm~~~~~e~~L~~  103 (425)
T TIGR00835        46 GVSSFQALFTSLAARVGIGNIVGVATAIAIGG--PGAVFWMWVTAFIGMATKFVESTLAQ  103 (425)
T ss_pred             CccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999999999998 999999999888  333    3334444455555544443

Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=86.65  E-value=4.2  Score=45.44  Aligned_cols=31  Identities=23%  Similarity=0.423  Sum_probs=25.9

Q ss_pred             CCChHHHHHHHHHHhHhHhhhHHHHHhH-hcC
Q psy12819        432 PVTDGETLTHLLKASLGTGILSMPYAFR-NAG  462 (675)
Q Consensus       432 ~~s~~~a~~nl~k~~iG~GiL~LP~af~-~~G  462 (675)
                      +-+.++.....+.+++|+|++.+|.... ..|
T Consensus         2 ~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag   33 (468)
T TIGR03810         2 KLGLGALTALVVGSMIGSGIFSLPSDMAAGAA   33 (468)
T ss_pred             CCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhc
Confidence            4678899999999999999999988754 444

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=85.28  E-value=1.9  Score=47.95  Aligned_cols=72  Identities=11%  Similarity=0.074  Sum_probs=41.1

Q ss_pred             CCCCChHH-HHHHHHHHhHhHhhhHHHHHhHhcC--hhHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHhhHHHHH
Q psy12819        430 AHPVTDGE-TLTHLLKASLGTGILSMPYAFRNAG--LTGGIFLTVLVAVICTHCSYILGWRNTDPLAESFTRYRNSI  503 (675)
Q Consensus       430 ~~~~s~~~-a~~nl~k~~iG~GiL~LP~af~~~G--~v~g~i~l~~~a~l~~y~~~lL~~~~~~~~~~~~~~~~~~~  503 (675)
                      +++.+.++ ...-.....+|.|++.+|......+  ...+.+...++..+..++...+.+  +.|...+..+|.+..
T Consensus        11 ~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~--~~p~~GG~y~~~~~~   85 (466)
T COG0531          11 KKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSS--AIPSAGGAYAYAKRA   85 (466)
T ss_pred             CCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCCCCeeeehhhh
Confidence            34456666 6667788899999999999988775  222212222222233455555544  344444444555544

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=84.98  E-value=3.8  Score=45.94  Aligned_cols=71  Identities=17%  Similarity=0.229  Sum_probs=41.2

Q ss_pred             CCCChHHHHHHHHHHhHhHhhhHHH-HHhHhcChhHHHHHHHHHHH---HHHHHHHHHhhccCCC-CchhHhhHHHHH
Q psy12819        431 HPVTDGETLTHLLKASLGTGILSMP-YAFRNAGLTGGIFLTVLVAV---ICTHCSYILGWRNTDP-LAESFTRYRNSI  503 (675)
Q Consensus       431 ~~~s~~~a~~nl~k~~iG~GiL~LP-~af~~~G~v~g~i~l~~~a~---l~~y~~~lL~~~~~~~-~~~~~~~~~~~~  503 (675)
                      |+.+.++.....+.+.+|+|++..| .+.+++|-..-++..++.++   ...+|.-.|..  ..| ...++..|.+..
T Consensus         2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s--~~P~~gG~~~~~~~~~   77 (478)
T TIGR00913         2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMAT--FYPVVSGSFATYASRF   77 (478)
T ss_pred             CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCCHHHHHHHH
Confidence            3467788888899999999998765 67778874322333444443   33344444433  333 233454454443

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=84.18  E-value=8.9  Score=42.54  Aligned_cols=115  Identities=7%  Similarity=-0.011  Sum_probs=66.1

Q ss_pred             cCCCCChHHHHHHHHHhhhccccchHHHHHHh--cChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHH
Q psy12819         14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRN--AGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIG   91 (675)
Q Consensus        14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~--~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~   91 (675)
                      ++|+.+.++-+..-....+....+.+-...-.  .++..+++..++..++...-+-+....    ..|.   ..++.-+.
T Consensus        10 ~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~----G~r~---Gl~~~v~s   82 (442)
T TIGR00800        10 EERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRA----GAKY---GLPFPVLS   82 (442)
T ss_pred             ccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhh----HHHh---CCCcchhh
Confidence            44444554444444444444333333333222  344444444444433333333333222    2222   36888889


Q ss_pred             HHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcC
Q psy12819         92 EVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTG  145 (675)
Q Consensus        92 ~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~  145 (675)
                      |..|          |++|..+..++..+...|=...-....++.+..+++...+
T Consensus        83 R~~F----------G~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~  126 (442)
T TIGR00800        83 RASF----------GIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFP  126 (442)
T ss_pred             hhhh----------hhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcc
Confidence            9988          6778888888888888888888888888888888876543

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=83.90  E-value=6.2  Score=43.74  Aligned_cols=60  Identities=15%  Similarity=0.089  Sum_probs=37.6

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHHHHh-HhcC----hhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMPYAF-RNAG----LTGGIFLTVLVAVICTHCSYILGWRN  488 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af-~~~G----~v~g~i~l~~~a~l~~y~~~lL~~~~  488 (675)
                      .+|+-+.++.+.-.+.+.+|+|++..|... +..|    .+.+.++-.+......+|.-.|..+.
T Consensus         6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~   70 (445)
T PRK11357          6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAY   70 (445)
T ss_pred             ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            345678999999888999999999999763 4444    22223333333444455555554433

>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]

Probab=82.42  E-value=9.6  Score=42.49  Aligned_cols=187  Identities=16%  Similarity=0.175  Sum_probs=103.6

Q ss_pred             CCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHHHHHh
Q psy12819         17 IGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGEVAFA   96 (675)
Q Consensus        17 ~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~~~~~   96 (675)
                      +++.+..+-+=..++-|+|-+-=|.--+|-||.+|.+-+++-..+.----..++- .  .+  .|++..|-+|++++-+ 
T Consensus        51 Ptnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L-~--~S--vR~~G~Si~~ia~~~l-  124 (575)
T COG1966          51 PTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSL-M--LS--VRHGGKSIGEIAGKYL-  124 (575)
T ss_pred             cCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhhe-e--ee--eccCCccHHHHHHHHh-
Confidence            4677788888899999999999999999999999998876655443211111111 0  11  2334589999999988 


Q ss_pred             cCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCcc-HHHHHHH--HHHHHHHhhcccCc-cc
Q psy12819         97 KGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELD-IRVYISA--FLIPLILLSWVPNL-KS  172 (675)
Q Consensus        97 ~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~-~~~~~~i--~~~~~~pl~~~~~l-~~  172 (675)
                               |+..+.+..+...+...-...++...+.+.    +.+   .++. ....+.+  ....-+   ..|.+ .+
T Consensus       125 ---------G~~a~~~~~~~~l~iliiv~Avfa~vv~~~----l~~---~p~~~f~v~~tipiA~~~G~---~~~~~rg~  185 (575)
T COG1966         125 ---------GRTAKVFFLLLALILLILVGAVFAAVIAKL----LAN---SPWGVFTVFLTIPLAVLMGI---YLYRLRGN  185 (575)
T ss_pred             ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhh---CChhHHHHHHHHHHHHHHHH---HHHHhccc
Confidence                     677888777776666554433333222222    111   1111 1111111  111112   23333 56


Q ss_pred             cchhhhHHHHHHHHHhheeEEEEcccCCCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeecc
Q psy12819        173 LAPVSMVANLLMGTGLGITFYYIVWDLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRT  236 (675)
Q Consensus       173 L~~~S~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~  236 (675)
                      ..-.|.++...++.++..--+..       -..+.+ +.+.-....-++.+.|.....+.|+-.
T Consensus       186 ~~~~siig~~ll~~ai~~g~~v~-------~~~~~~-~~~~~~~~w~ii~~~Y~fiAsvLPVW~  241 (575)
T COG1966         186 MGISSVIGLALLILAIYLGSVVP-------IDAPIF-TGSLVILVWIIILFIYAFIASVLPVWL  241 (575)
T ss_pred             ccccchHHHHHHHHHHHhccccc-------cccccc-cccchhHHHHHHHHHHHHHHHHhHHHH
Confidence            77788888776655544332211       011111 233334445556655655666666655

>KOG1287|consensus

Probab=81.17  E-value=1.4  Score=48.47  Aligned_cols=64  Identities=16%  Similarity=0.185  Sum_probs=42.3

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcC-hh-HHHHHHHHHHHHHHH---HHHHHhhccCCCC
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAG-LT-GGIFLTVLVAVICTH---CSYILGWRNTDPL  492 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G-~v-~g~i~l~~~a~l~~y---~~~lL~~~~~~~~  492 (675)
                      .+|+.+.+..+..++..++|+||...|.....-+ =+ .+.+.-+++|+++.-   |.--|...-.+++
T Consensus        10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksG   78 (479)
T KOG1287|consen   10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSG   78 (479)
T ss_pred             ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCC
Confidence            4566788899999999999999999999876554 33 233334455555544   4444544444554

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=80.24  E-value=6.4  Score=43.18  Aligned_cols=66  Identities=18%  Similarity=0.178  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHH----HHHHHHHHHHhhccCCCCchhHhhHHHHH
Q psy12819        434 TDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVA----VICTHCSYILGWRNTDPLAESFTRYRNSI  503 (675)
Q Consensus       434 s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a----~l~~y~~~lL~~~~~~~~~~~~~~~~~~~  503 (675)
                      |+++++...+.+.+|+|+...| +..+.|... .+..++.+    +...++...+.++  .|...+...|.+..
T Consensus         2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~-~~~~~i~~~~~~l~~a~~~~el~~~--~p~~GG~y~~~~~~   71 (426)
T PF13520_consen    2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPSA-ILAWIIAALLFFLPIALSYAELSSA--YPSAGGIYVWVSRA   71 (426)
T ss_dssp             -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHH-HHHHHHHHHHHHHHHHHHHHHHHTT--TTSSTTHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHhcc--CCCcCeeeehhhhc
Confidence            5788889999999999999999 777777652 33222222    3444555455332  45444444555544

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	675
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.47
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.93
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.17
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	96.08
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	91.92
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	90.27

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.47  E-value=8.6e-08  Score=104.70  Aligned_cols=216  Identities=10%  Similarity=0.050  Sum_probs=122.5

Q ss_pred             ccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819         13 ESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE   92 (675)
Q Consensus        13 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~   92 (675)
                      +++++.+.++.+...+.+++|+|++.+|...++.|.. +++..++.++.+......+.|...+.+     +..++-+..+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p-----~~Gg~y~~~~   78 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDP-----SPGGSYAYAR   78 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCC-----CTTTHHHHHH
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCC-----CCCCchhhHH
Confidence            4567889999999999999999999999998888864 677777777777777776766554432     2345666667


Q ss_pred             HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccc
Q psy12819         93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKS  172 (675)
Q Consensus        93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~  172 (675)
                      +.+          ||....++.....+.......++....++.+...++.. +.++.... ..+....+.-....+..|.
T Consensus        79 ~~~----------G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~in~~g~~~  146 (445)
T 3l1l_A           79 RCF----------GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-KDPWVLTI-TCVVVLWIFVLLNIVGPKM  146 (445)
T ss_dssp             HHS----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-GSHHHHHH-HHHHHHHHHHHHHHHCHHH
T ss_pred             hHc----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-cccHHHHH-HHHHHHHHHHHHHHhchHH
Confidence            776          66677777777666555444445444444443332221 00111111 1122222222333445555


Q ss_pred             cchhhhHHHHHHHHHhheeEEEEccc-CCC-CCC-CC--CCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhh
Q psy12819        173 LAPVSMVANLLMGTGLGITFYYIVWD-LHK-PME-MP--QIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISR  247 (675)
Q Consensus       173 L~~~S~~~~~~~~~~~~ii~~~~~~~-~~~-~~~-~~--~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~  247 (675)
                      ...+..+.....+..++.++...... .++ ..+ ..  ...++.++..++....|+|.+...+...-.|          
T Consensus       147 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e----------  216 (445)
T 3l1l_A          147 ITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGV----------  216 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGG----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHH----------
Confidence            55555444433322222111111111 111 100 00  0113456788889999999999999999898          


Q ss_pred             hhhhcCCCC-ccc
Q psy12819        248 ELMIGNGRD-HNV  259 (675)
Q Consensus       248 ~~M~~~p~~-~~~  259 (675)
                        + |||+| .+|
T Consensus       217 --~-k~p~r~ip~  226 (445)
T 3l1l_A          217 --V-KNPKRNVPI  226 (445)
T ss_dssp             --B-SSHHHHHHH
T ss_pred             --h-cCccccccH
Confidence              8 89865 454

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.93  E-value=9.5e-06  Score=88.35  Aligned_cols=214  Identities=13%  Similarity=0.071  Sum_probs=116.1

Q ss_pred             cCCCCChHHHHHHHHHhhhccccchHHHH-HHhcChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819         14 SNNIGKDGETLTHLLKASLGTGILSMPYA-FRNAGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE   92 (675)
Q Consensus        14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~a-f~~~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~   92 (675)
                      ++++.+.++.+...+.+++|+|++.+|.. .+.+|- .+.+..++.++++......+.|...+.+     +....-+.++
T Consensus         4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P-----~~Gg~y~~~~   77 (444)
T 3gia_A            4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIV-----SNAGPIAFIH   77 (444)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCC-----CTTTHHHHHH
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCC-----CCCcHHHhHH
Confidence            45778999999999999999999998754 556676 5667777777777777777766554332     2345556777


Q ss_pred             HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHH--HHHHHHHHHHHhhcccCc
Q psy12819         93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRV--YISAFLIPLILLSWVPNL  170 (675)
Q Consensus        93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~--~~~i~~~~~~pl~~~~~l  170 (675)
                      +.+|  +++      .+.. +.....+.....+..+....++.+...++.    ..+...  .+.+....++-....+..
T Consensus        78 ~~~G--~~~------~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~in~~g~  144 (444)
T 3gia_A           78 KAIG--DNI------ITGA-LSILLWMSYVISIALFAKGFAGYFLPLINA----PINTFNIAITEIGIVAFFTALNFFGS  144 (444)
T ss_dssp             HHHC--SSH------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHhC--cch------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCchHHHHHHHHHHHHHHHHHHHHhH
Confidence            7772  211      0222 223333333333444455555555554432    111111  111222222223334455


Q ss_pred             cccchhhhHHHHHHHHHhheeEEEEc-c-cCCCCCCCCCCCCCCchhhHhHHHHhhhccceEeeeeccccccCCCchhhh
Q psy12819        171 KSLAPVSMVANLLMGTGLGITFYYIV-W-DLHKPMEMPQIADISTMPTFFSIVIFAIEAIGVVISFRTATLLSRPVISRE  248 (675)
Q Consensus       171 ~~L~~~S~~~~~~~~~~~~ii~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~i~~faf~~h~~i~~i~~~~~~~~~~~~~~  248 (675)
                      |....+..+.....+..++..+.... . +..+..+.....++.++...+....|+|.|.-.+...-.|           
T Consensus       145 ~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e-----------  213 (444)
T 3gia_A          145 KAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEH-----------  213 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGG-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHH-----------
Confidence            55555554443332222221111011 1 1111111111112345677788889999999999888888           


Q ss_pred             hhhcCCCC-ccc
Q psy12819        249 LMIGNGRD-HNV  259 (675)
Q Consensus       249 ~M~~~p~~-~~~  259 (675)
                       + |||+| .+|
T Consensus       214 -~-k~P~r~ip~  223 (444)
T 3gia_A          214 -I-ENPKKNVPR  223 (444)
T ss_dssp             -B-SSHHHHHHH
T ss_pred             -c-cCcccchhH
Confidence             8 99976 455

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.17  E-value=0.00062  Score=75.27  Aligned_cols=214  Identities=9%  Similarity=-0.003  Sum_probs=99.7

Q ss_pred             CccCCCCChHHHHHHHHHhhhccccchHHHHHHhcChhhHHHHHHHHHHHHH-HHHHHHHHhhHHHhh--hcCCCCCCHH
Q psy12819         12 TESNNIGKDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICT-HCSYILVQCGHVLYR--RTKVTSMSFA   88 (675)
Q Consensus        12 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~~G~~~g~illi~~~~~~~-~t~~lL~~~~~~~~~--~~~~~~~sy~   88 (675)
                      .+.+++.+.++.+...+++++|  +.++|. .+..|.. +++..++.+.+.. .....+.|.    +.  +. + ....-
T Consensus         7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael----~s~~~~-P-~GG~y   76 (511)
T 4djk_A            7 TGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEM----ATVDGW-E-EGGVF   76 (511)
T ss_dssp             -----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHH----HTTSCC-----CHH
T ss_pred             CccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHH----cccccC-C-CCChh
Confidence            4456788999999998988886  677775 5677753 3333333332222 234444443    32  21 1 34555


Q ss_pred             HHHHHHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHH--HhhcCCCccHHHHHHHHHHHHHHhhc
Q psy12819         89 DIGEVAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVI--NHYTGTELDIRVYISAFLIPLILLSW  166 (675)
Q Consensus        89 ~l~~~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~--~~~~~~~~~~~~~~~i~~~~~~pl~~  166 (675)
                      +-+++.+          |+....++.....+.......++....++.+...+  +......+....+. +....++-...
T Consensus        77 ~~~~~~~----------g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~in  145 (511)
T 4djk_A           77 AWVSNTL----------GPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAA-LIILWALALTQ  145 (511)
T ss_dssp             HHHHHHH----------CHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHH-HHHHHHHHHHH
T ss_pred             hhHHhhc----------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHH-HHHHHHHHHHH
Confidence            5666666          55556666666666555544555444444443331  11111111122222 22222222333


Q ss_pred             ccCccccchhhhHHHHH-H---HHHhhee-EEEEcccCCC---CCCCCCCCCC--CchhhHhHHHHhhhccceEeeeecc
Q psy12819        167 VPNLKSLAPVSMVANLL-M---GTGLGIT-FYYIVWDLHK---PMEMPQIADI--STMPTFFSIVIFAIEAIGVVISFRT  236 (675)
Q Consensus       167 ~~~l~~L~~~S~~~~~~-~---~~~~~ii-~~~~~~~~~~---~~~~~~~~~~--~~~~~~~~i~~faf~~h~~i~~i~~  236 (675)
                      .+..|....+..+.... .   +..+++. +.....+.+.   .+....+.+.  .+....+....|+|.|.-.....-.
T Consensus       146 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~  225 (511)
T 4djk_A          146 FGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVN  225 (511)
T ss_dssp             HTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGS
T ss_pred             HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHH
Confidence            44455555544443221 1   1111111 1000011110   0111111111  2344567788999999999999999


Q ss_pred             ccccCCCchhhhhhhcCCCCc-cc
Q psy12819        237 ATLLSRPVISRELMIGNGRDH-NV  259 (675)
Q Consensus       237 ~~~~~~~~~~~~~M~~~p~~~-~~  259 (675)
                      |            + |||+|- +|
T Consensus       226 E------------~-k~P~k~ip~  236 (511)
T 4djk_A          226 E------------M-SNPGRDYPL  236 (511)
T ss_dssp             S------------S-SCCTTTHHH
T ss_pred             h------------c-cCcccchhH
Confidence            9            9 999764 44

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=96.08  E-value=0.021  Score=61.65  Aligned_cols=74  Identities=18%  Similarity=0.152  Sum_probs=48.1

Q ss_pred             CCCCCChHHHHHHHHHHhHhHhhhHHHHHhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHHH
Q psy12819        429 LAHPVTDGETLTHLLKASLGTGILSMPYAFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNSI  503 (675)
Q Consensus       429 ~~~~~s~~~a~~nl~k~~iG~GiL~LP~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~~  503 (675)
                      .+|+-+.++..+..+.+.+|+|++.+|....+.|-. +.+..++.++++........+ ..+.|...+..+|.+..
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~   80 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRC   80 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhH
Confidence            345678999999999999999999999998888864 566666655555544443332 12233333444454443

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=91.92  E-value=0.23  Score=53.27  Aligned_cols=72  Identities=11%  Similarity=0.028  Sum_probs=44.4

Q ss_pred             CCCCChHHHHHHHHHHhHhHhhhHHH-HHhHhcChhHHHHHHHHHHHHHHHHHHHHhh-ccCCCCchhHhhHHHH
Q psy12819        430 AHPVTDGETLTHLLKASLGTGILSMP-YAFRNAGLTGGIFLTVLVAVICTHCSYILGW-RNTDPLAESFTRYRNS  502 (675)
Q Consensus       430 ~~~~s~~~a~~nl~k~~iG~GiL~LP-~af~~~G~v~g~i~l~~~a~l~~y~~~lL~~-~~~~~~~~~~~~~~~~  502 (675)
                      +|+-+.++..+-.+.+.+|+|++.+| .+.+++|- ...+..++.++++......+.+ ..+.|...+..+|.+.
T Consensus         5 ~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~   78 (444)
T 3gia_A            5 NKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHK   78 (444)
T ss_dssp             CCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHH
Confidence            45678999999999999999999876 45566665 4455555555555544444433 2233443334444444

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=90.27  E-value=1.1  Score=49.12  Aligned_cols=152  Identities=9%  Similarity=0.031  Sum_probs=93.5

Q ss_pred             cCCCCChHHHHHHHHHhhhccccchHHHHHHh-cChhhHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCCCCHHHHHH
Q psy12819         14 SNNIGKDGETLTHLLKASLGTGILSMPYAFRN-AGLTGGIFLTVLVAVICTHCSYILVQCGHVLYRRTKVTSMSFADIGE   92 (675)
Q Consensus        14 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~af~~-~G~~~g~illi~~~~~~~~t~~lL~~~~~~~~~~~~~~~~sy~~l~~   92 (675)
                      ++++.+.++-+..-+...++.+.+.+...+.. .++..+++.+++..++...-+-+......    |.   ..+|.++.|
T Consensus        23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~----~~---Gl~~~v~~R   95 (501)
T 2jln_A           23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAI----RW---GINFTVAAR   95 (501)
T ss_dssp             GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHH----HH---CCCHHHHTT
T ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHh----hc---CCChhhhhH
Confidence            45556777777777777777777777665554 23455555555544444433333333222    22   257999999


Q ss_pred             HHHhcCCcccccchhhhHHHHHHHHHHHHhccceeeeeeehhhHHHHHHhhcCCCccHHHHHHHHHHHHHHhhcccCccc
Q psy12819         93 VAFAKGPAWGRRYARFARICILLGLFLAYFGTCSVYTVIIAKNFSKVINHYTGTELDIRVYISAFLIPLILLSWVPNLKS  172 (675)
Q Consensus        93 ~~~~~g~~~~~~~g~~~~~~v~i~i~~~~~g~~v~Y~i~i~~~l~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~  172 (675)
                      ..|          |++|..+..+...+.++|-...-....++.+..+++...+. .+.....+++.++.++..+. ..+.
T Consensus        96 ~~F----------G~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~-~~~~v~~~i~~~l~~~~~~~-G~~~  163 (501)
T 2jln_A           96 MPF----------GIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGF-TNLPLWIVIFGAIQVVTTFY-GITF  163 (501)
T ss_dssp             TTS----------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             hhc----------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHh-CHHH
Confidence            887          67788888888888888877777777788888877644321 12344455555666666643 3566


Q ss_pred             cchhhhHHHHHH
Q psy12819        173 LAPVSMVANLLM  184 (675)
Q Consensus       173 L~~~S~~~~~~~  184 (675)
                      ++++..+....+
T Consensus       164 i~~~~~~~~p~~  175 (501)
T 2jln_A          164 IRWMNVFASPVL  175 (501)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666655554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00